Hirohisa Kishino
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Computer Science
Hirohisa Kishino's Degrees
- PhD Computer Science University of Tokyo
- Masters Computer Science University of Tokyo
- Bachelors Computer Science University of Tokyo
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(Suggest an Edit or Addition)Hirohisa Kishino's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Dating of the human-ape splitting by a molecular clock of mitochondrial DNA (2005) (6891)
- Evaluation of the maximum likelihood estimate of the evolutionary tree topologies from DNA sequence data, and the branching order in hominoidea (1989) (2061)
- Estimating the rate of evolution of the rate of molecular evolution. (1998) (1230)
- Performance of a divergence time estimation method under a probabilistic model of rate evolution. (2001) (611)
- Divergence time and evolutionary rate estimation with multilocus data. (2002) (495)
- Maximum likelihood inference of protein phylogeny and the origin of chloroplasts (1990) (488)
- An evolutionary model for maximum likelihood alignment of DNA sequences (1991) (378)
- Is there something wrong with the bootstrap on phylogenies? A reply to Hillis and Bull (1993) (352)
- A phylogenetic foundation for comparative mammalian genomics. (2001) (271)
- Inching toward reality: An improved likelihood model of sequence evolution (2004) (266)
- Genomic adaptation to polyphagy and insecticides in a major East Asian noctuid pest (2017) (219)
- Protein evolution with dependence among codons due to tertiary structure. (2003) (205)
- Accuracies of the simple methods for estimating the bootstrap probability of a maximum-likelihood tree (1994) (187)
- Time flies, a new molecular time-scale for brachyceran fly evolution without a clock. (2003) (176)
- Correspondence analysis of genes and tissue types and finding genetic links from microarray data. (2000) (129)
- Plasmodium falciparum Accompanied the Human Expansion out of Africa (2010) (128)
- Phylogenetic relationships between tuna species of the genus Thunnus (Scombridae: Teleostei): Inconsistent implications from morphology, nuclear and mitochondrial genomes (1995) (121)
- CONFIDENCE LIMITS ON THE MAXIMUM‐LIKELIHOOD ESTIMATE OF THE HOMINOID TREE FROM MITOCHONDRIAL‐DNA SEQUENCES (1989) (118)
- Lessons learned from Japanese marine finfish stock enhancement programmes (2006) (116)
- Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution. (2003) (114)
- Phylogenomics and Morphology of Extinct Paleognaths Reveal the Origin and Evolution of the Ratites (2017) (111)
- Converting distance to time: application to human evolution. (1990) (107)
- On the maximum likelihood method in molecular phylogenetics (1991) (104)
- Freeing phylogenies from artifacts of alignment. (1992) (102)
- The small heat shock protein (sHSP) genes in the silkworm, Bombyx mori, and comparative analysis with other insect sHSP genes (2009) (102)
- Appropriate likelihood ratio tests and marginal distributions for evolutionary tree models with constraints on parameters. (2000) (98)
- Estimation of the Size of Genetic Bottlenecks in Cell-to-Cell Movement of Soil-Borne Wheat Mosaic Virus and the Possible Role of the Bottlenecks in Speeding Up Selection of Variations in trans-Acting Genes or Elements (2009) (93)
- Estimation of branching dates among primates by molecular clocks of nuclear DNA which slowed down in Hominoidea (1989) (84)
- Bayesian molecular dating using PAML/multidivtime (2005) (81)
- Effectiveness of a Stock Enhancement Program Evaluated by a Two-Stage Sampling Survey of Commercial Landings (1992) (79)
- A New Molecular Clock of Mitochondrial DNA and the Evolution of Hominoids (1984) (76)
- Estimation of effective population size of HIV-1 within a host: a pseudomaximum-likelihood approach. (2002) (75)
- Robust Time Estimation Reconciles Views of the Antiquity of Placental Mammals (2007) (75)
- Genetic effects of long-term stock enhancement programs. (2009) (74)
- Comprehensive Comparison of Self-administered Questionnaires for Measuring Quantitative Autistic Traits in Adults (2014) (71)
- Heterogeneity of tempo and mode of mitochondrial DNA evolution among mammalian orders. (1989) (71)
- Domestic wastewater reuse using a submerged membrane bioreactor (1996) (71)
- Positive Selection Acting on a Surface Membrane Protein of the Plant-Pathogenic Phytoplasmas (2006) (70)
- Man's place in Hominoidea as inferred from molecular clocks of DNA (2005) (66)
- Cluster inference methods and graphical models evaluated on NCI60 microarray gene expression data. (2000) (65)
- Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences. (2004) (65)
- Quantifying the impact of protein tertiary structure on molecular evolution. (2007) (60)
- Estimation of Divergence Times from Molecular Sequence Data (2005) (57)
- Complex population history of two Anopheles dirus mosquito species in Southeast Asia suggests the influence of Pleistocene climate change rather than human‐mediated effects (2008) (54)
- Synonymous substitutions substantially improve evolutionary inference from highly diverged proteins. (2008) (51)
- Viruses Roll the Dice: The Stochastic Behavior of Viral Genome Molecules Accelerates Viral Adaptation at the Cell and Tissue Levels (2015) (51)
- Genomic background predicts the fate of duplicated genes: evidence from the yeast genome. (2004) (49)
- Detection of closely linked multiple quantitative trait loci using a genetic algorithm. (2001) (48)
- Rates of Molecular Evolution Suggest Natural History of Life History Traits and a Post-K-Pg Nocturnal Bottleneck of Placentals (2017) (48)
- Very fast algorithms for evaluating the stability of ML and Bayesian phylogenetic trees from sequence data. (2002) (47)
- Bombyx small RNAs: genomic defense system against transposons in the silkworm, Bombyx mori. (2008) (47)
- Mitochondrial DNA evolution in primates: Transition rate has been extremely low in the lemur (1990) (46)
- A viral sampling design for testing the molecular clock and for estimating evolutionary rates and divergence times (2002) (46)
- Population genetics without intraspecific data. (2007) (44)
- Incorporating gene-specific variation when inferring and evaluating optimal evolutionary tree topologies from multilocus sequence data. (2005) (44)
- Recent independent evolution of msp1 polymorphism in Plasmodium vivax and related simian malaria parasites. (2007) (44)
- Statistical comparison of nucleotide, amino acid, and codon substitution models for evolutionary analysis of protein-coding sequences. (2009) (41)
- Coevolution and Hierarchical Interactions of Tomato mosaic virus and the Resistance Gene Tm-1 (2012) (40)
- Inheritance of song and stridulatory peg number divergence between Chorthippus brunneus and C. jacobsi, two naturally hybridizing grasshopper species (Orthoptera: Acrididae) (2005) (38)
- Phylogenetic Detection of Recombination with a Bayesian Prior on the Distance between Trees (2008) (37)
- Expression map of a complete set of gustatory receptor genes in chemosensory organs of Bombyx mori. (2017) (36)
- The empirical Bayes estimators of fine‐scale population structure in high gene flow species (2017) (33)
- Empirical Bayes Inference of Pairwise FST and Its Distribution in the Genome (2007) (33)
- Estimating mortality rates from tag recoveries: incorporating over-dispersion, correlation, and change points (1994) (32)
- Lineage-specific positive selection at the merozoite surface protein 1 (msp1) locus of Plasmodium vivax and related simian malaria parasites (2010) (30)
- Linkage between recycling and consumption: a case of toilet paper in Japan (2000) (28)
- Rigorous monitoring of a large-scale marine stock enhancement program demonstrates the need for comprehensive management of fisheries and nursery habitat (2019) (28)
- Multidimensional vector space representation for convergent evolution and molecular phylogeny. (2005) (27)
- Nucleotide Diversity and Selection Signature in the Domesticated Silkworm, Bombyx mori, and Wild Silkworm, Bombyx mandarina (2011) (26)
- Empirical Bayes procedure for estimating genetic distance between populations and effective population size. (2000) (25)
- Phylogenetic methodology for detecting protein interactions. (2006) (25)
- Finless porpoise abundance in Omura Bay, japan : Estimation from aerial sighting surveys (1998) (25)
- Partial conservation of LFY function between rice and Arabidopsis. (2003) (24)
- Molecular and morphological evidence of hybridization between native Ruditapes philippinarum and the introduced Ruditapes form in Japan (2013) (23)
- Evolutionary History and Mode of the amylase Multigene Family in Drosophila (2003) (23)
- Stochastic Variational Inference for Bayesian Phylogenetics: A Case of CAT Model (2018) (23)
- Rapid evaluation of the phylogenetic congruence of sequence data using likelihood ratio tests. (2000) (23)
- Recycling and consumption in Germany and Japan: a case of toilet paper (1999) (22)
- An Integrated-Likelihood Method for Estimating Genetic Differentiation Between Populations (2006) (21)
- Model-based tolerance intervals derived from cumulative historical composition data: application for substantial equivalence assessment of a genetically modified crop. (2014) (20)
- Evolution of RNA polymerases and branching patterns of the three major groups of archaebacteria (2005) (19)
- A population size estimate of the finless porpoise,Neophocaena phocaenoides, from aerial sighting surveys in Ariake Sound and Tachibana Bay, Japan (1997) (19)
- Genetic effects of marine stock enhancement: a case study based on the highly piscivorous Japanese Spanish mackerel (2014) (18)
- Stability of Mitochondrial Membrane Proteins in Terrestrial Vertebrates Predicts Aerobic Capacity and Longevity (2011) (18)
- Divergence pattern of duplicate genes in protein-protein interactions follows the power law. (2005) (18)
- Adaptive Threonine Increase in Transmembrane Regions of Mitochondrial Proteins in Higher Primates (2008) (18)
- Core set approach to reduce uncertainty of gene trees (2006) (17)
- Plasmodium falciparum mitochondrial genetic diversity exhibits isolation-by-distance patterns supporting a sub-Saharan African origin. (2013) (16)
- Detailed Analysis of Japanese Population Substructure with a Focus on the Southwest Islands of Japan (2012) (15)
- Detection of heterogeneity and estimation of population characteristics from the field survey data: 1987/88 Japanese feasibility study of the southern hemisphere Minke whales (1991) (14)
- Fold Recognition of the Human Immunodeficiency Virus Type 1 V3 Loop and Flexibility of Its Crown Structure During the Course of Adaptation to a Host (2006) (14)
- Renormalized basal metabolic rate describes the human aging process and longevity (2019) (14)
- A Model of Gene Displacement by Stocking Activities. (1995) (13)
- Evolution of Archaebacteria: Phylogenetic Relationships Among Archaebacteria, Eubacteria, and Eukaryotes (1991) (13)
- Quantifying biodiversity and asymptotics for a sequence of random strings. (2010) (12)
- Understanding population structure in an evolutionary context: population-specific FST and pairwise FST (2020) (12)
- Close Evolutionary Relatedness of Archaebacteria with Eukaryotes (1990) (12)
- Genetic epidemiology of tooth agenesis in Japan: a population‐ and family‐based study (2015) (12)
- A cross-species socio-emotional behaviour development revealed by a multivariate analysis (2013) (12)
- On the separation principle of stochastic control (1983) (12)
- Major contribution of dominant inheritance to autism spectrum disorders (ASDs) in population-based families (2009) (11)
- Codon pairs of the HIV-1 vif gene correlate with CD4+ T cell count (2013) (11)
- Sampling scheme for the estimation of the stock composition in the mixed population based on genetic data (1994) (11)
- Simultaneous Estimation of Mixing Rates and Genetic Drift Under Successive Sampling of Genetic Markers With Application to the Mud Crab (Scylla paramamosain) in Japan (2006) (11)
- Circulation indices: new tools for analyzing the structure of material cascades (2000) (10)
- Global pattern of phylogenetic species composition of shark and its conservation priority (2015) (10)
- Correspondence analysis of paper recycling society : consumers and paper makers in Japan (1998) (10)
- Taxon influence index: assessing taxon-induced incongruities in phylogenetic inference. (2012) (10)
- Susceptibility of forest insect pests to sulfuryl fluoride, 2: Ambrosia beetles (1996) (10)
- Genomic background drives the divergence of duplicated amylase genes at synonymous sites in Drosophila. (2003) (10)
- Phylogenetic skew: an index of community diversity (2015) (10)
- Bayesian Inference of Baseline Fertility and Treatment Effects via a Crop Yield-Fertility Model (2014) (9)
- β-empirical Bayes inference and model diagnosis of microarray data (2012) (9)
- Comparing the Likelihood Functions of Phylogenetic Trees (2000) (8)
- Potential of a smartphone as a stress-free sensor of daily human behaviour (2015) (8)
- Simultaneous Detection of Linkage Disequilibrium and Genetic Differentiation of Subdivided Populations (2004) (7)
- A new approach for comprehensively describing heterogametic sex chromosomes (2018) (7)
- A scan statistic to extract causal gene clusters from case-control genome-wide rare CNV data (2011) (7)
- A Likelihood-based Index of Protein–Protein Binding Affinities with Application to Influenza HA Escape from Antibodies (2007) (7)
- Estimating natural mortality rate in reproductively active female southern right whales, Eubalaena australis (1998) (7)
- Non-biased interval estimation of Leslie's removal method (1992) (6)
- Estimation of Mortality Rates from Tag Recoveries by Survey Sampling. (1992) (6)
- Early-infant diagnostic predictors of the neuro-behavioral development after neonatal care (2015) (6)
- Archaeal β diversity patterns under the seafloor along geochemical gradients (2014) (6)
- Susceptibility of forest insect pests to sulfuryl fluoride, 1: Wood borers and bark beetles (1996) (6)
- Population structure and persistence of Pacific herring following the Great Tohoku earthquake (2017) (5)
- Evolution of Reproductive Life History in Mammals and the Associated Change of Functional Constraints (2021) (5)
- Population-specific FST and Pairwise FST: History and Environmental Pressure (2020) (5)
- Structural Considerations in the Fitness Landscape of a Virus (2010) (5)
- Optimal School Selection and Abundance Index in Purse Seine Fishery. (1993) (5)
- A Reference Population-Based Conformance Proportion (2016) (5)
- Cretaceous origin of giant rhinoceros beetles (Dynastini; Coleoptera) and correlation of their evolution with the Pangean breakup. (2016) (4)
- Distribution of distances between topologies and its effect on detection of phylogenetic recombination (2010) (4)
- BAYESIAN HIERARCHICAL ANOVA MODEL OF STOCHASTIC SEASONALITY FOR Diodon holocanthus IN NORTHERN TAIWAN (2016) (4)
- Estimates of Stocking Effectiveness Evaluated by a Two-stage Sampling Survey of Commercial Landings. (1993) (4)
- Multiple Isolated Transcription Factors Act as Switches and Contribute to Species Uniqueness (2020) (4)
- Comparative analysis of farmers engaged in participatory research to cope with climate change versus non-participants in Northeast Thailand (2018) (4)
- Assessment of the network of protected areas for birds in Taiwan with regard to functional and phylogenetic diversity (2016) (3)
- Compartmentalized isozyme genes and the origin of introns (1990) (3)
- Estimates of natural selection due to protein tertiary structure inform the ancestry of biallelic loci. (2009) (3)
- Waves Out of the Korean Peninsula and Inter- and Intra-Species Replacements in Freshwater Fishes in Japan (2020) (3)
- Examining Genetic Effect Hypotheses of Hatchery Fish on Wild Populations: A Bayesian Approach (2008) (3)
- Hypothesis Testing of Inclusion of the Tolerance Interval for the Assessment of Food Safety (2015) (2)
- Testing the Difference of Quality of Hatchery-reared Fingerlings by Mortality Rates Estimated Simultaneously from Tag Recoveries of Two Groups. (1993) (2)
- Forward Variable Selection Improves the Power of Random Forest for High-Dimensional Micro Biome Data (2022) (2)
- Grouping substitution types into different relaxed molecular clocks (2016) (2)
- Universality and speciality of the viewpoints to private gerdens in Japan - from the comparison between Japanese and British viewpoints by correspondence analysis - (2000) (2)
- Population structure and demographic history of Pacific herring Clupea pallasii around Japan inferred from mitochondrial DNA sequences (2018) (2)
- On the use of allele frequency data to provide estimates of the extent of mixing between the various North Pacific minke whale stocks (1995) (2)
- Fitness decline in hatchery-enhanced salmon populations is manifested by global warming (2019) (2)
- Maximum likelihood procedure adapted to sampling schemes (1998) (1)
- Estimation of Growth Function Parameters from Age-length Data Including Ring-skipping Error. (1996) (1)
- A Novel Method to Identify Key Factors of the Gene Regulatory Network Behind Salmonids Reproductive Behavior Using Directed Graphical Modeling (2013) (1)
- Efficiency of the Method of Four-fold Choice in Incomplete Preference Trials (2000) (1)
- Tree Evaluation and Robustness Testing (2019) (1)
- Population structure of chum salmon and selection on the markers collected for stock identification (2019) (1)
- Spatial distribution of selection pressure on a protein based on the hierarchical Bayesian model. (2013) (1)
- Chemical injuries of satsuma mandarin, Citrus reticulata Blanco fumigated with methyl bromide (1995) (1)
- β-empirical Bayes inference and model diagnosis of microarray data (2012) (1)
- Fold recognition of the HIV-1 V3 loop and flexibility of its crown structure during the course of adaptation to a host (2005) (1)
- Core set approach to reduce uncertainty of gene trees (2006) (1)
- Estimation of Fish Mortality Rates from Tag Recoveries Using Partial Likelihood. (1993) (1)
- Natural and hatchery-derived selection on chum salmon: mechanisms underlying Japanese catch decline in a warming climate (2020) (1)
- Forward variable selection improves the power of random forest for high- dimensional microbiome data (2020) (1)
- Analysis of fishery production systems in coastal ecosystem. Questionaire of Fishermen, Their Households, and Cooperatives. (1997) (0)
- 1SA1-01 Co-evolution of proteins and covariation of evolutionary rate(1SA1 Co-evolutionary analyses as the methods to investigate protein-protein interaction,The 47th Annual Meeting of the Biophysical Society of Japan) (2009) (0)
- Durability of plant resistance to diploid pathogen (2021) (0)
- Analysis of Multiple Quantitative Trait Locus Using Genetic Algorithms and AIC. (1999) (0)
- Rates of molecular evolution predict intraspecies genetic diversity (2019) (0)
- Diversified Preference and a Bayesian Hierarchical Model (2000) (0)
- Title Archaeal β diversity patterns under the seafloor alonggeochemical gradients (2018) (0)
- Massive loss of transcription factors and the initial diversification of placental mammals (2021) (0)
- Detecting significant components of microbiomes by random forest with forward variable selection and phylogenetics (2020) (0)
- Massive Loss of Transcription Factors Promotes the Initial Diversification of Placental Mammals (2022) (0)
- DOUBLE LINE TRANSECT ESTIMATION OF THE ABUNDANCE OF THE SOUTHERN HEMISPHERE MINKE WHALES (1987) (0)
- OBSERVATION SUBAREA DECISION AND POPULATION DENSITY ESTIMATION BY SPACE SCALE-INVARIANCE (2009) (0)
- Exploratory analysis of multiple traits co-adaptations in the population history (2018) (0)
- Testing identical expression of QTL for the grain shape of Barley in two environments. (2000) (0)
- Disinfestation tests for stored grains in commercial silos by carbon dioxide (1996) (0)
- Stochastic Variational Inference of Mixture Models in Phylogenetics (2018) (0)
- Fractional parentage analysis and a scale-free reproductive network of brown trout. (2013) (0)
- Using Linkage Map of Mouse for Prediction of Gene Location in Animals (2000) (0)
- Long-term molecular evolutionary rate determines intraspecific genetic diversity (2019) (0)
- Variance of sightings in the survey of patchily distributed objects (1987) (0)
- Population structure and persistence of Pacific herring following the Great Tohoku earthquake (2016) (0)
- Sampling Survey and Statistical Genetics in Fishery Resource Management and Conservation (2007) (0)
- Modeling Diversified Preference for Flowers (2001) (0)
- Genomic insights into environmental and anthropological selection on the physiology of Pacific salmon (2020) (0)
- The effect of the distribution of distances between trees on detection of phylogenetic recombination (2010) (0)
- Responses of the pupae of Sitophilus granarius L., Sitophilus zeamais Motschulsky and Sitophilus oryzae L. to phosphine and mixtures of phosphine and carbon dioxide. (1996) (0)
- Forward variable selection improves the power of random forest for high-dimensional microbiome data (2021) (0)
- Comprehensive Comparison of Self-administered Questionnaires for Measuring Quantitative Autistic Traits in Adults (2013) (0)
- Fold Recognition and Flexibility of the HIV-1 V 3-Loop Crown Structure during the Course of Adaptation to a Host (2005) (0)
- An R script for unbiased estimation of stocking effectiveness using a two-stage sampling strategy based on fishery landings (2022) (0)
- Dear Recommander, Following your appreciation, we have revised our manuscript, entitled: ‘Impact of ploidy and pathogen life cycle on resistance durability’. Below is a detailed response to your comments (0)
- Exploratory analysis of multi‐trait coadaptations in light of population history (2022) (0)
- Comprehensive understanding of population structure and adaptation through graphical representation of gene–environment–trait associations (2018) (0)
- Responses of stored grain insects to carbon dioxide. 2 Effects of temperature and exposure period on the toxicity of carbon dioxide to Sitophilus granarius, Lasioderma serricorne, Plodia interpunctella, Ephestia cautella and Ephestia kuehniella. (1996) (0)
- Genomic insights into environmental and anthropological selection on the physiology of Pacific salmon Running head: Genomic insights into salmon physiology (2020) (0)
- Mobile Agent System for Animal Genome Database (1998) (0)
- Genomic adaptation to polyphagy and insecticides in a major East Asian noctuid pest (2017) (0)
- Molecular Evolutionary Rate Predicts Intraspecific Genetic Polymorphism and Species-Specific Selection (2022) (0)
- Understanding population history of range expansion and environmental 1 adaptation by visualizing gene – environment – trait associations 2 3 4 Gene – environment – trait associations (2021) (0)
- Rigorous monitoring of a large-scale marine stock enhancement program demonstrates the need for comprehensive management of fisheries and nursery habitat (2019) (0)
- RECOMMENDATION E 5 , the third oncogene of Papillomavirus Hirohisa Kishino (2019) (0)
- Spatiotemporal Modeling to Measure the Effects of Mutations and Selection Pressures (2013) (0)
- Directed graphical modeling of gene expression profile underlying salmonids reproductive behavior (2012) (0)
- Structural diversity as a source of quasispeciation in human immunodeficiency virus type 1 (2004) (0)
- Adaptive Evolution of Viral Genome: Analysis of the Fitness Landscape of a Virus based on the Protein Structure (2012) (0)
- E5, the third oncogene of Papillomavirus (2019) (0)
- Molecular and morphological evidence of hybridization between native Ruditapes philippinarum and the introduced Ruditapes form in Japan (2013) (0)
- Predict Functionally Important Residues Responsible for Estrogen Receptor Subtype Divergence (2003) (0)
- Estimation of Fish Mortality Rates with a Change-point from Tag Recoveries. (1993) (0)
- The least squares estimation of the transition probabilities of binary processes on the basis of sample paths (1983) (0)
- A Reference Population-Based Conformance Proportion (2016) (0)
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