Hongyu Zhao
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American biostatistician
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Hongyu Zhaomathematics Degrees
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Statistics
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Mathematics
Hongyu Zhao's Degrees
- Bachelors Mathematics Fudan University
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(Suggest an Edit or Addition)Hongyu Zhao's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease (2012) (4007)
- Rare independent mutations in renal salt handling genes contribute to blood pressure variation (2008) (811)
- Analysis of Transcription Factor HY5 Genomic Binding Sites Revealed Its Hierarchical Role in Light Regulation of Development[W] (2007) (787)
- De novo mutations in histone modifying genes in congenital heart disease (2013) (740)
- Light Control of Arabidopsis Development Entails Coordinated Regulation of Genome Expression and Cellular Pathways (2001) (544)
- Contribution of rare inherited and de novo variants in 2,871 congenital heart disease probands (2017) (505)
- Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data (2003) (471)
- Control of T helper 2 responses by transcription factor IRF4-dependent dendritic cells. (2013) (392)
- Trans-ancestral GWAS of alcohol dependence reveals common genetic underpinnings with psychiatric disorders (2018) (372)
- Serum protein markers for early detection of ovarian cancer. (2005) (360)
- A Cluster of Metabolic Defects Caused by Mutation in a Mitochondrial tRNA (2004) (350)
- An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge (2014) (306)
- Expression profiling reveals novel pathways in the transformation of melanocytes to melanomas. (2004) (266)
- Expression Profiling Reveals Novel Pathways in the Transformation of Melanocytes to Melanomas (2004) (262)
- Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations (2019) (259)
- International meta-analysis of PTSD genome-wide association studies identifies sex- and ancestry-specific genetic risk loci (2019) (258)
- High density mapping of the MHC identifies a shared role for HLA-DRB1*01:03 in inflammatory bowel diseases and heterozygous advantage in ulcerative colitis (2014) (250)
- Pathway analysis using random forests classification and regression (2006) (247)
- A transcriptome atlas of rice cell types uncovers cellular, functional and developmental hierarchies (2009) (238)
- HUMAN IMPACTS HAVE SHAPED HISTORICAL AND RECENT EVOLUTION IN AEDES AEGYPTI, THE DENGUE AND YELLOW FEVER MOSQUITO (2014) (234)
- Spatiotemporal transcriptomic divergence across human and macaque brain development (2018) (214)
- A Genome-Wide Association Study on Obesity and Obesity-Related Traits (2011) (210)
- Glucocerebrosidase gene-deficient mouse recapitulates Gaucher disease displaying cellular and molecular dysregulation beyond the macrophage (2010) (209)
- Next-generation sequencing in liquid biopsy: cancer screening and early detection (2019) (208)
- A common variant in the patatin‐like phospholipase 3 gene (PNPLA3) is associated with fatty liver disease in obese children and adolescents (2010) (204)
- Elevated serum interleukin-8 is associated with enhanced intratumor neutrophils and reduced clinical benefit of immune-checkpoint inhibitors (2020) (202)
- A global survey of haplotype frequencies and linkage disequilibrium at the DRD2 locus (1998) (201)
- Variant in the glucokinase regulatory protein (GCKR) gene is associated with fatty liver in obese children and adolescents (2012) (198)
- Information assessment on predicting protein-protein interactions (2004) (185)
- Inherited Causes of Clonal Hematopoiesis in 97,691 TOPMed Whole Genomes (2020) (184)
- A statistical framework for cross-tissue transcriptome-wide association analysis (2018) (183)
- Temperature-dependent innate defense against the common cold virus limits viral replication at warm temperature in mouse airway cells (2015) (182)
- GPA: A Statistical Approach to Prioritizing GWAS Results by Integrating Pleiotropy and Annotation (2014) (180)
- Genetic Analysis of Variation in Transcription Factor Binding in Yeast (2010) (171)
- Haplotype analysis in population genetics and association studies. (2003) (169)
- Genomic Evidence for COP1 as a Repressor of Light-Regulated Gene Expression and Development in Arabidopsis Online version contains Web-only data. Article, publication date, and citation information can be found at www.plantcell.org/cgi/doi/10.1105/tpc.004416. (2002) (169)
- A Comparison of Methods for Clustering 16S rRNA Sequences into OTUs (2013) (166)
- Genome-Wide Association Study of Opioid Dependence: Multiple Associations Mapped to Calcium and Potassium Pathways (2014) (165)
- A statistical method for identifying differential gene-gene co-expression patterns (2004) (162)
- Bias detection and correction in RNA-Sequencing data (2011) (158)
- Analyzing cellular biochemistry in terms of molecular networks. (2003) (157)
- Organ-Specific Expression of Arabidopsis Genome during Development1[w] (2005) (157)
- Genomewide association study of cocaine dependence and related traits: FAM53B identified as a risk gene (2013) (157)
- False Discovery Rate Control With Groups (2010) (156)
- Tdrkh is essential for spermatogenesis and participates in primary piRNA biogenesis in the germline (2013) (155)
- Genome-wide Association Study Identifies New Susceptibility Loci for Posttraumatic Stress Disorder (2013) (152)
- Comparison of single-nucleotide polymorphisms and microsatellites in inference of population structure (2005) (152)
- Low-Rank Modeling and Its Applications in Image Analysis (2014) (148)
- Mining the structural genomics pipeline: identification of protein properties that affect high-throughput experimental analysis. (2004) (145)
- Two locus inheritance of non-syndromic midline craniosynostosis via rare SMAD6 and common BMP2 alleles (2016) (145)
- Strong Association of the Alcohol Dehydrogenase 1B Gene (ADH1B) with Alcohol Dependence and Alcohol-Induced Medical Diseases (2011) (144)
- Genome-wide Association Study of Cannabis Dependence Severity, Novel Risk Variants, and Shared Genetic Risks. (2016) (141)
- IBD risk loci are enriched in multigenic regulatory modules encompassing putative causative genes (2018) (139)
- A Statistical Framework to Predict Functional Non-Coding Regions in the Human Genome Through Integrated Analysis of Annotation Data (2015) (136)
- Strong protective effect of the aldehyde dehydrogenase gene (ALDH2) 504lys (*2) allele against alcoholism and alcohol-induced medical diseases in Asians (2012) (134)
- Age-associated changes in expression of small, noncoding RNAs, including microRNAs, in C. elegans. (2011) (131)
- Study of Arabidopsis thalianaresistome in response to cucumber mosaic virus infection using whole genome microarray (2004) (131)
- Association mapping, using a mixture model for complex traits (2002) (130)
- Pumilio 1 Suppresses Multiple Activators of p53 to Safeguard Spermatogenesis (2012) (130)
- Impaired interferon signaling in dendritic cells from older donors infected in vitro with West Nile virus. (2011) (129)
- A microarray analysis of the rice transcriptome and its comparison to Arabidopsis. (2005) (128)
- CCLasso: correlation inference for compositional data through Lasso (2015) (128)
- Genomewide linkage scan for opioid dependence and related traits. (2006) (127)
- Genome-wide association study of post-traumatic stress disorder reexperiencing symptoms in >165,000 US veterans (2019) (126)
- Increased monocyte count as a cellular biomarker for poor outcomes in fibrotic diseases: a retrospective, multicentre cohort study (2019) (126)
- Association of haplotypic variants in DRD2, ANKK1, TTC12 and NCAM1 to alcohol dependence in independent case control and family samples. (2007) (125)
- Androgen Signaling Regulates SARS-CoV-2 Receptor Levels and Is Associated with Severe COVID-19 Symptoms in Men (2020) (125)
- Trans-heterozygous Pkd1 and Pkd2 mutations modify expression of polycystic kidney disease. (2002) (121)
- T cell-intrinsic role of IL-6 signaling in primary and memory responses (2014) (121)
- Practical population group assignment with selected informative markers: Characteristics and properties of Bayesian clustering via STRUCTURE (2005) (118)
- Leveraging functional annotations in genetic risk prediction for human complex diseases (2016) (112)
- Haplotypes at the OPRM1 locus are associated with susceptibility to substance dependence in European‐Americans (2003) (112)
- Haplotype-association analysis. (2008) (109)
- FTO gene SNPs associated with extreme obesity in cases, controls and extremely discordant sister pairs (2008) (109)
- Interacting genetic loci on chromosomes 20 and 10 influence extreme human obesity. (2003) (109)
- Inferring protein-protein interactions through high-throughput interaction data from diverse organisms (2005) (109)
- HAPLORE: a program for haplotype reconstruction in general pedigrees without recombination (2005) (105)
- Modeling Supravalvular Aortic Stenosis Syndrome With Human Induced Pluripotent Stem Cells (2012) (104)
- Macrophage migration inhibitory factor promoter polymorphisms and the clinical expression of scleroderma. (2006) (102)
- Signaling through the adaptor molecule MyD88 in CD4+ T cells is required to overcome suppression by regulatory T cells. (2014) (102)
- COSINE: COndition-SpecIfic sub-NEtwork identification using a global optimization method (2011) (100)
- On a semiparametric test to detect associations between quantitative traits and candidate genes using unrelated individuals (2003) (100)
- Role of TM6SF2 rs58542926 in the pathogenesis of nonalcoholic pediatric fatty liver disease: A multiethnic study (2016) (100)
- Haplotypic variants in DRD2, ANKK1, TTC12, and NCAM1 are associated with comorbid alcohol and drug dependence. (2008) (100)
- Neoantigen-driven B cell and CD4 T follicular helper cell collaboration promotes anti-tumor CD8 T cell responses (2020) (98)
- The Influence of Depression on Quality of Life in Patients with Inflammatory Bowel Disease (2013) (95)
- A Powerful Approach to Estimating Annotation-Stratified Genetic Covariance via GWAS Summary Statistics. (2017) (95)
- PHY906(KD018), an adjuvant based on a 1800-year-old Chinese medicine, enhanced the anti-tumor activity of Sorafenib by changing the tumor microenvironment (2015) (94)
- Inactivating E2f1 reverts apoptosis resistance and cancer sensitivity in Trp53-deficient mice (2003) (90)
- A Branched-Chain Amino Acid-Related Metabolic Signature Characterizes Obese Adolescents with Non-Alcoholic Fatty Liver Disease (2017) (89)
- Analysis of the mutational effects of the COP/DET/FUS loci on genome expression profiles reveals their overlapping yet not identical roles in regulating Arabidopsis seedling development (2003) (87)
- The role of macrophage migration inhibitory factor in autoimmune liver disease (2014) (87)
- Array-based profiling of DNA methylation changes associated with alcohol dependence. (2013) (85)
- Analysis of far-red light-regulated genome expression profiles of phytochrome A pathway mutants in Arabidopsis. (2002) (85)
- Protein–DNA interaction mapping using genomic tiling path microarrays in Drosophila (2003) (84)
- Rapid generation of maturationally synchronized human dendritic cells: contribution to the clinical efficacy of extracorporeal photochemotherapy. (2010) (83)
- Integrative Tissue-Specific Functional Annotations in the Human Genome Provide Novel Insights on Many Complex Traits and Improve Signal Prioritization in Genome Wide Association Studies (2015) (82)
- A review of post-GWAS prioritization approaches (2013) (82)
- Finding genetic contributions to sporadic disease: A recessive locus at 12q24 commonly contributes to patent ductus arteriosus (2002) (81)
- Detection of DNA copy number alterations using penalized least squares regression (2005) (80)
- Association of Gamma-Aminobutyric Acid A Receptor α2 Gene (GABRA2) with Alcohol Use Disorder (2014) (79)
- Systematic tissue-specific functional annotation of the human genome highlights immune-related DNA elements for late-onset Alzheimer’s disease (2016) (78)
- Transcriptomic organization of the human brain in post-traumatic stress disorder (2020) (77)
- Comparisons of multi‐marker association methods to detect association between a candidate region and disease (2010) (77)
- Integrating Clinical and Multiple Omics Data for Prognostic Assessment across Human Cancers (2017) (76)
- Susceptibility loci for murine HIV-associated nephropathy encode trans-regulators of podocyte gene expression. (2009) (74)
- Improving genetic risk prediction by leveraging pleiotropy (2013) (74)
- A Genome-Wide Analysis of Blue-Light Regulation of Arabidopsis Transcription Factor Gene Expression during Seedling Development (2003) (73)
- Spectral clustering based on learning similarity matrix (2018) (72)
- Genotyping Array Design and Data Quality Control in the Million Veteran Program. (2020) (72)
- Analytical and clinical validity of whole‐genome oligonucleotide array comparative genomic hybridization for pediatric patients with mental retardation and developmental delay (2008) (69)
- Regulatory variation within and between species. (2011) (68)
- Author Correction: Inherited causes of clonal haematopoiesis in 97,691 whole genomes (2021) (68)
- Estimating dynamic models for gene regulation networks (2008) (67)
- A computational approach for ordering signal transduction pathway components from genomics and proteomics Data (2004) (66)
- Incorporating Biological Pathways via a Markov Random Field Model in Genome-Wide Association Studies (2011) (66)
- Genome-Wide Association Study of Alcohol Dependence Implicates KIAA0040 on Chromosome 1q (2012) (66)
- Regulation of Mitochondrial Biogenesis by Lipoprotein Lipase in Muscle of Insulin-Resistant Offspring of Parents With Type 2 Diabetes (2012) (65)
- Integrating GWASs and human protein interaction networks identifies a gene subnetwork underlying alcohol dependence. (2013) (65)
- A reservoir of stem-like CD8+ T cells in the tumor-draining lymph node preserves the ongoing antitumor immune response (2021) (65)
- Genome-Wide Association Study of Nicotine Dependence in American Populations: Identification of Novel Risk Loci in Both African-Americans and European-Americans (2015) (65)
- DNA co-methylation modules in postmortem prefrontal cortex tissues of European Australians with alcohol use disorders (2016) (65)
- Asymptotic efficiency and finite-sample properties of the generalized profiling estimation of parameters in ordinary differential equations (2009) (64)
- Assessing reliability of gene clusters from gene expression data (2000) (63)
- Epigenome-wide differential DNA methylation between HIV-infected and uninfected individuals (2016) (63)
- Genetic Risk Variants Associated With Comorbid Alcohol Dependence and Major Depression (2017) (63)
- Hematopoietic mosaic chromosomal alterations increase the risk for diverse types of infection (2021) (61)
- Validating a 52-gene risk profile for outcome prediction in Idiopathic Pulmonary Fibrosis: an international multicentre cohort study (2017) (61)
- Comparative performances of machine learning methods for classifying Crohn Disease patients using genome-wide genotyping data (2019) (61)
- Genome-wide Association Study of Maximum Habitual Alcohol Intake in >140,000 U.S. European and African American Veterans Yields Novel Risk Loci (2019) (60)
- Pervasive pleiotropy between psychiatric disorders and immune disorders revealed by integrative analysis of multiple GWAS (2015) (60)
- A Tiling Microarray Expression Analysis of Rice Chromosome 4 Suggests a Chromosome-Level Regulation of Transcriptionw⃞ (2005) (60)
- Shrinkage‐based Diagonal Discriminant Analysis and Its Applications in High‐Dimensional Data (2009) (59)
- Association of markers in the 3' region of the GluR5 kainate receptor subunit gene to alcohol dependence. (2009) (58)
- Detecting and aligning peaks in mass spectrometry data with applications to MALDI (2006) (58)
- Sparse Estimation of Conditional Graphical Models With Application to Gene Networks (2012) (57)
- Guilt by rewiring: gene prioritization through network rewiring in genome wide association studies. (2014) (56)
- A Genome-Wide Analysis of Blue-Light Regulation of Arabidopsis Transcription Factor Gene Expression during Seedling Development1[w] (2003) (56)
- Genomewide Association Study for Maximum Number of Alcoholic Drinks in European Americans and African Americans. (2015) (56)
- Effects of a novel tylophorine analog on collagen-induced arthritis through inhibition of the innate immune response. (2006) (55)
- Genetic Architecture of a Rice Nested Association Mapping Population (2017) (55)
- Genome-Wide Association Study of Alcohol Dependence Implicates KIAA0040 on Chromosome 1q (2012) (55)
- Sparse principal component analysis by choice of norm (2013) (55)
- Androgen Regulates SARS-CoV-2 Receptor Levels and Is Associated with Severe COVID-19 Symptoms in Men (2020) (55)
- Evidence for association between multiple complement pathway genes and AMD (2007) (54)
- PathMAPA: a tool for displaying gene expression and performing statistical tests on metabolic pathways at multiple levels for Arabidopsis (2003) (54)
- Bayesian error analysis model for reconstructing transcriptional regulatory networks. (2006) (53)
- Increased ratio of anti-apoptotic to pro-apoptotic Bcl2 gene-family members in lithium-responders one month after treatment initiation (2012) (53)
- The kinases MEKK2 and MEKK3 regulate transforming growth factor-β-mediated helper T cell differentiation. (2011) (53)
- Sample size needed to detect gene-gene interactions using association designs. (2003) (53)
- PSMIX: an R package for population structure inference via maximum likelihood method (2006) (53)
- A Novel, Functional and Replicable Risk Gene Region for Alcohol Dependence Identified by Genome-Wide Association Study (2011) (53)
- Quantitative trait loci in Anopheles gambiae controlling the encapsulation response against Plasmodium cynomolgi Ceylon (2003) (53)
- Genome‐wide association study of N370S homozygous Gaucher disease reveals the candidacy of CLN8 gene as a genetic modifier contributing to extreme phenotypic variation (2012) (52)
- Increased peripheral blood expression of electron transport chain genes in bipolar depression. (2010) (52)
- Crosstalk between Fgf and Wnt signaling in the zebrafish tailbud. (2012) (52)
- Microarrays (2009) (51)
- Noninvasive analysis of the sputum transcriptome discriminates clinical phenotypes of asthma. (2015) (51)
- A Multipurpose, High-Throughput Single-Nucleotide Polymorphism Chip for the Dengue and Yellow Fever Mosquito, Aedes aegypti (2015) (51)
- On the use of DNA pooling to estimate haplotype frequencies (2003) (51)
- Joint modeling of genetically correlated diseases and functional annotations increases accuracy of polygenic risk prediction (2017) (51)
- Haplotype block structures show significant variation among populations (2004) (50)
- A review of study designs and statistical methods for genomic epidemiology studies using next generation sequencing (2015) (50)
- Single-cell multi-omics reveals dyssynchrony of the innate and adaptive immune system in progressive COVID-19 (2020) (49)
- Asymptotically Normal and Efficient Estimation of Covariate-Adjusted Gaussian Graphical Model (2013) (49)
- On high-dimensional misspecified mixed model analysis in genome-wide association study (2016) (48)
- Two-Stage Designs in Case–Control Association Analysis (2006) (48)
- HUPAN: a pan-genome analysis pipeline for human genomes (2019) (47)
- A Frameshift in CSF2RB Predominant Among Ashkenazi Jews Increases Risk for Crohn's Disease and Reduces Monocyte Signaling via GM-CSF. (2016) (47)
- Further clarification of the contribution of the ADH1C gene to vulnerability of alcoholism and selected liver diseases (2012) (47)
- Modeling gene regulation networks using ordinary differential equations. (2012) (46)
- A novel mechanism of LIN-28 regulation of let-7 microRNA expression revealed by in vivo HITS-CLIP in C. elegans (2015) (46)
- Profiling of Childhood Adversity-Associated DNA Methylation Changes in Alcoholic Patients and Healthy Controls (2013) (46)
- Author Correction: Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations (2019) (45)
- A biphasic pattern of gene expression during mouse retina development (2006) (45)
- Expression of the type 3 InsP3 receptor is a final common event in the development of hepatocellular carcinoma (2019) (45)
- Catalase deletion promotes prediabetic phenotype in mice (2017) (45)
- Quantitative Proteomics of Caveolin-1-regulated Proteins (2010) (45)
- Pathway analysis using random forests with bivariate node-split for survival outcomes (2010) (44)
- GenoWAP: GWAS signal prioritization through integrated analysis of genomic functional annotation (2016) (44)
- Building pathway clusters from Random Forests classification using class votes (2008) (44)
- The impacts of errors in individual genotyping and DNA pooling on association studies (2004) (44)
- Practical guidelines for assessing power and false discovery rate for a fixed sample size in microarray experiments (2008) (44)
- Improved risk prediction for Crohn's disease with a multi-locus approach. (2011) (44)
- A non-parametric approach to population structure inference using multilocus genotypes (2006) (44)
- Extensive sequence variation in the 3′ untranslated region of the KRAS gene in lung and ovarian cancer cases (2014) (43)
- An obesity-related locus in chromosome region 12q23-24. (2004) (43)
- Implications of pleiotropy: challenges and opportunities for mining Big Data in biomedicine (2015) (42)
- Flexible and scalable genotyping-by-sequencing strategies for population studies (2014) (42)
- Joint analysis of expression profiles from multiple cancers improves the identification of microRNA-gene interactions (2013) (42)
- Identification of methylation quantitative trait loci (mQTLs) influencing promoter DNA methylation of alcohol dependence risk genes (2014) (41)
- Accounting for non-genetic factors by low-rank representation and sparse regression for eQTL mapping (2013) (41)
- Utilizing protein structure to identify non-random somatic mutations (2013) (41)
- Imputing Genotypes in Biallelic Populations from Low-Coverage Sequence Data (2015) (40)
- Family-based association studies (2000) (40)
- Handling multiple testing while interpreting microarrays with the Gene Ontology Database (2004) (39)
- Germline variant burden in cancer genes correlates with age at diagnosis and somatic mutation burden (2020) (39)
- The genetics of functional disability in schizophrenia and bipolar illness: Methods and initial results for VA cooperative study #572 (2014) (38)
- A unified framework for cross-population trait prediction by leveraging the genetic correlation of polygenic traits. (2021) (38)
- Genomewide Association Study of Alcohol Dependence Identifies Risk Loci Altering Ethanol‐Response Behaviors in Model Organisms (2017) (38)
- A genome-wide gene-by-trauma interaction study of alcohol misuse in two independent cohorts identifies PRKG1 as a risk locus (2017) (38)
- Correlation of Global MicroRNA Expression With Basal Cell Carcinoma Subtype (2012) (38)
- Genome-Wide Association Study of Copy Number Variations (CNVs) with Opioid Dependence (2015) (37)
- Linkage and linkage disequilibrium mapping of genes influencing human obesity in chromosome region 7q22.1-7q35. (2003) (37)
- An Arabidopsis Promoter Microarray and its Initial Usage in the Identification of HY5 Binding Targets in Vitro (2004) (37)
- Simultaneous dimension reduction and adjustment for confounding variation (2016) (37)
- Noninvasive Analysis of the Sputum Transcriptome Discriminates Clinical Phenotypes of Asthma. (2016) (37)
- Greedy outcome weighted tree learning of optimal personalized treatment rules (2017) (37)
- A Dirichlet‐tree multinomial regression model for associating dietary nutrients with gut microorganisms (2017) (37)
- Pathway analysis comparison using Crohn's disease genome wide association studies (2010) (36)
- Community identification in networks with unbalanced structure. (2012) (36)
- NBLDA: negative binomial linear discriminant analysis for RNA-Seq data (2015) (36)
- Co-occurrence of Risk Alleles in or Near Genes Modulating Insulin Secretion Predisposes Obese Youth to Prediabetes (2014) (36)
- Genomic influences on self-reported childhood maltreatment (2019) (35)
- Statistical Power of Model Selection Strategies for Genome-Wide Association Studies (2009) (35)
- Genome-wide association study of smoking trajectory and meta-analysis of smoking status in 842,000 individuals (2020) (35)
- Time Series Expression Analyses Using RNA-seq: A Statistical Approach (2013) (35)
- The Interplay Between Risky Sexual Behaviors and Alcohol Dependence: Genome-Wide Association and Neuroimaging Support for LHPP as a Risk Gene (2017) (35)
- Interactions between Enhanced Polygenic Risk Scores and Lifestyle for Cardiovascular Disease, Diabetes Mellitus and Lipid Levels. (2021) (35)
- Proteomics and the Analysis of Proteomic Data: An Overview of Current Protein‐Profiling Technologies (2005) (34)
- On joint estimation of Gaussian graphical models for spatial and temporal data (2015) (34)
- Weighted random subspace method for high dimensional data classification. (2009) (33)
- Methylation in OTX2 and related genes, maltreatment, and depression in children (2018) (33)
- A graph theoretic approach to utilizing protein structure to identify non-random somatic mutations (2013) (33)
- gCoda: Conditional Dependence Network Inference for Compositional Data (2017) (33)
- Integrating multidimensional omics data for cancer outcome. (2016) (33)
- Integrating domain knowledge with statistical and data mining methods for high-density genomic SNP disease association analysis (2007) (33)
- Differentially co-expressed genes in postmortem prefrontal cortex of individuals with alcohol use disorders: influence on alcohol metabolism-related pathways (2014) (33)
- Extended haplotype association study in Crohn’s disease identifies a novel, Ashkenazi Jewish-specific missense mutation in the NF-κB pathway gene, HEATR3 (2013) (32)
- VitaPad: visualization tools for the analysis of pathway data (2005) (32)
- SomatiCA: Identifying, Characterizing and Quantifying Somatic Copy Number Aberrations from Cancer Genome Sequencing Data (2013) (32)
- Human Macrophage Response to L. (Viannia) panamensis: Microarray Evidence for an Early Inflammatory Response (2012) (32)
- Factor structure of cognition and functional capacity in two studies of schizophrenia and bipolar disorder: Implications for genomic studies. (2016) (31)
- Detection boundary and Higher Criticism approach for rare and weak genetic effects (2014) (31)
- DNA methylation signatures of illicit drug injection and hepatitis C are associated with HIV frailty (2017) (31)
- SUPERGNOVA: local genetic correlation analysis reveals heterogeneous etiologic sharing of complex traits (2020) (31)
- Adverse Childhood Experiences, Epigenetic Measures, and Obesity in Youth (2018) (31)
- Bias‐Corrected Diagonal Discriminant Rules for High‐Dimensional Classification (2010) (31)
- Machine learning selected smoking-associated DNA methylation signatures that predict HIV prognosis and mortality (2018) (31)
- Evaluation of light regulatory potential of Calvin cycle steps based on large-scale gene expression profiling data (2003) (30)
- Acute Drug-Induced Vascular Injury in Beagle Dogs: Pathology and Correlating Genomic Expression (2006) (30)
- A semiparametric approach for marker gene selection based on gene expression data (2005) (30)
- Functional Module Analysis for Gene Coexpression Networks with Network Integration (2015) (30)
- Protein interaction predictions from diverse sources. (2008) (30)
- Stress-related alcohol consumption in heavy drinkers correlates with expression of miR-10a, miR-21, and components of the TAR-RNA-binding protein-associated complex. (2014) (30)
- Handbook of Statistical Bioinformatics (2011) (29)
- Characterization of a likelihood based method and effects of markers informativeness in evaluation of admixture and population group assignment (2005) (29)
- Multiple Peak Alignment in Sequential Data Analysis: A Scale-Space-Based Approach (2006) (29)
- Mutations in the Histone Modifier PRDM6 Are Associated with Isolated Nonsyndromic Patent Ductus Arteriosus. (2016) (29)
- Empirical Bayes Correction for the Winner's Curse in Genetic Association Studies (2013) (28)
- M3: an improved SNP calling algorithm for Illumina BeadArray data (2012) (28)
- Parametric and Nonparametric FDR Estimation Revisited (2006) (28)
- Biases and Errors on Allele Frequency Estimation and Disease Association Tests of Next‐Generation Sequencing of Pooled Samples (2012) (28)
- iFad: an integrative factor analysis model for drug-pathway association inference (2012) (27)
- Test of Association for Quantitative Traits in General Pedigrees: The Quantitative Pedigree Disequilibrium Test (2001) (27)
- Structured subcomposition selection in regression and its application to microbiome data analysis (2017) (27)
- Protein quantitation using iTRAQ: Review on the sources of variations and analysis of nonrandom missingness. (2012) (26)
- Combining newborn metabolic and DNA analysis for second-tier testing of methylmalonic acidemia (2018) (26)
- Gene Regulation Network Inference With Joint Sparse Gaussian Graphical Models (2015) (26)
- Differential expression analysis for paired RNA-seq data (2013) (26)
- Erratum to "A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data": [Comput. Biol. Chem. 29(2005) 47-54] (2005) (26)
- Bayesian Analysis of iTRAQ Data with Nonrandom Missingness: Identification of Differentially Expressed Proteins (2009) (26)
- A Genome‐Wide Association Study to Identify Single‐Nucleotide Polymorphisms for Acute Kidney Injury (2017) (26)
- Joint conditional Gaussian graphical models with multiple sources of genomic data (2013) (26)
- Leveraging effect size distributions to improve polygenic risk scores derived from summary statistics of genome-wide association studies (2020) (26)
- A comparison of several methods for haplotype frequency estimation and haplotype reconstruction for tightly linked markers from general pedigrees (2006) (26)
- SUPERGNOVA: local genetic correlation analysis reveals heterogeneous etiologic sharing of complex traits (2021) (26)
- A comparison of graph- and kernel-based –omics data integration algorithms for classifying complex traits (2017) (25)
- Constructing Predictive Microbial Signatures at Multiple Taxonomic Levels (2017) (25)
- Identification of Genes Critical for Resistance to Infection by West Nile Virus Using RNA-Seq Analysis (2013) (25)
- Multisample aCGH Data Analysis via Total Variation and Spectral Regularization (2013) (25)
- Statistical methods to infer cooperative binding among transcription factors in Saccharomyces cerevisiae (2008) (25)
- Dissecting ancestry genomic background in substance dependence genome-wide association studies. (2015) (25)
- Genetic Association of Finger Photoplethysmography-Derived Arterial Stiffness Index With Blood Pressure and Coronary Artery Disease. (2019) (25)
- The impact of sample size and marker selection on the study of haplotype structures (2004) (25)
- Validation of an Electronic Medical Record-Based Algorithm for Identifying Posttraumatic Stress Disorder in U.S. Veterans. (2019) (25)
- Genetic distribution of 39 STR loci in 1027 unrelated Han individuals from Northern China. (2015) (25)
- Reducing False-Positive Results in Newborn Screening Using Machine Learning (2020) (25)
- Effector CD4+ T Cell Expression Signatures and Immune-Mediated Disease Associated Genes (2012) (24)
- Impaired Toll-Like Receptor 3-Mediated Immune Responses from Macrophages of Patients Chronically Infected with Hepatitis C Virus (2012) (24)
- Bayesian Methods for Predicting Interacting Protein Pairs Using Domain Information (2007) (24)
- A genome wide association study of plasma uric acid levels in obese cases and never-overweight controls (2013) (24)
- YMD: a microarray database for large-scale gene expression analysis (2002) (23)
- Toll-like receptor 9 negatively regulates pancreatic islet beta cell growth and function in a mouse model of type 1 diabetes (2018) (23)
- Loneliness 5 years ante-mortem is associated with disease-related differential gene expression in postmortem dorsolateral prefrontal cortex (2018) (23)
- Genomic Comparison Among Global Isolates of L. interrogans Serovars Copenhageni and Icterohaemorrhagiae Identified Natural Genetic Variation Caused by an Indel (2018) (23)
- On optimal pooling designs to identify rare variants through massive resequencing (2011) (23)
- A spatial simulation approach to account for protein structure when identifying non-random somatic mutations (2013) (23)
- FacPad: Bayesian sparse factor modeling for the inference of pathways responsive to drug treatment (2012) (23)
- Genotyping error detection through tightly linked markers. (2003) (23)
- Inherited Causes of Clonal Hematopoiesis of Indeterminate Potential in TOPMed Whole Genomes (2019) (23)
- A statistical method to detect chromosomal regions with DNA copy number alterations using SNP-array-based CGH data (2005) (22)
- Genome‐wide association study of body mass index in subjects with alcohol dependence (2017) (22)
- Gut Microbiome Associated with the Psychoneurological Symptom Cluster in Patients with Head and Neck Cancers (2020) (22)
- Considering dependence among genes and markers for false discovery control in eQTL mapping (2008) (22)
- Largest genome-wide association study for PTSD identifies genetic risk loci in European and African ancestries and implicates novel biological pathways (2018) (22)
- Are scale-free networks robust to measurement errors? (2005) (21)
- Improving mass spectrometry peak detection using multiple peak alignment results. (2008) (21)
- Inherited causes of clonal haematopoiesis in 97,691 whole genomes (2020) (21)
- Normalized modularity optimization method for community identification with degree adjustment. (2013) (21)
- Association of COL25A1 with Comorbid Antisocial Personality Disorder and Substance Dependence (2012) (21)
- CD4+ follicular regulatory T cells optimize the influenza virus–specific B cell response (2020) (21)
- Variable importance-weighted random forests (2017) (21)
- AUDIT‐C and ICD codes as phenotypes for harmful alcohol use: association with ADH1B polymorphisms in two US populations (2018) (21)
- DIAPH1 Variants in Non-East Asian Patients With Sporadic Moyamoya Disease. (2021) (21)
- Deep resequencing of 17 glutamate system genes identifies rare variants in DISC1 and GRIN2B affecting risk of opioid dependence (2014) (21)
- Haplotype Frequency Estimation in the Presence of Genotyping Errors (2003) (21)
- Altered expression of cytokine signaling pathway genes in peripheral blood cells of alcohol dependent subjects: preliminary findings. (2012) (21)
- Statistical Analysis Reveals Co-Expression Patterns of Many Pairs of Genes in Yeast Are Jointly Regulated by Interacting Loci (2013) (21)
- A common variant in the Melatonin Receptor 1B gene (MTNR1B) is associated with increased risk of impaired fasting glucose (IFG) in obese youth (2014) (21)
- Rare deleterious mutations of the gene EFR3A in autism spectrum disorders (2014) (21)
- Practical Issues in Building Risk-Predicting Models for Complex Diseases (2010) (20)
- The complete compositional epistasis detection in genome-wide association studies (2013) (20)
- Negative correlation between compositional symmetries and local recombination rates (2005) (20)
- A pathway analysis applied to Genetic Analysis Workshop 16 genome-wide rheumatoid arthritis data (2009) (20)
- Statistical Methods In Proteomics (2006) (20)
- Mapping the Interactome of a Major Mammalian Endoplasmic Reticulum Heat Shock Protein 90 (2017) (20)
- Predicting synergistic effects between compounds through their structural similarity and effects on transcriptomes (2016) (20)
- Shared Genetic Risk between Eating Disorder- and Substance-Use-Related Phenotypes: Evidence from Genome-Wide Association Studies (2019) (20)
- Deep Learning of the Retina Enables Phenome- and Genome-Wide Analyses of the Microvasculature (2021) (20)
- Bayesian semiparametric regression models for evaluating pathway effects on continuous and binary clinical outcomes (2012) (20)
- Genome‐wide association meta‐analysis of age at first cannabis use (2018) (19)
- Prediction of pattern recognition receptor family using pseudo-amino acid composition. (2012) (19)
- Genomic Characterization of Posttraumatic Stress Disorder in a Large US Military Veteran Sample (2019) (18)
- Molecular genetic overlap between posttraumatic stress disorder and sleep phenotypes. (2019) (18)
- A STATISTICAL FRAMEWORK FOR DATA INTEGRATION THROUGH GRAPHICAL MODELS WITH APPLICATION TO CANCER GENOMICS. (2017) (18)
- Identification of association between disease and multiple markers via sparse partial least‐squares regression (2011) (18)
- MSClust: A Multi-Seeds based Clustering algorithm for microbiome profiling using 16S rRNA sequence. (2013) (18)
- Improved mean estimation and its application to diagonal discriminant analysis (2012) (18)
- The role of the gut microbiome in cancer-related fatigue: pilot study on epigenetic mechanisms (2020) (18)
- Drug target inference through pathway analysis of genomics data. (2013) (18)
- Estimating a sparse reduction for general regression in high dimensions (2018) (17)
- Selecting SNPs to Identify Ancestry (2011) (17)
- Exploring the genetic architecture of alcohol dependence in African-Americans via analysis of a genomewide set of common variants (2014) (17)
- Epigenetic age acceleration, fatigue, and inflammation in patients undergoing radiation therapy for head and neck cancer: A longitudinal study (2021) (17)
- Comparison of methods for estimating genetic correlation between complex traits using GWAS summary statistics (2020) (17)
- Divergence in a master variator generates distinct phenotypes and transcriptional responses (2014) (16)
- Controlling Population Structure in Human Genetic Association Studies with Samples of Unrelated Individuals. (2011) (16)
- Ancestry‐specific and sex‐specific risk alleles identified in a genome‐wide gene‐by‐alcohol dependence interaction study of risky sexual behaviors (2017) (16)
- Genomic approaches in dissecting complex biological pathways. (2004) (16)
- Ovarian Cancer Classification based on Mass Spectrometry Analysis of Sera (2006) (16)
- Genetic factor common to schizophrenia and HIV infection is associated with risky sexual behavior: antagonistic vs. synergistic pleiotropic SNPs enriched for distinctly different biological functions (2016) (16)
- Reconstructing transcriptional regulatory networks through genomics data. (2009) (16)
- Nonparametric estimator of false discovery rate based on Bernšteǐn polynomials (2008) (16)
- Transcriptomic analysis and plasma metabolomics in Aldh16a1-null mice reveals a potential role of ALDH16A1 in renal function. (2017) (16)
- Bayesian Semi-parametric Design (BSD) for adaptive dose-finding with multiple strata (2020) (16)
- A Set of Efficient Methods to Generate High-Dimensional Binary Data With Specified Correlation Structures (2020) (16)
- Benchmarking variant identification tools for plant diversity discovery (2019) (16)
- Data-Independent Acquisition and Parallel Reaction Monitoring Mass Spectrometry Identification of Serum Biomarkers for Ovarian Cancer (2017) (16)
- Comprehensive in silico functional specification of mouse retina transcripts (2005) (15)
- Cytokine Profiles Before and After Immune Modulation in Hospitalized Patients with COVID-19 (2021) (15)
- Translational studies support a role for serotonin 2B receptor (HTR2B) gene in aggression-related cannabis response (2018) (15)
- Putting things in order (2014) (15)
- Haplotype analysis in the presence of informatively missing genotype data (2006) (15)
- On a Family-Based Haplotype Pattern Mining Method for Linkage Disequilibrium Mapping (2001) (15)
- Validating Harmful Alcohol Use as a Phenotype for Genetic Discovery Using Phosphatidylethanol and a Polymorphism in ADH1B (2017) (15)
- A MARKOV RANDOM FIELD-BASED APPROACH TO CHARACTERIZING HUMAN BRAIN DEVELOPMENT USING SPATIAL-TEMPORAL TRANSCRIPTOME DATA. (2015) (15)
- A comprehensive genetic and epidemiological association analysis of vitamin D with common diseases/traits in the UK Biobank (2020) (15)
- Author Correction: Genome-wide association study of alcohol consumption and use disorder in 274,424 individuals from multiple populations (2019) (15)
- Cytogenomic mapping and bioinformatic mining reveal interacting brain expressed genes for intellectual disability (2014) (14)
- The application of sparse estimation of covariance matrix to quadratic discriminant analysis (2015) (14)
- graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architecture (2017) (14)
- Overview of PAX gene family: analysis of human tissue-specific variant expression and involvement in human disease (2020) (14)
- Trans-heterozygous Pkd 1 and Pkd 2 mutations modify expression of polycystic kidney disease (2002) (14)
- Ethnic variability in newborn metabolic screening markers associated with false‐positive outcomes (2020) (14)
- Elevated Blood Pressure Increases Pneumonia Risk: Epidemiological Association and Mendelian Randomization in the UK Biobank (2020) (14)
- Genome‐wide association study of cognitive performance in U.S. veterans with schizophrenia or bipolar disorder (2019) (14)
- BAYESIAN HIERARCHICAL MODELING FOR SIGNALING PATHWAY INFERENCE FROM SINGLE CELL INTERVENTIONAL DATA. (2011) (13)
- Identifying Gene–Environment and Gene–Gene Interactions Using a Progressive Penalization Approach (2014) (13)
- Reverse Engineering of Gene Regulation Networks with an Application to the DREAM4 in silico Network Challenge (2011) (13)
- Genomic analyses of African Trypanozoon strains to assess evolutionary relationships and identify markers for strain identification (2017) (13)
- NITUMID: Nonnegative matrix factorization-based Immune-TUmor MIcroenvironment Deconvolution (2019) (13)
- Admixture mapping analysis in the context of GWAS with GAW18 data (2014) (13)
- Whole-genome linkage analysis in mapping alcoholism genes using single-nucleotide polymorphisms and microsatellites (2005) (12)
- Gene hunting of the Genetic Analysis Workshop 16 rheumatoid arthritis data using rough set theory (2009) (12)
- Semantic Web-Based Integration of Cancer Pathways and Allele Frequency Data (2009) (12)
- Risk Locus Identification Ties Alcohol Withdrawal Symptoms to SORCS2 (2018) (12)
- Linkage disequilibrium mapping with genotype data (2002) (12)
- Sparse Regression by Projection and Sparse Discriminant Analysis (2015) (12)
- Gene expression analysis reveals that histone deacetylation sites may serve as partitions of chromatin gene expression domains (2005) (12)
- Transcriptional Profiling of Ectoderm Specification to Keratinocyte Fate in Human Embryonic Stem Cells (2015) (12)
- On the Convergence of the EM Algorithm: A Data-Adaptive Analysis (2016) (12)
- A New Approach for the Joint Analysis of Multiple Chip-Seq Libraries with Application to Histone Modification (2012) (12)
- Timing of Newborn Blood Collection Alters Metabolic Disease Screening Performance (2021) (12)
- Enhancing Discovery of Genetic Variants for Posttraumatic Stress Disorder Through Integration of Quantitative Phenotypes and Trauma Exposure Information (2021) (12)
- Transcriptome-wide association analysis of brain structures yields insights into pleiotropy with complex neuropsychiatric traits (2021) (12)
- Linkage disequilibrium mapping in populations of variable size using the decay of haplotype sharing and a stepwise‐mutation model (2000) (12)
- Analyzing Association Mapping in Pedigree‐Based GWAS Using a Penalized Multitrait Mixed Model (2016) (11)
- Random Effects Model for Multiple Pathway Analysis with Applications to Type II Diabetes Microarray Data (2015) (11)
- Evidence of Polygenic Adaptation in the Systems Genetics of Anthropometric Traits (2016) (11)
- DNA-protein binding and gene expression patterns (2003) (11)
- Mendelian randomization for causal inference accounting for pleiotropy and sample structure using genome-wide summary statistics (2022) (11)
- Family‐Based Association Tests for Different Family Structures Using Pooled DNA (2005) (11)
- The Power of Transmission Disequilibrium Tests for Quantitative Traits (2001) (11)
- Disease-drug pairs revealed by computational genomic connectivity mapping on GBA1 deficient, Gaucher disease mice (2012) (11)
- Genome-Wide Interaction Study Identifies RCBTB1 as a Modifier for Smoking Effect on Carotid Intima-Media Thickness (2014) (11)
- Statistical properties on semiparametric regression for evaluating pathway effects. (2013) (11)
- Detecting Epistatic SNPs Associated with Complex Diseases via a Bayesian Classification Tree Search Method (2011) (11)
- Measuring genetic variation in the multi-ethnic Million Veteran Program (MVP) (2020) (11)
- A Dirichlet process mixture model for clustering longitudinal gene expression data (2016) (11)
- Fibrillar Collagen Variants in Spontaneous Coronary Artery Dissection. (2022) (10)
- DETECTING GENETIC ASSOCIATION IN CASE-CONTROL STUDIES USING SIMILARITY-BASED ASSOCIATION TESTS (2002) (10)
- MALDI-MS data analysis for disease biomarker discovery. (2006) (10)
- S100A10 identified in a genome-wide gene × cannabis dependence interaction analysis of risky sexual behaviours (2017) (10)
- Impact of genotyping errors on statistical power of association tests in genomic analyses: A case study (2017) (10)
- Some theoretical properties of Silverman's method for Smoothed functional principal component analysis (2011) (10)
- An empirical Bayes approach to normalization and differential abundance testing for microbiome data (2020) (10)
- The immunology of Parkinson’s disease (2022) (10)
- Novel genetic variants modify the effect of smoking on carotid plaque burden in Hispanics (2014) (9)
- Posterior Contraction Rates of the Phylogenetic Indian Buffet Processes. (2013) (9)
- Adaptive clinical trial designs to detect interaction between treatment and a dichotomous biomarker (2013) (9)
- Two-stage joint selection method to identify candidate markers from genome-wide association studies (2009) (9)
- Prediction analysis for microbiome sequencing data (2017) (9)
- Leveraging functional annotation to identify genes associated with complex diseases (2019) (9)
- Use of Bayesian networks to dissect the complexity of genetic disease: application to the Genetic Analysis Workshop 17 simulated data (2011) (9)
- Identification of human circadian genes based on time course gene expression profiles by using a deep learning method. (2017) (9)
- Estimating the proportion of true null hypotheses using the pattern of observed p-values (2013) (9)
- A fast and robust Bayesian nonparametric method for prediction of complex traits using summary statistics (2020) (9)
- Score regularization for peptide identification (2011) (9)
- Association of epigenetic age acceleration with risk factors, survival, and quality of life in patients with head and neck cancer. (2021) (9)
- Genetic Link Between Arterial Stiffness and Atrial Fibrillation. (2019) (9)
- Network Clustering Analysis Using Mixture Exponential-Family Random Graph Models and Its Application in Genetic Interaction Data (2019) (9)
- Penetrance and Pleiotropy of Polygenic Risk Scores for Schizophrenia, Bipolar Disorder, and Depression Among Adults in the US Veterans Affairs Health Care System (2022) (9)
- Effects of Genetic Variants Associated with Familial Hypercholesterolemia on Low-Density Lipoprotein-Cholesterol Levels and Cardiovascular Outcomes in the Million Veteran Program (2018) (8)
- Circular RNA hsa_circ_0005556 Accelerates Gastric Cancer Progression by Sponging miR-4270 to Increase MMP19 Expression (2020) (8)
- Predicting readmission stroke type among blacks and whites in California. (2005) (8)
- A fast and robust Bayesian nonparametric method for prediction of complex traits using summary statistics. (2021) (8)
- Genotyping and inflated type I error rate in genome-wide association case/control studies (2009) (8)
- The estimation of sibling genetic risk parameters revisited (2004) (8)
- Genetic susceptibility to hepatocellular carcinoma in chromosome 22q13.31, findings of a genome‐wide association study (2021) (8)
- Pilot study of combined aerobic and resistance exercise on fatigue for patients with head and neck cancer: Inflammatory and epigenetic changes (2020) (8)
- Toll-like receptor 7 deficiency suppresses type 1 diabetes development by modulating B-cell differentiation and function (2021) (8)
- Collapsing-based and kernel-based single-gene analyses applied to Genetic Analysis Workshop 17 mini-exome data (2011) (8)
- Polygenic risk score, healthy lifestyles, and risk of incident depression (2021) (8)
- Gene-based and pathway-based genome-wide association study of alcohol dependence (2015) (8)
- Using DNA methylation to validate an electronic medical record phenotype for smoking (2018) (8)
- BoXHED: Boosted eXact Hazard Estimator with Dynamic covariates (2020) (8)
- Efficient Drug-Pathway Association Analysis via Integrative Penalized Matrix Decomposition (2016) (7)
- A Manifold Proximal Linear Method for Sparse Spectral Clustering with Application to Single-Cell RNA Sequencing Data Analysis (2020) (7)
- Studying the evolution of transcription factor binding events using multi-species ChIP-Seq data (2013) (7)
- On the Convergence of the EM Algorithm: From the Statistical Perspective (2016) (7)
- Using a Pharmacokinetic Model to Relate an Individual’s Susceptibility to Alcohol Dependence to Genotypes (2010) (7)
- Ttn as a likely causal gene for QTL of alcohol preference on mouse chromosome 2 (2014) (7)
- Improving SNP prioritization and pleiotropic architecture estimation by incorporating prior knowledge using graph-GPA (2018) (7)
- Use of a Targeted Urine Proteome Assay (TUPA) to identify protein biomarkers of delayed recovery after kidney transplant (2017) (7)
- Model-Based Microbiome Data Ordination: A Variational Approximation Approach (2021) (7)
- Regularized Latent Class Model for Joint Analysis of High‐Dimensional Longitudinal Biomarkers and a Time‐to‐Event Outcome (2018) (7)
- The role of heritability in mapping expression quantitative trait loci (2007) (7)
- High-dimensional genome-wide association study and misspecified mixed model analysis (2014) (7)
- Hematopoietic mosaic chromosomal alterations and risk for infection among 767,891 individuals without blood cancer (2020) (7)
- On Relationship Inference Using Gamete Identity by Descent Data (2001) (7)
- Impact of Sixteen Established Pancreatic Cancer Susceptibility Loci in American Jews (2017) (7)
- A reservoir of stem-like CD8 T cells in the tumor-draining lymph node maintains the ongoing anti-tumor immune response (2020) (7)
- Genotyping Error Detection in Samples of Unrelated Individuals without Replicate Genotyping (2008) (7)
- Dissecting Pathway Disturbances Using Network Topology and Multi-platform Genomics Data (2018) (6)
- A Phenome-Wide Association Study of genes associated with COVID-19 severity reveals shared genetics with complex diseases in the Million Veteran Program (2021) (6)
- Uncovering Genomic Regions Associated with Trypanosoma Infections in Wild Populations of the Tsetse Fly Glossina fuscipes (2018) (6)
- MR-APSS: a unified approach to Mendelian Randomization accounting for pleiotropy and sample structure using genome-wide summary statistics (2021) (6)
- Phylogenetic Indian Buffet Process: Theory and Applications in Integrative Analysis of Cancer Genomics (2013) (6)
- Large-scale risk prediction applied to Genetic Analysis Workshop 17 mini-exome sequence data (2011) (6)
- Genomics of posttraumatic stress disorder in veterans: Methods and rationale for Veterans Affairs Cooperative Study #575B (2019) (6)
- Leveraging protein quaternary structure to identify oncogenic driver mutations (2016) (6)
- Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use (2019) (6)
- A Markov random field-based approach for joint estimation of differentially expressed genes in mouse transcriptome data (2016) (6)
- TLR9 Deficiency in B Cells Promotes Immune Tolerance via Interleukin-10 in a Type 1 Diabetes Mouse Model (2020) (6)
- GRAPE: a pathway template method to characterize tissue-specific functionality from gene expression profiles (2017) (6)
- Differential Protein Expression in Striatal D1- and D2-Dopamine Receptor-Expressing Medium Spiny Neurons (2020) (6)
- Sample Size Needed to Detect Gene‐Gene Interactions Using Linkage Analysis (2007) (5)
- Correction: A Genome-Wide Association Study on Obesity and Obesity-Related Traits (2012) (5)
- A Phenome-Wide Association Study of genes associated with COVID-19 severity reveals shared genetics with complex diseases in the Million Veteran Program (2022) (5)
- Transformation and differential abundance analysis of microbiome data incorporating phylogeny (2021) (5)
- Transcriptomic Organization of Human Posttraumatic Stress Disorder (2020) (5)
- Identifying Individuals in a Complex Mixture of DNA with Unknown Ancestry (2009) (5)
- Genomics of Gulf War Illness in U.S. Veterans Who Served during the 1990–1991 Persian Gulf War: Methods and Rationale for Veterans Affairs Cooperative Study #2006 (2021) (5)
- A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometry (2007) (5)
- Integrative Functional Genomic Analysis of Human PTSD Molecular Pathology and Risk (2021) (5)
- NTAP: for NimbleGen tiling array ChIP-chip data analysis (2009) (5)
- Elevated methylmalonic acidemia (MMA) screening markers in Hispanic and preterm newborns (2018) (5)
- Data Pre-Processing for Label-Free Multiple Reaction Monitoring (MRM) Experiments (2014) (5)
- Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use. (2019) (5)
- 159. GWAS of PTSD Re-experiencing Symptoms in the VA Million Veteran Program (2018) (5)
- The Impact of Removing Former Drinkers from Genome-wide Association Studies of AUDIT-C. (2021) (5)
- A multi-population phenome-wide association study of genetically-predicted height in the Million Veteran Program (2022) (5)
- SCADIE: simultaneous estimation of cell type proportions and cell type-specific gene expressions using SCAD-based iterative estimating procedure (2022) (4)
- Integrating Multidimensional Data for Clustering Analysis With Applications to Cancer Patient Data (2020) (4)
- Stratified Pathway Analysis to Identify Gene Sets Associated with Oral Contraceptive Use and Breast Cancer (2014) (4)
- A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data (2020) (4)
- Whole-genome association studies on alcoholism comparing different phenotypes using single-nucleotide polymorphisms and microsatellites (2005) (4)
- An adaptive independence test for microbiome community data (2019) (4)
- Non-linear archetypal analysis of single-cell RNA-seq data by deep autoencoders (2021) (4)
- Erratum: Mutations in the Histone Modifier PRDM6 Are Associated with Isolated Nonsyndromic Patent Ductus Arteriosus (American Journal of Human Genetics (2016) 98(6) (1082–1091) (S000292971630057X) (10.1016/j.ajhg.2016.03.022)) (2016) (4)
- CHANGE POINT ANALYSIS OF HISTONE MODIFICATIONS REVEALS EPIGENETIC BLOCKS LINKING TO PHYSICAL DOMAINS. (2013) (4)
- Cortical Transcriptomic Alterations in Association With Appetitive Neuropeptides and Body Mass Index in Posttraumatic Stress Disorder (2020) (4)
- Mutations in the Histone Modifier PRDM6 Are Associated with Isolated Nonsyndromic Patent Ductus Arteriosus. (2016) (4)
- HapBoost: A Fast Approach to Boosting Haplotype Association Analyses in Genome-Wide Association Studies (2013) (4)
- A genome-wide gene-by-trauma interaction study of alcohol misuse in two independent cohorts identifies PRKG 1 as a risk locus (2017) (4)
- Low depression frequency is associated with decreased risk of cardiometabolic disease (2022) (4)
- Statistical tests for detecting associations with groups of genetic variants: generalization, evaluation, and implementation (2012) (3)
- Phylogeny-based tumor subclone identification using a Bayesian feature allocation model (2018) (3)
- A Penalized Multi-trait Mixed Model for Association Mapping in Pedigree-based GWAS (2013) (3)
- Case Report: A High Productivity/Low Maintenance Approach to High-performance Computation for Biomedicine: Four Case Studies (2004) (3)
- Bayesian Mass Spectra Peak Alignment from Mass Charge Ratios (2008) (3)
- Integrating mRNA Decay Information into Co-Regulation Study (2005) (3)
- Joint Models for Time-to-Event Data and Longitudinal Biomarkers of High Dimension (2016) (3)
- Response to Dr. Kopke's comments on haplotypes at the OPRM1 locus (2005) (3)
- Author Correction: Mutations disrupting neuritogenesis genes confer risk for cerebral palsy (2021) (3)
- Integrative modeling of transmitted and de novo variants identifies novel risk genes for congenital heart disease. (2021) (3)
- An evaluation of noncoding genome annotation tools through enrichment analysis of 15 genome-wide association studies (2019) (3)
- Posttraumatic Stress Disorder Brain Transcriptomics: Convergent Genomic Signatures Across Biological Sex (2021) (3)
- A Pathway-Based Kernel Boosting Method for Sample Classification Using Genomic Data (2018) (3)
- Integrative Analysis of Membrane Proteome and MicroRNA Reveals Novel Lung Cancer Metastasis Biomarkers (2020) (3)
- GPA: A statistical approach to prioritizing GWAS results by integrating pleiotropy information and annotation data (2014) (3)
- A Bayesian genome screening of maximum number of drinks as an alcoholism phenotype with the new Haseman-Elston method (2005) (3)
- An Evaluation of Gene Module Concepts in the Interpretation of Gene Expression Data (2010) (3)
- Global patterns of linkage disequilibrium in Homo sapiens (2001) (3)
- Mediated pleiotropy between psychiatric disorders and autoimmune disorders revealed by integrative analysis of multiple GWAS (2015) (3)
- Correlating genomic copy number alterations with clinicopathologic findings in 75 cases of hepatocellular carcinoma (2021) (3)
- Conditional Functional Graphical Models (2021) (3)
- CCor: A whole genome network‐based similarity measure between two genes (2016) (3)
- An Obesity-Related Locus in Chromosome Region (2004) (2)
- A HIERARCHICAL BAYESIAN MODEL FOR SINGLE-CELL CLUSTERING USING RNA-SEQUENCING DATA. (2019) (2)
- A penalized linear mixed model for genomic prediction using pedigree structures (2014) (2)
- SCRIBE: a new approach to dropout imputation and batch effects correction for single-cell RNA-seq data (2019) (2)
- Estimating DNA methylation levels by joint modeling of multiple methylation profiles from microarray data (2016) (2)
- Pathway‐Based Methods for Analyzing Microarray Data (2008) (2)
- Post-GWAS Prioritization Through Data Integration Provides Novel Insights on Chronic Obstructive Pulmonary Disease (2017) (2)
- DNA Pooling: Methods and Applications in Association Studies (2007) (2)
- Integrative analyses for the identification of idiopathic pulmonary fibrosis-associated genes and shared loci with other diseases (2022) (2)
- Quantitative Metabolomics Reveals Heart Failure With Midrange Ejection Fraction as a Distinct Phenotype of Heart Failure. (2020) (2)
- Author response: Two locus inheritance of non-syndromic midline craniosynostosis via rare SMAD6 and common BMP2 alleles (2016) (2)
- Comparison of Methods Utilizing Sex-Specific PRSs Derived From GWAS Summary Statistics (2022) (2)
- Modeling Informatively Missing Genotypes in Haplotype Analysis (2009) (2)
- ProteomicsBrowser: MS/proteomics data visualization and investigation (2018) (2)
- Statistical Inference of Cell-type Proportions Estimated from Bulk Expression Data (2022) (2)
- Estimating genetic correlation jointly using individual-level and summary-level GWAS data (2021) (2)
- ON MODEL SELECTION STRATEGIES TO IDENTIFY GENES UNDERLYING BINARY TRAITS USING GENOME-WIDE ASSOCIATION DATA. (2012) (2)
- CSNet: Estimating cell-type-specific gene co-expression networks from bulk gene expression data (2021) (2)
- Transcriptome wide association studies: general framework and methods (2021) (2)
- Massively parallel knock-in engineering of human T cells. (2023) (2)
- DNA methylation signatures analysis with Illumina Infinitum MethylationEPIC and Infinium Human Methylation 450K BeadChip (2017) (2)
- Tumor cell SYK expression modulates the tumor immune microenvironment composition in human cancer via TNF-α dependent signaling (2022) (2)
- A Statistical Framework to Identify Cell Types Whose Genetically Regulated Proportions are Associated with Complex Diseases (2021) (2)
- Information assessment on predicting protein-protein interactions BMC Bioinformatics 2004 (2004) (2)
- Haplotype Inference and Association Analysis in Unrelated Samples (2007) (2)
- A pooled genome-wide association study identifies pancreatic cancer susceptibility loci on chromosome 19p12 and 19p13.3 in the full-Jewish population (2020) (2)
- A Markov random field model-based approach for differentially expressed gene detection from single-cell RNA-seq data (2022) (1)
- Advances in Statistical Bioinformatics: Application of Bayesian Sparse Factor Analysis Models in Bioinformatics (2013) (1)
- M-DATA: A statistical approach to jointly analyzing de novo mutations for multiple traits (2021) (1)
- A novel pathway-based distance score enhances assessment of disease heterogeneity in gene expression (2017) (1)
- Exploring the genetic architecture of alcohol dependence in African-Americans via analysis of a genomewide set of common variants (2013) (1)
- OTTERS: a powerful TWAS framework leveraging summary-level reference data (2022) (1)
- Detecting functional rare variants by collapsing and incorporating functional annotation in Genetic Analysis Workshop 17 mini-exome data (2011) (1)
- Quantitative Proteomics of Caveolin-1-regulated Proteins OF POLYMERASE I AND TRANSCRIPT RELEASE FACTOR/CAVIN-1 IN ENDOTHELIAL (2010) (1)
- Photoreceptor layer thinning is an early biomarker for age-related macular degeneration development: Epidemiological and genetic evidence from UK Biobank optical coherence tomography data (2021) (1)
- Serum proteins marker for early detection of ovarian cancer (2005) (1)
- Is Subcellular Localization Informative for Modeling Protein-Protein Interaction Signal? (2008) (1)
- Incorporating local ancestry improves identification of ancestry-associated methylation signatures and meQTLs in African Americans (2022) (1)
- Identifying sex-specific genetic effects across 733 traits in UK Biobank (2021) (1)
- Genome analysis Detection of DNA copy number alterations using penalized least squares regression (2005) (1)
- Bayesian Inference for Gene Expression and Proteomics: A Misclassification Model for Inferring Transcriptional Regulatory Networks (2006) (1)
- Effect of false positive and false negative rates on inference of binding target conservation across different conditions and species from ChIP-chip data (2009) (1)
- On model selection strategies to identify genes underlying binary traits using genomewide association data via spline smoothing (2012) (1)
- Lawrence Berkeley National Laboratory Recent Work Title Identification of genes critical for resistance to infection by West Nile virus using RNA-Seq analysis Permalink (2013) (1)
- SCADIE: simultaneous estimation of cell type proportions and cell type-specific gene expressions using SCAD-based iterative estimating procedure (2022) (1)
- Prioritized candidate causal haplotype blocks in plant genome-wide association studies (2022) (1)
- Incorporating functional annotation information in prioritizing disease associated SNPs from genome wide association studies (2014) (1)
- Quantifying concordant genetic effects of de novo mutations on multiple disorders (2021) (1)
- Estimating cell-type-specific gene co-expression networks from bulk gene expression data with an application to Alzheimer’s disease (2022) (1)
- A powerful approach to estimating annotation-stratified genetic covariance using GWAS summary statistics (2017) (1)
- Correcting statistical bias in correlation-based kinship estimators (2021) (1)
- Live imaging reveals chromatin compaction transitions and dynamic transcriptional bursting during stem cell differentiation in vivo (2022) (1)
- 20. Child Abuse and Epigenetic Mechanisms of Disease Risk (2018) (1)
- Adjustment of familial relatedness in association test for rare variants (2014) (1)
- Publisher’s Note: Community identification in networks with unbalanced structure [Phys. Rev. E85, 066114 (2012)] (2012) (1)
- Whole-genome association analysis to identify markers associated with recombination rates using single-nucleotide polymorphisms and microsatellites (2005) (1)
- Random Effects Model for Multiple Pathway Analysis with Applications to Type II Diabetes Microarray Data (2014) (1)
- F123. Genome-Wide Epigenetic Signatures of Major Depressive Disorder in Women (2018) (1)
- Aligning peaks across multiple mass spectrometry data sets using a scale-space based approach (2005) (1)
- Author response: T cell-intrinsic role of IL-6 signaling in primary and memory responses (2014) (1)
- Cell-type-specific co-expression inference from single cell RNA-sequencing data (2022) (1)
- Statistical Methods in Genome-Wide Association Studies (2020) (1)
- Statistical issues in binding site identification through CLIP-seq (2015) (1)
- GenoWAP: Post-GWAS Prioritization Through Integrated Analysis of Genomic Functional Annotation (2015) (1)
- MZINBVA: variational approximation for multilevel zero-inflated negative-binomial models for association analysis in microbiome surveys (2021) (1)
- Statistical Methods for Analyzing Tree-Structured Microbiome Data (2021) (1)
- PM296. SORCS2 regulates alcohol withdrawal severity and excitatory synaptic transmission (2016) (1)
- On Estimation of Allele Frequencies via Next-Generation DNA Resequencing with Barcoding (2013) (1)
- Statistical Issues in Using Mass Spectra for Disease Classification (2004) (1)
- Genome-wide Association Study of Alcohol Consumption and Use Disorder in Multiple Populations (N = 274,424) (2019) (1)
- STUDIES ON ALCOHOL DEPENDENCE GENETICS FROM YALE-PENN AND THE MVP (2019) (0)
- Introduction to statistical methods in genome-wide association studies (2016) (0)
- DATA INTEGRATION METHODS IN GENOME WIDE ASSOCIATION STUDIES (2015) (0)
- Leveraging tissue specific gene expression regulation to identify genes associated with complex diseases (2019) (0)
- 207 Developing Genetic Models for Predicting Crohn's Disease Risk (2009) (0)
- A genome-wide association study of frailty identifies significant genetic correlation with neuropsychiatric, cardiovascular, and inflammation pathways. (2023) (0)
- Estimation on risk of spontaneous abortions by genomic disorders from a meta-analysis of microarray results on large case series of pregnancy losses. (2023) (0)
- dbRUSP: An Interactive Database to Investigate Inborn Metabolic Differences for Improved Genetic Disease Screening (2022) (0)
- Whole-exome sequencing reveals damaging gene variants associated with hypoalphalipoproteinemia (2022) (0)
- Quantifying constraint in the human mitochondrial genome (2023) (0)
- Benchmarking automated cell type annotation tools for single-cell ATAC-seq data (2022) (0)
- Incorporating functional annotation information in prioritizing disease associated SNPs from genome wide association studies (2014) (0)
- Identifying intragenic functional modules of genomic variations associated with cancer phenotypes by learning representation of association networks (2022) (0)
- Abstract P3-07-01: Young women with breast cancer and high risk family history but no high penetrance germline mutations have a higher load of rare high functional impact germline variants in cancer relevant genes (2022) (0)
- MYOCARDIAL IMPACT OF CLONAL HEMATOPOIESIS OF INDETERMINATE POTENTIAL (CHIP) SECRETOMES IN CARDIO-ONCOLOGY PATIENTS (2022) (0)
- A pooled genome-wide association study identifies pancreatic cancer susceptibility loci on chromosome 19p12 and 19p13.3 in the full-Jewish population (2020) (0)
- CROSS-TISSUE TRANSCRIPTOME-WIDE ASSOCIATION META-ANALYSIS IDENTIFIES NOVEL RISK GENES FOR LATE-ONSET ALZHEIMER’S DISEASE (2018) (0)
- A Markov random field model for network-based differential expression analysis of single-cell RNA-seq data (2021) (0)
- Dissecting Pathway Disturbances Using Network Topology and Multi-platform Genomics Data (2017) (0)
- LCox: a tool for selecting genes related to survival outcomes using longitudinal gene expression data (2019) (0)
- Multi-trait genome-wide association analyses leveraging alcohol use disorder findings identify novel loci for smoking behaviors in the Million Veteran Program (2022) (0)
- 492. Dectin-1 Stimulation Promotes a Distinct Inflammatory Signature in the Setting of Aging and HIV-infection (2022) (0)
- A novel Bayesian framework for harmonizing information across tissues and studies to increase cell type deconvolution accuracy (2023) (0)
- Dectin-1 Stimulation Promotes a Distinct Inflammatory Signature in the Setting of HIV-infection and Aging (2022) (0)
- 169 Exome Sequencing Implicates Endothelial Ras Signaling Network in Vein of Galen Aneurysmal Malformation (2023) (0)
- A Bayesian semiparametric factor analysis model for subtype identification (2016) (0)
- Early breast cancer risk detection: a novel framework leveraging polygenic risk scores and machine learning (2023) (0)
- Outcomes stratification of head and neck cancer using pre- and post-treatment DNA methylation from peripheral blood. (2022) (0)
- Supplementary Material for: Using a Pharmacokinetic Model to Relate an Individual’s Susceptibility to Alcohol Dependence to Genotypes (2017) (0)
- Author Correction: Inherited causes of clonal haematopoiesis in 97,691 whole genomes (2021) (0)
- Simultaneous and sequential multi-species coronavirus vaccination (2022) (0)
- Identifying intragenic functional modules of genomic variations associated with cancer phenotypes by learning representation of association networks (2022) (0)
- Genetic dysregulation of an endothelial Ras signaling network in vein of Galen malformations (2023) (0)
- ResPAN: a powerful batch correction model for scRNA-seq data through residual adversarial networks (2022) (0)
- Asthma-Neoplasms Relationships: New Insights Using Machine Inference, Epidemiological Reasoning, And Big Data (2018) (0)
- S93. GENOMICS OF SUICIDAL IDEATION AND BEHAVIOR IN VETERANS WITH SCHIZOPHRENIA AND BIPOLAR ILLNESS (2019) (0)
- Post-GWAS Prioritization Through Data Integration Provides Novel Insights on Chronic Obstructive Pulmonary Disease (2016) (0)
- Nicotine dose-dependent epigenomic-wide DNA methylation changes in the mice with long-term electronic cigarette exposure. (2022) (0)
- MIF is a Common Genetic Determinant of COVID-19 Symptomatic Infection and Severity (2022) (0)
- Cell Cycle and Senescence Regulation by Podocyte Histone Deacetylase 1 and 2 (2022) (0)
- A general kernel boosting framework integrating pathways for predictive modeling based on genomic data (2020) (0)
- Handbook of Statistical Bioinformatics-ReadingSample (2016) (0)
- Whole-Exome Sequencing Analyses Support a Role of Vitamin D Metabolism in Ischemic Stroke (2022) (0)
- Correlating genomic copy number alterations with clinicopathologic findings in a case series of hepatocellular carcinoma (2020) (0)
- Comparative performances of machine learning methods for classifying Crohn Disease patients using genome-wide genotyping data (2019) (0)
- M3-S: a genotype calling method incorporating information from samples with known genotypes (2015) (0)
- AC-PCA adjusts for confounding variation in transcriptome data and recovers the anatomical structure of neocortex (2016) (0)
- Genetic Association of Arterial Stiffness Index with Blood Pressure and Coronary Artery Disease (2018) (0)
- Supplementary Material : “ On high-dimensional misspecified mixed model analysis in genome-wide association studies ” (2015) (0)
- Trends and Statistical Challenges in Genomewide Association Studies (2010) (0)
- A 52-gene signature predicts mortality and transplant-free survival in Idiopathic Pulmonary Fibrosis (2017) (0)
- Reply to Kong and Nicolae (2000) (0)
- Abstract 6762: Tumor immune microenvironment &genomic features of non-small cell lung carcinomas in patients with HIV (PWH) (2023) (0)
- The 24-bp CHIT1 Exon 10 Polymorphism Is Associated With Airway Hyperresponsiveness In A Population Of Autobody Shop Workers (2010) (0)
- Genomic Wide Expression Study (GWES) of Induced Sputum in Asthma. (2009) (0)
- Abstract 24: Two Locus Inheritance of Non-Syndromic Midline Craniosynostosis Via Rare SMAD6 and Common BMP2 Alleles (2017) (0)
- AC-PCA: simultaneous dimension reduction and adjustment for confounding variation (2016) (0)
- Genetic Analysis and Investigating Pleiotropic Architecture with ‘GGPA’ Package (2020) (0)
- Contribution of rare transmitted and de novo variants among 2 , 871 1 congenital heart disease probands (2017) (0)
- Speaker 1: Bruce Cuthbert, USA (2016) (0)
- Aggregating algorithms in high dimensional data classification (2006) (0)
- Hematopoietic mosaic chromosomal alterations and risk for infection among 767,891 individuals without blood cancer (2020) (0)
- Identifying Stage-Specific Genes by Combining Information from Two Different Types of Oligonucleotide Arrays (2007) (0)
- RESULTS FROM THE USVA MVP PTSD COOPERATIVE STUDY GWAS: PCL TRAITS (2019) (0)
- GraphPAC-package Using Graph Theory to Identify Mutational Clusters of Amino Acids. (2012) (0)
- GENOMICS OF SUICIDAL IDEATION AND BEHAVIOR IN VETERANS WITH SEVERE MENTAL ILLNESS (2019) (0)
- C VirusChronically Infected with Hepatitis Immune Responses from Macrophages of Impaired Toll-Like Receptor 3-Mediated (2014) (0)
- Population-based Large-scale longitudinal analysis of relationship between asthma and neoplasia (2018) (0)
- Modeling Species Specific Gene Expression Across Multiple Regions in the Brain (2020) (0)
- Title Stratified Pathway Analysis to Identify Gene Sets Associatedwith Oral Contraceptive Use and Breast Cancer (2014) (0)
- Speaker 4: Joel Gelernter, USA (2016) (0)
- M31 GENOME-WIDE ASSOCIATION STUDY OF COMORBID ALCOHOL DEPENDENCE AND MAJOR DEPRESSION (2019) (0)
- Drug-Pathway Association Analysis: Integration of High-Dimensional Transcriptional and Drug Sensitivity Profile (2015) (0)
- Preface (2013) (0)
- Transcriptome Analysis of ALDH3A1-null Mice Elucidates New Roles of Corneal Crystallins (2017) (0)
- Timing of newborn blood collection alters screening performance for metabolic disorders (2021) (0)
- The BClustLonG Package: A Dirichlet Process Mixture Model for Clustering Longitudinal Gene Expression Data (2017) (0)
- An enhanced machine learning tool for cis‐eQTL mapping with regularization and confounder adjustments (2020) (0)
- 975 Novel Associations of Uncommon Crohn's Disease Risk Alleles With Higher Frequencies in the Ashkenazi Jewish Population (2013) (0)
- Three distinct velocities of elongating RNA polymerase define exons and introns (2016) (0)
- Time Course RNA-seq: A Potential Avenue with Somewhat Different Approach in Tandem of Differential Analysis (2012) (0)
- An Empirical Bayes risk prediction model using multiple traits for sequencing data (2015) (0)
- CORRELATION ANALYSIS IDENTIFIES SHARED AND DISTINCT GENETIC ARCHITECTURE OF LATE-ONSET ALZHEIMER’S DISEASE AND AMYOTROPHIC LATERAL SCLEROSIS (2017) (0)
- Abstract 1326: A pooled genome-wide association study of pancreatic cancer susceptibility loci in American Jews (2017) (0)
- Statistical Methods for the Analysis of Next Generation Sequencing Data from Paired Tumor-Normal Samples (2014) (0)
- ANNOTATION-STRATIFIED GENETIC CORRELATION ANALYSIS IDENTIFIES SHARED AND DISTINCT GENETIC ARCHITECTURE OF LATE-ONSET ALZHEIMER’S DISEASE AND AMYOTROPHIC LATERAL SCLEROSIS (2017) (0)
- SU137DIFFERENCES DETWEEN AUDIT-C AND AUD PHENOTYPES REVEALED BY GENOME-WIDE ANALYSIS (2019) (0)
- A graph theoretic approach to utilizing protein structure to identify non-random somatic (2014) (0)
- On calculating the probability of a set of orthologous sequences (2009) (0)
- Mass cytometry identifies the source of cellular and functional changes of gene expression profiles associated with Idiopathic Pulmonary Fibrosis mortality (2019) (0)
- Distance-correlation based gene set analysis in longitudinal studies (2016) (0)
- LEVERAGING TISSUE SPECIFIC GENE EXPRESSION REGULATION TO IDENTIFY GENES ASSOCIATED WITH ALZHEIMER'S DISEASE (2019) (0)
- T45 Genetic Factor Common To Schizophrenia And Hiv Infection Is Associated With Risky Sexual Behavior (2017) (0)
- Abstract 178: RCBTB1 Genotypes Modulate Smoking Effect on Carotid Intima-Media Thickness: A Finding from a Genome-Wide Interaction Analysis (2012) (0)
- Metabolic Regulation of G ene Expression by Histone Lysine b-Hydroxybutyrylation Graphical Abstract Highlights (2016) (0)
- Application of a Novel Machine Learning Method to Big Data Infers a Relationship Between Asthma and the Development of Neoplasia (2018) (0)
- Bayesian Methods in Genomics and Proteomics Studies (2010) (0)
- Initial Results From An Opioid Dependence Whole Exome Sequencing Study (2019) (0)
- Special issue on genome wide association study (2021) (0)
- Arabidopsis seedlings follow two distinct development pathways: skotomorphogenesis in the dark and photomorphogenesis in the light. Dark-grown seedlings (2003) (0)
- TLR9-deficiency in B cells Promotes Immune Tolerance via IL-10 in a Type 1 Diabetes Mouse Model (2020) (0)
- An empirical Bayes approach to normalization and differential abundance testing for microbiome data (2020) (0)
- Influence of Hypertension on Pneumonia Risk: Epidemiological Association and Mendelian Randomization in the UK Biobank (2020) (0)
- Community assessment to advance computational prediction of cancer drug combinations in a pharmacogenomic screen (2019) (0)
- A statistical framework for cross-tissue transcriptome-wide 1 association analysis 2 3 4 (2019) (0)
- 13 w 5083 : Statistical Data Integration Challenges in Computational Biology : Regulatory Networks and Personalized Medicine Aug 11-Aug 16 , 2013 (2013) (0)
- Title: Genes Influencing Cannabis Dependence Risk from GWAS (2016) (0)
- Change point analysis of histone modifications reveals epigenetic blocks with distinct regulatory activity and biological functions (2013) (0)
- Retrospective Association Analysis of Longitudinal Binary Traits Identifies Important Loci and Pathways in Cocaine Use (2019) (0)
- Genomic and Phenomic Correlates of Suicidality Among US Veterans With Schizophrenia or Bipolar Disorder (2021) (0)
- Speaker 3: Sachio Matsushita, Japan (2016) (0)
- Calculating Orthologous Protein-Coding Sequence Set Probability Using the Poisson Process. (2021) (0)
- Association of Genetic Risk and Lifestyle Factors with Incident Depression: A Prospective Analysis of the UK Biobank Cohort (2020) (0)
- Graphical Modeling of Biological Pathways in Genome-wide Association Studies (2014) (0)
- NONPARAMETRIC ESTIMATOR OF FALSE DISCOVERY RATE BASED ON BERNˇ IN POLYNOMIALS STE ̆ (2020) (0)
- Inference of Dynamic Graph Changes for Functional Connectome (2019) (0)
- Causal Haplotype Block Identification in Plant Genome-Wide Association Studies (2021) (0)
- Statistical Analysis of Biomarkers from -Omics Technologies (2014) (0)
- ProtAnno, an Automated Cell Type Annotation Tool for Single Cell Proteomics Data that integrates information from Multiple Reference Sources (2021) (0)
- INTEGRATIVE ANALYSIS OF GWAS SUMMARY DATA AND FUNCTIONAL ANNOTATIONS HIGHLIGHTS SIGNAL ENRICHMENT IN IMMUNE-RELATED DNA ELEMENTS FOR LATE-ONSET ALZHEIMER’S DISEASE (2016) (0)
- Abstract 12630: Genetic Association of Arterial Stiffness Index With Incident Coronary Artery Disease and Congestive Heart Failure (2018) (0)
- Evaluation of height as a disease risk factor through a phenome-wide association study of genetically-predicted height (2021) (0)
- Variance Estimation and Confidence Intervals from High-dimensional Genome-wide Association Studies Through Misspecified Mixed Model Analysis (2021) (0)
- Improving Genetic Association Analysis through Integration of Functional Annotations of the Human Genome (2019) (0)
- Integrate direct protein interaction information from diverse organisms (2008) (0)
- Genetic Risk, Incident Depression, and the Benefits of Adhering to a Healthy Lifestyle: A Prospective Analysis of the UK Biobank Cohort (2020) (0)
- 67. ADVANCED GENETIC STUDY OF PROBLEMATIC ALCOHOL USE IN MULTIPLE POPULATIONS IN > 1 MILLION SUBJECTS (2021) (0)
- A permutation test approach to the choice of size k for the nearest neighbors classifier (2011) (0)
- A novel pathway-based distance score enhances assessment of disease heterogeneity in gene expression (2017) (0)
- M25 GENETICS OF COGNITIVE FUNCTION IN SCHIZOPHRENIA AND BIPOLAR DISORDER (2019) (0)
- The Statistics of Gene Mapping by SIEGMUND, D. and YAKIR, B (2009) (0)
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What Schools Are Affiliated With Hongyu Zhao?
Hongyu Zhao is affiliated with the following schools:
