Igor V. Grigoriev

Igor V. Grigoriev's AcademicInfluence.com Rankings

Igor V. Grigoriev

Biology

#12178

World Rank

#15636

Historical Rank

Microbiology

#722

World Rank

#796

Historical Rank

biology Degrees

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Biology

Igor V. Grigoriev's Degrees

PhD Microbiology University of California, Berkeley
Masters Microbiology University of California, Berkeley
Bachelors Microbiology University of California, Berkeley

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Igor V. Grigoriev's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray) (2006) (4003)
The Sorghum bicolor genome and the diversification of grasses (2009) (2720)
The Chlamydomonas Genome Reveals the Evolution of Key Animal and Plant Functions (2007) (2504)
The Physcomitrella Genome Reveals Evolutionary Insights into the Conquest of Land by Plants (2008) (1736)
The amphioxus genome and the evolution of the chordate karyotype (2008) (1517)
Sea Anemone Genome Reveals Ancestral Eumetazoan Gene Repertoire and Genomic Organization (2007) (1464)
The Phaeodactylum genome reveals the evolutionary history of diatom genomes (2008) (1451)
The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes (2012) (1355)
Comparative genomics of the lactic acid bacteria (2006) (1274)
The Ecoresponsive Genome of Daphnia pulex (2011) (1152)
The genome of the choanoflagellate Monosiga brevicollis and the origin of metazoans (2008) (1032)
Phytophthora Genome Sequences Uncover Evolutionary Origins and Mechanisms of Pathogenesis (2006) (1007)
MycoCosm portal: gearing up for 1000 fungal genomes (2013) (969)
The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis (2008) (966)
The Trichoplax genome and the nature of placozoans (2008) (834)
A phylum-level phylogenetic classification of zygomycete fungi based on genome-scale data (2016) (821)
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change (2011) (807)
Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists (2015) (763)
The Genome of the Western Clawed Frog Xenopus tropicalis (2010) (749)
The Selaginella Genome Identifies Genetic Changes Associated with the Evolution of Vascular Plants (2011) (731)
Trichoderma: the genomics of opportunistic success (2011) (712)
The genome portal of the Department of Energy Joint Genome Institute: 2014 updates (2013) (634)
Green Evolution and Dynamic Adaptations Revealed by Genomes of the Marine Picoeukaryotes Micromonas (2009) (618)
The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation (2007) (605)
Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis (2013) (598)
Corrigendum: Genome sequencing and analysis of the biomass-degrading fungus Trichoderma reesei (syn. Hypocrea jecorina) (2008) (594)
Comparative genome sequence analysis underscores mycoparasitism as the ancestral life style of Trichoderma (2011) (584)
Genome, transcriptome, and secretome analysis of wood decay fungus Postia placenta supports unique mechanisms of lignocellulose conversion (2009) (579)
Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi (2014) (566)
Obligate biotrophy features unraveled by the genomic analysis of rust fungi (2011) (546)
Genomic Analysis of Organismal Complexity in the Multicellular Green Alga Volvox carteri (2010) (533)
Insights into bilaterian evolution from three spiralian genomes (2012) (528)
Finished Genome of the Fungal Wheat Pathogen Mycosphaerella graminicola Reveals Dispensome Structure, Chromosome Plasticity, and Stealth Pathogenesis (2011) (515)
The Plant Cell Wall–Decomposing Machinery Underlies the Functional Diversity of Forest Fungi (2011) (513)
Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi (2012) (507)
Earth BioGenome Project: Sequencing life for the future of life (2018) (492)
Genome sequence of the lignocellulose-bioconverting and xylose-fermenting yeast Pichia stipitis (2007) (492)
Genome sequence of the model mushroom Schizophyllum commune (2010) (458)
The Chlorella variabilis NC64A Genome Reveals Adaptation to Photosymbiosis, Coevolution with Viruses, and Cryptic Sex[C][W] (2010) (446)
The Genome Portal of the Department of Energy Joint Genome Institute (2011) (429)
The Genome of Naegleria gruberi Illuminates Early Eukaryotic Versatility (2010) (422)
Pan genome of the phytoplankton Emiliania underpins its global distribution (2013) (418)
The Genome of Nectria haematococca: Contribution of Supernumerary Chromosomes to Gene Expansion (2009) (407)
Comparative genomic analysis of the thermophilic biomass-degrading fungi Myceliophthora thermophila and Thielavia terrestris (2011) (391)
Obligate Biotrophy Features Unraveled by the Genomic Analysis of the Rust Fungi, Melampsora larici-populina and Puccinia graminis f. sp. tritici (2011) (388)
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs (2012) (349)
Use of simulated data sets to evaluate the fidelity of metagenomic processing methods (2007) (347)
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus (2017) (338)
Comparative genomics of citric-acid-producing Aspergillus niger ATCC 1015 versus enzyme-producing CBS 513.88. (2011) (336)
Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (2012) (333)
Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis (2012) (280)
Widespread Polycistronic Transcripts in Fungi Revealed by Single-Molecule mRNA Sequencing (2015) (280)
The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation (2012) (278)
High-resolution metagenomics targets specific functional types in complex microbial communities (2008) (271)
Niche of harmful alga Aureococcus anophagefferens revealed through ecogenomics (2011) (265)
Evolutionary genomics of the cold-adapted diatom Fragilariopsis cylindrus (2017) (264)
Comparative genomics of biotechnologically important yeasts (2016) (257)
Phylogenetic and phylogenomic overview of the Polyporales (2013) (254)
Comparative Transcriptome and Secretome Analysis of Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium (2010) (251)
The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry (2012) (247)
Widespread adenine N6-methylation of active genes in fungi (2017) (239)
Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species (2014) (236)
Insight into trade-off between wood decay and parasitism from the genome of a fungal forest pathogen. (2012) (217)
Fueling the future with fungal genomics (2011) (215)
Early-branching gut fungi possess a large, comprehensive array of biomass-degrading enzymes (2016) (214)
Comparative Genome Structure, Secondary Metabolite, and Effector Coding Capacity across Cochliobolus Pathogens (2013) (200)
Genome sequencing and mapping reveal loss of heterozygosity as a mechanism for rapid adaptation in the vegetable pathogen Phytophthora capsici. (2012) (200)
The ectomycorrhizal fungus Paxillus involutus converts organic matter in plant litter using a trimmed brown-rot mechanism involving Fenton chemistry (2012) (176)
Structural characterization of the reaction pathway in phosphoserine phosphatase: crystallographic "snapshots" of intermediate states. (2002) (173)
Comparative Genomics of Early-Diverging Mushroom-Forming Fungi Provides Insights into the Origins of Lignocellulose Decay Capabilities. (2016) (173)
The Fungal Tree of Life: from Molecular Systematics to Genome-Scale Phylogenies. (2017) (163)
Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution of symbiotic traits (2020) (162)
Comparative genomics of xylose-fermenting fungi for enhanced biofuel production (2011) (161)
The sequence and analysis of duplication-rich human chromosome 16 (2004) (160)
Phylogenomic Analyses Indicate that Early Fungi Evolved Digesting Cell Walls of Algal Ancestors of Land Plants (2015) (155)
Comparative Genomics of a Plant-Pathogenic Fungus, Pyrenophora tritici-repentis, Reveals Transduplication and the Impact of Repeat Elements on Pathogenicity and Population Divergence (2013) (153)
Computational analysis of the Phanerochaete chrysosporium v2.0 genome database and mass spectrometry identification of peptides in ligninolytic cultures reveal complex mixtures of secreted proteins. (2006) (152)
Megaphylogeny resolves global patterns of mushroom evolution (2019) (150)
A parts list for fungal cellulosomes revealed by comparative genomics (2017) (146)
Comparative genomics of the social amoebae Dictyostelium discoideum and Dictyostelium purpureum (2011) (144)
Kinetics of escape through a small hole (2002) (143)
Transcriptomic response of the mycoparasitic fungus Trichoderma atroviride to the presence of a fungal prey (2009) (142)
High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis. (2018) (142)
Transposable Elements versus the Fungal Genome: Impact on Whole-Genome Architecture and Transcriptional Profiles (2016) (141)
Expansion of Signal Transduction Pathways in Fungi by Extensive Genome Duplication (2016) (141)
Evolution of novel wood decay mechanisms in Agaricales revealed by the genome sequences of Fistulina hepatica and Cylindrobasidium torrendii. (2015) (138)
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri (2018) (128)
Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum (2016) (127)
Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize (2012) (126)
Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts (2014) (123)
Comparative genomics and transcriptomics depict ericoid mycorrhizal fungi as versatile saprotrophs and plant mutualists. (2018) (122)
Evolution and comparative genomics of the most common Trichoderma species (2019) (121)
Significant Alteration of Gene Expression in Wood Decay Fungi Postia placenta and Phanerochaete chrysosporium by Plant Species (2011) (118)
Sequencing the fungal tree of life. (2011) (117)
Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens (2017) (116)
The DNA sequence and comparative analysis of human chromosome 5 (2004) (116)
Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria (2017) (116)
Analysis of clock-regulated genes in Neurospora reveals widespread posttranscriptional control of metabolic potential (2014) (115)
Genome-reconstruction for eukaryotes from complex natural microbial communities (2017) (115)
Linking secondary metabolites to gene clusters through genome sequencing of six diverse Aspergillus species (2018) (106)
The genome of wine yeast Dekkera bruxellensis provides a tool to explore its food-related properties. (2012) (105)
Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi (2018) (104)
Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts (2018) (101)
Single-cell RNA sequencing reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress (2017) (99)
Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood (2014) (95)
101 Dothideomycetes genomes: A test case for predicting lifestyles and emergence of pathogens (2020) (95)
Genetic isolation between two recently diverged populations of a symbiotic fungus (2015) (94)
Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas. (2017) (94)
Trichoderma: the genomics of opportunistic success (2011) (94)
Endogenous short RNAs generated by Dicer 2 and RNA-dependent RNA polymerase 1 regulate mRNAs in the basal fungus Mucor circinelloides (2010) (93)
Lawrence Berkeley National Laboratory Lawrence Berkeley National Laboratory Title Genomic analysis of organismal complexity in the multicellular green alga (2010) (92)
Comparative genomics of Rhizophagus irregularis, R. cerebriforme, R. diaphanus and Gigaspora rosea highlights specific genetic features in Glomeromycotina. (2019) (91)
Genomics of wood-degrading fungi. (2014) (91)
Transcriptomic atlas of mushroom development reveals conserved genes behind complex multicellularity in fungi (2019) (85)
The genome of the xerotolerant mold Wallemia sebi reveals adaptations to osmotic stress and suggests cryptic sexual reproduction. (2012) (85)
A comparative genomics study of 23 Aspergillus species from section Flavi (2020) (84)
Transcription Factor Amr1 Induces Melanin Biosynthesis and Suppresses Virulence in Alternaria brassicicola (2012) (83)
Leveraging single-cell genomics to expand the fungal tree of life (2018) (82)
Rediscovery by Whole Genome Sequencing: Classical Mutations and Genome Polymorphisms in Neurospora crassa (2011) (75)
Massive Changes in Genome Architecture Accompany the Transition to Self-Fertility in the Filamentous Fungus Neurospora tetrasperma (2011) (75)
Strand-Specific RNA-Seq Analyses of Fruiting Body Development in Coprinopsis cinerea (2015) (73)
Functional genomics of lipid metabolism in the oleaginous yeast Rhodosporidium toruloides (2017) (72)
Diversity of cytosine methylation across the fungal tree of life (2019) (71)
Genome sequence of the plant growth promoting endophytic yeast Rhodotorula graminis WP1 (2015) (70)
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle (2018) (69)
The complete sequence of human chromosome 5 (2004) (68)
Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants (2016) (67)
Enhanced degradation of softwood versus hardwood by the white-rot fungus Pycnoporus coccineus (2015) (67)
Early Diverging Fungus Mucor circinelloides Lacks Centromeric Histone CENP-A and Displays a Mosaic of Point and Regional Centromeres (2019) (66)
Genomic and functional analyses of fungal and bacterial consortia that enable lignocellulose breakdown in goat gut microbiomes (2021) (65)
The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata (2019) (64)
Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control (2016) (63)
Comparative and transcriptional analysis of the predicted secretome in the lignocellulose-degrading basidiomycete fungus Pleurotus ostreatus. (2016) (62)
The genome of Xylona heveae provides a window into fungal endophytism. (2016) (61)
Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution (2017) (61)
The Earth BioGenome Project 2020: Starting the clock (2022) (58)
Population genomics of picophytoplankton unveils novel chromosome hypervariability (2017) (58)
Horizontal gene transfer and gene dosage drives adaptation to wood colonization in a tree pathogen (2015) (57)
Genomics and Transcriptomics Analyses of the Oil-Accumulating Basidiomycete Yeast Trichosporon oleaginosus: Insights into Substrate Utilization and Alternative Evolutionary Trajectories of Fungal Mating Systems (2015) (57)
Transposable Element Dynamics among Asymbiotic and Ectomycorrhizal Amanita Fungi (2014) (56)
Genomic adaptations of the halophilic Dead Sea filamentous fungus Eurotium rubrum (2014) (56)
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts (2018) (55)
The Mutualist Laccaria bicolor Expresses a Core Gene Regulon During the Colonization of Diverse Host Plants and a Variable Regulon to Counteract Host-Specific Defenses. (2015) (54)
PhycoCosm, a comparative algal genomics resource (2020) (51)
Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi (2017) (51)
The GC-Rich Mitochondrial and Plastid Genomes of the Green Alga Coccomyxa Give Insight into the Evolution of Organelle DNA Nucleotide Landscape (2011) (51)
Lipid metabolic changes in an early divergent fungus govern the establishment of a mutualistic symbiosis with endobacteria (2016) (50)
Genomic Analysis Enlightens Agaricales Lifestyle Evolution and Increasing Peroxidase Diversity (2020) (49)
FunGAP: Fungal Genome Annotation Pipeline using evidence‐based gene model evaluation (2017) (49)
Fungi Contribute Critical but Spatially Varying Roles in Nitrogen and Carbon Cycling in Acid Mine Drainage (2016) (49)
Genome sequencing provides insight into the reproductive biology, nutritional mode and ploidy of the fern pathogen Mixia osmundae. (2014) (49)
Phylogenomics of Endogonaceae and evolution of mycorrhizas within Mucoromycota. (2019) (48)
Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylindrosporum and its involvement in ectomycorrhizal symbiosis. (2015) (46)
Exploiting proteomic data for genome annotation and gene model validation in Aspergillus niger (2009) (45)
Fungal-specific transcription factor AbPf2 activates pathogenicity in Alternaria brassicicola. (2013) (44)
The gold-standard genome of Aspergillus niger NRRL 3 enables a detailed view of the diversity of sugar catabolism in fungi (2018) (44)
Genome-Wide Analysis of Corynespora cassiicola Leaf Fall Disease Putative Effectors (2018) (43)
Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels (2017) (43)
At the nexus of three kingdoms: the genome of the mycorrhizal fungus Gigaspora margarita provides insights into plant, endobacterial and fungal interactions. (2019) (42)
Duplications and losses in gene families of rust pathogens highlight putative effectors (2014) (42)
Insights into bilaterian evolution from three spiralian (2013) (41)
Comparative Analysis of Secretome Profiles of Manganese(II)-Oxidizing Ascomycete Fungi (2016) (41)
Phylogenetic, genomic organization and expression analysis of hydrophobin genes in the ectomycorrhizal basidiomycete Laccaria bicolor. (2012) (41)
Comparative genomics reveals unique wood-decay strategies and fruiting body development in the Schizophyllaceae. (2019) (41)
Multi-omic analyses of exogenous nutrient bag decomposition by the black morel Morchella importuna reveal sustained carbon acquisition and transferring. (2019) (40)
The regulatory and transcriptional landscape associated with carbon utilization in a filamentous fungus (2020) (39)
Phyllosticta citricarpa and sister species of global importance to Citrus (2019) (38)
Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype (2015) (36)
A fungal transcription factor essential for starch degradation affects integration of carbon and nitrogen metabolism (2017) (36)
Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina (2018) (35)
Detection of protein fold similarity based on correlation of amino acid properties. (1999) (35)
Degradation of Bunker C Fuel Oil by White-Rot Fungi in Sawdust Cultures Suggests Potential Applications in Bioremediation (2015) (35)
Fungal Endophytes of Populus trichocarpa Alter Host Phenotype, Gene Expression, and Rhizobiome Composition. (2019) (35)
Fungal Genomic Annotation (2006) (34)
Proteome specialization of anaerobic fungi during ruminal degradation of recalcitrant plant fiber (2020) (33)
Resolving the Mortierellaceae phylogeny through synthesis of multi-gene phylogenetics and phylogenomics (2020) (33)
The Trichoplax genome and the nature of (2008) (33)
The central role of selenium in the biochemistry and ecology of the harmful pelagophyte, Aureococcus anophagefferens (2013) (32)
A zinc-finger-family transcription factor, AbVf19, is required for the induction of a gene subset important for virulence in Alternaria brassicicola. (2012) (31)
Expanding genomics of mycorrhizal symbiosis (2014) (30)
Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola (2018) (30)
Conserved genomic collinearity as a source of broadly applicable, fast evolving, markers to resolve species complexes: A case study using the lichen-forming genus Peltigera section Polydactylon. (2017) (29)
Integrative visual omics of the white-rot fungus Polyporus brumalis exposes the biotechnological potential of its oxidative enzymes for delignifying raw plant biomass (2018) (29)
The draft genome sequence of the ascomycete fungus Penicillium subrubescens reveals a highly enriched content of plant biomass related CAZymes compared to related fungi. (2017) (29)
Genetic dissection of interspecific differences in yeast thermotolerance (2018) (29)
Visual Comparative Omics of Fungi for Plant Biomass Deconstruction (2016) (29)
Genetic determinants of endophytism in the Arabidopsis root mycobiome (2021) (29)
Genomic and Genetic Insights Into a Cosmopolitan Fungus, Paecilomyces variotii (Eurotiales) (2018) (27)
Gene family expansions and transcriptome signatures uncover fungal adaptations to wood decay (2021) (27)
Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses (2020) (26)
Genomics and Development of Lentinus tigrinus: A White-Rot Wood-Decaying Mushroom with Dimorphic Fruiting Bodies (2018) (26)
Full Genome of Phialocephala scopiformis DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin (2016) (26)
Expansion of the global RNA virome reveals diverse clades of bacteriophages (2022) (25)
Comprehensive genomic and transcriptomic analysis of polycyclic aromatic hydrocarbon degradation by a mycoremediation fungus, Dentipellis sp. KUC8613 (2019) (25)
Experimentally Validated Reconstruction and Analysis of a Genome-Scale Metabolic Model of an Anaerobic Neocallimastigomycota Fungus (2021) (25)
Regulation of Yeast-to-Hyphae Transition in Yarrowia lipolytica (2018) (24)
Anaerobic gut fungi are an untapped reservoir of natural products (2021) (24)
Genome sequence of the chestnut blight fungus Cryphonectria parasitica EP155: A fundamental resource for an archetypical invasive plant pathogen. (2020) (24)
Dichomitus squalens partially tailors its molecular responses to the composition of solid wood (2018) (24)
Draft Genome Sequence of Microdochium bolleyi, a Dark Septate Fungal Endophyte of Beach Grass (2016) (23)
The transcription factor PDR-1 is a multi-functional regulator and key component of pectin deconstruction and catabolism in Neurospora crassa (2017) (22)
Multi-omic Analyses of Extensively Decayed Pinus contorta Reveal Expression of a Diverse Array of Lignocellulose-Degrading Enzymes (2018) (22)
Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships (2018) (22)
The ectomycorrhizal fungus Pisolithus microcarpus encodes a microRNA involved in cross-kingdom gene silencing during symbiosis (2022) (22)
Genome-scale phylogenetics reveals a monophyletic Zoopagales (Zoopagomycota, Fungi). (2019) (22)
Conserved white-rot enzymatic mechanism for wood decay in the Basidiomycota genus Pycnoporus (2020) (22)
Secretome Analysis from the Ectomycorrhizal Ascomycete Cenococcum geophilum (2018) (22)
The Architecture of Metabolism Maximizes Biosynthetic Diversity in the Largest Class of Fungi (2020) (21)
Genome-wide role of codon usage on transcription and identification of potential regulators (2021) (21)
Phylogenomic Analyses of Non-Dikarya Fungi Supports Horizontal Gene Transfer Driving Diversification of Secondary Metabolism in the Amphibian Gastrointestinal Symbiont, Basidiobolus (2020) (21)
Improved High-Quality Draft Genome Sequence of the Eurypsychrophile Rhodotorula sp. JG1b, Isolated from Permafrost in the Hyperarid Upper-Elevation McMurdo Dry Valleys, Antarctica (2016) (21)
The genome of the choanoflagellate Monosiga brevicollis and the origins of metazoan multicellularity (2008) (19)
The biogeographic differentiation of algal microbiomes in the upper ocean from pole to pole (2021) (19)
Genomic and proteomic biases inform metabolic engineering strategies for anaerobic fungi (2019) (18)
Tracking of enzymatic biomass deconstruction by fungal secretomes highlights markers of lignocellulose recalcitrance (2019) (18)
The fungus that came in from the cold: dry rot’s pre-adapted ability to invade buildings (2017) (18)
Fungal ecological strategies reflected in gene transcription - a case study of two litter decomposers. (2019) (18)
Genome-scale phylogenetic analyses confirm Olpidium as the closest living zoosporic fungus to the non-flagellated, terrestrial fungi (2020) (18)
Insights into an unusual Auxiliary Activity 9 family member lacking the histidine brace motif of lytic polysaccharide monooxygenases (2019) (18)
Cinnamic Acid and Sorbic acid Conversion Are Mediated by the Same Transcriptional Regulator in Aspergillus niger (2019) (17)
The White-Rot Basidiomycete Dichomitus squalens Shows Highly Specific Transcriptional Response to Lignocellulose-Related Aromatic Compounds (2019) (17)
The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation (2017) (17)
Comparative genomics reveals dynamic genome evolution in host specialist ectomycorrhizal fungi. (2020) (17)
Genomic and exoproteomic diversity in plant biomass degradation approaches among Aspergilli (2018) (17)
Chapter One – Fungal Genomics: Sequencing and Annotation (2014) (17)
Glucose-Mediated Repression of Plant Biomass Utilization in the White-Rot Fungus Dichomitus squalens (2019) (16)
An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in host roots. (2019) (16)
Horizontal transfer of carbohydrate metabolism genes into ectomycorrhizal Amanita. (2015) (16)
Erratum: Genome of an arbuscular mycorrhizal fungus provides insight into the oldest plant symbiosis (Proceedings of the National Academy of Sciences of the United States of America (2013) 110:50 (20117-20122) DOI: 10.1073/pnas.1313452110) (2014) (16)
Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes (2017) (16)
Mitovirus and Mitochondrial Coding Sequences from Basal Fungus Entomophthora muscae (2019) (16)
Draft Genome Sequence of Tuber borchii Vittad., a Whitish Edible Truffle (2018) (16)
Draft genome sequence of a monokaryotic model brown-rot fungus Postia (Rhodonia) placenta SB12 (2017) (15)
Genome sequence of the plant growth promoting fungus serendipita vermifera subsp. BESCII: The first native strain from North America (2018) (15)
The obligate alkalophilic soda‐lake fungus Sodiomyces alkalinus has shifted to a protein diet (2018) (15)
Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions (2020) (15)
Modulation of Endolysin LysECD7 Bactericidal Activity by Different Peptide Tag Fusion (2020) (15)
Genome sequence of a white rot fungus Schizopora paradoxa KUC8140 for wood decay and mycoremediation. (2015) (15)
Niche differentiation of bacteria and fungi in carbon and nitrogen cycling of different habitats in a temperate coniferous forest: A metaproteomic approach (2021) (14)
Genetics of mating in members of the Chaetomiaceae as revealed by experimental and genomic characterization of reproduction in Myceliophthora heterothallica. (2016) (14)
Comparative Genomics of the Ectomycorrhizal Sister Species Rhizopogon vinicolor and Rhizopogon vesiculosus (Basidiomycota: Boletales) Reveals a Divergence of the Mating Type B Locus (2017) (14)
Desert truffle genomes reveal their reproductive modes and new insights into plant–fungal interaction and ectendomycorrhizal lifestyle (2020) (14)
Broad-specificity GH131 β-glucanases are a hallmark of fungi and oomycetes that colonize plants. (2019) (14)
Expression of Aspergillus niger CAZymes is determined by compositional changes in wheat straw generated by hydrothermal or ionic liquid pretreatments (2017) (14)
Draft Genome Sequence of Neurospora crassa Strain FGSC 73 (2015) (13)
The Phaeodactylum genome reveals the dynamic nature and multi-lineage evolutionary history of diatom genomes (2011) (13)
A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology (2021) (13)
Early Diverging Insect-Pathogenic Fungi of the Order Entomophthorales Possess Diverse and Unique Subtilisin-Like Serine Proteases (2018) (13)
Draft Genome Sequence of the White-Rot Fungus Obba rivulosa 3A-2 (2016) (12)
Discovering the Potentials of Four Phage Endolysins to Combat Gram-Negative Infections (2021) (12)
Erratum: Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis (Proceedings of the National Academy of Sciences (2012) 109 (5458-5463) DOI: 10.1073/pnas. 1119912109) (2012) (12)
The Influence of Contrasting Microbial Lifestyles on the Pre-symbiotic Metabolite Responses of Eucalyptus grandis Roots (2019) (12)
The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete. (2016) (12)
High-resolution metagenomics targets major functional types in complex microbial communities (2009) (12)
Shed Light in the DaRk LineagES of the Fungal Tree of Life—STRES (2020) (12)
Wildfire-dependent changes in soil microbiome diversity and function (2022) (12)
Draft Genome Sequences of Three Monokaryotic Isolates of the White-Rot Basidiomycete Fungus Dichomitus squalens (2019) (11)
Inorganic nitrogen availability alters Eucalyptus grandis receptivity to the ectomycorrhizal fungus Pisolithus albus but not symbiotic nitrogen transfer. (2019) (11)
Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales (2017) (11)
Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants (2019) (11)
Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi (2019) (11)
Talaromyces borbonicus, sp. nov., a novel fungus from biodegraded Arundo donax with potential abilities in lignocellulose conversion (2018) (11)
Comparative genomics of pyrophilous fungi reveals a link between fire events and developmental genes. (2020) (11)
Transcriptional Responses of the Bdtf1-Deletion Mutant to the Phytoalexin Brassinin in the Necrotrophic Fungus Alternaria brassicicola (2014) (11)
Genomic characterization of three marine fungi, including Emericellopsis atlantica sp. nov. with signatures of a generalist lifestyle and marine biomass degradation (2021) (11)
Fungal Genome Annotation. (2018) (11)
Draft Genome Sequence of Coniochaeta ligniaria NRRL 30616, a Lignocellulolytic Fungus for Bioabatement of Inhibitors in Plant Biomass Hydrolysates (2017) (11)
Interhelical contacts determining the architecture of alpha-helical globular proteins. (1994) (11)
Unique genomic traits for cold adaptation in Naganishia vishniacii, a polyextremophile yeast isolated from Antarctica. (2020) (11)
DNA affinity purification sequencing and transcriptional profiling reveal new aspects of nitrogen regulation in a filamentous fungus (2021) (11)
Defining the eco-enzymological role of the fungal strain Coniochaeta sp. 2T2.1 in a tripartite lignocellulolytic microbial consortium. (2019) (11)
Symbiotic nitrogen fixation in the reproductive structures of a basidiomycete fungus (2021) (10)
Genomic adaptations of the green alga Dunaliella salina to life under high salinity (2020) (10)
Cationic gemini surfactants as new agents for plasmid DNA delivery into cells (2012) (10)
Transcriptomic atlas of mushroom development highlights an independent origin of complex multicellularity (2018) (10)
Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans (2022) (9)
Enzymatic Adaptation of Podospora anserina to Different Plant Biomass Provides Leads to Optimized Commercial Enzyme Cocktails. (2018) (9)
Genome expansion by allopolyploidization in the fungal strain Coniochaeta 2T2.1 and its exceptional lignocellulolytic machinery (2019) (9)
CreA-mediated repression of gene expression occurs at low monosaccharide levels during fungal plant biomass conversion in a time and substrate dependent manner (2021) (9)
Draft Genome Sequence of a Rare Smut Relative, Tilletiaria anomala UBC 951 (2014) (9)
Draft Genome Assemblies of Five Robust Yarrowia lipolytica Strains Exhibiting High Lipid Production, Pentose Sugar Utilization, and Sugar Alcohol Secretion from Undetoxified Lignocellulosic Biomass Hydrolysates (2018) (9)
Fungal Genomics for Energy and Environment (2013) (9)
The role of zinc in the adaptive evolution of polar phytoplankton (2022) (9)
Identification of a gene encoding the last step of the L-rhamnose catabolic pathway in Aspergillus niger revealed the inducer of the pathway regulator. (2020) (9)
Coniella lustricola, a new species from submerged detritus (2017) (9)
Draft Genome Assemblies of Ionic Liquid-Resistant Yarrowia lipolytica PO1f and Its Superior Evolved Strain, YlCW001 (2020) (9)
Draft Genome Sequence of the Basidiomycete White-Rot Fungus Phlebia centrifuga (2018) (9)
Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus Aureobasidium pullulans to identify potential biocontrol genes (2021) (9)
Deletion of either the regulatory gene ara1 or metabolic gene xki1 in Trichoderma reesei leads to increased CAZyme gene expression on crude plant biomass (2019) (9)
The complete mitochondrial genome of the conifer needle endophyte, Phialocephala scopiformis DAOMC 229536 confirms evolutionary division within the fungal Phialocephala fortinii s.l. - Acephala appalanata species complex. (2017) (9)
Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules, dockerins, and pyruvate formate lyases on specific substrates (2021) (9)
IMITATION SWITCH is required for normal chromatin structure and gene repression in PRC2 target domains (2021) (8)
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales. (2021) (8)
Population genomics provides insights into the genetic basis of adaptive evolution in the mushroom-forming fungus Lentinula edodes (2021) (8)
Catabolic repression in early-diverging anaerobic fungi is partially mediated by natural antisense transcripts. (2018) (8)
Chromosome assembled and annotated genome sequence of Aspergillus flavus NRRL 3357 (2021) (8)
Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyper-diverse lineage of mushroom-forming fungi. (2021) (8)
An analysis of codon bias in six red yeast species (2018) (8)
Ecological generalism drives hyperdiversity of secondary metabolite gene clusters in xylarialean endophytes. (2021) (8)
Metagenome-assembled genomes of phytoplankton communities across the Arctic Circle (2020) (8)
Revisiting a ‘simple’ fungal metabolic pathway reveals redundancy, complexity and diversity (2021) (8)
Evolutionary priming and transition to the ectomycorrhizal habit in an iconic lineage of mushroom-forming fungi: is preadaptation a requirement? (2021) (8)
Intra-species genetic variability drives carbon metabolism and symbiotic host interactions in the ectomycorrhizal fungus Pisolithus microcarpus. (2020) (7)
Diploid genomic architecture of Nitzschia inconspicua, an elite biomass production diatom (2021) (7)
A Changing Landscape of Fungal Genomics (2013) (7)
Genome Sequences of Industrially Relevant Saccharomyces cerevisiae Strain M3707, Isolated from a Sample of Distillers Yeast and Four Haploid Derivatives (2013) (7)
Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network (2019) (7)
Diploid-dominant life cycles characterize the early evolution of Fungi (2022) (7)
Early diverging insect pathogenic fungi of the order Entomophthorales possess diverse and unique subtilisin-like serine proteases (2018) (6)
Proteomics for validation of automated gene model predictions. (2009) (6)
Phylogenomics and Comparative Genomics Highlight Specific Genetic Features in Ganoderma Species (2022) (6)
Sequence-based detection of distantly related proteins with the same fold. (2001) (6)
Genomic Signatures of a Major Adaptive Event in the Pathogenic Fungus Melampsora larici-populina (2021) (6)
A Multiomic Approach to Understand How Pleurotus eryngii Transforms Non-Woody Lignocellulosic Material (2021) (6)
Transposition of the acetabulum after iliac ischial osteotomy in the treatment of hip dysplasia in infants (2016) (6)
Kingdom-Wide Analysis of Fungal Protein-Coding and tRNA Genes Reveals Conserved Patterns of Adaptive Evolution (2022) (5)
Playing with FiRE: A genome resolved view of the soil microbiome responses to high severity forest wildfire (2021) (5)
Correction for Fernandez-Fueyo et al., Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis (2012) (5)
Sea anemone genome reveals the gene repertoire and genomic organization of the eumetazoan ancestor - eScholarship (2007) (5)
Widespread polycistronic transcripts in mushroom-forming fungi revealed by single-molecule long-read mRNA sequencing (2014) (5)
Sputnik V Effectiveness against Hospitalization with COVID-19 during Omicron Dominance (2022) (5)
Erratum: Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche (Proceedings of the National Academy of Sciences of the United States of America (2012) 109 (17501-17506) DOI: 10.1073/pnas.1206847109) (2013) (5)
Abscisic acid supports colonization of Eucalyptus grandis roots by the mutualistic ectomycorrhizal fungus Pisolithus microcarpus. (2021) (5)
Succession of physiological stages hallmarks the transcriptomic response of the fungus Aspergillus niger to lignocellulose (2019) (4)
Erratum for Walker et al., Full Genome of Phialocephala scopiformis DAOMC 229536, a Fungal Endophyte of Spruce Producing the Potent Anti-Insectan Compound Rugulosin (2016) (4)
Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens. (2019) (4)
Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies (2022) (4)
Simulated annealing for alpha-helical protein folding: searches in vicinity of the "molten globule" state. (1998) (4)
Erratum to: Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype (2015) (4)
Reverse transcriptase and intron number evolution. (2014) (4)
A thousand-genome panel retraces the global spread and climatic adaptation of a major crop pathogen (2022) (4)
Comparative Genomics and Transcriptomics To Analyze Fruiting Body Development in Filamentous Ascomycetes. (2019) (4)
Cocultivation of Anaerobic Fungi with Rumen Bacteria Establishes an Antagonistic Relationship (2021) (4)
Fungal and plant gene expression in the Tulasnella calospora - Serapias vomeracea symbiosis 1 provides cues on N pathways in orchid mycorrhiza (2016) (4)
A single-cell genomics pipeline for environmental microbial eukaryotes (2021) (4)
Comparative Genomics and Transcriptomics To Analyze Fruiting Body Development in Filamentous Ascomycetes (2019) (3)
Co‑cultivation of the anaerobic fungus Caecomyces churrovis with Methanobacterium bryantii enhances transcription of carbohydrate binding modules (2021) (3)
Within-Arctic horizontal gene transfer as a driver of convergent evolution in distantly related microalgae (2021) (3)
Multiomics in the central Arctic Ocean for benchmarking biodiversity change (2022) (3)
The homothallic mating-type locus of the conifer needle endophyte Phialocephala scopiformis DAOMC 229536 (order Helotiales). (2017) (3)
Formation of Mushrooms and Lignocellulose Degradation Encoded in the Genomes Sequence of Schizophyllum Commune (2011) (3)
Shallow Genome Sequencing for Phylogenomics of Mycorrhizal Fungi from Endangered Orchids (2019) (3)
Alternative splicing acting as a bridge in evolution. (2015) (3)
Genome sequence of Phytophthora ramorum: implications for management (2006) (3)
The polygenic basis of an ancient divergence in yeast thermotolerance (2017) (3)
Diverse Life Styles Encoded in the Genomes of Eighteen Dothideomycetes (2012) (3)
Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives (2021) (3)
Leveraging single-cell genomics to expand the fungal tree of life (2018) (3)
Unraveling the regulation of sugar beet pulp utilization in the industrially relevant fungus Aspergillus niger (2022) (3)
Evidence-based green algal genomics reveals marine diversity and ancestral characteristics of land plants (2016) (3)
The Melampsora americana population on Salix purpurea in the Great Lakes region is highly diverse with a contributory influence of clonality. (2021) (2)
Evidence for Lignocellulose-Decomposing Enzymes in the Genome and Transcriptome of the Aquatic Hyphomycete Clavariopsis aquatica (2021) (2)
Corrigendum to "Mixtures of aromatic compounds induce ligninolytic gene expression in the wood-rotting fungus Dichomitus squalens" [J. Biotechnol. 380 (2020) 35-39]. (2020) (2)
A thousand-genome panel retraces the global spread and adaptation of a major fungal crop pathogen (2023) (2)
Sequencing and Analysis of the Entire Genome of the Mycoparasitic Bioeffector Fungus Trichoderma asperelloides Strain T 203 (Hypocreales) (2022) (2)
Detailed analysis of the D-galactose catabolic pathways in Aspergillus niger reveals complexity at both metabolic and regulatory level. (2022) (2)
Eukaryotic Genome Annotation (2008) (2)
Nonenzymatic recombination of RNA by means of transesterification (2007) (2)
Diversity of genomic adaptations to post-fire environment in Pezizales fungi points to a crosstalk between charcoal tolerance and sexual development. (2022) (2)
Repertoire and Genomic Organization Sea Anemone Genome Reveals Ancestral Eumetazoan Gene (2014) (2)
Retracted and Republished from: “Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola” (2021) (2)
Correction: The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry (2015) (2)
The genome of Auriculariopsis ampla sheds light on fruiting body development and wood-decay of bark-inhabiting fungi (2019) (2)
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales (2021) (2)
The soybean rust pathogen Phakopsora pachyrhizi displays transposable element proliferation that correlates with broad host-range adaptation on legumes (2022) (2)
Target selection for structural genomics: a single genome approach. (2002) (2)
Single-cell RNA-seq reveals intrinsic and extrinsic regulatory heterogeneity in yeast responding to stress (2017) (2)
Yeasts and how they came to be (2019) (2)
Introduction: Overview of Fungal Genomics. (2018) (2)
Comparative genomics reveals a dynamic genome evolution in the ectomycorrhizal milk-cap (Lactarius) mushrooms. (2022) (2)
Author Correction: Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria (2018) (2)
Challenges in Whole-Genome Annotation of Pyrosequenced Fungal Genomes (2009) (2)
The Transcription Factor Roc1 Is a Key Regulator of Cellulose Degradation in the Wood-Decaying Mushroom Schizophyllum commune (2021) (2)
Salinity tolerance mechanisms of an Arctic Pelagophyte using comparative transcriptomic and gene expression analysis (2022) (2)
Chromosome-level genomes of multicellular algal sisters to land plants illuminate signaling network evolution (2023) (1)
Draft Genome Sequence of the Ectomycorrhizal Ascomycete Sphaerosporella brunnea (2019) (1)
AUTOMATION OF EVALUATION OF THE QUALITY OF DEBARKING WOOD IN THE DEBARKING DRUMS (2016) (1)
Genome expansion and lineage-specific genetic innovations in the world’s largest organisms (Armillaria) (2017) (1)
Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus (2017) (1)
Convergent evolution and horizontal gene transfer in Arctic Ocean microalgae (2022) (1)
High-Quality Draft Nuclear and Mitochondrial Genome Sequence of Fusarium oxysporum f. sp. albedinis strain 9, the Causal Agent of Bayoud Disease on Date Palm. (2022) (1)
Fungal Genomics Program (2012) (1)
for fungal cellulosomes revealed by comparative genomics. (2017) (1)
Cryptic genetic structure and copy-number variation in the 1 ubiquitous forest symbiotic fungus (2021) (1)
Large Scale Sequencing of Dothideomycetes Provides Insights into Genome Evolution and Adaptation (2015) (1)
Genomic innovation and horizontal gene transfer shaped plant colonization and biomass degradation strategies of a globally prevalent fungal pathogen (2022) (1)
Retraction Note: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi (2021) (1)
Integrated genomic and transcriptomic analysis reveals mycoparasitism as the ancestoral life style of Trichoderma (2011) (1)
RNA-editing in Basidiomycota, revisited (2021) (1)
Annotated Genome Sequence of the High-Biomass-Producing Yellow-Green Alga Tribonema minus (2021) (1)
TRANSITION STATE ANALOGUE OF PHOSPHOSERINE PHOSPHATASE (ALUMINUM FLUORIDE COMPLEX) (2002) (1)
Comparative analysis of twelve Dothideomycete plant pathogens (2011) (1)
Cryptic genetic structure and copy‐number variation in the ubiquitous forest symbiotic fungus Cenococcum geophilum (2021) (1)
Genome Sequencing and Comparative Analysis of the Biocontrol Agent Trichoderma harzianum sensu stricto TR274 (2015) (1)
Assessment of the carrying capacity of frozen and thawed soil with incomplete information on the state of its interaction with the logging system (2019) (1)
Secondary metabolism drives ecological breadth in the Xylariaceae (2021) (1)
Correction: Combating a Global Threat to a Clonal Crop: Banana Black Sigatoka Pathogen Pseudocercospora fijiensis (Synonym Mycosphaerella fijiensis) Genomes Reveal Clues for Disease Control (2016) (1)
Enemy or ally: a genomic approach to elucidate the lifestyle of Phyllosticta citrichinaensis (2021) (1)
A Genomic Catalog of Stress Response Genes in Anaerobic Fungi for Applications in Bioproduction (2021) (1)
Lignin deconstruction by anaerobic fungi (2023) (1)
Investigation of inter- and intraspecies variation through genome sequencing of Aspergillus section Nigri (2018) (1)
A remarkable expansion of oligopeptide transporter genes in rust fungi (Pucciniales) suggests a specialization in nutrients acquisition for obligate biotrophy (2022) (1)
Stepwise recombination suppression around the mating-type locus in the fungus Schizothecium tetrasporum (Ascomycota, Sordariales) (2022) (1)
Heterospecific Neighbor Plants Impact Root Microbiome Diversity and Molecular Function of Root Fungi (2021) (1)
Genome Sequence and Analysis of the Flavinogenic Yeast Candida membranifaciens IST 626 (2022) (1)
DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus. (2023) (1)
JGI Fungal Genomics Program (2011) (1)
Speciation Underpinned by Unexpected Molecular Diversity in the Mycorrhizal Fungal Genus Pisolithus (2023) (1)
MycoCosm, the JGI's Fungal Genome Portal for Comparative Genomic and Multiomics Data Analyses. (2023) (1)
Correction: Diverse Lifestyles and Strategies of Plant Pathogenesis Encoded in the Genomes of Eighteen Dothideomycetes Fungi (2013) (0)
Bacteriorhodopsin Coherent Control of Retinal Isomerization in (2007) (0)
Engineered Endolysin LysECD7-SMAP Reveals Antimicrobial Synergy with Antibiotics and Restores Sensitivity in Gram-negative Pathogens (2022) (0)
T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats (2023) (0)
Supplemental Science 2012 (2015) (0)
Genomic Evolution of the Ascomycete Yeasts (2015) (0)
High-quality genome of the basidiomycete yeast Dioszegia hungarica PDD-24b-2 isolated from cloud water (2022) (0)
The lichen symbiosis re-viewed through the genomes of Cladonia grayi and its algal partner Asterochloris glomerata (2019) (0)
Comparative Genomics and Transcriptomics To Analyze Fruiting Body Development in Filamentous Ascomycetes. (2019) (0)
Conservation and Expansion of Transcriptional Factor Repertoire in the Fusarium oxysporum Species Complex (2023) (0)
Symbiosis-driven development in an early branching metazoan (2022) (0)
The Aspmine - Comparative genomics analysis of 6 new species of Aspergillus section Sparsi, Ochraceorosei, Tanneri and Robusti (2018) (0)
Comparative Analysis of Transcription Factors Families across Fungal Tree of Life (2015) (0)
Genetic diversity of 100+ Aspergillus species - the aspMine analysis resource (2017) (0)
Lawrence Berkeley National Laboratory Recent Work Title Evolutionary genomics of the cold-Adapted diatom (2017) (0)
OP-MOLB160240 35..44 (2016) (0)
Annotation of Fungal Transposable Elements (2010) (0)
Comparative Genomics Tools for analysis of Six Dothideomycete Genomes (2009) (0)
Genome of the obligately alkaliphilic fungus Sodiomyces alkalinus reveals its adaptations to high pH. (2017) (0)
100TH ANNIVERSARY OF YURI MIKHAILOVICH PARFIONOVICH (2022) (0)
Functional Genomics of Lignocellulose Degradation in the Basidiomycete White Rot Schizophyllum commune (2013) (0)
Comparative Analysis of Thermophillic Fungal Genomes (2010) (0)
A Taste of Algal Genomes from the Joint Genome Institute (2012) (0)
Comparative Genomics of Mycorrhizal Symbiosis and Wood Decay in Forest Ecosystems (2014) (0)
Visual Omics of Fungi for Plant Biomass Deconstruction. (2016) (0)
Characterization of a novel polyextremotolerant fungus, Exophiala viscosa, with insights into its melanin regulation and ecological niche (2023) (0)
Comparative Reannotation of 21 Aspergillus Genomes (2013) (0)
Genomics of the first 100 Aspergilli (2017) (0)
Stepwise recombination suppression around the mating-type locus in an ascomycete fungus with self-fertile spores (2023) (0)
Genomic sequence of the xylose fermenting, insect-inhabiting yeast, Pichia stipitis (2007) (0)
aspMine - online comparative analysis of species from the Aspergillus genus (2016) (0)
the Get 3-Receptor Complex Structural Basis for Tail-Anchored Membrane Protein Biogenesis (2013) (0)
Lawrence Berkeley National Laboratory Recent Work Title Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales Permalink (2017) (0)
Proteome of the Wood Decay Fungus Fomitopsis pinicola Is Altered by Substrate (2022) (0)
OP-GBEV150117 1590..1601 (2015) (0)
The diatom Fragilariopsis cylindrus: A model alga to understand cold‐adapted life (2023) (0)
Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize (2012) (0)
CRYSTAL STRUCTURE OF PHOSPHOSERINE PHOSPHATASE IN APO FORM (2002) (0)
The establishment of Populus x Laccaria bicolor ectomycorrhiza requires the inactivation of MYC2 coordinated defense response with a key role for root terpene synthases (2022) (0)
Annotation of Eukaryotic Genomes (2009) (0)
nph12653-sup-0001-MethodsS1-FiguresS1-S7 (2) (2013) (0)
Friends and foes - comparative genomics of 23 Aspergillus Flavi species (2018) (0)
Fueling Future with Algal Genomics (2012) (0)
Dataset of 143 metagenome-assembled genomes from the Arctic and Atlantic Oceans, including 21 for eukaryotic organisms (2023) (0)
GalR, GalX and AraR co‐regulate d‐galactose and l‐arabinose utilization in Aspergillus nidulans (2022) (0)
SUBSTRATE BOUND PHOSPHOSERINE PHOSPHATASE COMPLEX STRUCTURE (2002) (0)
Genomic Encyclopedia of Fungi (2012) (0)
Phylogeonomics and Ecogenomics of the Mycorrhizal Symbiosis (2013) (0)
Lawrence Berkeley National Laboratory Recent Work Title Genome sequencing of four Aureobasidium pullulans varieties : biotechnological potential , stress tolerance , and description of new species Permalink (2014) (0)
Eukaryotic Genome Annotation and Analysis @ JGI (2008) (0)
What drives speciation? Examination into the evolutionary events of more than 100 Aspergillus species (2017) (0)
Lawrence Berkeley National Laboratory Recent Work Title Pan Genome of the Phytoplankton Emiliania Underpins its Global Distribution Permalink (2013) (0)
1 Gene expression of wood decay fungi Postia placenta and Phanerochaete 1 chrysosporium is significantly altered by plant species 2 3 4 5 (2011) (0)
Genomic determination of breeding systems and trans-specific evolution of HD MAT genes in suilloid fungi. (2023) (0)
Sequencing the Black Aspergilli species complex (2011) (0)
RETRACTED ARTICLE: Evolution of substrate-specific gene expression and RNA editing in brown rot wood-decaying fungi (2019) (0)
Characterization of chromosomal regions containing quantitative trait loci determining specificity towards bread and durum wheat cultivars in the fungal wheat pathogen Mycosphaerella graminicola (2007) (0)
Computational structural genomics: identifying protein targets for structural studies (2001) (0)
Genome-wide analysis of Corynespora cassiicola putative effectors involved in the CLF disease of rubber tree. (2017) (0)
Annotation of Ehux ESTs (2009) (0)
The genome of the polar eukaryotic microalga Coccomyxa subellipsoidea reveals traits of cold adaptation (2012) (0)
Genome mining of the genetic diversity in the Aspergillus genus - from a collection of more than 30 Aspergillus species (2015) (0)
Genus level analysis of secondary metabolism reveals the origin of Aspergillus hybrid NRPS-PKS gene clusters (2017) (0)
A global phylogenomic analysis of the shiitake genus Lentinula. (2023) (0)
Multi-omics profiling of the cold tolerant Monoraphidium minutum 26B-AM in response to abiotic stress (2022) (0)
Characterization of four endophytic fungi as potential consolidated bioprocessing hosts for conversion of lignocellulose into advanced biofuels (2017) (0)
Deciphering the potential niche of novel black yeast fungal isolates in a biological soil crust based on genomes, phenotyping, and melanin regulation (2021) (0)
Changing the Landscape of Fungal Genomics: New Trends (2017) (0)
Population genomics of a forest fungus reveals high gene flow and climate adaptation signatures (2022) (0)
The fungus that came in from the cold: dry rot’s pre-adapted ability to invade buildings (2018) (0)
Evolutionary History of Ascomyceteous Yeasts (2014) (0)
Microbial Responses to Pyrogenic Organic Matter : Cultivating Isolates , Ageing PyOM , Tracing Gas Fluxes , and Meta-analysis (2019) (0)
Co‑cultivation of anaerobic fungi with Clostridium acetobutylicum bolsters butyrate and butanol production from cellulose and lignocellulose (2022) (0)
Biotechnological Innovations through Fungi (2016) (0)
Diversity of carbohydrate metabolism in species of A spergillus (2015) (0)
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts (2018) (0)
Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network (2019) (0)
Major proliferation of transposable elements shaped the genome of the soybean rust pathogen Phakopsora pachyrhizi (2023) (0)
Identification of a gene encoding the last step of the L-rhamnose (2020) (0)
Near-Complete Genome Sequence of Zygosaccharomyces rouxii NRRL Y-64007, a Yeast Capable of Growing on Lignocellulosic Hydrolysates (2022) (0)
Mycoparasites, Gut Dwellers, and Saprotrophs: Phylogenomic Reconstructions and Comparative Analyses of Kickxellomycotina Fungi (2023) (0)
The genome and the evolution of the chordate karyotype (2008) (0)
Comparative Genome Analysis of Basidiomycete Fungi (2012) (0)
Gene cluster dynamics throughout the Aspergillus genus (2015) (0)
A Collection of Algal Genomes from the JGI (2012) (0)
Draft Genome Sequences of the Black Truffles Tuber brumale Vittad. and Tuber indicum Cook & Massee (2021) (0)
Single Cell Genomics and Transcriptomics for Unicellular Eukaryotes (2014) (0)
Genome-wide analysis of Corynespora cassiicola putative effectors involved in the CLF disease of rubber tree. Session 4. Poster 76 (2017) (0)
Genome sequencing of four Aureobasidium pullulans varieties: biotechnological potential, stress tolerance, and description of new species (2014) (0)
Author Correction: Genome sequencing of Rigidoporus microporus provides insights on genes important for wood decay, latex tolerance and interspecific fungal interactions (2020) (0)
Megaphylogeny resolves global patterns of mushroom evolution (2019) (0)
Single Cell Genomics and Transcriptomic for Unicellular Eukaryotes (2014) (0)
High EST Coverage Revealed Abundant Alternatively Spliced Transcripts (2010) (0)
Genome Portal, Joint Genome Institute (2012) (0)
Estimation of anti-orthopoxvirus immunity in Moscow residents and potential risks of spreading Monkeypox virus (2022) (0)
De Novo Genome Sequencing: Genome Annotation as a Tool to Assess Short Read Assemblies (2008) (0)
Assembly and Annotation of the Xenopus tropicalis Genome (2005) (0)
Genome sequences of two Phytophthora species responsible for Sudden Oak Death and Soybean Root Rot provide novel insights into their evolutionary origins and mechanisms of pathogenesis (2005) (0)
Improved gene annotation of the fungal wheat pathogen Zymoseptoria tritici based on combined Iso-Seq and RNA-Seq evidence (2023) (0)
The Heterobasidion irregulare genome project. (2013) (0)
Electrostatic induction method in controlling parameters of aero dispersion systems and early detecting thermal decomposition in cable products and other materials (2018) (0)
Challenges in Whole-Genome Annotation of Pyrosequenced Eukaryotic Genomes (2009) (0)
Comparative Genome Analysis of Basidiomycete Fungi Reveals the Genetic Signatures of Wood Degraders (2012) (0)
Genomes to Proteomes (2009) (0)
THE KINETICS OF HEMINAL RECOMBINATION IN A CAVITY (2003) (0)
ATCC 1015 versus enzyme-producing CBS 513 . 88 Aspergillus niger Comparative genomics of citric-acid-producing Material Supplemental (2011) (0)
The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum (2022) (0)
Evolution of Key Animal and Plant Functions Genome Reveals theChlamydomonasThe (2007) (0)
NEW TECHNOLOGICAL PROCESSES FOR CUTTING OPERATIONS (2016) (0)
Diversity of cytosine methylation across the fungal tree of life (2019) (0)
Genome Annotation at JGI (2005) (0)
Erratum for Myers et al., “Survey of Early-Diverging Lineages of Fungi Reveals Abundant and Diverse Mycoviruses” (2020) (0)
Phylogeny, morphology, virulence, ecology, and host range of Ordospora pajunii (Ordosporidae), a microsporidian symbiont of Daphnia spp (2023) (0)
Metagenome-assembled genomes of phytoplankton microbiomes from the Arctic and Atlantic Oceans (2022) (0)
Whole-Genus Sequencing: 300 Aspergilli (2015) (0)
Author Correction: Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria (2018) (0)
Fungal-Specific Transcription Factor AbPf 2 Activates Pathogenicity in Alternaria brassicicola Running head : Rapid conidial response to a host (2013) (0)
Genome Annotation: Going Beyond Human Genome (2005) (0)
Genome expansion and lineage-specific genetic innovations in the forest pathogenic fungi Armillaria (2017) (0)
SUBSTANTIATION METHOD FOR DETECTING SPOTS OF BARK ON THE BALANCE SHEETS FOR THE AUTOMATIC QUALITY SORTING DEBARKING (2017) (0)
Alpha-type Stirling engine mechanism parameterization (2019) (0)
Fungal Intron Evolution: Why a small genome has many introns? (2009) (0)
Purging genomes of contamination eliminates systematic bias from evolutionary analyses of ancestral genomes (2022) (0)
The pan-genome of Emiliania huxleyi (2010) (0)
Paul Pace Pathway Ku 70 Corrupts DNA Repair in the Absence of the Fanconi Anemia (0)
Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes (2017) (0)
Lawrence Berkeley National Laboratory Recent Work Title Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus (2016) (0)
A multi-omic characterization of temperature stress in a halotolerant Scenedesmus strain for algal biotechnology (2021) (0)
nph12653-sup-0002-TableS1-S11 (2013) (0)
Genome evolution and transcriptome plasticity associated with adaptation to monocot and eudicot plants in Colletotrichum fungi (2022) (0)
Eukaryotic Microbial Program (2008) (0)
Almost finished: the complete genome sequence of Mycosphaerella graminicola (2007) (0)
Assembly of Repeat Content Using Next Generation Sequencing Data (2014) (0)
Retraction for Wu et al., “Substrate-Specific Differential Gene Expression and RNA Editing in the Brown Rot Fungus Fomitopsis pinicola” (2021) (0)
Coniella lustricola, a new species from submerged detritus (2017) (0)
Genome-wide analysis of cytochrome P450s of Trichoderma spp.: annotation and evolutionary relationships (2018) (0)
The Aspergillus Mine – publishing bioinformatics (2016) (0)
Speciation over 200 million years – What makes an Aspergillus species (2016) (0)
HIGH RESOLUTION LIGANDED STRUCTURE OF PHOSPHOSERINE PHOSPHATASE (PI COMPLEX) (2002) (0)
Assembly, Annotation, and Analysis of Multiple Mycorrhizal Fungal Genomes (2013) (0)
First Annual U.S. Department of Energy Office of Science Joint Genome Institute User Meeting (2006) (0)
Simulation of pre-dried wood impregnation (2019) (0)
Fungal Genomics : Methods and Protocols (2018) (0)
SPRAY-INDUCED GENE SILENCING IDENTIFIES PATHOGEN PROCESSES CONTRIBUTING TO POWDERY MILDEW PROLIFERATION (2022) (0)
The transcriptional activator ClrB is crucial for the degradation of soybean hulls and guar gum in Aspergillus niger. (2023) (0)
How Aspergilli rearrange secondary metabolic gene clusters to generate new compounds (2016) (0)
Functional genomics gives new insights into the ectomycorrhizal degradation of chitin. (2023) (0)
Comparative Analysis of 35 Basidiomycete Genomes Reveals Diversity and Uniqueness of the Phylum (2013) (0)
Lawrence Berkeley National Laboratory Recent Work Title Expanding genomics of mycorrhizal symbiosis (2014) (0)
Fungal and oomycete genes galore (2007) (0)
Lawrence Berkeley National Laboratory Recent Work Title Fungi contribute critical but spatially varying roles in nitrogen and carbon cycling in acid mine drainage (2016) (0)
Engineering Synthetic Systems Inspired by Anaerobic Gut Fungi (2016) (0)
Determination of the Roles of Pyrophilous Microbes in the Breakdown and Sequestration of Pyrolyzed Forms of SOM (2017) (0)
Evolution and comparative genomics of the most common Trichoderma species (2019) (0)
An HMM approach expands the landscape of sesquiterpene cyclases across the kingdom Fungi. (2023) (0)
Functional and Comparative Genomics of Lignocellulose Degradation by Schizophyllum commune (2014) (0)
Lawrence Berkeley National Laboratory Recent Work Title Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus Permalink (2017) (0)
Comparative genomics of four Aspergillus species with focus on identification of specific secondary metabolite gene clusters (2016) (0)
Co-evolution of [i]Mortierella elongata[/i] and its endosymbiotic bacterium (2013) (0)
and evolution within (2018) (0)
Phylogenomic analysis of secondary metabolism genes sheds light on their evolution in Aspergilli (2016) (0)
Divergent Evolution of Early Terrestrial Fungi Reveals the Evolution of Mucormycosis Pathogenicity Factors (2022) (0)
Future of fungal genomics for energy and the environment (2014) (0)
Annotation and analysis of the genome of Phycomyces blakesleeanus, a model photoresponsive zygomycete (2007) (0)
Genetic dissection of interspecific differences in yeast thermotolerance (2018) (0)
MycoCosm, an Integrated Fungal Genomics Resource (2012) (0)
The Genome of Amphioxus and the Ancestral Proto-chordate (2006) (0)
Lawrence Berkeley National Laboratory Recent Work Title Genomes to Proteomes Permalink (2013) (0)
Ortholog prediction of the Aspergillus genus applicable for synthetic biology (2016) (0)
Conservation and Expansion of Transcriptional Factor Repertoire in the Fusarium oxysporum Species Complex (2023) (0)
Ancient nature of alternative splicing and functions of introns (2011) (0)
Whole Genome Annotation and Comparative Analysis of whiterot fungus Pleurotus ostreatus (2009) (0)
An annotation "minipipe" to rapidly assess genomic assemblies of 454 pyrosequencing reads (2008) (0)
The Amylolytic Regulator AmyR of Aspergillus niger Is Involved in Sucrose and Inulin Utilization in a Culture-Condition-Dependent Manner (2023) (0)
Harnessing the Flow of Data from Fungi at JGI (2016) (0)
Genomic and ecosystem evidence demonstrate the importance of selenium for the harmful alga, Aureococcus anophagefferens (2013) (0)
in plant-cell-wall remodelling (2019) (0)
Comparative genomics of Coniophora olivacea reveals different patterns of genome expansion in Boletales (2017) (0)
Erratum to: Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype (2015) (0)
Identification of enzymes for lignocellulose degradation in the genome and transcriptome of the aquatic hyphomycete Clavariopsis aquatica (2020) (0)
Genome sequencing of evolved aspergilli populations reveals robust genomes, transversions in A. flavus, and sexual aberrancy in non-homologous end-joining mutants (2019) (0)
Bacterial endosymbionts influence host sexuality and reveal reproductive genes of early divergent fungi (2017) (0)
Comparative genomics provides insights into the lifestyle and reveals functional heterogeneity of dark septate endophytic fungi (2018) (0)
Acquisition of host-derived carbon in biomass of ectomycorrhizal fungus pisolithus microcarpus is correlated to fungal carbon demand and plant defences. (2023) (0)
Lawrence Berkeley National Laboratory Recent Work Title The Genomes of the Fungal Plant Pathogens Cladosporium fulvum and Dothistroma septosporum Reveal Adaptation to Different Hosts and Lifestyles But Also Signatures of Common Ancestry Permalink (2012) (0)
Genome sequencing of the Trichoderma reesei QM9136 mutant identifies a truncation of the transcriptional regulator XYR1 as the cause for its cellulase-negative phenotype (2015) (0)
Last Annotation of Fugu rubripes at JGI (2005) (0)
ADDITIONAL TECHNICAL OPTIONS TO BOOST SECURITY, RELIABILITY AND ENERGY EFFICIENCY OF AGRICULTURAL MACHINERY (2020) (0)
Pezizomycetes genomes reveal the molecular basis of ectomycorrhizal truffle lifestyle (2018) (0)
Creating a Critical Mass of Data for Genome annotation and comparative Analysis (2008) (0)
Draft genome sequences of strains CBS6241 and CBS6242 of the basidiomycetous yeast Filobasidium floriforme (2021) (0)

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What Schools Are Affiliated With Igor V. Grigoriev?

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