Ilpo Vattulainen

Q: What Schools Are Affiliated With Ilpo Vattulainen

Ilpo Vattulainen is affiliated with the following schools: University of Southern Denmark, Tampere University, Helsinki University of Technology, Aalto University, University of Helsinki

Ilpo Vattulainen's AcademicInfluence.com Rankings

Ilpo Vattulainen

Physics

#6166

World Rank

#8073

Historical Rank

Biophysics

#246

World Rank

#257

Historical Rank

physics Degrees

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Physics

Ilpo Vattulainen's Degrees

PhD Physics University of Helsinki
Masters Physics University of Helsinki
Bachelors Physics University of Helsinki

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Ilpo Vattulainen's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Molecular lipidomics of exosomes released by PC-3 prostate cancer cells. (2013) (532)
Ordering effects of cholesterol and its analogues. (2009) (487)
Molecular dynamics simulations of lipid bilayers: major artifacts due to truncating electrostatic interactions. (2002) (350)
Under the influence of alcohol: the effect of ethanol and methanol on lipid bilayers. (2004) (318)
Martini 3: a general purpose force field for coarse-grained molecular dynamics (2021) (269)
Assessing the Nature of Lipid Raft Membranes (2007) (262)
Lessons of slicing membranes: interplay of packing, free area, and lateral diffusion in phospholipid/cholesterol bilayers. (2004) (253)
Multiscale modeling of emergent materials: biological and soft matter. (2009) (247)
BODIPY‐Cholesterol: A New Tool to Visualize Sterol Trafficking in Living Cells and Organisms (2008) (231)
Association of Lipidome Remodeling in the Adipocyte Membrane with Acquired Obesity in Humans (2011) (221)
Effect of NaCl and KCl on phosphatidylcholine and phosphatidylethanolamine lipid membranes: insight from atomic-scale simulations for understanding salt-induced effects in the plasma membrane. (2008) (207)
Antidepressant drugs act by directly binding to TRKB neurotrophin receptors (2019) (194)
Coarse-graining polymers with the MARTINI force-field: polystyrene as a benchmark case (2011) (190)
Cholesterol modulates glycolipid conformation and receptor activity. (2011) (189)
Integration schemes for dissipative particle dynamics simulations: From softly interacting systems towards hybrid models (2002) (175)
Polyunsaturation in lipid membranes: dynamic properties and lateral pressure profiles. (2007) (175)
Protein Crowding in Lipid Bilayers Gives Rise to Non-Gaussian Anomalous Lateral Diffusion of Phospholipids and Proteins (2016) (171)
Pore formation coupled to ion transport through lipid membranes as induced by transmembrane ionic charge imbalance: atomistic molecular dynamics study. (2005) (170)
3D pressure field in lipid membranes and membrane-protein complexes. (2009) (168)
Defect-mediated trafficking across cell membranes: insights from in silico modeling. (2010) (166)
The hydrophobic effect and its role in cold denaturation. (2010) (165)
Lipid Bilayers Driven to a Wrong Lane in Molecular Dynamics Simulations by Subtle Changes in Long-Range Electrostatic Interactions (2004) (161)
Atomic-scale structure and electrostatics of anionic palmitoyloleoylphosphatidylglycerol lipid bilayers with Na+ counterions. (2007) (155)
Membrane proteins diffuse as dynamic complexes with lipids. (2010) (154)
Structure and dynamics of sphingomyelin bilayer: insight gained through systematic comparison to phosphatidylcholine. (2004) (154)
Anomalous and normal diffusion of proteins and lipids in crowded lipid membranes. (2013) (152)
Multiscale Simulations of Biological Membranes: The Challenge To Understand Biological Phenomena in a Living Substance (2019) (151)
Cholesterol, sphingolipids, and glycolipids: what do we know about their role in raft-like membranes? (2014) (146)
Lateral sorting in model membranes by cholesterol-mediated hydrophobic matching (2011) (141)
Lateral diffusion in lipid membranes through collective flows. (2008) (140)
Cationic DMPC/DMTAP lipid bilayers: molecular dynamics study. (2003) (136)
How would you integrate the equations of motion in dissipative particle dynamics simulations (2003) (136)
Refined OPLS all-atom force field for saturated phosphatidylcholine bilayers at full hydration. (2014) (129)
Molecular mechanism for lipid flip-flops. (2007) (129)
Insight into the putative specific interactions between cholesterol, sphingomyelin, and palmitoyl-oleoyl phosphatidylcholine. (2007) (125)
Cholesterol oxidation products and their biological importance. (2016) (125)
Analysis of twisting of cellulose nanofibrils in atomistic molecular dynamics simulations. (2011) (122)
N-Glycosylation as determinant of epidermal growth factor receptor conformation in membranes (2015) (120)
Interplay of unsaturated phospholipids and cholesterol in membranes: effect of the double-bond position. (2008) (120)
Composition and lipid spatial distribution of HDL particles in subjects with low and high HDL-cholesterol[S] (2010) (118)
Coarse-grained model for phospholipid/cholesterol bilayer. (2004) (116)
Conformational Changes and Slow Dynamics through Microsecond Polarized Atomistic Molecular Simulation of an Integral Kv1.2 Ion Channel (2009) (115)
Excessive aggregation of membrane proteins in the Martini model (2017) (113)
Cholesterol Induces Specific Spatial and Orientational Order in Cholesterol/Phospholipid Membranes (2010) (112)
Effects of carbon nanoparticles on lipid membranes: a molecular simulation perspective (2009) (110)
Role of sterol type on lateral pressure profiles of lipid membranes affecting membrane protein functionality: Comparison between cholesterol, desmosterol, 7-dehydrocholesterol and ketosterol. (2007) (109)
Tilt: major factor in sterols' ordering capability in membranes. (2006) (108)
Reptational dynamics in dissipative particle dynamics simulations of polymer melts. (2005) (107)
Influence of DPH on the structure and dynamics of a DPPC bilayer. (2005) (107)
Microscopic mechanism for cold denaturation. (2007) (105)
Role of Lipids in Spheroidal High Density Lipoproteins (2010) (103)
Influence of chain length and unsaturation on sphingomyelin bilayers. (2006) (103)
Ion leakage through transient water pores in protein-free lipid membranes driven by transmembrane ionic charge imbalance. (2007) (100)
Redox-induced activation of the proton pump in the respiratory complex I (2015) (99)
Role of phosphatidylglycerols in the stability of bacterial membranes. (2008) (98)
Membrane potential and electrostatics of phospholipid bilayers with asymmetric transmembrane distribution of anionic lipids. (2008) (96)
Significance of Sterol Structural Specificity (2006) (95)
Mechanism of allosteric regulation of β2-adrenergic receptor by cholesterol (2016) (93)
Influence of ethanol on lipid membranes: from lateral pressure profiles to dynamics and partitioning. (2008) (93)
What happens if cholesterol is made smoother: importance of methyl substituents in cholesterol ring structure on phosphatidylcholine-sterol interaction. (2007) (92)
On Coarse-Graining by the Inverse Monte Carlo Method: Dissipative Particle Dynamics Simulations Made to a Precise Tool in Soft Matter Modeling (2002) (89)
Concerted diffusion of lipids in raft-like membranes. (2010) (87)
Impact of cholesterol on voids in phospholipid membranes. (2004) (86)
Novel Methods in Soft Matter Simulations (2013) (84)
An efficient auxin-inducible degron system with low basal degradation in human cells (2019) (84)
Atomistic Simulations of Functional Au144(SR)60 Gold Nanoparticles in Aqueous Environment (2012) (83)
Mechanistic principles underlying regulation of the actin cytoskeleton by phosphoinositides (2017) (83)
Distribution, Orientation, and Dynamics of DPH Probes in DPPC Bilayer (2004) (82)
Structure of spheroidal HDL particles revealed by combined atomistic and coarse-grained simulations. (2008) (81)
Mechanism of homodimeric cytokine receptor activation and dysregulation by oncogenic mutations (2020) (79)
Molecular organization of the tear fluid lipid layer. (2010) (77)
Effect of sphingomyelin headgroup size on molecular properties and interactions with cholesterol. (2010) (77)
Interdigitation of long-chain sphingomyelin induces coupling of membrane leaflets in a cholesterol dependent manner. (2016) (75)
Cationic Au Nanoparticle Binding with Plasma Membrane-like Lipid Bilayers: Potential Mechanism for Spontaneous Permeation to Cells Revealed by Atomistic Simulations (2014) (75)
Lipid transmembrane asymmetry and intrinsic membrane potential: two sides of the same coin. (2007) (75)
Atom-scale molecular interactions in lipid raft mixtures. (2009) (73)
Free Volume Properties of Sphingomyelin, DMPC, DPPC, and PLPC Bilayers (2005) (73)
Mechanism for translocation of fluoroquinolones across lipid membranes. (2012) (72)
Redox-coupled quinone dynamics in the respiratory complex I (2018) (70)
Nanoscale Membrane Domain Formation Driven by Cholesterol (2017) (69)
Calculation of the electrostatic potential of lipid bilayers from molecular dynamics simulations: methodological issues. (2009) (66)
Replacing the cholesterol hydroxyl group with the ketone group facilitates sterol flip-flop and promotes membrane fluidity. (2008) (65)
Mechanism of synergistic actin filament pointed end depolymerization by cyclase-associated protein and cofilin (2019) (65)
A MARTINI Coarse-Grained Model of a Thermoset Polyester Coating (2011) (65)
Electrostatics in Biomolecular Simulations: Where Are We Now and Where Are We Heading? (2008) (65)
Structural effects of small molecules on phospholipid bilayers investigated by molecular simulations (2004) (65)
Coarse-grained model for phospholipid/cholesterol bilayer employing inverse Monte Carlo with thermodynamic constraints. (2007) (65)
Influence of pyrene-labeling on fluid lipid membranes. (2006) (64)
Cryo-EM structure of the complete and ligand-saturated insulin receptor ectodomain (2019) (63)
Strain hardening, avalanches, and strain softening in dense cross-linked actin networks. (2008) (63)
Calcium Directly Regulates Phosphatidylinositol 4,5-Bisphosphate Headgroup Conformation and Recognition (2017) (63)
Glycolipid membranes through atomistic simulations: effect of glucose and galactose head groups on lipid bilayer properties. (2007) (62)
A comparative study of some pseudorandom number generators (1993) (59)
Diffusion of Integral Membrane Proteins in Protein-Rich Membranes. (2017) (59)
Role of glycolipids in lipid rafts: a view through atomistic molecular dynamics simulations with galactosylceramide. (2010) (59)
Cholesterol under oxidative stress-How lipid membranes sense oxidation as cholesterol is being replaced by oxysterols. (2015) (59)
Role of charged lipids in membrane structures - Insight given by simulations. (2016) (59)
Effect of monovalent salt on cationic lipid membranes as revealed by molecular dynamics simulations. (2005) (58)
How to tackle the issues in free energy simulations of long amphiphiles interacting with lipid membranes: convergence and local membrane deformations. (2014) (58)
Effect of kinks and concerted diffusion mechanisms on mass transport and growth on stepped metal surfaces (1997) (58)
Role of cardiolipins in the inner mitochondrial membrane: insight gained through atom-scale simulations. (2009) (57)
Do lipids retard the evaporation of the tear fluid? (2012) (55)
Systematic coarse graining from structure using internal states: application to phospholipid/cholesterol bilayer. (2009) (55)
Effect of double bond position on lipid bilayer properties: insight through atomistic simulations. (2007) (54)
doGlycans–Tools for Preparing Carbohydrate Structures for Atomistic Simulations of Glycoproteins, Glycolipids, and Carbohydrate Polymers for GROMACS (2017) (54)
Structural basis of actin monomer re-charging by cyclase-associated protein (2018) (54)
Molecular dynamics study of charged dendrimers in salt-free solution: effect of counterions. (2005) (54)
Low density lipoprotein: structure, dynamics, and interactions of apoB-100 with lipids (2011) (53)
Significance of cholesterol methyl groups. (2008) (53)
Atomistic simulations indicate cardiolipin to have an integral role in the structure of the cytochrome bc1 complex. (2013) (53)
Diffusion in Membranes (2005) (52)
Proton-coupled electron transfer and the role of water molecules in proton pumping by cytochrome c oxidase (2015) (52)
Lipid Exchange Mechanism of the Cholesteryl Ester Transfer Protein Clarified by Atomistic and Coarse-grained Simulations (2012) (51)
Key steps in unconventional secretion of fibroblast growth factor 2 reconstituted with purified components (2017) (51)
Influence of cis double-bond parametrization on lipid membrane properties: how seemingly insignificant details in force-field change even qualitative trends. (2008) (50)
Modeling of the triglyceride-rich core in lipoprotein particles. (2008) (50)
Free pyrene probes in gel and fluid membranes: perspective through atomistic simulations. (2007) (49)
Real-time translocation of fullerene reveals cell contraction. (2008) (49)
Atomistic simulations of anionic Au144(SR)60 nanoparticles interacting with asymmetric model lipid membranes. (2014) (48)
Protein shape change has a major effect on the gating energy of a mechanosensitive channel. (2011) (48)
High Density Lipoprotein Structural Changes and Drug Response in Lipidomic Profiles following the Long-Term Fenofibrate Therapy in the FIELD Substudy (2011) (48)
Enzymatic Oxidation of Cholesterol: Properties and Functional Effects of Cholestenone in Cell Membranes (2014) (47)
Strong preferences of dopamine and l‐dopa towards lipid head group: importance of lipid composition and implication for neurotransmitter metabolism (2012) (47)
Comparison of cholesterol and its direct precursors along the biosynthetic pathway: effects of cholesterol, desmosterol and 7-dehydrocholesterol on saturated and unsaturated lipid bilayers. (2008) (45)
Atomistic Model for Nearly Quantitative Simulations of Langmuir Monolayers. (2017) (45)
Lessons from the biophysics of interfaces: Lung surfactant and tear fluid (2011) (45)
The impact of lipid composition on the stability of the tear fluid lipid layer (2012) (45)
How well does cholesteryl hemisuccinate mimic cholesterol in saturated phospholipid bilayers? (2014) (44)
Sec14-nodulin proteins and the patterning of phosphoinositide landmarks for developmental control of membrane morphogenesis (2015) (43)
Influence of hydrodynamics on many-particle diffusion in 2D colloidal suspensions (2003) (43)
Experimental determination and computational interpretation of biophysical properties of lipid bilayers enriched by cholesteryl hemisuccinate. (2015) (42)
Interfacial tension and surface pressure of high density lipoprotein, low density lipoprotein, and related lipid droplets. (2012) (40)
Adatom dynamics and diffusion in a model of O/W(110) (1998) (39)
PEGylated Liposomes as Carriers of Hydrophobic Porphyrins. (2015) (38)
Transient ordered domains in single-component phospholipid bilayers. (2006) (38)
Complexes Comprised of Charged Dendrimers, Linear Polyelectrolytes, and Counterions: Insight through Coarse-Grained Molecular Dynamics Simulations (2008) (38)
Long-range interactions and parallel scalability in molecular simulations (2004) (38)
Assessment of mutation probabilities of KRAS G12 missense mutants and their long-timescale dynamics by atomistic molecular simulations and Markov state modeling (2018) (38)
Distribution and dynamics of quinones in the lipid bilayer mimicking the inner membrane of mitochondria. (2016) (37)
Free volume theory applied to lateral diffusion in Langmuir monolayers: atomistic simulations for a protein-free model of lung surfactant. (2010) (37)
Effects of DPH on DPPC-cholesterol membranes with varying concentrations of cholesterol: from local perturbations to limitations in fluorescence anisotropy experiments. (2010) (37)
Key role of water in proton transfer at the Qo-site of the cytochrome bc1 complex predicted by atomistic molecular dynamics simulations. (2013) (37)
Ion dynamics in cationic lipid bilayer systems in saline solutions. (2009) (36)
N- and O-methylation of sphingomyelin markedly affects its membrane properties and interactions with cholesterol. (2011) (36)
Mitochondrial membranes with mono- and divalent salt: changes induced by salt ions on structure and dynamics. (2009) (36)
Lipid simulations: a perspective on lipids in action. (2011) (36)
Molecular dynamics simulations reveal fundamental role of water as factor determining affinity of binding of beta-blocker nebivolol to beta(2)-adrenergic receptor. (2010) (35)
The challenges of understanding glycolipid functions: An open outlook based on molecular simulations. (2014) (35)
Dielectrophoresis of nanocolloids: A molecular dynamics study (2005) (34)
Atomistic simulations of phosphatidylcholines and cholesteryl esters in high-density lipoprotein-sized lipid droplet and trilayer: clues to cholesteryl ester transport and storage. (2009) (34)
Mechanical properties of cellulose nanofibrils determined through atomistic molecular dynamics simulations (2012) (33)
Selective effect of cell membrane on synaptic neurotransmission (2016) (33)
Asymmetric nature of lateral pressure profiles in supported lipid membranes and its implications for membrane protein functions (2009) (33)
Dynamics and scaling of two-dimensional polymers in a dilute solution. (2003) (32)
Interaction of hematoporphyrin with lipid membranes. (2012) (32)
Seipin traps triacylglycerols to facilitate their nanoscale clustering in the endoplasmic reticulum membrane. (2021) (32)
Phase Partitioning of GM1 and Its Bodipy-Labeled Analog Determine Their Different Binding to Cholera Toxin (2017) (30)
Memory effects and coverage dependence of surface diffusion in a model adsorption system (1999) (30)
Non-Arrhenius Behavior of Surface Diffusion near a Phase Transition Boundary (1997) (30)
Lipid domain morphologies in phosphatidylcholine-ceramide monolayers. (2009) (29)
Atomistic simulation studies of cholesteryl oleates: model for the core of lipoprotein particles. (2006) (28)
The Role of Temperature and Lipid Charge on Intake/Uptake of Cationic Gold Nanoparticles into Lipid Bilayers. (2019) (28)
Atomistic fingerprint of hyaluronan–CD44 binding (2017) (28)
Role of subunit III and its lipids in the molecular mechanism of cytochrome c oxidase. (2015) (27)
The role of hydrophobic matching on transmembrane helix packing in cells (2017) (27)
Understanding the Role of Lipids in Signaling Through Atomistic and Multiscale Simulations of Cell Membranes. (2019) (27)
Modeling Lipid-Sterol Bilayers: Applications to Structural Evolution, Lateral Diffusion, and Rafts (2004) (26)
Exploring the effect of xenon on biomembranes. (2005) (26)
How cardiolipin peroxidation alters the properties of the inner mitochondrial membrane? (2018) (26)
Probing biomembranes with positrons. (2009) (26)
Role of neutral lipids in tear fluid lipid layer: coarse-grained simulation study. (2012) (26)
Simulation study of lateral diffusion in lipid-sterol bilayer mixtures (2001) (26)
Response to comment by Almeida et al.: free area theories for lipid bilayers--predictive or not? (2005) (26)
Memory expansion for diffusion coefficients (1998) (26)
Molecular mechanisms of Charcot-Marie-Tooth neuropathy linked to mutations in human myelin protein P2 (2017) (26)
PIP2 and Talin Join Forces to Activate Integrin. (2015) (25)
Glucosylceramide modifies the LPS-induced inflammatory response in macrophages and the orientation of the LPS/TLR4 complex in silico (2018) (25)
Modeling glycolipids: take one. (2005) (25)
How to minimize dye-induced perturbations while studying biomembrane structure and dynamics: PEG linkers as a rational alternative. (2018) (24)
Chapter 2:Lateral Pressure Profiles in Lipid Membranes: Dependence on Molecular Composition (2010) (24)
Concerted regulation of npc2 binding to endosomal/lysosomal membranes by bis(monoacylglycero)phosphate and sphingomyelin (2017) (24)
Why is the sn-2 chain of monounsaturated glycerophospholipids usually unsaturated whereas the sn-1 chain is saturated? Studies of 1-stearoyl-2-oleoyl-sn-glycero-3-phosphatidylcholine (SOPC) and 1-oleoyl-2-stearoyl-sn-glycero-3-phosphatidylcholine (OSPC) membranes with and without cholesterol. (2009) (23)
Intrinsic potential of cell membranes: opposite effects of lipid transmembrane asymmetry and asymmetric salt ion distribution. (2009) (23)
How endoglucanase enzymes act on cellulose nanofibrils: role of amorphous regions revealed by atomistic simulations (2015) (23)
Cationic dimyristoylphosphatidylcholine and dioleoyloxytrimethylammonium propane lipid bilayers: atomistic insight for structure and dynamics. (2012) (23)
Parameterization of the prosthetic redox centers of the bacterial cytochrome bc1 complex for atomistic molecular dynamics simulations (2013) (23)
Effect of PEGylation on drug entry into lipid bilayer. (2014) (22)
The Integrin Receptor in Biologically Relevant Bilayers: Insights from Molecular Dynamics Simulations (2016) (22)
Interaction of fusidic acid with lipid membranes: Implications to the mechanism of antibiotic activity. (2006) (22)
Mission Impossible: Find a Random Pseudorandom Number Generator (1995) (21)
Mutually Exclusive Roles of SHARPIN in Integrin Inactivation and NF-κB Signaling (2015) (21)
Ionic cloud distribution close to a charged surface in the presence of salt (2007) (21)
Conformational analysis of lipid molecules by self-organizing maps. (2007) (21)
Ceramide-1-phosphate, in contrast to ceramide, is not segregated into lateral lipid domains in phosphatidylcholine bilayers. (2009) (20)
A Ceramide-Regulated Element in the Late Endosomal Protein LAPTM4B Controls Amino Acid Transporter Interaction (2018) (20)
Bobbing of Oxysterols: Molecular Mechanism for Translocation of Tail-Oxidized Sterols through Biological Membranes. (2018) (20)
Properties of the membrane binding component of catechol-O-methyltransferase revealed by atomistic molecular dynamics simulations. (2011) (19)
Tracer diffusion in colloidal suspensions under dilute and crowded conditions with hydrodynamic interactions. (2012) (19)
Glycosylation and Lipids Working in Concert Direct CD2 Ectodomain Orientation and Presentation (2017) (19)
Dynamics and energetics of the mammalian phosphatidylinositol transfer protein phospholipid exchange cycle (2017) (19)
Effects of Membrane PEGylation on Entry and Location of Antifungal Drug Itraconazole and Their Pharmacological Implications. (2017) (18)
Long-chain GM1 gangliosides alter transmembrane domain registration through interdigitation. (2017) (18)
Dynamics and scaling of polymers in a dilute solution: analytical treatment in two and higher dimensions. (2005) (17)
Non-equilibrium effects in profile evolution measurements of surface diffusion (2000) (17)
On Atomistic Models for Molecular Oxygen. (2017) (17)
Dynamics of the Peripheral Membrane Protein P2 from Human Myelin Measured by Neutron Scattering—A Comparison between Wild-Type Protein and a Hinge Mutant (2015) (17)
DNA overstretching transition: ionic strength effects. (2005) (17)
Interaction of C70 fullerene with the Kv1.2 potassium channel. (2012) (17)
Diffusion and mobility of interacting particles on stepped surfaces along the ledges (2004) (16)
New tests of random numbers for simulations in physical systems (1994) (16)
What Can We Learn about Cholesterol's Transmembrane Distribution Based on Cholesterol-Induced Changes in Membrane Dipole Potential? (2016) (16)
Lipid bilayers driven to a wrong lane in molecular dynamics simulations by truncation of long-range electrostatic interactions (2003) (16)
Reduced level of docosahexaenoic acid shifts GPCR neuroreceptors to less ordered membrane regions (2019) (16)
A dynamical mean field theory for the study of surface diffusion constants (1997) (16)
How Anacetrapib Inhibits the Activity of the Cholesteryl Ester Transfer Protein? Perspective through Atomistic Simulations (2014) (16)
Can pyrene probes be used to measure lateral pressure profiles of lipid membranes? Perspective through atomistic simulations. (2014) (15)
Pulmonary Surfactant Lipid Reorganization Induced by the Adsorption of the Oligomeric Surfactant Protein B Complex. (2020) (15)
The F1 loop of the talin head domain acts as a gatekeeper in integrin activation and clustering (2020) (15)
Effect of galactosylceramide on the dynamics of cholesterol-rich lipid membranes. (2011) (15)
Atomistic determinants of co-enzyme Q reduction at the Qi-site of the cytochrome bc1 complex (2016) (15)
Apolipoprotein A-I mimetic peptide 4F blocks sphingomyelinase-induced LDL aggregation[S] (2015) (15)
Structure and dynamics of a human myelin protein P2 portal region mutant indicate opening of the β barrel in fatty acid binding proteins (2018) (15)
Framework for testing random numbers in parallel calculations. (1999) (15)
How To Minimize Artifacts in Atomistic Simulations of Membrane Proteins, Whose Crystal Structure Is Heavily Engineered: β₂-Adrenergic Receptor in the Spotlight. (2015) (14)
Calcium Assists Dopamine Release by Preventing Aggregation on the Inner Leaflet of Presynaptic Vesicles. (2017) (14)
Data including GROMACS input files for atomistic molecular dynamics simulations of mixed, asymmetric bilayers including molecular topologies, equilibrated structures, and force field for lipids compatible with OPLS-AA parameters (2016) (14)
Membrane-Dependent Binding and Entry Mechanism of Dopamine into Its Receptor (2020) (14)
Co-Exposure with Fullerene May Strengthen Health Effects of Organic Industrial Chemicals (2014) (14)
Interplay between steps and nonequilibrium effects in surface diffusion for a lattice-gas model of OW(110). (2007) (14)
Quantitative Assessment of Methods Used To Obtain Rate Constants from Molecular Dynamics Simulations-Translocation of Cholesterol across Lipid Bilayers. (2018) (14)
High‐content imaging and structure‐based predictions reveal functional differences between Niemann‐Pick C1 variants (2019) (13)
Crystalline Wax Esters Regulate the Evaporation Resistance of Tear Film Lipid Layers Associated with Dry Eye Syndrome (2019) (13)
Drug-Lipid Membrane Interaction Mechanisms Revealed Through Molecular Simulations (2012) (13)
Tail-Oxidized Cholesterol Enhances Membrane Permeability for Small Solutes (2020) (12)
Negatively Charged Gangliosides Promote Membrane Association of Amphipathic Neurotransmitters (2018) (12)
Cholesterol Protects the Oxidized Lipid Bilayer from Water Injury: An All-Atom Molecular Dynamics Study (2018) (12)
Temperature-induced structural transition in-situ in porcine lens--changes observed in void size distribution. (2010) (12)
Lipid membranes: Theory and simulations bridged to experiments. (2016) (12)
SHANK3 conformation regulates direct actin binding and crosstalk with Rap1 signaling (2021) (12)
Cryo-EM, X-ray diffraction, and atomistic simulations reveal determinants for the formation of a supramolecular myelin-like proteolipid lattice (2020) (11)
Molecular mechanism for inhibition of twinfilin by phosphoinositides (2018) (11)
Enhanced dielectrophoresis of nanocolloids by dimer formation (2007) (11)
Insights into activation and RNA binding of trp RNA‐binding attenuation protein (TRAP) through all‐atom simulations (2008) (11)
Non-equilibrium effects in profile spreading on stepped surfaces (2003) (11)
Complexity of seemingly simple lipid nanodiscs. (2020) (11)
Revealing structural and dynamical properties of high density lipoproteins through molecular simulations (2012) (10)
Nonequilibrium effects in diffusion of interacting particles on vicinal surfaces. (2005) (10)
Comment on “Surface diffusion near the points corresponding to continuous phase transitions” [J. Chem. Phys. 109, 3197 (1998)] (1999) (10)
Dynamical mean field theory: an efficient method to study surface diffusion coefficients (1998) (10)
Memory effects in Arrhenius barriers for surface diffusion (1998) (10)
Nanoparticle-Membrane Interactions: The Role of Temperature and Lipid Charge on Intake/Uptake of Cationic Gold Nanoparticles into Lipid Bilayers (Small 23/2019) (2019) (10)
The Devil Is in the Details: What Do We Really Track in Single-Particle Tracking Experiments of Diffusion in Biological Membranes? (2019) (10)
Antidepressants act by binding to the cholesterol-interaction site at TRKB neurotrophin receptor (2019) (9)
Vattulainen et al. Reply (1998) (9)
How to link pyrene to its host lipid to minimize the extent of membrane perturbations and to optimize pyrene dimer formation. (2014) (9)
Understanding the Functional Properties of Lipid Heterogeneity in Pulmonary Surfactant Monolayers at the Atomistic Level (2020) (9)
Desipramine induces disorder in cholesterol-rich membranes: implications for viral trafficking (2009) (9)
Velocity correlations and memory functions in surface diffusion (2000) (8)
N-Glycosylation can selectively block or foster different receptor–ligand binding modes (2021) (8)
The Na,K-ATPase acts upstream of phosphoinositide PI(4,5)P2 facilitating unconventional secretion of Fibroblast Growth Factor 2 (2020) (7)
Nonexponential decay of velocity correlations in surface diffusion: The role of interactions and ordering (2000) (7)
Effects of quenched impurities on surface diffusion, spreading, and ordering of O/W(110) (2002) (7)
Oxidation of cholesterol does not alter significantly its uptake into high-density lipoprotein particles. (2015) (6)
Collective Dynamics in Lipid Membranes: From Pore Formation to Flip-Flops (2009) (6)
Density profile evolution and nonequilibrium effects in partial and full spreading measurements of surface diffusion (2001) (6)
Surface diffusion of long chainlike molecules: The role of memory effects and stiffness on effective diffusion barriers (2000) (6)
Cholesterol promotes both head group visibility and clustering of PI(4,5)P2 driving unconventional secretion of Fibroblast Growth Factor 2 (2021) (5)
Machine learning in the analysis of biomolecular simulations (2022) (5)
Modeling of Biologically Motivated Soft Matter Systems (2010) (5)
Building Synthetic Sterols Computationally – Unlocking the Secrets of Evolution? (2015) (5)
Atomistic Simulations of Functional Au 144 (SR) 60 Gold Nanoparticles in (2012) (5)
The Na,K-ATPase acts upstream of phosphoinositide PI(4,5)P2 facilitating unconventional secretion of Fibroblast Growth Factor 2. (2020) (5)
Comment on “Finite-size scaling behavior of the tracer surface diffusion coefficient near a second-order phase transition” by F. Nieto et al. (2000) (5)
Oxidation of Cholesterol Changes the Permeability of Lipid Membranes (2017) (4)
Seipin traps triacylglycerols to facilitate their nanoscale clustering in the ER membrane (2020) (4)
Influence of Implementation on the Properties of Pseudorandom Number Generators with a Carry Bit (1993) (4)
Diffusion and mobility of interacting particles on stepped surfaces (2003) (4)
Atomistic determinants of coenzyme Q reduction at the Qi-site of the cytochrome bc 1 complex (2016) (4)
Biogenesis of Nascent High Density Lipoprotein Particles. (2015) (4)
How to measure velocity correlations from surface diffusion experiments by STM (2001) (3)
Atomistic Molecular Dynamics Simulations of Mitochondrial DNA Polymerase γ: Novel Mechanisms of Function and Pathogenesis. (2017) (3)
Long-Range Interactions in Molecular Simulations: Accuracy and Speed (2004) (3)
Visualization of complex processes in lipid systems using computer simulations and molecular graphics. (2009) (3)
Composition and lipid spatial distribution of High Density Lipoprotein particles in subjects with low and high HDL-cholesterol (2010) (3)
How Well Does BODIPY-Cholesteryl Ester Mimic Unlabeled Cholesteryl Esters in High Density Lipoprotein Particles? (2015) (3)
Publisher’s Note: Dynamics and scaling of two-dimensional polymers in a dilute solution [Phys. Rev. E68, 050102 (2003)] (2003) (2)
Modeling of Lipid Membranes and Lipoproteins (2014) (2)
Glycosylation Affects the Conformational Behavior of EGFR (2016) (2)
Nanoparticle builder: new software for preparing nanoparticles for molecular dynamics simulations (2017) (2)
Atomistic Molecular Dynamics Simulations of Mitochondrial DNA Polymerase gamma Euro , Liliya 2017-03-07 (2)
Structure of spheroidal HDL particles revealed by combined atomistic and coarse-grained simulations (Biophysical Journal (2008) 94,6 (2306-2319)) (2008) (2)
Structure and dynamics of a human myelin protein P 2 portal region mutant indicate opening of the β barrel in fatty acid binding proteins (2018) (2)
Correction to "On Atomistic Models for Molecular Oxygen". (2020) (2)
Conformational dynamics regulate SHANK3 actin and Rap1 binding (2020) (2)
Non-equilibrium surface diffusion of the O/W(110) system (1996) (2)
Author Correction: An efficient auxin-inducible degron system with low basal degradation in human cells (2019) (2)
Dimerization of the pulmonary surfactant protein C in a membrane environment (2022) (2)
Probing The Microstructure Of Biomaterials With Positrons (2009) (1)
Oxidation of Cholesterol Changes the Physical Properties of Lipid Membranes (2016) (1)
Exploring the effect of anaesthetic gases on biomembranes (2005) (1)
Reply to the comment by Graziano on [The hydrophobic effect and its role in cold denaturation] (2010) (1)
Antidepressants act by binding to the transmembrane domain of TRKB receptor (2019) (1)
Maturation of the SARS-CoV-2 virus is regulated by dimerization of its main protease (2022) (1)
Effect of replacement of cholesterol hydroxyl group by ketone group (2007) (1)
Topology and structure of Au144(SRCOO-)60 from "Atomistic Simulations of Functional Au144(SR)60 Gold Nanoparticles in Aqueous Environment" (2012) (1)
Coarse-Grained Simulations Of Lipid Membranes With Various Concentrations Of Embedded Proteins (2017) (1)
Author response: Mechanism of allosteric regulation of β2-adrenergic receptor by cholesterol (2016) (1)
Determinants for forming a supramolecular myelin-like proteolipid lattice (2020) (1)
Studies of Surface Diffusion Under Non-Equilibrium Conditions (1997) (1)
Dissecting the mechanisms of environment sensitivity of smart probes for quantitative assessment of membrane properties. (2023) (1)
PI(4,5)P2 Binds to Phospholipase C Delta 1 in a Cholesterol Concentration Dependent Manner: Perspective on Implications to PI(4,5)P2-Binding Proteins (2017) (1)
Flip-Flops of Lipids in the Absence of Atp: Role of Membrane Proteins (2014) (1)
Cholesterol promotes clustering of PI(4,5)P2 driving unconventional secretion of FGF2 (2022) (1)
Differences between lateral pressure profiles of one-component and many-component lipid membranes (2007) (1)
Reply to the comment by Uebing and Zhdanov (1998) (1)
Publisher Correction: Molecular mechanisms of Charcot-Marie-Tooth neuropathy linked to mutations in human myelin protein P2 (2018) (1)
Molecular dynamics simulations of neutral lipids found in lipoproteins (2007) (1)
Structure of tear film lipid layer models containing cholesteryl esters and lysophosphatidylcholine (2018) (1)
Molecules Dancing in Membranes (2005) (1)
Avalanches, hardening and softening in dense cross-linked actin networks (2008) (1)
Development of a Syrian hamster anti-PD-L1 monoclonal antibody enables oncolytic adenoviral immunotherapy modelling in an immunocompetent virus replication permissive setting (2023) (1)
Systematic Approach to Coarse-Graining of Molecular Descriptions and Interactions with Applications to Lipid Membranes (2008) (1)
The Integrin Receptor in Biologically Relevant Bilayers: Insights from Molecular Dynamics Simulations (2016) (1)
SELF-ORGANIZING MAPS IN CONFORMATIONAL ANALYSIS OF LIPIDS (0)
Characterization of the effects of ethanol and methanol on lipid bilayers (2005) (0)
Specific Spatial and Orientational Order in Phospholipid Membranes Induced by Cholesterol (2010) (0)
NaCl and Cationic lipid bilayer dynamics (2009) (0)
IMULATION S TUDIES FOR C OLLECTIVE A DATOM D IFFUSION S TEPPED S URFACES (2004) (0)
Protocol to Avoid Possible Artifacts in Atomistic Simulation of GPCR Proteins whose Crystal Structure is Heavily Engineered (2016) (0)
Simulations Of Gpa-Based Dimers Of Various Lengths In Depc, Dopc, And Dlpc Bilayers, Part 1/2 (2017) (0)
Targeting a broad spectrum of KRAS-mutant cancers by hyperactivation-induced cell death (2022) (0)
Glucosylceramide modifies the LPS-induced inflammatory response in macrophages and the orientation of the LPS/TLR4 complex in silico (2018) (0)
Substrate Binding at the Qo-Site of the Bacterial Cytochrome bc1 Complex Predicted by Atomistic Molecular Dynamics Simulations (2013) (0)
Binding of Hyaluronic Acid to Its CD 44 Receptor (2014) (0)
Molecular dynamics modeling of polymer fragment dielectrophoresis (2005) (0)
Model Studies of Collective Diffusion (2001) (0)
SoftSimu2002 - Novel Methods in Soft Matter Simulations (2002) (0)
Atomistic simulations of cationic lipid membranes: effect of salt (2005) (0)
Molecular dynamics studies of spontaneous pore formation and ion transport through lipid membranes due to cationic electrochemical gradient (2006) (0)
Interaction of Fullerene with Model Cell Membranes: a Computer Simulation Study (2009) (0)
Oxysterol Translocation through Lipid Bilayers (2018) (0)
What Happens for Sterol Dynamics When Cholesterol is Enzymatically Oxidized (2014) (0)
Dynamics, kinetics and partitioning of alcohols in lipid membranes (2006) (0)
Author response for "Cholesterol recognition motifs in the transmembrane domain of the tyrosine kinase receptor family: the case of TRKB" (2021) (0)
Non-equilibrium effects in spreading and diffusion on stepped surfaces. (2004) (0)
Molecular Basis of GLUT4 in Glucose Transport: Atomistic Molecular Dynamics Study (2017) (0)
Memory Effects and Memory Functions in Surface Diffusion (2001) (0)
THE ROLE OF GLYCOLIPIDS IN LIPID RAFTS: MOLECULAR DYNAMICS SIMULATIONS OF MEMBRANES WITH GALACTOSYLCERAMIDE (2007) (0)
Characterisation of Coexisting Liquid Phases in Mixtures of Dipalmitoylphosphatidylcholine and Cholesterol (2014) (0)
Lateral Pressure Profile and Curvature Frustration in Mechanosensitive Channel Gating (2010) (0)
A Comparison Of Ceramide And Ceramide-1-phosphate Miscibility In Phosphatidylcholine Bilayers (2009) (0)
SCRAMBLASE PROPERTIES OF RHODOPSIN STUDIED WITH BIASED MOLECULAR DYNAMICS SIMULATIONS (2011) (0)
Computational investigation of the redox-coupled proton pumping in respiratory complex I (2016) (0)
Surfactant Proteins SP-B and SP-C in Pulmonary Surfactant Monolayers: Physical Properties Controlled by Specific Protein–Lipid Interactions (2022) (0)
ANTTI LAMBERG CURVATURE EFFECTS IN LIPOPROTEIN FUSION (2011) (0)
The Interactions of Dopamine and L-Dopa with Lipid Headgroup and its Implication for Neurotransmitters Metabolism (2013) (0)
Lateral pressure profiles of lipid membranes - Dependence on lipid composition (2007) (0)
Computer simulation studies for collective adatom stepped surfaces (2007) (0)
Molecular dynamics simulation of glycolipids bilayer (2005) (0)
Dynamics and Lateral Pressure Profiles of Lipid Rafts (2008) (0)
How Different Ctxs Bind to a Lipid Nanobio Membrane? (2013) (0)
The Effect of Membrane Polyunsaturated Fatty Acids on Receptor Partitioning to Ordered Domains (2017) (0)
The Effect of Membrane Polyunsaturated Fatty Acids on Receptor Partitioning to Ordered Domains (2017) (0)
How the Properties of Nanodiscs Are Modulated by their Size and Lipid Content (2018) (0)
N-glycosylation blocks and simultaneously fosters different receptor-ligand binding sites: the chameleonic CD44–hyaluronan interaction (2020) (0)
Cholesterol Protects the Oxidized Lipid Bilayer from Water Injury: An All-Atom Molecular Dynamics Study (2018) (0)
Conference Report on "SoftSimu2002 - Novel Methods in Soft Matter Simulations" (2002) (0)
University of Southern Denmark Atomistic fingerprint of hyaluronan-CD44 binding Vuorio, (2017) (0)
New Paradigms for the Mechanisms of Thrombopoietin Receptor Activation and Dysregulation By the JAK2V617F Mutation (2019) (0)
31G3D03 - Glycosylation as a means to modulate membrane receptor conformation and visibility (2021) (0)
Bridging a Gap Between Cytochrome Bc1 Complex Structure and Function (2014) (0)
Molecular dynamics study of β-sheet in a lipoprotein-like lipid particle containing cholesteryl esters and POPCs (2007) (0)
How does membrane composition modulate cholesterol carrier protein NPC2 (2017) (0)
Revealing the Microstructural Changes in Tissues In-Situ with Positron Annihilation Spectroscopy (2010) (0)
Barriers in the Eye and Lungs that Maintain Biological Functions (2021) (0)
21aXJ-7 Had a drink last night? Molecular dynamics simulations of the effect of alcohols on biomembranes (2005) (0)
Disulfide bridge-dependent dimerization triggers FGF2 membrane translocation into the extracellular space (2023) (0)
Presence of oxysterols affects permeability of lipid bilayers (2017) (0)
Hidden Errors in Simulations and the Quality of Pseudorandom Numbers (1993) (0)
THE STRUCTURE OF HUMAN TEAR FLUID AT THE AIR-WATER INTERFACE - A COMPUTATIONAL STUDY (2007) (0)
Syddansk Universitet Apolipoprotein A-I mimetic peptide 4 F blocks sphingomyelinase-induced LDL aggregation (2015) (0)
Multiscale simulations of domain formation in single-component phospholipid bilayers (2007) (0)
ENERGETICS OF PHOSPHOLIPID TRANSLOCATION MEDIATED BY β 2-ADRENERGIC RECEPTOR (2014) (0)
Structural basis of actin monomer re-charging by cyclase-associated protein (2018) (0)
The Role of Hydrophobic Mismatch on Transmembrane Helix Dimerization in Living Cells (2019) (0)
Author response: Key steps in unconventional secretion of fibroblast growth factor 2 reconstituted with purified components (2017) (0)
Diffusion driving the formation of functional nanoscale machines in cell membranes (2015) (0)
Specific interactions between cholesterol, sphingomyelin and POPC (2006) (0)
Multi-scale modeling environment for nanocellulose applications (2010) (0)
Computational Studies of the Integrin Receptor in Complex Biologically Relevant Lipid Bilayers (2013) (0)
Molecules D ancing in M embranes (2005) (0)
Molecular dynamics modeling of nanoparticle dielectrophoresis (2006) (0)
Interaction of Hematoporphyrin with Lipid Membranes B (2012) (0)
Cholesterol esters form supercooled lipid droplets whose nucleation is facilitated by triacylglycerols (2023) (0)
Towards more systematic selection of coarse-grained degrees of freedom (2007) (0)
MECHANISMS OF RHODOPSIN-MEDIATED LIPID FLIP-FLOP (2011) (0)
Site-directed mutagenesis studies of h 15-LOX-1 and their effects on inhibitor potency (2015) (0)
Publisher Correction: Molecular mechanisms of Charcot-Marie-Tooth neuropathy linked to mutations in human myelin protein P2 (2018) (0)
Atomistic Simulations of Functional Gold Nanoparticles Au144(Sr)60 Interacting with Membranes (2013) (0)
Cell Membrane Composition Affects GPCR Aggregation (2014) (0)
Random-Lattice Simulations of Biomembranes (2004) (0)
Marja Hyvönen 1970-2016 (2016) (0)
DEFINING THE ROLE OF SYNAPTIC MEMBRANE FOR NEUROTRANS- MITTER ENTRY INTO ADENOSINE 2A RECEPTOR (2013) (0)
Cholesterol-dependent effect of antidepressants on activation BDNF receptor (TRKB) (2019) (0)
The α1 subunit of the Na,K-ATPase acts upstream of PI(4,5)P2 facilitating unconventional secretion of Fibroblast Growth Factor 2 from tumor cells (2019) (0)
Regulation of cell dynamics by rapid transport of integrins through the biosynthetic pathway (2022) (0)
Ionic Cloud Distribution Close a Charged Surface and Overcharging (2008) (0)
SAMI RISSANEN BINDING OF CHOLERA TOXIN TO LIPID BILAYERS OF VARIOUS (2013) (0)
Title : Tracer diffusion in colloidal suspensions under dilute and crowded conditions with hydrodynamic interactions Year : 2012 Version : Final (2015) (0)
Syddansk Universitet The Integrin Receptor in Biologically Relevant Bilayers Insights from Molecular Dynamics Simulations (2016) (0)
Preliminary models of spheroidal HDL particles through molecular dynamics (2007) (0)
Effect of farnesol on phospholipid membranes (2007) (0)
Phosphorylation Alters the Transmembrane Binding Interface Between Phospholamban and SERCA (2014) (0)
Molecular nature of the conformational and electrostatic coupling in the proton pumping mechanism of complex I (2014) (0)
Clarifying the Roles of Cardiolipin (2014) (0)
Protein Crowding and Cholesterol Increase Cell Membrane Viscosity in a Temperature Dependent Manner (2023) (0)
The Key Role of Temperature and Lipid Composition in Modulating the Intake of Gold Nanoparticles into the Plasma Membrane (2019) (0)
Cholesterol Modulated Interdigitation of Long-Chain Sphingomyelin and Glycolipids (2016) (0)
From Discoidal to Spheroidal HDL particles through All Atom and Coarse Grained Molecular Dynamics simulations (2008) (0)
Molecular mechanisms of Charcot-Marie-Tooth neuropathy linked to mutations in human myelin protein P2 (2017) (0)
Systematic coarse-graining on multicomponent lipid bilayers (2006) (0)
Dissecting the mechanisms of environment sensitivity of smart probes for quantitative assessment of membrane properties (2022) (0)
Initial Steps in the PI(4,5)P 2 dependent Fibroblast Growth Factor 2 Oligomerization (2018) (0)
human insulin receptor ectodomain bound by 4 insulin (2019) (0)
Distribution of Ion Clouds with Respect to a Charged Surface in the Presence of Salt (2008) (0)
Had a drink last night? How alcohol interacts with biological membranes (2006) (0)
Lipids: Organization and Aggregation (2008) (0)
Author ' s personal copy The hydrophobic effect and its role in cold denaturation q (2010) (0)
A cholesterol analog stabilizes the human β2-adrenergic receptor nonlinearly with temperature (2022) (0)
DOPC lipid bilayer with PYR10 simulation trajectory and files from Franova et al. BBA 1838 (2014) 1406–1411 (2015) (0)
Atomistic fingerprint of hyaluronan – CD 44 binding Citation (2017) (0)
From Discoidal to Spheroidal HDL particles through Coarse Grained and All Atom Molecular Dynamics Simulations (2008) (0)
Diffusion of Proteins and Lipids in Protein-Rich Membranes (2018) (0)
Itraconazole Perturbs Behavior of Fluorescent Probes in Lipid Bilayer (2019) (0)
Simulations Of Gpa-Based Dimers Of Various Lengths In Depc, Dopc, And Dlpc Bilayers, Part 2/2 (2017) (0)
Nanoscale Membrane Domain Formation Driven by Cholesterol Citation (2017) (0)
Cholesterol methyl groups—molecular fossils? (2007) (0)
Diffusion mechanisms of lipids in bilayers (2006) (0)
A critical role for cholesterol in PI(4,5)P2-dependent unconventional secretion of fibroblast growth factor 2 (2022) (0)
Direct Visualization and Quantification of Doc2B-Mediated Membrane Fusion (2014) (0)
STRUCTURE AND MEDIUM EFFECTS - A COMPUTATIONAL STUDY ON THE PHOTOPHYSICS OF CIPROFLOXACINE (2007) (0)
Membrane properties and sterol interactions of sphingomyelin head group analogs (2010) (0)
Influence of free pyrene probes on gel and fluid membranes through atomistic simulations (2007) (0)
Vitamin E acetate alters properties of pulmonary surfactant (2022) (0)
Structure Previews BiogenesisofNascentHighDensityLipoproteinParticles (2015) (0)
SOFT MATTER PHYSICS AND BIOMEMBRANES (2013) (0)
Lipids, Neurotransmitters and their Receptors (2017) (0)
Nanoscale Membrane Domain Formation Driven by Cholesterol (2017) (0)
How to Ecien tly Deal with Electrostatic Interactions in Soft Matter Simulations: The Reaction-Field Approach (2004) (0)
Water matters : role of water in the binding selectivity of β-blockers to human β-adrenergic receptors (2013) (0)
Transport and effects of chlorpromazine on POPC and POPS lipid bilayers (2007) (0)

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