Ilya Nemenman

Q: What Schools Are Affiliated With Ilya Nemenman

Ilya Nemenman is affiliated with the following schools: Emory University, Princeton University, Moscow Institute of Physics and Technology

Ilya Nemenman's AcademicInfluence.com Rankings

Ilya Nemenman

Physics

#5173

World Rank

#6963

Historical Rank

Biophysics

#405

World Rank

#417

Historical Rank

physics Degrees

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Physics

Ilya Nemenman's Degrees

Bachelors Physics Moscow Institute of Physics and Technology

Why Is Ilya Nemenman Influential?

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According to Wikipedia, Ilya Mark Nemenman is a theoretical physicist at Emory University, where he is a Winship Distinguished Research Professor of Physics and Biology. He is known for his studies of information processing in biological systems and for developing coarse-grained models of these systems. He is a Fellow of the American Physical Society for "his contributions to theoretical biological physics, especially information processing in a variety of living systems, and for the development of coarse-grained modeling methods of such systems". He is a Simons Investigator and James S. McDonnell Foundation Complex Systems Scholar. He also served in the Chair Line of the Division of Biological Physics of the American Physical Society, from 2013–2018. Nemenman also was a founder of the q-bio conference, and is a general member of the Aspen Center for Physics.

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Ilya Nemenman's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

ARACNE: An Algorithm for the Reconstruction of Gene Regulatory Networks in a Mammalian Cellular Context (2004) (2516)
Information Transduction Capacity of Noisy Biochemical Signaling Networks (2011) (467)
Reverse engineering cellular networks (2006) (381)
Entropy and information in neural spike trains: progress on the sampling problem. (2003) (271)
Entropy and Inference, Revisited (2001) (259)
Genome-wide Identification of Post-translational Modulators of Transcription Factor Activity in Human B-Cells (2009) (233)
Predictability, Complexity, and Learning (2000) (171)
Automated adaptive inference of phenomenological dynamical models (2015) (155)
Networks Information Transduction Capacity of Noisy Biochemical Signaling (2011) (140)
Optimal Signal Processing in Small Stochastic Biochemical Networks (2006) (125)
Cell–cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis (2015) (114)
The Berry phase and the pump flux in stochastic chemical kinetics (2006) (107)
Cellular noise and information transmission. (2014) (104)
Neural coding of natural stimuli: information at sub-millisecond resolution (2007) (102)
Zipf's law and criticality in multivariate data without fine-tuning. (2013) (100)
Complexity through nonextensivity (2001) (91)
Motor control by precisely timed spike patterns (2016) (78)
Universal geometric theory of mesoscopic stochastic pumps and reversible ratchets. (2007) (75)
Efficient Inference of Parsimonious Phenomenological Models of Cellular Dynamics Using S-Systems and Alternating Regression (2014) (75)
The simplicity of completion time distributions for common complex biochemical processes (2009) (72)
Limits to the precision of gradient sensing with spatial communication and temporal integration (2015) (59)
Genotype to Phenotype Mapping and the Fitness Landscape of the E. coli lac Promoter (2012) (58)
Neural Coding of Natural Stimuli: Information at Sub-Millisecond Resolution (2008) (55)
Adiabatic coarse-graining and simulations of stochastic biochemical networks (2009) (55)
Millisecond-Scale Motor Encoding in a Cortical Vocal Area (2014) (48)
Millisecond Spike Timing Codes for Motor Control (2018) (48)
Multivariate dependence and genetic networks inference. (2010) (46)
Information theory, multivariate dependence, and genetic network inference (2004) (41)
On the Sufficiency of Pairwise Interactions in Maximum Entropy Models of Networks (2015) (39)
Coincidences and Estimation of Entropies of Random Variables with Large Cardinalities (2011) (33)
Occam factors and model-independent Bayesian learning of continuous distributions (2000) (32)
Genome-Wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes (2005) (31)
Reconstruction of Metabolic Networks from High‐Throughput Metabolite Profiling Data (2007) (28)
Specificity and completion time distributions of biochemical processes. (2009) (25)
Determinants of bistability in induction of the Escherichia coli lac operon. (2008) (25)
Process pathway inference via time series analysis (2002) (24)
Physical Limit to Concentration Sensing in a Changing Environment. (2019) (24)
Mesoscopic statistical properties of multistep enzyme-mediated reactions. (2008) (24)
On the detectability of quantum spacetime foam with gravitational-wave interferometers (1999) (24)
Simple biochemical networks allow accurate sensing of multiple ligands with a single receptor (2015) (23)
Receptor crosstalk improves concentration sensing of multiple ligands (2018) (23)
Growth of bacteria in 3-d colonies (2016) (22)
Information theory and adaptation (2010) (21)
Quantitative Biology: Theory, Computational Methods, and Models (2018) (21)
Inference of entropies of discrete random variables with unknown cardinalities (2002) (20)
Estimation of mutual information for real-valued data with error bars and controlled bias (2019) (20)
Explicit Green's function of a boundary value problem for a sphere and trapped flux analysis in Gravity Probe B experiment (1999) (20)
Gain control in molecular information processing: lessons from neuroscience (2011) (15)
Information theory and learning: a physical approach (2000) (15)
Statistical properties of multistep enzyme-mediated reactions (2008) (15)
On the influence of the gravitating vacuum on the dynamics of homogeneous isotropic models in gauge theories of gravity (1995) (14)
Luria–Delbrück, revisited: the classic experiment does not rule out Lamarckian evolution (2017) (14)
Chance, long tails, and inference in a non-Gaussian, Bayesian theory of vocal learning in songbirds (2017) (13)
Model Cortical Association Fields Account for the Time Course and Dependence on Target Complexity of Human Contour Perception (2011) (13)
Randomly connected networks generate emergent selectivity and predict decoding properties of large populations of neurons (2019) (12)
Latent dynamical variables produce signatures of spatiotemporal criticality in large biological systems (2020) (11)
Reverse-engineering biological networks from large data sets (2017) (11)
Automated, predictive, and interpretable inference of Caenorhabditis elegans escape dynamics (2018) (11)
Fluctuation-Dissipation Theorem and Models of Learning (2004) (10)
Stereotypical Escape Behavior in Caenorhabditis elegans Allows Quantification of Effective Heat Stimulus Level (2016) (10)
Predictive Information in a Nonequilibrium Critical Model (2012) (9)
Ergodic and non-ergodic anomalous diffusion in coupled stochastic processes (2009) (9)
Potential and field singularity at a surface point charge (2003) (9)
Minimal subtraction and the Callan-Symanzik equation (1998) (9)
Fitness in time-dependent environments includes a geometric phase contribution (2011) (9)
Universal Properties of Concentration Sensing in Large Ligand-Receptor Networks. (2019) (8)
Novel Computing Paradigms: Quo Vadis? (2008) (8)
Thermodynamic Computing (2019) (8)
Time-dependent corrections to effective rate and event statistics in Michaelis-Menten kinetics. (2010) (8)
q-bio 2007: a watershed moment in modern biology (2007) (7)
Quantifying evolvability in small biological networks. (2008) (7)
Speeding up Evolutionary Search by Small Fitness Fluctuations (2010) (6)
Constrained brain volume in an efficient coding model explains the fraction of excitatory and inhibitory neurons in sensory cortices (2020) (6)
Automated adaptive inference of coarse-grained dynamical models in systems biology (2014) (6)
Learning Continuous Distributions: Simulations With Field Theoretic Priors (2000) (6)
A large number of receptors may reduce cellular response time variation (2012) (6)
On The Reconstruction of Interaction Networks with Applications to Transcriptional Regulation (2004) (5)
Effects of receptor correlations on molecular information transmission. (2016) (5)
Serially regulated biological networks fully realise a constrained set of functions. (2008) (5)
Reverse Engineering of the Yeast Transcriptional Network Using the ARACNE algorithm (2004) (4)
Mass Conservation and Inference of Metabolic Networks from High-Throughput Mass Spectrometry Data (2010) (4)
Neural coding of a natural stimulus ensemble: Uncovering information at sub-millisecond resolution (2006) (4)
Role of spatial averaging in multicellular gradient sensing (2015) (4)
Estimation of mutual information for real-valued data with error bars and controlled bias. (2019) (4)
Population-expression models of immune response (2012) (4)
Selected papers from the First q-bio Conference on Cellular Information Processing. (2008) (4)
The Third q-bio Conference on Cellular Information Processing. (2010) (2)
Editorial: Selected papers from the Second q-bio Conference on Cellular Information Processing (2009) (2)
Unsupervised Bayesian Ising Approximation for decoding neural activity and other biological dictionaries (2022) (2)
Coarse-graining stochastic biochemical networks: quasi-stationary approximation and fast simulations using a stochastic path integral technique (2008) (2)
Increased adaptability to sudden environmental change can more than make up for the two-fold cost of males (2018) (2)
Statistical properties of large data sets with linear latent features. (2021) (2)
Special section dedicated to The Sixth q-bio Conference: meeting report and preface (2013) (2)
Progress in estimation of mutual information for real-valued data (2018) (2)
Selected papers from the Fourth Annual q-bio Conference on Cellular Information Processing (2011) (2)
The Seventh q-bio Conference: meeting report and preface (2014) (2)
Director Field Model of the Primary Visual Cortex for Contour Detection (2013) (2)
Latent Dynamical Variables Produce Signatures of Spatiotemporal Criticality in Large Biological Systems. (2021) (2)
Precise spatial memory in local random networks. (2019) (2)
A mathematical framework for falsifiability (2015) (2)
The Fifth Annual q-bio Conference on Cellular Information Processing (2012) (2)
Precise spatial spatial memory in local random networks (2019) (1)
Of fishes and birthdays: Efficient estimation of polymer configurational entropies (2015) (1)
On the interaction of point charges in an arbitrary domain (2001) (1)
Chance, long tails, and inference: a non-Gaussian, Bayesian theory of vocal learning in songbirds (2017) (1)
How is sensory information processed? (2004) (1)
Single variant bottleneck in the early dynamics of H. influenzae bacteremia in neonatal rats questions the theory of independent action (2016) (1)
Intrinsic Motivation in Dynamical Control Systems (2022) (0)
Improving Image Segmentation with Adaptive, Recurrent, Spiking Neural Network Models of the Primary Visual Cortex (2017) (0)
Evolution of Bacterial Suicide (2013) (0)
Distilling the logic of behavioral dynamics using automated inference (2018) (0)
Increased dimensionality of cell-cell communication can decrease the precision of gradient sensing (2016) (0)
Inferring phenomenological models of first passage processes (2020) (0)
Bayesian Ising approximation for learning dictionaries of multispike timing patterns in premotor neurons (2017) (0)
Unsupervised Bayesian Ising Approximation for revealing the neural dictionary in songbirds (2019) (0)
Information transmission by receptors correlated through ligand diffusion (2014) (0)
Building phenomenological models of complex biological processes (2009) (0)
The dynamics of the thermal memory of \textit{C.~elegans} (2014) (0)
Erratum: “Specificity and completion time distributions of biochemical processes” [J. Chem. Phys. 131, 235103 (2009)] (2012) (0)
PNAS Plus Significance Statements (2016) (0)
On the Sufficiency of Pairwise Interactions in Maximum Entropy Models of Networks (2016) (0)
Today A mathematical framework for falsifiability (2016) (0)
Predictive Information in a Nonequilibrium Critical Model (2013) (0)
Standing Variation of Beneficial Mutations is Sufficient for Maintenance of Anisogamy (2018) (0)
Sensing multiple ligands with single receptor (2015) (0)
Form, Function, and Evolvability in Biological Networks (2008) (0)
On geometric measures of regulatory complexity (2005) (0)
Ising models of strongly coupled biological networks with multivariate interactions (2013) (0)
Accurate quantification of bumblebee foraging (2019) (0)
Anomalous diffusion and scaling in the dynamics of coupled stochastic processes. (2009) (0)
Theoretical and Experimental Study of Bacterial Colony Growth in 3D (2014) (0)
Gain control in molecular signaling without feedback (2009) (0)
Quantifying falsifiability of scientific theories (2017) (0)
Measuring and modeling the dynamics of the thermal memory of C. elegans (2020) (0)
RESEARCHARTICLE Growth of bacteria in 3-d colonies (0)
M N / 0 51 00 30 v 2 2 M ar 2 00 6 Genome-wide Discovery of Modulators of Transcriptional Interactions in Human B Lymphocytes (2006) (0)
Quantification of Nociceptive Escape Response in \textit{C.elegans} (2013) (0)
Stochastic path integrals and geometric theory of mesoscopic stochastic pumps and reversible ratchets. (2008) (0)
Top-down models explain key aspects of a Speed-of-Sight character recognition task (2010) (0)
Reconstructing biological dictionaries: How does neural code translate into behavior? (2019) (0)
Generative probabilistic matrix model of data with different low-dimensional linear latent structures (2022) (0)
Continuum neural dynamics models for visual object identification (2013) (0)
Quantifying evolvability in small biological (2009) (0)
Selection, adaptation, and predictive information in changing environments (2014) (0)
Who is your neighbor? Inferring locality from pairwise correlations (2019) (0)
Exploring neural code in natural environments (2010) (0)
Dynamics of Bayesian non-Gaussian sensorimotor learning with multiple time scales (2017) (0)
Stochastic waiting times of complex biochemical reactions may exhibit universal behavior (2009) (0)
Inference of pain stimulus level from stereotypical behavioral response of \textit{C.elegans} allows quantification of effects of anesthesia and mutation (2016) (0)
Genotype to Phenotype Mapping of the E. coli lac Promoter (2014) (0)
Coincidences And Entropies of Random Variables with Very Large Alphabets (2005) (0)
Low probability states, data statistics, and entropy estimation (2022) (0)
Fitness in fluctuating environments (2011) (0)
Non-Gaussian Bayesian theory of sensorimotor learning with multiple timescales (2019) (0)
Time to Quantify Falsifiability (2015) (0)
Fundamental limits to the precision of multicellular sensing (2014) (0)
Special issue dedicated to the first Q-bio conference on cellular information processing (2008) (0)
The geometric theory of mesoscopic stochastic pump and reversible ratchet effects (2007) (0)
Biological Networks: Does Function Follow Form? (2005) (0)
Precision of multicellular gradient sensing with cell-cell communication (2016) (0)
An Information-Theoretic Order Parameter for Non-Equilibrium Systems (2011) (0)
Anomalous diffusion and scaling in coupled stochastic processes (2009) (0)
A dynamical model of C. elegans thermal preference reveals independent excitatory and inhibitory learning pathways. (2023) (0)
Common complex biochemical processes exhibit simple completion time distributions (2009) (0)
Can correlations among receptors affect the information about the stimulus (2014) (0)
UniEnt: uniform entropy model for the dynamics of a neuronal population (2016) (0)
Nonlinear Bayesian cue integration explains the dynamics of vocal learning (2016) (0)
The eighth q-bio conference: meeting report and special issue preface (2015) (0)
Quantification of Nociceptive Escape Response in C.elegans (2013) (0)
Coarse-graining stochastic biochemical networks (2013) (0)
Multi-dimensional structure of C. elegans thermal learning (2022) (0)
Songbird Respiration is Controlled by Multispike Patterns at Millisecond Temporal Resolution (2016) (0)
Automated adaptive model inference to predict biological network dynamics (2013) (0)
Correction: Model Cortical Association Fields Account for the Time Course and Dependence on Target Complexity of Human Contour Perception (2011) (0)
Inferring phenomenological models for dynamics of Purkinje neurons (2017) (0)
Predictive filtering in the phototransduction cascade (2005) (0)
Editorial Board and Contents (2018) (0)
Continuum dynamics model of the primary visual cortex for contour detection (2013) (0)
Ballistic deposition with memory: a new universality class of surface growth with a new scaling law (2022) (0)
Coarse-graining stochastic biochemical networks: adiabaticity and fast simulations (2008) (0)
Simple models do not explain early dynamics of {\em H.~influenzae} bacteremia (2015) (0)
Cell-cell communication enhances the capacity of cell ensembles to sense shallow gradients during morphogenesis (2015) (0)
Conditional Network Analysis Identifies Candidate Regulator Genes in Human B Cells (2004) (0)
Evaluating the loosening coefficient of large-lump rock masses on the load-carrying belt of a steep-sloping conveyor with partitions (1984) (0)
Avalanche scaling in large neural populations with distributed coupling to multiple dynamical latent variables (2023) (0)
Physical limit to concentration sensing in a changing environment (2019) (0)

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What Schools Are Affiliated With Ilya Nemenman?

Ilya Nemenman is affiliated with the following schools:

Ilya Nemenman's Academic­Influence.com Rankings