Ilya Shmulevich

Q: What Schools Are Affiliated With Ilya Shmulevich

Ilya Shmulevich is affiliated with the following schools: Tampere University, MD Anderson Cancer Center, National Autonomous University of Mexico, Purdue University

Ilya Shmulevich's AcademicInfluence.com Rankings

Ilya Shmulevich

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#6835

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#444

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Ilya Shmulevich

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#7706

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#10956

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#6070

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Ilya Shmulevich's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Comprehensive molecular portraits of human breast tumors (2012) (7791)
Comprehensive molecular characterization of human colon and rectal cancer (2012) (6141)
The Cancer Genome Atlas Pan-Cancer analysis project (2013) (5479)
Comprehensive molecular characterization of gastric adenocarcinoma (2014) (4496)
Integrated genomic characterization of endometrial carcinoma (2013) (3708)
The Somatic Genomic Landscape of Glioblastoma (2013) (3693)
The Immune Landscape of Cancer (2018) (2766)
Comprehensive, Integrative Genomic Analysis of Diffuse Lower-Grade Gliomas. (2015) (2211)
Genomic Classification of Cutaneous Melanoma (2015) (2143)
The Molecular Taxonomy of Primary Prostate Cancer (2015) (2116)
Integrated Genomic Characterization of Papillary Thyroid Carcinoma (2014) (2007)
Comprehensive molecular characterization of urothelial bladder carcinoma (2014) (1748)
Comprehensive molecular characterization of clear cell renal cell carcinoma (2013) (1724)
Oncogenic Signaling Pathways in The Cancer Genome Atlas (2018) (1646)
Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks (2002) (1569)
Comprehensive and Integrative Genomic Characterization of Hepatocellular Carcinoma (2017) (1514)
Comprehensive Characterization of Cancer Driver Genes and Mutations (2018) (1360)
Integrated genomic and molecular characterization of cervical cancer (2017) (762)
Genomic and Molecular Landscape of DNA Damage Repair Deficiency across The Cancer Genome Atlas (2018) (600)
From Boolean to probabilistic Boolean networks as models of genetic regulatory networks (2002) (580)
Comprehensive and Integrated Genomic Characterization of Adult Soft Tissue Sarcomas (2017) (577)
Spatial Organization and Molecular Correlation of Tumor-Infiltrating Lymphocytes Using Deep Learning on Pathology Images. (2018) (552)
Pathogenic Germline Variants in 10,389 Adult Cancers (2018) (501)
Association of BRCA1 and BRCA2 mutations with survival, chemotherapy sensitivity, and gene mutator phenotype in patients with ovarian cancer. (2011) (499)
Comprehensive Analysis of Alternative Splicing Across Tumors from 8,705 Patients (2018) (471)
Patterns of somatic structural variation in human cancer genomes (2020) (377)
Integrated analyses identify a master microRNA regulatory network for the mesenchymal subtype in serous ovarian cancer. (2013) (359)
Driver Fusions and Their Implications in the Development and Treatment of Human Cancers (2018) (332)
Gene perturbation and intervention in probabilistic Boolean networks. (2002) (295)
On Learning Gene Regulatory Networks Under the Boolean Network Model (2003) (280)
Activities and sensitivities in boolean network models. (2004) (248)
Eukaryotic cells are dynamically ordered or critical but not chaotic. (2005) (238)
Probabilistic Boolean Networks - The Modeling and Control of Gene Regulatory Networks (2010) (220)
Gene expression dynamics in the macrophage exhibit criticality (2008) (212)
Binary analysis and optimization-based normalization of gene expression data (2002) (203)
Critical Dynamics in Genetic Regulatory Networks: Examples from Four Kingdoms (2008) (198)
Comprehensive molecular characterization of mitochondrial genomes in human cancers (2017) (197)
Fewer permutations, more accurate P-values (2009) (194)
Robust quantification of in vitro angiogenesis through image analysis (2005) (194)
Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics (2008) (191)
Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context (2018) (188)
Differential gene and protein expression in primary breast malignancies and their lymph node metastases as revealed by combined cDNA microarray and tissue microarray analysis (2004) (183)
Role of the transcription factor C/EBPδ in a regulatory circuit that discriminates between transient and persistent Toll-like receptor 4-induced signals (2009) (168)
Clinical significance of CTNNB1 mutation and Wnt pathway activation in endometrioid endometrial carcinoma. (2014) (163)
Dynamic analysis of MAPK signaling using a high-throughput microfluidic single-cell imaging platform (2009) (159)
Systematic Analysis of Splice-Site-Creating Mutations in Cancer (2018) (156)
Highly accurate two-gene classifier for differentiating gastrointestinal stromal tumors and leiomyosarcomas (2007) (155)
Steady-State Analysis of Genetic Regulatory Networks Modelled by Probabilistic Boolean Networks (2003) (152)
CTCF haploinsufficiency destabilizes DNA methylation and predisposes to cancer. (2014) (145)
Identification of combination gene sets for glioma classification. (2002) (143)
The role of certain Post classes in Boolean network models of genetic networks (2003) (139)
CONTROL OF STATIONARY BEHAVIOR IN PROBABILISTIC BOOLEAN NETWORKS BY MEANS OF STRUCTURAL INTERVENTION (2002) (137)
The Somatic Genomic Landscape of Glioblastoma (2014) (135)
MiR‐506 suppresses proliferation and induces senescence by directly targeting the CDK4/6–FOXM1 axis in ovarian cancer (2014) (125)
Relationships between probabilistic Boolean networks and dynamic Bayesian networks as models of gene regulatory networks (2006) (119)
Growing genetic regulatory networks from seed genes (2004) (118)
Gene-pair expression signatures reveal lineage control (2013) (117)
Post-transcriptional regulatory network of epithelial-to-mesenchymal and mesenchymal-to-epithelial transitions (2014) (116)
NGAL decreases E-cadherin-mediated cell-cell adhesion and increases cell motility and invasion through Rac1 in colon carcinoma cells (2009) (113)
The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View (2020) (111)
Steady-state probabilities for attractors in probabilistic Boolean networks (2005) (107)
Propagating organization: an enquiry (2007) (106)
Augmentation of response to chemotherapy by microRNA-506 through regulation of RAD51 in serous ovarian cancers. (2015) (103)
Bright Field Microscopy as an Alternative to Whole Cell Fluorescence in Automated Analysis of Macrophage Images (2009) (99)
The Immune Landscape of Cancer. (2019) (99)
Combining Dependent P-values with an Empirical Adaptation of Brown’s Method (2015) (97)
Genomically amplified Akt3 activates DNA repair pathway and promotes glioma progression (2015) (95)
Critical networks exhibit maximal information diversity in structure-dynamics relationships. (2008) (90)
Two mature products of MIR-491 coordinate to suppress key cancer hallmarks in glioblastoma (2014) (89)
Perceptual Issues in Music Pattern Recognition: Complexity of Rhythm and Key Finding (2001) (89)
Probabilistic analysis of gene expression measurements from heterogeneous tissues (2010) (88)
Biocellion: accelerating computer simulation of multicellular biological system models (2014) (88)
Pathway alterations during glioma progression revealed by reverse phase protein lysate arrays (2006) (87)
Genomic Signal Processing and Statistics (2005) (87)
An expanded universe of cancer targets (2021) (86)
Insulin-like growth factor binding protein 2 promotes ovarian cancer cell invasion (2005) (85)
In silico microdissection of microarray data from heterogeneous cell populations (2005) (84)
Basin entropy in Boolean network ensembles. (2007) (83)
Computational and Statistical Approaches to Genomics (2007) (78)
Measures of Temporal Pattern Complexity (2000) (78)
Genome-wide histone acetylation data improve prediction of mammalian transcription factor binding sites (2010) (74)
Epigenetic profiling for the molecular classification of metastatic brain tumors (2018) (73)
Biochemical and statistical network models for systems biology. (2007) (70)
Literature-based discovery of new candidates for drug repurposing (2016) (68)
Differing clinical impact of BRCA1 and BRCA2 mutations in serous ovarian cancer. (2012) (65)
Microarray reveals differences in both tumors and vascular specific gene expression in de novo CD5+ and CD5- diffuse large B-cell lymphomas. (2003) (65)
High-throughput tracking of single yeast cells in a microfluidic imaging matrix. (2011) (64)
Biological Information as Set-Based Complexity (2010) (58)
Association of BRCA 1 and BRCA 2 Mutations With Survival , Chemotherapy Sensitivity , and Gene Mutator Phenotype in Patients With Ovarian Cancer (2011) (57)
Probabilistic Inference of Transcription Factor Binding from Multiple Data Sources (2008) (56)
Robust regression for periodicity detection in non-uniformly sampled time-course gene expression data (2007) (55)
Kernel density estimation with adaptive varying window size (2002) (53)
Erratum: The somatic genomic landscape of glioblastoma (Cell (2013) 155 (462-477)) (2014) (49)
Learning the structure of dynamic Bayesian networks from time series and steady state measurements (2008) (49)
INFERENCE OF GENETIC REGULATORY NETWORKS UNDER THE BEST-FIT EXTENSION PARADIGM (2001) (48)
Localized Key Finding: Algorithms and Applications (2000) (46)
The Innate Immune Database (IIDB) (2008) (46)
Deterministic and stochastic models of genetic regulatory networks. (2009) (45)
Robust estimation of protein expression ratios with lysate microarray technology (2005) (44)
Genomic and molecular characterization of preterm birth (2019) (43)
Logic models to predict continuous outputs based on binary inputs with an application to personalized cancer therapy (2016) (43)
Microarray quality control (2004) (42)
A system for machine recognition of music patterns (1998) (42)
The ISB Cancer Genomics Cloud: A Flexible Cloud-Based Platform for Cancer Genomics Research. (2017) (41)
Using cell fate attractors to uncover transcriptional regulation of HL60 neutrophil differentiation (2009) (41)
Sex differences in oncogenic mutational processes (2019) (41)
Tumor specific gene expression profiles in human leiomyosarcoma (2002) (40)
Mappings between probabilistic Boolean networks (2003) (39)
The Role of Redundancy in the Robustness of Random Boolean Networks (2005) (38)
Age-dependent signature of metallothionein expression in primary CD4 T cell responses is due to sustained zinc signaling. (2008) (37)
A CRISPR/Cas9-engineered ARID1A-deficient human gastric cancer organoid model reveals essential and non-essential modes of oncogenic transformation. (2021) (34)
Multiscale Representation of Genomic Signals (2014) (33)
Inference of Genetic Regulatory Networks via Best-Fit Extensions (2003) (32)
Association of Somatic Mutations of ADAMTS Genes With Chemotherapy Sensitivity and Survival in High-Grade Serous Ovarian Carcinoma. (2015) (31)
Systematic measurement of transcription factor-DNA interactions by targeted mass spectrometry identifies candidate gene regulatory proteins (2013) (31)
Genomic Signal Processing: The Salient Issues (2004) (30)
The number and probability of canalizing functions (2003) (29)
Complexity Measures of Musical Rhythms (1998) (28)
ProbCD: enrichment analysis accounting for categorization uncertainty (2007) (27)
CRI iAtlas: an interactive portal for immuno-oncology research (2020) (27)
Entropy of complex relevant components of Boolean networks. (2007) (27)
Spectral design of weighted median filters admitting negative weights (2001) (27)
Noise in a small genetic circuit that undergoes bifurcation (2005) (27)
Key nodes of a microRNA network associated with the integrated mesenchymal subtype of high-grade serous ovarian cancer (2015) (26)
Digital twins for predictive oncology will be a paradigm shift for precision cancer care (2021) (26)
Introduction to the special issue on information theory in molecular biology and neuroscience (2010) (25)
Nonlinear modeling of protein expressions in protein arrays (2006) (25)
Inference of Boolean Networks Using Sensitivity Regularization (2008) (25)
Genome-Wide Analysis of Effectors of Peroxisome Biogenesis (2010) (25)
Mutational Landscapes of Smoking-Related Cancers in Caucasians and African Americans: Precision Oncology Perspectives at Wake Forest Baptist Comprehensive Cancer Center (2017) (24)
Genomic Signal Processing (Princeton Series in Applied Mathematics) (2007) (24)
Identification of copy number variants in whole-genome data using Reference Coverage Profiles (2015) (24)
Stack Filters and Free Distributive Lattices (1995) (23)
Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis (2019) (23)
Adaptable data management for systems biology investigations (2009) (22)
Data extraction from composite oligonucleotide microarrays. (2003) (22)
Distinguishing key biological pathways between primary breast cancers and their lymph node metastases by gene function-based clustering analysis. (2004) (22)
Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (2020) (22)
Identification of signature genes by microarray for acute myeloid leukemia without maturation and acute promyelocytic leukemia with t(15;17)(q22;q12)(PML/RARalpha). (2003) (22)
Systems biology driven software design for the research enterprise (2008) (22)
A multilevel pan-cancer map links gene mutations to cancer hallmarks (2015) (22)
A regression model approach to enable cell morphology correction in high-throughput flow cytometry (2011) (22)
On the Distribution of the Number of Monotone Boolean Functions Relative to the Number of Lower Units (2001) (21)
Microarray Quality Control: Zhang/Microarray Quality Control (2005) (21)
Rhythm complexity measures for music pattern recognition (1998) (21)
Transcriptome and small RNA deep sequencing reveals deregulation of miRNA biogenesis in human glioma (2013) (21)
Gene pair signatures in cell type transcriptomes reveal lineage control (2013) (21)
Nonparametric density estimation with adaptive varying window size (2001) (20)
Block-median pyramidal transform: analysis and denoising applications (2001) (20)
Integrated Analysis of Gene Expression and Tumor Nuclear Image Profiles Associated with Chemotherapy Response in Serous Ovarian Carcinoma (2012) (19)
A new image similarity measure based on ordinal correlation (2000) (18)
Quantitative analysis of colony morphology in yeast. (2014) (18)
On the robustness of the class of stack filters (2002) (17)
On the Limitations of Biological Knowledge (2012) (17)
Discovery of driver non-coding splice-site-creating mutations in cancer (2020) (17)
Spectral methods for testing membership in certain post classes and the class of forcing functions (2004) (17)
Trade-off between Responsiveness and Noise Suppression in Biomolecular System Responses to Environmental Cues (2011) (16)
THE USE OF RECURSIVE MEDIAN FILTERS FOR ESTABLISHING THE TONAL CONTEXT IN MUSIC (1998) (16)
Simcluster: clustering enumeration gene expression data on the simplex space (2007) (16)
Output distributions of recursive stack filters (1999) (15)
Multiscale mutation clustering algorithm identifies pan-cancer mutational clusters associated with pathway-level changes in gene expression (2017) (15)
Almost all monotone Boolean functions are polynomially learnable using membership queries (2001) (15)
Graph-based smoothing of class data with applications in musical key finding (1999) (14)
Establishing the tonal context for musical pattern recognition (1997) (14)
Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle (2016) (13)
Molecular voting for glioma classification reflecting heterogeneity in the continuum of cancer progression. (2005) (13)
The use of sample selection probabilities for stack filter design (2000) (13)
Large-scale molecular characterization and analysis of gastric cancer (2014) (13)
Analysis of angiogenesis using in vitro experiments and stochastic growth models. (2005) (13)
Stability-based cluster analysis applied to microarray data (2003) (12)
Integrated analyses identify a master microrna regulatory network for the mesenchymal subtype in serous ovarian cancer [Cancer Cell 23 (2013) 186-199] (2013) (12)
NCI Imaging Data Commons (2021) (11)
MIIP haploinsufficiency induces chromosomal instability and promotes tumour progression in colorectal cancer (2017) (11)
Extraction of the Number of Peroxisomes in Yeast Cells by Automated Image Analysis (2006) (11)
ADAPTS: Automated deconvolution augmentation of profiles for tissue specific cells (2019) (11)
Introduction to the Issue on Genomic and Proteomic Signal Processing (2008) (10)
A Note on the Pitch Contour Similarity Index (2004) (10)
A K-Means Segmentation Method for Finding 2-D Object Areas Based on 3-D Image Stacks Obtained by Confocal Microscopy (2007) (9)
Increasing Coverage of Transcription Factor Position Weight Matrices through Domain-level Homology (2012) (9)
A framework for ordinal-based image correspondence (2000) (9)
A generalizable data-driven multicellular model of pancreatic ductal adenocarcinoma (2020) (9)
Structure learning for Bayesian networks as models of biological networks. (2013) (9)
Cell death as a trigger for morphogenesis (2018) (9)
Ayesian Automatic Relevance Determination Algorithms for Classifying Gene Expression Data (2002) (9)
Quantification of in vitro cell invasion through image analysis (2004) (9)
Output distributions of stack filters based on mirrored threshold decomposition (2001) (8)
Kinetic Inference Resolves Epigenetic Mechanism of Drug Resistance in Melanoma (2019) (8)
Information-Theoretic Analysis of the Dynamics of an Executable Biological Model (2013) (8)
A Data Integration Framework for Prediction of Transcription Factor Targets (2009) (8)
Iterative block-median pyramid transform-based denoising (1999) (8)
Average Sensitivity of Typical Monotone Boolean Functions (2005) (8)
Properties and applications of monotone Boolean functions and stack filters (1997) (8)
Normalized Compression Distance for Gene Expression Analysis (2005) (8)
Correction of Misclassifications Using a Proximity-Based Estimation Method (2004) (8)
An Integrated Study of Aberrant Gene Copy Number and Gene Expression in GIST and LMS (2010) (8)
Set-based complexity and biological information (2008) (8)
Abstract 5359: Regulatory germline variants in 10,389 adult cancers (2018) (7)
Pathway analysis of informative genes from microarray data reveals that metabolism and signal transduction genes distinguish different subtypes of lymphomas. (2004) (7)
EPEPT: A web service for enhanced P-value estimation in permutation tests (2011) (7)
Image denoising using a block-median pyramid (1999) (7)
Correction: Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics (2008) (7)
Structure-based predictions broadly link transcription factor mutations to gene expression changes in cancers (2014) (6)
Quantization and similarity measure selection for discrimination of lymphoma subtypes under k-nearest neighbor classification (2004) (6)
Breakdown probabilities of recursive stack filters (2001) (6)
Fastbreak: a tool for analysis and visualization of structural variations in genomic data (2012) (6)
Flexibility of Boolean Network Reservoir Computers in Approximating Arbitrary Recursive and Non-Recursive Binary Filters (2018) (6)
Cultivated Meat Modeling Consortium: Inaugural Meeting Whitepaper (2020) (6)
Misclassification correction in primary local recognition of component images of multichannel remote sensing data (2002) (6)
Biological Foundations (2007) (5)
Run-length Distributions of Recursive Median Filters using Probabilistic Automata (1999) (5)
Patient-Specific Cell Communication Networks Associate With Disease Progression in Cancer (2021) (5)
Size and number of examined lymph nodes impacts outcome in patients with stage II colorectal cancer. (2004) (5)
Complexity of the consistency problem for certain Post classes (2001) (4)
2. Structure and Dynamics of Probabilistic Boolean Networks (2010) (4)
Output Distributions of Stack Filters Using Ordered Binary Decision Diagrams (2000) (4)
A TRAINING-BASED OPTIMIZATION FRAMEWORK FOR MISCLASSIFICATION CORRECTION (2000) (4)
Pattern Processing in Music Analysis and Creation (2001) (4)
EFFICIENT REPRESENTATION AND IMPLEMENTATION OF RECURSIVE MEDIAN FILTERS AND THEIR CASCADE COMPOSITIONS (1999) (4)
Correction of misclassifications in primary local image recognition using a nonlinear graph-based estimation technique (2001) (4)
Unsupervised Analysis Uncovers Changes in Histopathologic Diagnosis in Supervised Genomic Studies (2006) (3)
Simplified implementation of the recursive median sieve (2001) (3)
Boolean Modeling of Biological Networks (2009) (3)
Markov Random Field Modeling in Median Pyramidal Transform Domain for Denoising Applications (2001) (3)
POMO - Plotting Omics analysis results for Multiple Organisms (2013) (3)
Model selection in genomics. (2003) (3)
Emergence of diversity in homogeneous coupled Boolean networks. (2018) (3)
ACTIVE LEARNING OF BAYESIAN NETWORK STRUCTURE IN A REALISTIC SETTING (2008) (2)
Epigenetic pro fi ling for the molecular classi fi cation of metastatic brain tumors (2019) (2)
Human Glioma Diagnosis from Gene Expression Data (2003) (2)
CloudForest: A Scalable and Efficient Random Forest Implementation for Biological Data (2015) (2)
An Integration Architecture Designed to Deal with the Issues of Biological Scope, Scale and Complexity (2010) (2)
ADAPTIVE VARYING WINDOW SIZE SELECTION BASED ON INTERSECTION OF CONFIDENCE INTERVALSRULE (2001) (2)
On the Lyapunov Exponent of Monotone Boolean Networks † (2005) (2)
Using Incomplete Trios to Boost Confidence in Family Based Association Studies (2016) (2)
A Case Study on 3-D Reconstruction and Shape Description of Peroxisomes in Yeast (2007) (2)
Synthetic lethal kinases in Ras/p53 mutant squamous cell carcinoma (2022) (2)
On the Structure of Idempotent Monotone Boolean Functions (1998) (2)
A tree of median pyramidal decompositions with an application to signal denoising (2000) (2)
A METHOD FOR CALCULATING BREAKDOWN PROBABILITIES OF RECURSIVE STACK FILTERS BASED ON MARKOV CHAIN MODELS (1999) (2)
Correction: Uncovering a Macrophage Transcriptional Program by Integrating Evidence from Motif Scanning and Expression Dynamics (2008) (2)
Taming data. (2008) (2)
GENERALIZED MALLOWS ’ OPTIMIZATION FOR WEIGHTED MEDIAN FILTERS ADMITTING NEGATIVE WEIGHTS (2001) (1)
SEQADAPT: an adaptable system for the tracking, storage and analysis of high throughput sequencing experiments (2010) (1)
Guest Editorial Genomic Signal Processing (2006) (1)
Optimization of stack filters using sample selection probabilities (1999) (1)
Generation of idempotent monotone Boolean functions (1998) (1)
Correction to "output distributionsof stack filters based on mirrored threshold decomposition" (2001) (1)
Mapping dynamical states to structural classes for Boolean networks using a classification algorithm (2015) (1)
OPTIMIZATION OF EDGE DETECTORS FOR TOPOGRAPHIC MAPS OF CAVE INSCRIPTIONS (2001) (1)
The study of complex fluctuations in Boolean networks (2011) (1)
Reduction factors in finite automata with application to nonlinear filters (2000) (1)
6. Asynchronous Networks (2010) (1)
ASYMPTOTIC ANALYSIS OF EXPECTED RUN-LENGTHS OF RECURSIVE MEDIAN FILTERS (1999) (1)
Probabilistic Framework for Transcription Factor Binding Prediction (2007) (1)
Inferred table of regulation. (2008) (1)
POMO - Plotting Omics analysis results for Multiple Organisms (2013) (1)
Genetic Regulatory Networks: A Nonlinear Signal Processing Perspective (2003) (1)
Block-Median Pyramidal Transform: Analysis and (2001) (1)
Author Correction: Pan-cancer analysis of whole genomes (2023) (1)
Exploring approaches for predictive cancer patient digital twins: Opportunities for collaboration and innovation (2022) (1)
3. Inference of Model Structure (2010) (1)
Automated Quantification of Lymph Node Size and Number in Surgical Specimens of Stage II Colorectal Cancer (2005) (1)
CAFCW 113 Digital Twins for Predictive Cancer Care: an HPC-Enabled Community Initiative (2019) (1)
SL-Cloud: A Computational Resource to Support Synthetic Lethal Interaction Discovery (2021) (0)
Chapter Five. Regularization (2007) (0)
Inferring Dynamic Signalling Networks from Steady State Measurements (2007) (0)
1. Boolean Networks (2010) (0)
Integrated genomic characterization of oesophageal carcinoma (2017) (0)
Editorial (2001) (0)
Author Correction: Patterns of somatic structural variation in human cancer genomes (2020) (0)
Incorporating spatial information of heterogeneous cell populations into Bayesian mRNA- and miRNA-expression analysis (2009) (0)
2009 IEEE International Workshop on Genomic Signal Processing and Statistics, GENSiPS 2009, Minneapolis, MN, USA, May 17-21, 2009 (2009) (0)
Microarray Production: Quality of DNA and Printing (2005) (0)
Using image processing to determine the spatial dynamics of proteins and RNAs in single cells (2010) (0)
Abstract 2362: Comprehensive portrait of canonical and non-canonical splicing in cancer (2018) (0)
Single-Nucleotide Polymorphisms, DNA Repair, and Cancer (2003) (0)
Chapter Two. Deterministic Models of Gene Networks (2007) (0)
Quality Control in Data Analysis (2005) (0)
Abstract A37: Cross-cancer evaluation of MYC synthetic lethal targets in The Cancer Genome Atlas (2013) (0)
Epigenetic profiling for the molecular classification of metastatic brain tumors (2018) (0)
Title: Intricate genetic programs controlling dormancy in Mycobacterium tuberculosis Authors: (2019) (0)
271 Data integration and graph analysis for cancer genomics and drug discovery (2014) (0)
Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (2020) (0)
Abstract 4048: Histological image profiling identifies aggressive glioblastoma phenotype with poorer survival (2011) (0)
Book review (2004) (0)
Quality of Microarray Hybridization (2005) (0)
Abstract B051: Facilitating translational research with interactive tools for immuno-oncology data (2019) (0)
Author Correction: Inferring structural variant cancer cell fraction (2022) (0)
Driver Fusions and Their I mplications in the Development and Treatment of Human Cancers Graphical (2018) (0)
SL-Cloud: A Cloud-based resource to support synthetic lethal interaction discovery. (2022) (0)
Howdah - A Flexible Pipeline Framework for Analyzing Genomic Data (2010) (0)
Chapter Three. Stochastic Models of Gene Networks (2007) (0)
4. Structural Intervention (2010) (0)
Abstract 2017: Key pathways that are altered at both gene copy number and transcript levels in ovarian cancer: An integrated analysis of TCGA data (2010) (0)
Multicellular Reservoir Computing (2022) (0)
Chapter 17 SINGLE-NUCLEOTIDE POLYMORPHISMS , DNA REPAIR , AND CANCER (0)
Abstract 2008: An investigation of the regulation of cellular processes in glioblastoma multiforme via integrated analysis of paired microRNA and gene expression profiles (2010) (0)
Quality of Biological Samples (2005) (0)
Characterizing the Impact of Communication on Cellular and Collective Behavior Using a Three-Dimensional Multiscale Cellular Model (2023) (0)
927 Streamlining cancer immunotherapy research with the CRI iAtlas data resource and web portal (2022) (0)
Combination of transform based denoising and stack filtering for non-Gaussian noise suppression (1999) (0)
Bioinformatic approaches and computational models for data integration and cross-species extrapolation in the postgenomic era (2006) (0)
Probabilistic boolean networks predict transcription factor targets to induce transdifferentiation (2022) (0)
Model Selection in Genomics. (Editorials) (2003) (0)
Ip5 Title Not Available at Time of Publication (0)
On the constraint of gene regulatory networks to canalizing functions and post classes (2008) (0)
Chapter One. Biological Foundations (2007) (0)
Reliable learning using post classes (2000) (0)
Author Correction: The evolutionary history of 2,658 cancers (2023) (0)
5. External Control (2010) (0)
Structure-Dynamics Relationships in Biological Networks (2011) (0)
Steen Knudsen, Guide to Analysis of DNA Microarray Data (Second Edition), Wiley-Liss (2004) ISBN 0471656046, p. 168 pp. $37.95. (2004) (0)
About the Authors (2012) (0)
STREAMLINING CANCER IMMUNOTHERAPY RESEARCH WITH THE CRI IATLAS DATA RESOURCE AND WEB (2022) (0)
A functional module states framework reveals transcriptional states for drug and target prediction. (2022) (0)
Dynamical systems analysis of stack filters (2009) (0)
SL-Cloud: A Cloud-based resource to support synthetic lethal interaction discovery (2022) (0)
Scanners and Data Acquisition (2005) (0)
LIVE CELL IMAGING AND AUTOMATED LINEAGE TRACKING OF YEAST IN A HIGH-THROUGHPUT MICROFLUIDIC DEVICE (2011) (0)
Integrated Views into Cancer Regulomes Reveal Regulatory Hot Spots (2011) (0)
Abstract 1184: Comprehensive analysis with interactive exploration of immune response signatures in 10,000 tumor samples (2019) (0)
Intricate Genetic Programs Controlling Dormancy in Mycobacterium tuberculosis (2021) (0)
RF-ACE for uncovering nonlinear associations from heterogeneous cancer data (2011) (0)
Evolution of biomarker research in autoimmunity conditions for health professionals and clinical practice. (2022) (0)
Computational capabilities of a multicellular reservoir computing system (2023) (0)
CELL-TYPE SPECIFIC MECHANISTIC AND DIRECTIONAL TRANSCRIPTIONAL REGULATORY NETWORKS IN ALZHEIMER’S DISEASE (2019) (0)
An inhibition-based stochastic countable-time decision model. (2002) (0)
Chapter Four. Classification (2007) (0)
Editorial (2002) (0)
Microfluidic High-Throughput Imaging and Automated Lineage Tracking of Yeast (2010) (0)
Statistics of stack filters with mirrored threshold decomposition (2000) (0)
Chapter Six. Clustering (2007) (0)
Inferring genetic regulatory interactions from time-collapsed Boolean summary variables (2010) (0)
Chapter 14 HUMAN GLIOMA DIAGNOSIS FROM GENE EXPRESSION DATA (0)
A functional module states framework reveals cell states for drug and target prediction (2020) (0)
Critical Boolean networks require minimal intervention rate (2009) (0)
Correction: Solving the influence maximization problem reveals regulatory organization of the yeast cell cycle (2018) (0)

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What Schools Are Affiliated With Ilya Shmulevich?

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