Ina Koch | Academic Influence

Ina Koch's AcademicInfluence.com Rankings

Ina Koch

Computer Science

#10519

World Rank

#11052

Historical Rank

Machine Learning

#5349

World Rank

#5417

Historical Rank

Artificial Intelligence

#5769

World Rank

#5854

Historical Rank

Database

#8709

World Rank

#9137

Historical Rank

computer-science Degrees

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Computer Science

Ina Koch's Degrees

Masters Computer Science Stanford University
Bachelors Computer Science University of California, Berkeley

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Why Is Ina Koch Influential?

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According to Wikipedia, Ina Koch is a German bioinformatics researcher who holds the Chair of Molecular Bioinformatics at Goethe University Frankfurt, in the faculty of mathematics and computer science. She has published research on the use of maximum common subgraphs and Petri nets to model problems in biology, and on the prediction of deleterious alleles.

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Ina Koch's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1 (2021) (811)
Enumerating all connected maximal common subgraphs in two graphs (2001) (249)
Complexome profiling identifies TMEM126B as a component of the mitochondrial complex I assembly complex. (2012) (245)
Exploring the pathway structure of metabolism: decomposition into subnetworks and application to Mycoplasma pneumoniae (2002) (230)
Application of Petri net based analysis techniques to signal transduction pathways (2006) (209)
Application of Petri net theory for modelling and validation of the sucrose breakdown pathway in the potato tuber (2005) (155)
An Algorithm for Finding Maximal Common Subtopologies in a Set of Protein Structures (1996) (137)
Model Validation of Biological Pathways Using Petri Nets - Demonstrated for Apoptosis (2003) (131)
Steady state analysis of metabolic pathways using Petri nets (2003) (131)
Modeling in Systems Biology, The Petri Net Approach (2010) (127)
Petri Net Based Model Validation in Systems Biology (2004) (108)
Modularization of biochemical networks based on classification of Petri net t-invariants (2008) (94)
Petri net modelling of gene regulation of the Duchenne muscular dystrophy (2008) (79)
Model validation of biological pathways using Petri nets (2004) (68)
An analysis of the Petri net based model of the human body iron homeostasis process (2007) (65)
NOVA: a software to analyze complexome profiling data (2015) (64)
omiRas: a Web server for differential expression analysis of miRNAs derived from small RNA-Seq data (2013) (63)
Time Petri Nets for Modelling and Analysis of Biochemical Networks (2005) (58)
Columba: an integrated database of proteins, structures, and annotations (2005) (57)
Analysis of protein sheet topologies by graph theoretical methods (1992) (56)
Petri nets in systems biology (2015) (55)
QuateXelero: An Accelerated Exact Network Motif Detection Algorithm (2013) (54)
Genome Scale Modeling in Systems Biology: Algorithms and Resources (2014) (40)
JProGO: a novel tool for the functional interpretation of prokaryotic microarray data using Gene Ontology information (2006) (35)
Knowledge-based prediction of protein structures. (1990) (34)
Modeling of the U1 snRNP assembly pathway in alternative splicing in human cells using Petri nets (2009) (32)
A review of bioinformatics education in Germany (2008) (31)
A Genome-Wide Longitudinal Transcriptome Analysis of the Aging Model Podospora anserine (2013) (29)
Columba: Multidimensional Data Integration of Protein Annotations (2004) (26)
Comparison of machine learning algorithms to predict clinically significant prostate cancer of the peripheral zone with multiparametric MRI using clinical assessment categories and radiomic features (2020) (25)
MonaLisa - visualization and analysis of functional modules in biochemical networks (2013) (25)
MONALISA for stochastic simulations of Petri net models of biochemical systems (2015) (23)
Petri Nets – A Mathematical Formalism to Analyze Chemical Reaction Networks (2010) (23)
In Silico Knockout Studies of Xenophagic Capturing of Salmonella (2016) (22)
Structural Analysis of Metabolic Networks: Elementary Flux Modes, Analogy to Petri Nets, and Application to Mycoplasma Pneumoniae (2000) (21)
Detection of Distant Structural Similarities in a Set of Proteins Using a Fast Graph-Based Method (1997) (20)
APP Is a Context-Sensitive Regulator of the Hippocampal Presynaptic Active Zone (2016) (20)
STEPP - Search Tool for Exploration of Petri net Paths: A new tool for Petri net-based path analysis in biochemical networks (2004) (19)
Optimizing the dynamics of protein expression (2019) (19)
Exhaustive Analysis of the Modular Structure of the Spliceosomal Assembly Network: A Petri Net Approach (2010) (18)
Image database analysis of Hodgkin lymphoma (2013) (17)
PTGL - a web-based database application for protein topologies (2004) (16)
Reduction techniques for network validation in systems biology. (2012) (16)
Impact of rescanning and repositioning on radiomic features employing a multi-object phantom in magnetic resonance imaging (2021) (15)
Simulation and analysis of metabolic networks by time-dependent Petri nets (1999) (15)
Quantitative genome-wide association study of six phenotypic subdomains identifies novel genome-wide significant variants in autism spectrum disorder (2020) (14)
PTGL: a database for secondary structure-based protein topologies (2009) (13)
CD30 cell graphs of Hodgkin lymphoma are not scale-free - an image analysis approach (2015) (12)
APP Deletion Accounts for Age-Dependent Changes in the Bioenergetic Metabolism and in Hyperphosphorylated CaMKII at Stimulated Hippocampal Presynaptic Active Zones (2017) (11)
On Functional Module Detection in Metabolic Networks (2013) (10)
Modelling and Analysis of Biochemical Networks with Time Petri Nets (2004) (10)
Modeling the Metabolism of Arabidopsis thaliana: Application of Network Decomposition and Network Reduction in the Context of Petri Nets (2017) (10)
Manatee invariants reveal functional pathways in signaling networks (2017) (9)
Path2PPI: an R package to predict protein–protein interaction networks for a set of proteins (2016) (9)
Quasi-Steady-State Analysis based on Structural Modules and Timed Petri Net Predict System’s Dynamics: The Life Cycle of the Insulin Receptor (2015) (9)
Unsupervised image segmentation for microarray spots with irregular contours and inner holes (2015) (7)
PTGL - Protein Topology Graph Library (2003) (7)
Correction: A Genome-Wide Longitudinal Transcriptome Analysis of the Aging Model Podospora anserina (2013) (7)
Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma (2020) (7)
Petri Nets and GRN Models (2010) (7)
The autophagy interaction network of the aging model Podospora anserina (2017) (6)
3D investigation shows walls and wall-like structures around human germinal centres, probably regulating T- and B-cell entry and exit (2020) (6)
Applying machine learning methods for finding significant amino acid properties in proteins (1992) (6)
Common functional variants of the glutamatergic system in Autism spectrum disorder with high and low intellectual abilities (2018) (6)
Erratum to: MONALISA for stochastic simulations of Petri net models of biochemical systems (2015) (6)
isiKnock: in silico knockouts in signaling pathways (2018) (5)
Computation and Visualization of Protein Topology Graphs Including Ligand Information (2012) (5)
Automated Image Analysis of Hodgkin lymphoma (2012) (5)
Protein super-secondary structure and quaternary structure topology: theoretical description and application. (2018) (5)
Petri nets for steady state analysis of metabolic systems. (2011) (5)
The new protein topology graph library web server (2016) (4)
The outer membrane Omp85-like protein P39 influences metabolic homeostasis in mature Arabidopsis thaliana. (2018) (4)
Discrete Modelling: Petri Net and Logical Approaches (2010) (4)
Hypothesis: Local variations in the speed of individual DNA replication forks determine the phenotype of daughter cells (2017) (4)
Qualitative modelling and analysis of biochemical pathways with petri nets (2004) (4)
The canonical and non-canonical NF-κB pathways and their crosstalk: A comparative study based on Petri nets (2021) (4)
Mapping the genetics of neuropsychological traits to the molecular network of the human brain using a data integrative approach (2018) (3)
HAUCA Curves for the Evaluation of Biomarker Pilot Studies with Small Sample Sizes and Large Numbers of Features (2016) (3)
STEPP--Search Tool for Exploration of Petri net Paths: a new tool for Petri net-based path analysis in biochemical networks. (2005) (3)
CD30 cell graphs of Hodgkin lymphoma are not scale-free—an image analysis approach (2016) (2)
Petri Nets in Systems Biology: Transition Invariants, Maximal Common Transition Sets, Transition Clusters, Mauritius Maps, and MonaLisa (2019) (2)
Detection of follicular regions in actin-stained whole slide images of the human lymph node by shock filter (2020) (2)
Prediction and analysis of redox-sensitive cysteines using machine learning and statistical methods (2021) (2)
isiKnock: in silico knockouts in biochemical pathways (2018) (2)
Mathematical modeling of the molecular switch of TNFR1-mediated signaling pathways applying Petri net formalism and in silico knockout analysis (2022) (2)
PTGL: extension to graph-based topologies of cryo-EM data for large protein structures (2020) (2)
Modelling and Analysis of Biochemical Networks with Time Petri Nets Extended Abstract (2004) (1)
Cluster analysis and visualization techniques for large datasets in complexome profiling (2015) (1)
Quantitative Analysis (2016) (1)
Petri Nets in the Biosciences (2014) (1)
Computation and visualization of protein topology graphs including ligands (2013) (1)
Hierarchical representation of supersecondary structures using a graph-theoretical approach. (2013) (1)
Mathematical modeling of the molecular switch of TNFR1-mediated signaling pathways using Petri nets (2021) (1)
Spatial distribution of cells in Hodgkin Lymphoma (2013) (0)
T8. GLUTAMATERGIC SIGNALLING AND AUTISM: A FAMILY BASED ASSOCIATION STUDY ON THE GLUTAMATERGIC NEUROTRANSMITTER SYSTEM (2017) (0)
Reconstruction of Protein-Protein Interaction Networks Using Homology-Based Search: Application to the Autophagy Pathway of Aging in Podospora anserina (2020) (0)
OPTIMISATION DE CODON (2018) (0)
Identification of new assembly factors of complex I by complexome profiling (2012) (0)
The Protein Topology Graph Library web server (2016) (0)
Discrete annuities using truncate stochastic interest rates: the case of a Vasicek and Ho-Lee model (2005) (0)
Green Protein Interaction Wheel (2020) (0)
Bioinformatics analysis quantifies neighborhood preferences of cancer cells in Hodgkin lymphoma (2017) (0)
The Right Word in the Right Place? Using an evolutionary model to link codon usage bias to an organism’s fitness. (2014) (0)
M14 SPECIFIC ASD PHENOTYPES ARE MODULATED BY DISTINCT GENETIC VARIANTS CONVERGING AT NETWORK LEVEL (2017) (0)
Example for the application of JProGO for a microarray dataset from () that investigates the influen (2011) (0)
Comparison of protein topology graphs using graphlet-based methods (2013) (0)
Lymph Node Landscapes (2020) (0)
Protein Fold Classification using Graph Neural Network and Protein Topology Graph (2022) (0)
Publisher Correction: Optimizing the dynamics of protein expression (2020) (0)
Modelling large protein structures as graphs for automated analysis of their topology (2021) (0)
Optimizing the dynamics of protein expression (2019) (0)
Bioimage informatics CD 30 cell graphs of Hodgkin lymphoma are not scale-free — an image analysis approach (2015) (0)
Computation and Visualization of Protein Ligand Graphs (2013) (0)
Columba - A Database of Annotations of Protein Structure (2003) (0)
Exhaustive analysis of the modular structure of the spliceosomal assembly network: a petri net approach. (2011) (0)
MONALISA for stochastic simulations of Petri net models of biochemical systems (2015) (0)
Interacting Spider Webs (2020) (0)
Japet: an integrated Tool for recreating KEGG data into hierarchical and Petri net analysis (2004) (0)
Computational modeling of signal transduction networks kinetic parameters - Petri net approaches. (2023) (0)
Extension of protein topologies by ligand information: computation and visualization (2013) (0)
Petri nets in systems biology (2014) (0)
Petri nets and GRN Models In Computational Methodologies in Gene Regulatory Networks. (2009) (0)
Potential of High Dimensional Radiomic Features to Assess Flowing Blood Components in Non-contrast CT Scans (2021) (0)

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