Ioannis Xenarios
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Swiss bioinformatician
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Bioinformatics
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Computational Biology
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Biology
Ioannis Xenarios's Degrees
- PhD Bioinformatics University of Geneva
- Masters Bioinformatics University of Geneva
- Bachelors Biology University of Geneva
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(Suggest an Edit or Addition)Ioannis Xenarios's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- UniProt: A hub for protein information (2015) (2447)
- ProteomeXchange provides globally co-ordinated proteomics data submission and dissemination (2014) (2398)
- Activities at the Universal Protein Resource (UniProt) (2013) (1821)
- UniProt: the universal protein knowledgebase (2016) (1805)
- DIP, the Database of Interacting Proteins: a research tool for studying cellular networks of protein interactions (2002) (1731)
- ExPASy: SIB bioinformatics resource portal (2012) (1669)
- DIP: The Database of Interacting Proteins: 2001 update (2001) (1344)
- InterPro in 2017—beyond protein family and domain annotations (2016) (1217)
- The InterPro protein families database: the classification resource after 15 years (2014) (1186)
- New and continuing developments at PROSITE (2012) (1166)
- DIP: the Database of Interacting Proteins (2000) (1146)
- T-Coffee: a web server for the multiple sequence alignment of protein and RNA sequences using structural information and homology extension (2011) (946)
- The Universal Protein Resource (UniProt) in 2010 (2010) (830)
- Protein function in the post-genomic era (2000) (743)
- The HUPO PSI's Molecular Interaction format—a community standard for the representation of protein interaction data (2004) (672)
- Ongoing and future developments at the Universal Protein Resource (2010) (660)
- Protein Interactions (2002) (584)
- UniProtKB/Swiss-Prot, the Manually Annotated Section of the UniProt KnowledgeBase: How to Use the Entry View. (2016) (562)
- Gene Ontology Annotations and Resources (2012) (503)
- Microarray Deacetylation Maps Determine Genome-Wide Functions for Yeast Histone Deacetylases (2002) (500)
- Phytochrome interacting factors 4 and 5 control seedling growth in changing light conditions by directly controlling auxin signaling. (2012) (490)
- Protein interaction data curation: the International Molecular Exchange (IMEx) consortium (2012) (477)
- The Gene Ontology in 2010: extensions and refinements (2009) (449)
- Toward interoperable bioscience data (2012) (388)
- Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma (2011) (386)
- The UniProt-GO Annotation database in 2011 (2011) (372)
- The genome of the fire ant Solenopsis invicta (2011) (352)
- MorphoGraphX: A platform for quantifying morphogenesis in 4D (2015) (349)
- Complement facilitates early prion pathogenesis (2001) (345)
- Gene expression across mammalian organ development (2019) (344)
- Mining literature for protein-protein interactions (2001) (338)
- IL-4 Rapidly Produced by Vβ4 Vα8 CD4+ T Cells Instructs Th2 Development and Susceptibility to Leishmania major in BALB/c Mice (1997) (321)
- ViralZone: a knowledge resource to understand virus diversity (2010) (314)
- Broadening the horizon – level 2.5 of the HUPO-PSI format for molecular interactions (2007) (280)
- The minimum information required for reporting a molecular interaction experiment (MIMIx) (2007) (279)
- Synchronous versus asynchronous modeling of gene regulatory networks (2008) (276)
- Characterization of the Human ABCG1 Gene (2001) (275)
- Proteomic Analysis of the Mouse Liver Mitochondrial Inner Membrane* (2003) (263)
- Personalized cancer vaccine effectively mobilizes antitumor T cell immunity in ovarian cancer (2018) (251)
- Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins. (2001) (247)
- Genome-wide profiling of the cardiac transcriptome after myocardial infarction identifies novel heart-specific long non-coding RNAs (2014) (246)
- A method for the generation of standardized qualitative dynamical systems of regulatory networks (2006) (238)
- Localizing proteins in the cell from their phylogenetic profiles. (2000) (231)
- The Gene Ontology: enhancements for 2011 (2011) (211)
- Key Parameters of Tumor Epitope Immunogenicity Revealed Through a Consortium Approach Improve Neoantigen Prediction (2020) (194)
- Type I interferons protect T cells against NK cell attack mediated by the activating receptor NCR1. (2014) (191)
- Standardized benchmarking in the quest for orthologs (2016) (184)
- Standardized benchmarking in the quest for orthologs (2016) (184)
- The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein data. (2012) (157)
- Dynamic simulation of regulatory networks using SQUAD (2007) (155)
- Activities at the Universal Protein Resource (UniProt) (2014) (144)
- Plasma Dihydroceramides Are Diabetes Susceptibility Biomarker Candidates in Mice and Humans. (2017) (143)
- Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes (2019) (142)
- SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools (2013) (138)
- Neutrophils and Snail Orchestrate the Establishment of a Pro-tumor Microenvironment in Lung Cancer. (2017) (132)
- Quantifying ChIP-seq data: a spiking method providing an internal reference for sample-to-sample normalization (2014) (127)
- CDK9 regulates AR promoter selectivity and cell growth through serine 81 phosphorylation. (2010) (127)
- Improving the sensitivity of the sequence profile method (1994) (120)
- Protein interaction databases. (2001) (117)
- Systems biology of the IMIDIA biobank from organ donors and pancreatectomised patients defines a novel transcriptomic signature of islets from individuals with type 2 diabetes (2017) (114)
- IL-4 rapidly produced by V beta 4 V alpha 8 CD4+ T cells instructs Th2 development and susceptibility to Leishmania major in BALB/c mice. (1997) (114)
- HAMAP in 2015: updates to the protein family classification and annotation system (2014) (112)
- FastEpistasis: a high performance computing solution for quantitative trait epistasis (2010) (110)
- The mzTab Data Exchange Format: Communicating Mass-spectrometry-based Proteomics and Metabolomics Experimental Results to a Wider Audience* (2014) (108)
- Neighbor Detection Induces Organ-Specific Transcriptomes, Revealing Patterns Underlying Hypocotyl-Specific Growth[OPEN] (2016) (105)
- UniPathway: a resource for the exploration and annotation of metabolic pathways (2011) (102)
- Soil fungal communities of grasslands are environmentally structured at a regional scale in the Alps (2014) (100)
- Sensitive and frequent identification of high avidity neo-epitope specific CD8+ T cells in immunotherapy-naive ovarian cancer (2018) (100)
- Probabilistic base calling of Solexa sequencing data (2008) (97)
- Low number of fixed somatic mutations in a long-lived oak tree (2017) (94)
- Rhea—a manually curated resource of biochemical reactions (2011) (88)
- An Efficient Method for Dynamic Analysis of Gene Regulatory Networks and in silico Gene Perturbation Experiments (2007) (88)
- The SwissLipids knowledgebase for lipid biology (2015) (87)
- Guidelines for reporting the use of mass spectrometry in proteomics (2008) (87)
- Hard-wired heterogeneity in blood stem cells revealed using a dynamic regulatory network model (2013) (86)
- Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome* (2018) (81)
- HAMAP in 2013, new developments in the protein family classification and annotation system (2012) (76)
- Differentially Phased Leaf Growth and Movements in Arabidopsis Depend on Coordinated Circadian and Light Regulation[W] (2014) (76)
- Microarray analysis of isolated human islet transcriptome in type 2 diabetes and the role of the ubiquitin–proteasome system in pancreatic beta cell dysfunction (2013) (73)
- Cooperative development of logical modelling standards and tools with CoLoMoTo (2014) (72)
- Measuring the diurnal pattern of leaf hyponasty and growth in Arabidopsis - a novel phenotyping approach using laser scanning. (2012) (72)
- R-Coffee: a web server for accurately aligning noncoding RNA sequences (2008) (70)
- Cell-free DNA testing of an extended range of chromosomal anomalies: clinical experience with 6,388 consecutive cases (2016) (70)
- Reconciliation of metabolites and biochemical reactions for metabolic networks (2012) (68)
- Evolution of the Ferric Reductase Domain (FRD) Superfamily: Modularity, Functional Diversification, and Signature Motifs (2013) (65)
- Evolutionary trajectories of primate genes involved in HIV pathogenesis. (2009) (62)
- Enzyme annotation in UniProtKB using Rhea (2019) (61)
- Biocurators and Biocuration: surveying the 21st century challenges (2012) (61)
- Local auxin production underlies a spatially restricted neighbor-detection response in Arabidopsis (2017) (60)
- Mutations in LONP1, a mitochondrial matrix protease, cause CODAS syndrome (2015) (60)
- Modeling stochasticity and robustness in gene regulatory networks (2009) (59)
- Functional and Evolutionary Analysis of the CASPARIAN STRIP MEMBRANE DOMAIN PROTEIN Family1[C][W] (2014) (56)
- Network-Guided Analysis of Genes with Altered Somatic Copy Number and Gene Expression Reveals Pathways Commonly Perturbed in Metastatic Melanoma (2011) (56)
- A robust second‐generation genome‐wide test for fetal aneuploidy based on shotgun sequencing cell‐free DNA in maternal blood (2013) (52)
- Molecular docking of competitive phosphodiesterase inhibitors. (2002) (51)
- Updates in Rhea: SPARQLing biochemical reaction data (2018) (49)
- Sleep–wake-driven and circadian contributions to daily rhythms in gene expression and chromatin accessibility in the murine cortex (2019) (48)
- Plant species distributions along environmental gradients: do belowground interactions with fungi matter? (2013) (47)
- The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases (2015) (47)
- Genetic Variations and Diseases in UniProtKB/Swiss-Prot: The Ins and Outs of Expert Manual Curation (2014) (47)
- Genome-Wide Analysis of SREBP1 Activity around the Clock Reveals Its Combined Dependency on Nutrient and Circadian Signals (2014) (46)
- ViralZone: recent updates to the virus knowledge resource (2012) (46)
- TBC1D7 Mutations are Associated with Intellectual Disability, Macrocrania, Patellar Dislocation, and Celiac Disease (2014) (45)
- Conceptual framework and pilot study to benchmark phylogenomic databases based on reference gene trees (2011) (45)
- Drug Design Workshop: A Web-Based Educational Tool To Introduce Computer-Aided Drug Design to the General Public (2017) (44)
- Deciphering the Dynamic Transcriptional and Post-transcriptional Networks of Macrophages in the Healthy Heart and after Myocardial Injury. (2018) (44)
- A systems genetics resource and analysis of sleep regulation in the mouse (2018) (43)
- Updates in Rhea—a manually curated resource of biochemical reactions (2014) (43)
- A qualitative continuous model of cellular auxin and brassinosteroid signaling and their crosstalk (2011) (41)
- Global mapping of highly pathogenic avian influenza H5N1 and H5Nx clade 2.3.4.4 viruses with spatial cross-validation (2016) (41)
- Toward unrestricted use of public genomic data (2019) (40)
- KIAA1109 Variants Are Associated with a Severe Disorder of Brain Development and Arthrogryposis (2017) (39)
- A Chemical Proteomics Approach to Phosphatidylinositol 3-Kinase Signaling in Macrophages*S (2007) (39)
- Describing Biological Protein Interactions in Terms of Protein States and State Transitions (2002) (39)
- Molecular phenotyping of multiple mouse strains under metabolic challenge uncovers a role for Elovl2 in glucose-induced insulin secretion (2017) (38)
- TIE-2-expressing monocytes are lymphangiogenic and associate specifically with lymphatics of human breast cancer (2015) (38)
- OpenFluDB, a database for human and animal influenza virus (2010) (37)
- TIE-2 expressing monocytes in human cancers (2017) (37)
- Updates in Rhea – an expert curated resource of biochemical reactions (2016) (36)
- TIE-2 and VEGFR Kinase Activities Drive Immunosuppressive Function of TIE-2–Expressing Monocytes in Human Breast Tumors (2013) (36)
- The direct effects of tacrolimus and cyclosporin A on isolated human islets: A functional, survival and gene expression study (2009) (35)
- Substantial deletion overlap among divergent Arabidopsis genomes revealed by intersection of short reads and tiling arrays (2010) (35)
- Scaling up data curation using deep learning: An application to literature triage in genomic variation resources (2018) (33)
- Pressing needs of biomedical text mining in biocuration and beyond: opportunities and challenges (2016) (33)
- Database resources for the tuberculosis community. (2013) (32)
- Identification of a novel PPARβ/δ/miR‐21‐3p axis in UV‐induced skin inflammation (2016) (32)
- Fisetin protects against cardiac cell death through reduction of ROS production and caspases activity (2020) (32)
- Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth (2014) (32)
- Comparative transcriptome profiling of the injured zebrafish and mouse hearts identifies miRNA-dependent repair pathways (2016) (31)
- The EMPRES-i genetic module: a novel tool linking epidemiological outbreak information and genetic characteristics of influenza viruses (2014) (31)
- Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method (2016) (30)
- Analysis of the dynamic co-expression network of heart regeneration in the zebrafish (2016) (30)
- Quantification of the spread of SARS-CoV-2 variant B.1.1.7 in Switzerland (2021) (29)
- SourceData: a semantic platform for curating and searching figures (2016) (29)
- Modeling of Multiple Valued Gene Regulatory Networks (2007) (29)
- Analysis of Stop-Gain and Frameshift Variants in Human Innate Immunity Genes (2014) (29)
- Corrigendum: Protein interaction data curation: the International Molecular Exchange (IMEx) consortium (2012) (28)
- Updates in Rhea – an expert curated resource of biochemical reactions (2016) (28)
- Early peak and rapid decline of SARS-CoV-2 seroprevalence in a Swiss metropolitan region (2020) (28)
- Control of Cognate Sense mRNA Translation by cis-Natural Antisense RNAs1[OPEN] (2019) (26)
- A Clb/Cdk1-mediated regulation of Fkh2 synchronizes CLB expression in the budding yeast cell cycle (2017) (26)
- Human ERK1 Induces Filamentous Growth and Cell Wall Remodeling Pathways in Saccharomyces cerevisiae * (2000) (26)
- Quest for Orthologs Entails Quest for Tree of Life: In Search of the Gene Stream (2015) (25)
- Enhanced metabolite annotation via dynamic retention time prediction: Steroidogenesis alterations as a case study. (2017) (25)
- Improving the quality and workflow of bacterial genome sequencing and analysis: paving the way for a Switzerland-wide molecular epidemiological surveillance platform. (2018) (25)
- HENA, heterogeneous network-based data set for Alzheimer’s disease (2019) (25)
- Systems biology to battle vascular disease. (2010) (23)
- The Human Diabetes Proteome Project (HDPP): From network biology to targets for therapies and prevention (2013) (20)
- Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics (2016) (19)
- Laser capture microdissection of human pancreatic islets reveals novel eQTLs associated with type 2 diabetes (2019) (19)
- MAR‐Mediated transgene integration into permissive chromatin and increased expression by recombination pathway engineering (2016) (19)
- Application of text-mining for updating protein post-translational modification annotation in UniProtKB (2013) (19)
- Animal Toxins: How is Complexity Represented in Databases? (2010) (19)
- New molecular insights into modulation of platelet reactivity in aspirin-treated patients using a network-based approach (2016) (19)
- Immune Response to Mouse Mammary Tumor Virus in Mice Lacking the Alpha/Beta Interferon or the Gamma Interferon Receptor (1998) (19)
- pfsearchV3: a code acceleration and heuristic to search PROSITE profiles (2013) (18)
- Angiogenic Activity of Breast Cancer Patients’ Monocytes Reverted by Combined Use of Systems Modeling and Experimental Approaches (2015) (18)
- Qualitative modeling identifies IL-11 as a novel regulator in maintaining self-renewal in human pluripotent stem cells (2013) (18)
- Detection and identification of plasma proteins that bind GlialCAM using ProteinChip™ Arrays, SELDI‐TOF MS, and nano‐LC MS/MS (2008) (18)
- Density-based hierarchical clustering of pyro-sequences on a large scale—the case of fungal ITS1 (2013) (18)
- Genome‐wide identification of microRNAs regulating the human prion protein (2018) (17)
- MIMAS 3.0 is a Multiomics Information Management and Annotation System (2009) (17)
- Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop (2020) (17)
- A 2D/3D image analysis system to track fluorescently labeled structures in rod-shaped cells: application to measure spindle pole asymmetry during mitosis (2013) (17)
- An Integrated Ontology Resource to Explore and Study Host-Virus Relationships (2014) (16)
- Low rate of somatic mutations in a long-lived oak tree (2017) (15)
- DynaStI: A Dynamic Retention Time Database for Steroidomics (2019) (15)
- Implicit methods for qualitative modeling of gene regulatory networks. (2012) (14)
- Integrative knowledge management to enhance pharmaceutical R&D (2014) (13)
- Visualization and quality assessment of de novo genome assemblies (2011) (13)
- Fifteen years SIB Swiss Institute of Bioinformatics: life science databases, tools and support (2014) (13)
- TRAL: tandem repeat annotation library (2015) (13)
- EuroDia: a beta-cell gene expression resource (2010) (13)
- West syndrome caused by homozygous variant in the evolutionary conserved gene encoding the mitochondrial elongation factor GUF1 (2015) (12)
- Comparison of Strategies to Detect Epistasis from eQTL Data (2011) (12)
- Differential regulation of RNA polymerase III genes during liver regeneration (2018) (10)
- Analysis of S. pombe SIN protein association to the SPB reveals two genetically separable states of the SIN (2015) (10)
- Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion (2020) (10)
- Incorporating heterogeneous sampling probabilities in continuous phylogeographic inference - Application to H5N1 spread in the Mekong region (2019) (10)
- An enhanced workflow for variant interpretation in UniProtKB/Swiss-Prot improves consistency and reuse in ClinVar (2019) (9)
- MsViz: A Graphical Software Tool for In-Depth Manual Validation and Quantitation of Post-translational Modifications. (2017) (9)
- Transcriptional response to cardiac injury in the zebrafish: systematic identification of genes with highly concordant activity across in vivo models (2014) (9)
- Efficient computation of minimal perturbation sets in gene regulatory networks (2013) (9)
- Extensive remodeling of DC function by rapid maturation-induced transcriptional silencing (2014) (8)
- Identification of a novel PPAR beta / delta / miR-21-3 p axis in UV-induced skin inflammation (2018) (8)
- ENFIN--A European network for integrative systems biology. (2009) (8)
- Three-dimensional chromatin interactions remain stable upon CAG/CTG repeat expansion (2019) (8)
- Multiple Imputations Applied to the DREAM3 Phosphoproteomics Challenge: A Winning Strategy (2010) (7)
- The ins and outs of eukaryotic viruses: Knowledge base and ontology of a viral infection (2017) (7)
- An Extended, Boolean Model of the Septation Initiation Network in S.Pombe Provides Insights into Its Regulation (2015) (7)
- Improving HIV proteome annotation: new features of BioAfrica HIV Proteomics Resource (2016) (7)
- A multi-omics digital research object for the genetics of sleep regulation (2019) (7)
- External Quality Assessment of SARS-CoV-2 Sequencing: an ESGMD-SSM Pilot Trial across 15 European Laboratories (2021) (7)
- Unraveling modulators of platelet reactivity in cardiovascular patients using omics strategies: Towards a network biology paradigm (2013) (7)
- Varapp: A reactive web-application for variants filtering (2016) (7)
- The Human Diabetes Proteome Project (HDPP): The 2014 update (2015) (7)
- Virosaurus A Reference to Explore and Capture Virus Genetic Diversity (2020) (6)
- New genome assembly of the barn owl (Tyto alba alba) (2020) (6)
- Expert curation for building network-based dynamical models: a case study on atherosclerotic plaque formation (2018) (6)
- Identifying biological mechanisms for favorable cancer prognosis using non-hypothesis-driven iterative survival analysis (2016) (6)
- AssociationViewer: a scalable and integrated software tool for visualization of large-scale variation data in genomic context (2009) (6)
- Clade-level Spatial Modelling of HPAI H5N1 Dynamics in the Mekong Region Reveals New Patterns and Associations with Agro-Ecological Factors (2016) (6)
- Taxon sampling unequally affects individual nodes in a phylogenetic tree: consequences for model gene tree construction in SwissTree (2017) (5)
- HAMAP as SPARQL rules—A portable annotation pipeline for genomes and proteomes (2020) (5)
- The Microbe browser for comparative genomics (2009) (5)
- Characterization and mutagenesis of Chinese hamster ovary cells endogenous retroviruses to inactivate viral particle release (2019) (5)
- Strengths and Weaknesses of Selected Modeling Methods Used in Systems Biology (2011) (4)
- Unsupervised Analysis of Flow Cytometry Data in a Clinical Setting Captures Cell Diversity and Allows Population Discovery (2021) (4)
- Blood virosphere in febrile Tanzanian children (2020) (4)
- Consent insufficient for data release—Response (2019) (4)
- Modelling approaches in tumor microenvironment. (2018) (4)
- Identification of a novel PPAR b / d / miR-21-3 p axis in UV-induced skin inflammation (2016) (3)
- Continuous population-level monitoring of SARS-CoV-2 seroprevalence in a large European metropolitan region (2023) (3)
- Bacterial Virus Ontology; Coordinating across Databases (2017) (3)
- XSI—a genotype compression tool for compressive genomics in large biobanks (2022) (2)
- Toward a rational design of combination therapy in cancer (2015) (2)
- The Metagenomic Pizza: a simple recipe to introduce bioinformatics to the layman (2016) (2)
- PamgeneAnalyzeR: open and reproducible pipeline for kinase profiling (2020) (2)
- Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency (2022) (2)
- An anti-influenza combined therapy assessed by single cell RNA-sequencing (2022) (2)
- Author response: Global mapping of highly pathogenic avian influenza H5N1 and H5Nx clade 2.3.4.4 viruses with spatial cross-validation (2016) (1)
- Navigating in vitro bioactivity data by investigating available resources using model compounds (2018) (1)
- Transcriptional response to cardiac injury in the zebrafish: systematic identification of genes with highly concordant activity across in vivo models (2014) (1)
- Estimating the Contribution of Proteasomal Spliced Peptides to the HLA-I Ligandome (2018) (1)
- Towards in the Field Fast Pathogens Detection Using FPGAs (2018) (1)
- 6.13 – Databases and Datasources at SIB, Swiss Institute of Bioinformatics (2014) (1)
- Modelling approaches to discovery in the tumor microenvironment (2018) (1)
- Contribution of exome sequencing to the identification of genes involved in the response to clopidogrel in cardiovascular patients (2020) (1)
- PamgeneAnalyzeR open and reproducible pipeline for kinase profiling (2019) (1)
- HENA, heterogeneous network-based data set for Alzheimer’s disease (2019) (1)
- Simple and complex interactions between sleep-wake driven and circadian processes shape daily genome regulatory dynamics in the mouse (2019) (1)
- Efficient method for generating minimal intervention sets in Gene Regulatory Networks (2010) (1)
- Application of text-mining for updating protein post-translational modification annotation in UniProtKB (2013) (1)
- A multi-omics digital research object for the genetics of sleep regulation (2019) (1)
- Navigating in vitro bioactivity data by investigating available resources using model compounds (2019) (1)
- Deciphering the design principles of dynamic cell cycle control (2015) (1)
- Social networks help to infer causality in the tumor microenvironment (2016) (1)
- Prevalence of post-COVID Condition 12 Weeks after Omicron Infection Compared to Negative Controls and Association with Vaccination Status. (2022) (1)
- Quest for Orthologs ( QfO ) entails Quest for Tree of Life ( QfToL ) : in Search of the Gene Stream (2015) (1)
- Sex-Biased Control of Inflammation and Metabolism by a Mitochondrial Nod-Like Receptor (2022) (1)
- A Common Processing and Statistical Framework for Label-Free Quantitative Proteomic Analyses (2009) (0)
- Predicting combinations of immunomodulators to enhance dendritic cell-based vaccination based on a hybrid experimental and computational platform (2020) (0)
- Abstract P6-10-22: miR363-3p mediates maintenance of breast cancer stem cells (BCSCs) and predicts resistance to neoadjuvant chemotherapy and disease recurrence (2020) (0)
- Gene expression across mammalian organ development (2019) (0)
- HAMAP rules as SPARQL A portable annotation pipeline for genomes and proteomes (2019) (0)
- Identification of a RAI1-associated disease network through integration of exome sequencing, transcriptomics, and 3D genomics (2016) (0)
- A 2D/3D image analysis system to track fluorescently labeled structures in rod-shaped cells: application to measure spindle pole asymmetry during mitosis (2013) (0)
- Databases and ontologies The SwissLipids knowledgebase for lipid biology (2015) (0)
- Acceleration of the pfsearch program to search PROSITE generalized profiles (2012) (0)
- Repeat Detector: accurate, efficient, and flexible sizing of expanded CAG/CTG repeats from targeted DNA sequencing (2022) (0)
- PAPET: a collection of performant algorithms to identify 5-methyl cytosine from PacBio SequelII data (2023) (0)
- HAMAP as SPARQL: annotate all your proteins (2019) (0)
- A Clb/Cdk1-mediated regulation of Fkh2 synchronizes CLB expression in the budding yeast cell cycle (2017) (0)
- Fisetin protects against cardiac cell death through reduction of ROS production and caspases activity (2020) (0)
- Repeat Detector: versatile sizing of expanded tandem repeats and identification of interrupted alleles from targeted DNA sequencing (2022) (0)
- Author response: Automated quantitative histology reveals vascular morphodynamics during Arabidopsis hypocotyl secondary growth (2013) (0)
- INTEGRATED MULTI-OMIC ANALYSIS OF A RARE INBORN ERROR OF METABOLISM (2022) (0)
- Original article EuroDia: a beta-cell gene expression resource (2010) (0)
- Predicting the antitumor immune response in individual patients under single and combined checkpoint blockades based on computational models of the tumor microenvironment (2017) (0)
- Sensitive and frequent identification of high avidity neo-epitope specific CD8+ T cells in immunotherapy-naive ovarian cancer (2018) (0)
- Integrated proteogenomic deep sequencing and analytics accurately identify non-canonical peptides in tumor immunopeptidomes (2020) (0)
- Molecular docking of competitive phosphodiesterase inhibitor, 4-[3-(Cyclopentyloxy)-4-methoxyphenyl]-2-pyrrolidinone, Rolipram (2001) (0)
- Modeling and Simulation: the vital role of biocurated models (2014) (0)
- Curation of human protein variants in UniProtKB/Swiss-Prot (2017) (0)
- External Quality Assessment of SARS-CoV-2 Sequencing: an ESGMD-SSM Pilot Trial across 15 European Laboratories External Quality Assessment of SARS-CoV-2 Sequencing: an ESGMD-SSM Pilot Trial across 15 European Laboratories. Journal clinical microbiology (2022) (0)
- New molecular insights into modulation of platelet reactivity in aspirin-treated patients using a network-based approach (2016) (0)
- Author response: MorphoGraphX: A platform for quantifying morphogenesis in 4D (2015) (0)
- PROSITE, a database for domain and site detection and annotation (2016) (0)
- Combining different learning techniques: how e-learning improves classical face-to-face training (2015) (0)
- Molecular docking of competitive phosphodiesterase substrate cyclic adenosine 3',5'-monophosphate (cAMP) (2001) (0)
- An enhanced workflow for variant interpretation in UniProtKB/Swiss-Prot improves consistency and reuse in ClinVar. (2019) (0)
- Human protein variants in UniProtKB/Swiss-Prot: improving access to knowledge through standardized annotations (2016) (0)
- Towards mouse genetic-specific RNA-sequencing read mapping (2021) (0)
- ChromosomeWalk, a virtual exhibition introducing the human genome and bioinformatics (2013) (0)
- Low number of fixed somatic mutations in a long-lived oak tree (2017) (0)
- MICROARRAY ANALYSIS OF TYPE 2 DIABETIC ISOLATED HUMAN ISLETS (2010) (0)
- Generation of Molecular Models and Pathways (2018) (0)
- p rotein interaction data curation: the i nternational m olecular exchange (ime x) consortium (2012) (0)
- Erratum: Characterization of the human ABCG1 gene. Liver X receptor activates an internal promoter that produces a novel transcript encoding an alternative form of the protein (Journal of Biological Chemistry (2001) 276 (39438-39447)) (2002) (0)
- Dissection of the macrophage response towards infection by the Leishmania-viral endosymbiont duo and dynamics of the type I interferon response (2022) (0)
- Front Cover Image, Volume 117, Number 2, February 2020 (2020) (0)
- - 1-Probabilistic base calling of Solexa sequencing data (2008) (0)
- A novel anti-influenza combined therapy assessed by single cell RNA-sequencing (2021) (0)
- Social networks help to infer causality in the tumor microenvironment (2016) (0)
- Reference mouse strain assemblies for BALB/c Nude and NOD/SCID mouse models (2023) (0)
- Transcriptome analysis of human type 2 diabetic islets (2009) (0)
- HumaReC project: digital New Testament and continuous data publishing (2017) (0)
- Control of cognate sense mRNA translation by cis -natural antisense RNAs 3 (2019) (0)
- "Personalized health" : report to discuss options and frame for a new Swiss initiative (2014) (0)
- Boolean regulatory network reconstruction using literature based knowledge with a genetic algorithm optimization method (2016) (0)
- "First steps with": a training course series to launch life scientists on the road towards bioinformatics (2015) (0)
- Cycles of gene expression and genome response during mammalian tissue regeneration (2018) (0)
- Identification of genes with concordant responses in different in vivo models of heart regeneration in zebrafish (2015) (0)
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