Ivan Erill
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Ivan Erillbiology Degrees
Biology
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Microbiology
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Genetics
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Molecular Biology
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Biology
Ivan Erill's Degrees
- PhD Molecular Biology University of Barcelona
- Masters Biochemistry University of Barcelona
- Bachelors Biology University of Barcelona
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Why Is Ivan Erill Influential?
(Suggest an Edit or Addition)According to Wikipedia, Ivan Erill is a Spanish computational biologist known for his research in comparative genomics and molecular microbiology. His work focuses primarily on bacterial comparative genomics, through the development of computational methods for analyzing regulatory networks and their evolution.
Ivan Erill's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- The SOS Response Controls Integron Recombination (2009) (376)
- Aeons of distress: an evolutionary perspective on the bacterial SOS response. (2007) (308)
- Prevalence of SOS-mediated control of integron integrase expression as an adaptive trait of chromosomal and mobile integrons (2011) (110)
- Biochemical analysis and optimization of inhibition and adsorption phenomena in glass–silicon PCR-chips (2003) (108)
- Dispersal and regulation of an adaptive mutagenesis cassette in the bacteria domain (2006) (88)
- In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon (2003) (81)
- CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria (2013) (78)
- Relative Codon Adaptation: A Generic Codon Bias Index for Prediction of Gene Expression (2010) (70)
- Genome-Scale Analyses of Escherichia coli and Salmonella enterica AraC Reveal Noncanonical Targets and an Expanded Core Regulon (2013) (65)
- Widespread distribution of a lexA‐regulated DNA damage‐inducible multiple gene cassette in the Proteobacteria phylum (2004) (65)
- Manufacturing and full characterization of silicon carbide-based multi-sensor micro-probes for biomedical applications (2007) (57)
- ECO, the Evidence & Conclusion Ontology: community standard for evidence information (2018) (55)
- Differences in LexA regulon structure among Proteobacteria through in vivo assisted comparative genomics. (2004) (53)
- Identification and Characterization of VpsR and VpsT Binding Sites in Vibrio cholerae (2015) (50)
- Reconstruction of the evolutionary history of the LexA-binding sequence. (2004) (47)
- Development of a CMOS-compatible PCR chip: comparison of design and system strategies (2004) (46)
- A reexamination of information theory-based methods for DNA-binding site identification (2009) (44)
- Cohabitation of Two Different lexA Regulons in Pseudomonas putida (2007) (38)
- Expression of Canonical SOS Genes Is Not under LexA Repression in Bdellovibrio bacteriovorus (2005) (37)
- Induction of the SOS response by bacteriophage lytic development in Salmonella enterica. (2006) (33)
- Analysis of the SOS response of Vibrio and other bacteria with multiple chromosomes (2012) (32)
- Genomic characterization and comparison of seven Myoviridae bacteriophage infecting Bacillus thuringiensis. (2016) (31)
- Comparative genomics of the DNA damage‐inducible network in the Patescibacteria (2017) (31)
- Origin of the Mobile Di-Hydro-Pteroate Synthase Gene Determining Sulfonamide Resistance in Clinical Isolates (2018) (27)
- A SiC microdevice for the minimally invasive monitoring of ischemia in living tissues (2006) (25)
- A Green Nonsulfur Bacterium, Dehalococcoides ethenogenes, with the LexA Binding Sequence Found in Gram-Positive Organisms (2002) (24)
- Real-time direct measurement of human liver allograft temperature from recovery to transplantation. (2006) (19)
- In vivo detection of liver steatosis in rats based on impedance spectroscopy (2007) (18)
- Identification of the Acidobacterium capsulatum LexA box reveals a lateral acquisition of the Alphaproteobacteria lexA gene. (2006) (17)
- Exploration into the origins and mobilization of di-hydrofolate reductase genes and the emergence of clinical resistance to trimethoprim (2020) (16)
- From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF (2016) (15)
- A Rapid and Reliable Means of Assessing Hepatic Steatosis In Vivo Via Electrical Bioimpedance (2009) (14)
- scnRCA: A Novel Method to Detect Consistent Patterns of Translational Selection in Mutationally-Biased Genomes (2013) (13)
- Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases (2019) (12)
- Comparative Analysis of Ralstonia solanacearum Methylomes (2017) (12)
- A Novel Genus of Actinobacterial Tectiviridae (2019) (11)
- Inference of Self-Regulated Transcriptional Networks by Comparative Genomics (2012) (10)
- Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO) (2021) (9)
- xFITOM: a generic GUI tool to search for transcription factor binding sites (2010) (9)
- BioWord: A sequence manipulation suite for Microsoft Word (2012) (9)
- Conceptualization of the Holobiont Paradigm as It Pertains to Corals (2020) (8)
- An SOS Regulon under Control of a Noncanonical LexA-Binding Motif in the Betaproteobacteria (2015) (8)
- A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data (2016) (8)
- Diagnostic yield of targeted next generation sequencing in various cancer types: an information-theoretic approach. (2015) (8)
- The Verrucomicrobia LexA-Binding Motif: Insights into the Evolutionary Dynamics of the SOS Response (2016) (8)
- Assessment of transfer methods for comparative genomics of regulatory networks in bacteria (2016) (7)
- Genome Sequence of Bacillus cereus Group Phage SalinJah (2016) (7)
- Silicon microsystem passivation for high-voltage applications in DNA chips (2000) (6)
- Characterization of the SOS meta-regulon in the human gut microbiome (2014) (6)
- Complete Genome Sequences of Three phi29-Like Bacillus cereus Group Podoviridae (2017) (5)
- ECO: the Evidence and Conclusion Ontology, an update for 2022 (2021) (5)
- Transcriptional rewiring of the GcrA/CcrM bacterial epigenetic regulatory system in closely related bacteria (2021) (5)
- Non-canonical LexA proteins regulate the SOS response in the Bacteroidetes (2021) (5)
- Parametric bootstrapping for biological sequence motifs (2016) (5)
- Tortoises and hares (2011) (5)
- Informational Requirements for Transcriptional Regulation (2014) (3)
- Complete Genome Sequences of HonestAbe, Anthony, and Taffo16, Three Cluster C Bacillus cereus Group Bacteriophages (2018) (3)
- ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts (2021) (3)
- Evidence for shared ancestry between Actinobacteria and Firmicutes bacteriophages (2019) (3)
- Enhanced copper-resistance gene repertoire in Alteromonas macleodii strains isolated from copper-treated marine coatings (2021) (3)
- Genome Sequences of Two Bacillus cereus Group Bacteriophages, Eyuki and AvesoBmore (2015) (3)
- Every Site Counts: Submitting Transcription Factor-Binding Site Information through the CollecTF Portal (2015) (3)
- Core Regulon Noncanonical Targets and an Expanded and Salmonella enterica AraC Reveal Genome-Scale Analyses of Escherichia coli (2013) (2)
- Aeonsofdistress : an evolutionaryperspective on thebacterial SOS response (2007) (2)
- Complete Genome Sequence of Bacillus cereus Group Phage TsarBomba (2015) (2)
- Complete Genome Sequences of Six BI Cluster Streptomyces Bacteriophages, HotFries, Moozy, Rainydai, RavenPuff, Scap1, and SenditCS (2018) (2)
- Flexible comparative genomics of prokaryotic transcriptional regulatory networks (2020) (2)
- Design of Machine Learning Models for the Prediction of Transcription Factor Binding Regions in Bacterial DNA (2021) (1)
- Bacillus cereus Group Bacteriophage Flapjack Genome Sequence (2017) (1)
- Optimization of Computations Used in Information Theory Applied to Base Pair Analysis Team (2011) (1)
- Information Theory and Biological Sequences: Insights from an Evolutionary Perspective 1. Life as an Information System (2012) (1)
- Simulation of the Evolution of Information Content in Transcription Factor Binding Sites Using a Parallelized Genetic Algorithm (2011) (1)
- MetagenomeRegulatoryAnalysis: Updated working release (2016) (1)
- Systematic In Silico Assessment of Antimicrobial Resistance Dissemination across the Global Plasmidome (2023) (0)
- COLLECTF: a database of experimentally-validated bacterial TF-binding motifs (2013) (0)
- Complete Genome Sequences of Streptomyces Bacteriophages Annihilus, TonyStarch, Thiqqums, CricKo, ClubPenguin, RosaAsantewaa, and PherryCruz (2022) (0)
- Erratum for Erill and Caruso, Complete Genome Sequence of Bacillus cereus Group Phage TsarBomba (2015) (0)
- A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data (2016) (0)
- BioWord: A sequence manipulation suite for Microsoft Word (2012) (0)
- Complete Genome Sequence of the Streptomyces Phage Nanodon (2016) (0)
- Evidence of a Set of Core-Function Genes in 16 Bacillus Podoviral Genomes with Considerable Genomic Diversity (2023) (0)
- Title : Holobiont : is the whole more than the sum of its parts ? (2019) (0)
- Viruses of bacteria: phages evolution across phylum boundaries (2021) (0)
- Direct measurement of core temperature in human liver allografts : implications for clinical and research methodology (2006) (0)
- Elucidation of the Alpha Proteobacteria LexA regulon through an in vivo assisted comparative genomics approach (2004) (0)
- Corpora as Evolving Entities: Embedding Corpora in Biomedical Ontologies (2020) (0)
- High-quality functional genome annotation through an intercampus competition initiative (2016) (0)
- The transcriptional regulator CtrA controls gene expression in Alphaproteobacteria phages: Evidence for a lytic deferment pathway (2022) (0)
- Evidence and Conclusion Ontology: 2019 Update (2019) (0)
- Recurrent mobilization of ancestral and novel variants of the chromosomal di-hydrofolate reductase gene drives the emergence of clinical resistance to trimethoprim (2020) (0)
- Additional file 6 (2012) (0)
- Genome Sequences of Streptomyces Bacteriophages Fabian, FlowerPower, Geostin, RetrieverFever, and Vorvolakos (2022) (0)
- Impedance-based diagnostic of liver steatosis2 (2007) (0)
- Analysis of the SOS response of Vibrio and other bacteria with multiple chromosomes (2012) (0)
- Parametric bootstrapping for biological sequence motifs (2016) (0)
- Complete Genome Sequence of the Streptomyces-Specific Bacteriophage BRock (2020) (0)
- Complete Genome Sequence of Streptomyces Bacteriophage Abt2graduatex2 (2018) (0)
- BioWord: A sequence manipulation suite for (2012) (0)
- Linking Copper-Associated Signal Transduction Systems with Their Environment in Marine Bacteria (2023) (0)
- Assessment of transfer methods for comparative genomics of regulatory networks in bacteria (2016) (0)
- Editorial: Microbiome and microbial informatics (2022) (0)
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