Ivet Bahar
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Computational Biologist
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Biology Physics
Why Is Ivet Bahar Influential?
(Suggest an Edit or Addition)According to Wikipedia, Ivet Bahar is a Turkish-American computational biologist, currently serving as the Director of the Louis and Beatrice Laufer Center for Physical and Quantitative Biology, Louis & Beatrice Laufer Endowed Chair and Professor of Biochemistry and Cell Biology at the Stony Brook University, School of Medicine. Before joining Stony Brook University, she served as Distinguished Professor, John K. Vries Chair and Founder of the Department of Computational and Systems Biology at the University of Pittsburgh School of Medicine , and as Assistant , Associate and Full Professor at the Chemical Engineering Department of Boğaziçi University, Istanbul, Turkey. Dr. Bahar is also the co-founder of an internationally acclaimed Joint CMU-Pitt Ph.D. Program in Computational Biology, CPCB, offered by the University of Pittsburgh and Carnegie Mellon University. She is an elected member of the European Molecular Biology Organization since 2000. She was elected to the National Academy of Sciences in 2020.
Ivet Bahar's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Anisotropy of fluctuation dynamics of proteins with an elastic network model. (2001) (1404)
- Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential. (1997) (1220)
- Oxidized arachidonic and adrenic PEs navigate cells to ferroptosis. (2017) (1139)
- ProDy: Protein Dynamics Inferred from Theory and Experiments (2011) (823)
- Cardiolipin externalization to the outer mitochondrial membrane acts as an elimination signal for mitophagy in neuronal cells (2013) (729)
- Coarse-grained normal mode analysis in structural biology. (2005) (685)
- Gaussian Dynamics of Folded Proteins (1997) (661)
- Global dynamics of proteins: bridging between structure and function. (2010) (512)
- PEBP1 Wardens Ferroptosis by Enabling Lipoxygenase Generation of Lipid Death Signals (2017) (451)
- Normal mode analysis of biomolecular structures: functional mechanisms of membrane proteins. (2010) (438)
- Vibrational Dynamics of Folded Proteins: Significance of Slow and Fast Motions in Relation to Function and Stability (1998) (371)
- Structural changes involved in protein binding correlate with intrinsic motions of proteins in the unbound state. (2005) (359)
- Normal mode analysis : theory and applications to biological and chemical systems (2005) (332)
- Bistability in apoptosis: roles of bax, bcl-2, and mitochondrial permeability transition pores. (2006) (306)
- Anisotropic network model: systematic evaluation and a new web interface (2006) (295)
- Intrinsic dynamics of enzymes in the unbound state and relation to allosteric regulation. (2007) (284)
- Inter-residue potentials in globular proteins and the dominance of highly specific hydrophilic interactions at close separation. (1997) (274)
- Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: Application to α‐amylase inhibitor (2000) (274)
- Global ribosome motions revealed with elastic network model. (2004) (272)
- Structure-derived potentials and protein simulations. (1996) (266)
- Coupling between catalytic site and collective dynamics: a requirement for mechanochemical activity of enzymes. (2005) (247)
- The intrinsic dynamics of enzymes plays a dominant role in determining the structural changes induced upon inhibitor binding (2009) (243)
- Zebrafish chemical screening reveals an inhibitor of Dusp6 that expands cardiac cell lineages (2009) (229)
- Dynamics of large proteins through hierarchical levels of coarse‐grained structures (2002) (217)
- Collective motions in HIV-1 reverse transcriptase: examination of flexibility and enzyme function. (1999) (213)
- Signal Propagation in Proteins and Relation to Equilibrium Fluctuations (2007) (209)
- Redox lipid reprogramming commands susceptibility of macrophages and microglia to ferroptotic death (2020) (198)
- Superantigenic character of an insert unique to SARS-CoV-2 spike supported by skewed TCR repertoire in patients with hyperinflammation (2020) (197)
- Allostery in Its Many Disguises: From Theory to Applications. (2019) (196)
- High‐efficiency bypass of DNA damage by human DNA polymerase Q (2004) (194)
- Allosteric changes in protein structure computed by a simple mechanical model: hemoglobin T<-->R2 transition. (2003) (184)
- Structure and dynamic regulation of Src-family kinases (2008) (174)
- The interface of protein structure, protein biophysics, and molecular evolution (2012) (171)
- Proteins with similar architecture exhibit similar large-scale dynamic behavior. (2000) (166)
- Identification of core amino acids stabilizing rhodopsin. (2004) (163)
- Evol and ProDy for bridging protein sequence evolution and structural dynamics (2014) (163)
- Correlation between native-state hydrogen exchange and cooperative residue fluctuations from a simple model. (1998) (161)
- Molecular mechanisms of chaperonin GroEL-GroES function. (2002) (161)
- Iron catalysis of lipid peroxidation in ferroptosis: Regulated enzymatic or random free radical reaction? (2019) (154)
- Mechanisms of CFTR Functional Variants That Impair Regulated Bicarbonate Permeation and Increase Risk for Pancreatitis but Not for Cystic Fibrosis (2014) (152)
- oGNM: online computation of structural dynamics using the Gaussian Network Model (2006) (152)
- Elastic network models for understanding biomolecular machinery: from enzymes to supramolecular assemblies (2005) (149)
- Relating molecular flexibility to function: a case study of tubulin. (2002) (147)
- Markov propagation of allosteric effects in biomolecular systems: application to GroEL–GroES (2006) (145)
- The anisotropic network model web server at 2015 (ANM 2.0) (2015) (142)
- Conformational changes in HIV-1 reverse transcriptase induced by nonnucleoside reverse transcriptase inhibitor binding. (2004) (139)
- Predicting Drug–Target Interactions Using Probabilistic Matrix Factorization (2013) (137)
- Transition states and the meaning of Φ-values in protein folding kinetics (2001) (136)
- Insights into equilibrium dynamics of proteins from comparison of NMR and X-ray data with computational predictions. (2007) (136)
- Sequence Evolution Correlates with Structural Dynamics (2012) (133)
- Vibrational dynamics of transfer RNAs: comparison of the free and synthetase-bound forms. (1998) (129)
- Understanding the recognition of protein structural classes by amino acid composition (1997) (128)
- Identification of kinetically hot residues in proteins (1998) (127)
- Allosteric Transitions of Supramolecular Systems Explored by Network Models: Application to Chaperonin GroEL (2009) (124)
- Principal component analysis of native ensembles of biomolecular structures (PCA_NEST): insights into functional dynamics (2009) (124)
- iGNM: a database of protein functional motions based on Gaussian Network Model (2005) (120)
- Short‐range conformational energies, secondary structure propensities, and recognition of correct sequence‐structure matches (1997) (119)
- DynOmics: dynamics of structural proteome and beyond (2017) (115)
- Exploring the Conformational Transitions of Biomolecular Systems Using a Simple Two-State Anisotropic Network Model (2014) (111)
- Pseudomonas aeruginosa utilizes host polyunsaturated phosphatidylethanolamines to trigger theft-ferroptosis in bronchial epithelium (2018) (105)
- Interplay between arginine methylation and ubiquitylation regulates KLF4-mediated genome stability and carcinogenesis (2015) (97)
- Structure‐based analysis of protein dynamics: Comparison of theoretical results for hen lysozyme with X‐ray diffraction and NMR relaxation data (1999) (96)
- Empirical solvent‐mediated potentials hold for both intra‐molecular and inter‐molecular inter‐residue interactions (1998) (96)
- Adaptability of protein structures to enable functional interactions and evolutionary implications. (2015) (95)
- Mapping Transcriptomic Vector Fields of Single Cells (2019) (95)
- Time-resolved Mechanism of Extracellular Gate Opening and Substrate Binding in a Glutamate Transporter*S⃞ (2008) (93)
- Coupling between global dynamics and signal transduction pathways: a mechanism of allostery for chaperonin GroEL. (2008) (92)
- Cooperative fluctuations and subunit communication in tryptophan synthase. (1999) (90)
- Frequent mutation of receptor protein tyrosine phosphatases provides a mechanism for STAT3 hyperactivation in head and neck cancer (2014) (90)
- Maturation dynamics of bacteriophage HK97 capsid. (2005) (88)
- Common mechanism of pore opening shared by five different potassium channels. (2006) (88)
- Phospholipase iPLA2β Averts Ferroptosis By Eliminating A Redox Lipid Death Signal (2020) (88)
- HLA class I-associated expansion of TRBV11-2 T cells in Multisystem Inflammatory Syndrome in Children. (2021) (87)
- Toward a molecular understanding of the anisotropic response of proteins to external forces: insights from elastic network models. (2008) (87)
- Pre‐existing soft modes of motion uniquely defined by native contact topology facilitate ligand binding to proteins (2011) (87)
- ATPase Subdomain IA Is a Mediator of Interdomain Allostery in Hsp70 Molecular Chaperones (2014) (86)
- Functional motions of influenza virus hemagglutinin: a structure-based analytical approach. (2002) (83)
- Discovery of novel Myc-Max heterodimer disruptors with a three-dimensional pharmacophore model. (2009) (83)
- Inhibitor binding alters the directions of domain motions in HIV‐1 reverse transcriptase (2002) (81)
- Efficient characterization of collective motions and interresidue correlations in proteins by low-resolution simulations. (1997) (79)
- Escherichia coli adenylate kinase dynamics: Comparison of elastic network model modes with mode‐coupling 15N‐NMR relaxation data (2004) (79)
- Inflammatory modulation of hepatocyte apoptosis by nitric oxide: in vivo, in vitro, and in silico studies. (2004) (79)
- Anisotropic fluctuations of amino acids in protein structures: insights from X-ray crystallography and elastic network models (2007) (75)
- Druggability Assessment of Allosteric Proteins by Dynamics Simulations in the Presence of Probe Molecules (2012) (75)
- Molecular Mechanism of Dopamine Transport by Human Dopamine Transporter. (2015) (73)
- Mechanism of signal propagation upon retinal isomerization: insights from molecular dynamics simulations of rhodopsin restrained by normal modes. (2008) (71)
- Druggability Assessment of Allosteric Proteins by Dynamics Simulations in the Presence of Probe Molecules. (2013) (71)
- Fast‐folding protein kinetics, hidden intermediates, and the sequential stabilization model (2002) (70)
- Discovery and Characterization of Novel Small Molecule Inhibitors of Human Cdc25B Dual Specificity Phosphatase (2004) (70)
- Folding core predictions from network models of proteins (2004) (69)
- Coordination geometry of nonbonded residues in globular proteins. (1996) (68)
- Impact of South African 501.V2 Variant on SARS-CoV-2 Spike Infectivity and Neutralization: A Structure-based Computational Assessment (2021) (68)
- Insights into the Modulation of Dopamine Transporter Function by Amphetamine, Orphenadrine, and Cocaine Binding (2015) (68)
- Structural dynamics is a determinant of the functional significance of missense variants (2018) (64)
- Tenascin cytotactin epidermal growth factor‐like repeat binds epidermal growth factor receptor with low affinity (2007) (63)
- Role of Hsp70 ATPase Domain Intrinsic Dynamics and Sequence Evolution in Enabling its Functional Interactions with NEFs (2010) (62)
- iGNM 2.0: the Gaussian network model database for biomolecular structural dynamics (2015) (62)
- Characterization of interactions and metal ion binding sites in proteins (1994) (60)
- Large collective motions regulate the functional properties of glutamate transporter trimers (2011) (60)
- Global motions exhibited by proteins in micro- to milliseconds simulations concur with anisotropic network model predictions. (2013) (60)
- Global transitions of proteins explored by a multiscale hybrid methodology: application to adenylate kinase. (2013) (59)
- Dynamics and allosteric potential of the AMPA receptor N‐terminal domain (2011) (59)
- Cooperative Dynamics of Intact AMPA and NMDA Glutamate Receptors: Similarities and Subfamily-Specific Differences. (2015) (59)
- COVID-19–associated multisystem inflammatory syndrome in children (MIS-C): A novel disease that mimics toxic shock syndrome—the superantigen hypothesis (2020) (59)
- Development of small-molecule PUMA inhibitors for mitigating radiation-induced cell death. (2011) (58)
- Intrinsic dynamics is evolutionarily optimized to enable allosteric behavior. (2019) (58)
- Complete Mapping of Substrate Translocation Highlights the Role of LeuT N-terminal Segment in Regulating Transport Cycle (2014) (57)
- Molecular simulations elucidate the substrate translocation pathway in a glutamate transporter (2009) (55)
- Domain swapping proceeds via complete unfolding: a 19F- and 1H-NMR study of the Cyanovirin-N protein. (2012) (54)
- An insertion unique to SARS-CoV-2 exhibits superantigenic character strengthened by recent mutations (2020) (54)
- Empowerment of 15-Lipoxygenase Catalytic Competence in Selective Oxidation of Membrane ETE-PE to Ferroptotic Death Signals, HpETE-PE. (2018) (52)
- Coupled global and local changes direct substrate translocation by neurotransmitter-sodium symporter ortholog LeuT. (2013) (51)
- On the functional significance of soft modes predicted by coarse-grained models for membrane proteins (2010) (50)
- Regulation of XIAP Turnover Reveals a Role for USP11 in Promotion of Tumorigenesis (2016) (49)
- Monoamine transporters: structure, intrinsic dynamics and allosteric regulation (2019) (49)
- Coarse‐grained simulations of conformational dynamics of proteins: Application to apomyoglobin (1998) (49)
- Analysis of correlated mutations in HIV-1 protease using spectral clustering (2008) (48)
- Rhapsody: predicting the pathogenicity of human missense variants (2020) (47)
- In Vivo Structure–Activity Relationship Studies Support Allosteric Targeting of a Dual Specificity Phosphatase (2014) (46)
- The mechanism of substrate release by the aspartate transporter GltPh: insights from simulations. (2011) (46)
- Changes in Dynamics upon Oligomerization Regulate Substrate Binding and Allostery in Amino Acid Kinase Family Members (2011) (46)
- Optimal design of protein docking potentials: Efficiency and limitations (2005) (46)
- Computing the transition state populations in simple protein models. (2003) (45)
- Coupling between Catalytic Loop Motions and Enzyme Global Dynamics (2012) (45)
- Segmental motions of cis-polyisoprene in the bulk state : interpretation of dielectric relaxation data (1992) (45)
- PEBP1 acts as a rheostat between prosurvival autophagy and ferroptotic death in asthmatic epithelial cells (2020) (45)
- Structure-Encoded Global Motions and Their Role in Mediating Protein-Substrate Interactions. (2015) (44)
- Microseconds Simulations Reveal a New Sodium-binding Site and the Mechanism of Sodium-coupled Substrate Uptake by LeuT* (2014) (44)
- Multisystem Inflammatory Syndrome in Children in the United States. (2020) (44)
- Resolving the paradox of ferroptotic cell death: Ferrostatin-1 binds to 15LOX/PEBP1 complex, suppresses generation of peroxidized ETE-PE, and protects against ferroptosis (2020) (44)
- Survey of the analysis of continuous conformational variability of biological macromolecules by electron microscopy. (2019) (44)
- ProDy 2.0: increased scale and scope after 10 years of protein dynamics modelling with Python (2021) (44)
- Dynamic mechanical study of amorphous phases in poly(ethylene terephthalate) /nylon-6 blends (1995) (43)
- Characterization of anticancer agents by their growth inhibitory activity and relationships to mechanism of action and structure. (2000) (43)
- Predisposition of the dark state of rhodopsin to functional changes in structure (2006) (43)
- Designing inhibitors of cytochrome c/cardiolipin peroxidase complexes: mitochondria-targeted imidazole-substituted fatty acids. (2014) (42)
- Residue packing in proteins: Uniform distribution on a coarse-grained scale (2002) (40)
- Mining frequent patterns in protein structures: a study of protease families (2004) (40)
- Intracellular Gating in an Inward-facing State of Aspartate Transporter GltPh Is Regulated by the Movements of the Helical Hairpin HP2* (2013) (40)
- Constraints imposed by the membrane selectively guide the alternating access dynamics of the glutamate transporter GltPh. (2012) (40)
- Conformational statistics of poly(dimethylsiloxane). 1. Probability distribution of rotational isomers from molecular dynamics simulations (1991) (39)
- Pharmacological suppression of B7-H4 glycosylation restores antitumor immunity in immune-cold breast cancers. (2020) (39)
- On the Conservation of the Slow Conformational Dynamics within the Amino Acid Kinase Family: NAGK the Paradigm (2010) (39)
- A genome-wide RNAi screen identifies potential drug targets in a C. elegans model of α1-antitrypsin deficiency. (2014) (38)
- ClustENM: ENM-Based Sampling of Essential Conformational Space at Full Atomic Resolution. (2016) (38)
- The Gaussian Network Model: Theory and Applications (2005) (38)
- Using Entropy Maximization to Understand the Determinants of Structural Dynamics beyond Native Contact Topology (2010) (38)
- Comparative Dynamics of NMDA- and AMPA-Glutamate Receptor N-Terminal Domains (2012) (38)
- Segmental orientation in model networks of poly(dimethylsiloxane): Fourier-transform infrared dichroism measurements and theoretical interpretation (1992) (36)
- A Perspective on Implementing a Quantitative Systems Pharmacology Platform for Drug Discovery and the Advancement of Personalized Medicine (2016) (36)
- Relating structure to function through the dominant slow modes of motion of DNA topoisomerase II (1999) (35)
- Structural dynamics of nucleosome core particle: Comparison with nucleosomes containing histone variants (2004) (35)
- Residue coordination in proteins conforms to the closest packing of spheres (2002) (35)
- Significance of p53 dynamics in regulating apoptosis in response to ionizing radiation, and polypharmacological strategies (2014) (35)
- A novel strategy to block mitotic progression for targeted therapy (2019) (34)
- Role of water on unfolding kinetics of helical peptides studied by molecular dynamics simulations. (1997) (33)
- Global Motions of the Nuclear Pore Complex: Insights from Elastic Network Models (2009) (32)
- Shared Signature Dynamics Tempered by Local Fluctuations Enables Fold Adaptability and Specificity (2019) (32)
- Allosteric Modulation of Intact γ-Secretase Structural Dynamics. (2017) (32)
- The origin and extent of coarse‐grained regularities in protein internal packing (2003) (32)
- Innate immune memory and homeostasis may be conferred through crosstalk between the TLR3 and TLR7 pathways (2016) (31)
- Computational Insights on the Competing Effects of Nitric Oxide in Regulating Apoptosis (2008) (31)
- Lattice model for segmental orientation in deformed polymeric networks. 1. Contribution of intermolecular correlations (1990) (31)
- The center for causal discovery of biomedical knowledge from big data (2015) (31)
- Investigation of local motions in polymers by the dynamic rotational isomeric state model (1987) (30)
- Computational Generation inhibitor-Bound Conformers of P38 Map Kinase and Comparison with Experiments (2011) (30)
- Vibrational dynamics of icosahedrally symmetric biomolecular assemblies compared with predictions based on continuum elasticity. (2009) (30)
- Toward a Molecular Understanding of the Interaction of Dual Specificity Phosphatases with Substrates: Insights from Structure-Based Modeling and High Throughput Screening (2008) (30)
- Markov Methods for Hierarchical Coarse-Graining of Large Protein Dynamics (2006) (29)
- DYNAMICS OF PROTEINS AND BIOMOLECULAR COMPLEXES: INFERRING FUNCTIONAL MOTIONS FROM STRUCTURE (1999) (29)
- Energy landscape of LeuT from molecular simulations. (2015) (29)
- Characterization of Differential Dynamics, Specificity, and Allostery of Lipoxygenase Family Members (2019) (28)
- Quantitative assessment of cell fate decision between autophagy and apoptosis (2017) (28)
- The sodium/galactose symporter crystal structure is a dynamic, not so occluded state. (2010) (28)
- Topological basis of signal integration in the transcriptional-regulatory network of the yeast, Saccharomyces cerevisiae (2006) (27)
- Multisystem Inflammatory Syndrome in Children and Long COVID: The SARS-CoV-2 Viral Superantigen Hypothesis (2022) (27)
- PINK1 Interacts with VCP/p97 and Activates PKA to Promote NSFL1C/p47 Phosphorylation and Dendritic Arborization in Neurons (2018) (26)
- Structure, Dynamics, and Allosteric Potential of Ionotropic Glutamate Receptor N-Terminal Domains (2015) (26)
- "Only a Life Lived for Others Is Worth Living": Redox Signaling by Oxygenated Phospholipids in Cell Fate Decisions. (2017) (26)
- Regulation of CFTR Bicarbonate Channel Activity by WNK1: Implications for Pancreatitis and CFTR-Related Disorders (2019) (25)
- Protein Actions: Principles and Modeling (2017) (25)
- Lattice model for segmental orientation in deformed polymeric networks. II, Effect of chain stiffness and thermotropic interactions (1990) (25)
- FlexE: Using elastic network models to compare models of protein structure. (2012) (25)
- Comparative study of the effectiveness and limitations of current methods for detecting sequence coevolution (2015) (24)
- Metal-binding sites are designed to achieve optimal mechanical and signaling properties. (2010) (24)
- Intramolecular Contributions to Stretched-Exponential Relaxation Behavior in Polymers (1994) (24)
- Allosteric interactions in the parathyroid hormone GPCR–arrestin complex formation (2020) (24)
- Molecular dynamics analysis of transitions between rotational isomers in polymethylene (1991) (24)
- Improved Total-Body Irradiation Survival by Delivery of Two Radiation Mitigators that Target Distinct Cell Death Pathways (2017) (24)
- A Sequence Alignment-Independent Method for Protein Classification (2004) (23)
- Determination of polymer-solvent interaction parameter from swelling of networks: the system poly(2-hydroxyethyl methacrylate)-diethylene glycol (1987) (23)
- BalestraWeb: efficient online evaluation of drug–target interactions (2014) (23)
- Essential site scanning analysis: A new approach for detecting sites that modulate the dispersion of protein global motions (2020) (22)
- HiDeF: identifying persistent structures in multiscale ‘omics data (2021) (22)
- Anti-Ferroptosis Drug Enhances Total-Body Irradiation Mitigation by Drugs that Block Apoptosis and Necroptosis (2020) (22)
- A monoclonal antibody against staphylococcal enterotoxin B superantigen inhibits SARS-CoV-2 entry in vitro (2020) (22)
- A network of phosphatidylinositol (4,5)-bisphosphate (PIP2) binding sites on the dopamine transporter regulates amphetamine behavior in Drosophila Melanogaster (2019) (22)
- Structurally Unique Inhibitors of Human Mitogen-Activated Protein Kinase Phosphatase-1 Identified in a Pyrrole Carboxamide Library (2007) (22)
- Shared dynamics of LeuT superfamily members and allosteric differentiation by structural irregularities and multimerization (2018) (21)
- Substrate transport and anion permeation proceed through distinct pathways in glutamate transporters (2017) (21)
- A stable three-enzyme creatinine biosensor. 1. Impact of structure, function and environment on PEGylated and immobilized sarcosine oxidase. (2005) (21)
- Inhibition of Peroxidase Activity of Cytochrome c: De Novo Compound Discovery and Validation (2015) (20)
- A stable three enzyme creatinine biosensor. 2. Analysis of the impact of silver ions on creatine amidinohydrolase. (2005) (20)
- Allosteric modulation of human dopamine transporter activity under conditions promoting its dimerization (2017) (20)
- Spatial bias in cAMP generation determines biological responses to PTH type 1 receptor activation (2021) (20)
- Modeling the deamidation of asparagine residues via succinimide intermediates (2001) (20)
- Theoretical and experimental study of dissolution of inhomogeneities formed during spinodal decomposition in polymer mixtures (1992) (19)
- Quantitative Assessment of the Energetics of Dopamine Translocation by Human Dopamine Transporter. (2017) (19)
- The relationship between N‐gram patterns and protein secondary structure (2007) (19)
- Gene expression analysis of dendritic cells that prevent diabetes in NOD mice: analysis of chemokines and costimulatory molecules (2011) (19)
- A comparative analysis of the equilibrium dynamics of a designed protein inferred from NMR, X‐ray, and computations (2009) (19)
- Protonation of Glutamate 208 Induces the Release of Agmatine in an Outward-facing Conformation of an Arginine/Agmatine Antiporter* (2011) (19)
- An adaptive weighted ensemble procedure for efficient computation of free energies and first passage rates. (2012) (18)
- A novel small-molecule antagonizes PRMT5-mediated KLF4 methylation for targeted therapy (2019) (18)
- Key residues controlling bidirectional ion movements in Na+/Ca2+ exchanger. (2018) (18)
- Towards gaining sight of multiscale events: utilizing network models and normal modes in hybrid methods. (2020) (18)
- Effect of Dimerization on the Dynamics of Neurotransmitter:Sodium Symporters (2017) (17)
- Packing of sidechains in low-resolution models for proteins. (1998) (17)
- Comparison of Dynamic Rotational Isomeric State Results with Previous Expressions for Local Chain Motion (1989) (17)
- Nanomechanics of multidomain neuronal cell adhesion protein contactin revealed by single molecule AFM and SMD (2017) (17)
- Segmental orientation in uniaxially deformed networks : a higher order approximation for finite chains and large deformations (1991) (17)
- Cooperative dynamics of proteins unraveled by network models (2011) (17)
- Elastic Network Models For Biomolecular Dynamics: Theory and Application to Membrane Proteins and Viruses (2009) (17)
- Targeting of dopamine transporter to filopodia requires an outward-facing conformation of the transporter (2017) (16)
- Effect of Molecular Structure on Local Chain Dynamics: Analytical Approaches and Computational Methods (1994) (16)
- Connecting Neuronal Cell Protective Pathways and Drug Combinations in a Huntington’s Disease Model through the Application of Quantitative Systems Pharmacology (2017) (16)
- EIF3H Orchestrates Hippo Pathway–Mediated Oncogenesis via Catalytic Control of YAP Stability (2020) (16)
- Equilibrium states of rigid bodies with multiple interaction sites: Application to protein helices (1997) (16)
- Chromosomal dynamics predicted by an elastic network model explains genome-wide accessibility and long-range couplings (2016) (16)
- Recruitment of pro-IL-1α to mitochondrial cardiolipin, via shared LC3 binding domain, inhibits mitophagy and drives maximal NLRP3 activation (2020) (16)
- Main-Chain Lyotropic Liquid-Crystalline Elastomers. 1. Syntheses of Cross-Linked Polyisocyanate Gels Acquiring Liquid-Crystalline Behavior in the Swollen State (1996) (16)
- Configurational statistics of poly(dimethylsiloxane). 2. A new rotational isomeric state approach (1991) (15)
- Mechanisms of Action of Autophagy Modulators Dissected by Quantitative Systems Pharmacology Analysis (2020) (15)
- An analog of glibenclamide selectively enhances autophagic degradation of misfolded α1-antitrypsin Z (2019) (15)
- Correction: Signal Propagation in Proteins and Relation to Equilibrium Fluctuations (2007) (15)
- The Gaussian Network Model (2005) (15)
- Kinematics of polymer chains with freely rotating bonds in a restrictive environment. 1. Theory (1992) (15)
- Pore dilatation increases the bicarbonate permeability of CFTR, ANO1 and glycine receptor anion channels (2016) (15)
- Local dynamics of bulk polybutadienes of various microstructures : Comparison of theory with NMR measurements (1997) (15)
- Molecular dynamics analysis of coupling between librational motions and isomeric jumps in chain molecules (1996) (14)
- A monoclonal antibody against staphylococcal enterotoxin B superantigen inhibits SARS-CoV-2 entry in vitro (2021) (14)
- A Conformational Switch in a Partially Unwound Helix Selectively Determines the Pathway for Substrate Release from the Carnitine/γ-Butyrobetaine Antiporter CaiT* (2012) (14)
- RNA bulge entropies in the unbound state correlate with peptide binding strengths for HIV-1 and BIV TAR RNA because of improved conformational access. (1998) (14)
- Application of the dynamic rotational isomeric states model to poly(ethylene oxide) and comparison with nuclear magnetic relaxation data (1989) (14)
- Longer simulations sample larger subspaces of conformations while maintaining robust mechanisms of motion (2012) (14)
- Osmotic Compressibility and Mechanical Moduli of Swollen Polymeric Networks (1987) (13)
- A systems‐level study reveals host‐targeted repurposable drugs against SARS‐CoV‐2 infection (2021) (13)
- Cooperative structural transitions induced by non-homogeneous intramolecular interactions in compact globular proteins. (1994) (13)
- Activation and desensitization of ionotropic glutamate receptors by selectively triggering pre-existing motions (2019) (13)
- Theoretical Analysis of the Elastomeric and Optical Properties of Networks of Semirigid Chains in the Swollen State (1995) (13)
- QuartataWeb: Integrated Chemical–Protein-Pathway Mapping for Polypharmacology and Chemogenomics (2020) (13)
- Harnessing Human Microphysiology Systems as Key Experimental Models for Quantitative Systems Pharmacology. (2019) (13)
- Make tough plastic films from gelatin (1996) (13)
- Molecular Orientation in Deformed Bimodal Networks . 2 . Fourier Transform Infrared Measurements on Poly ( dimethylsi 1 oxane ) Networks and Comparison with Theory (2001) (12)
- Computer simulations of two-dimensional trifunctional bimodal networks (1994) (12)
- Dynamic Modulation of Binding Affinity as a Mechanism for Regulating Interferon Signaling. (2017) (12)
- MOLECULAR-ORIENTATION IN DEFORMED BIMODAL NETWORKS .1. THEORY (1995) (12)
- Stabilization of intermediate density states in globular proteins by homogeneous intramolecular attractive interactions. (1994) (12)
- Identification of motions in membrane proteins by elastic network models and their experimental validation. (2012) (12)
- Anisotropy of static and dynamic orientational correlations in N‐alkanes (1988) (12)
- A dynamic rotational isomeric state approach for extension of the time scale of the local dynamics observed in fully atomistic molecular dynamics simulations: Application to polybutadiene (1996) (12)
- Identification of a unique TCR repertoire, consistent with a superantigen selection process in Children with Multi-system Inflammatory Syndrome (2020) (12)
- Relating the Structure of HIV-1 Reverse Transcriptase to Its Processing Step (2000) (12)
- Recognition of native structure from complete enumeration of low‐resolution models with constraints (1998) (12)
- Activation energies of local conformational transitions in polymer chains (1987) (12)
- Pharmmaker: Pharmacophore modeling and hit identification based on druggability simulations (2019) (11)
- CONFORMATIONAL CHARACTERISTICS OF POLY(ETHYL METHACRYLATE). DIPOLE MOMENT MEASUREMENTS AND CALCULATIONS (1990) (11)
- Toward Understanding Allosteric Signaling Mechanisms in the ATPase Domain of Molecular Chaperones (2010) (11)
- Dynamics of conformational transitions to isomeric states favoring intramolecular excimer formation in aromatic polyesters with methylene or oxyethylene spacers (1989) (11)
- Impact of new variants on SARS-CoV-2 infectivity and neutralization: A molecular assessment of the alterations in the spike-host protein interactions (2022) (11)
- Druggability Simulations and X-Ray Crystallography Reveal a Ligand-Binding Site in the GluA3 AMPA Receptor N-Terminal Domain. (2019) (11)
- Main-Chain Lyotropic Liquid-Crystalline Elastomers. 2. Orientation and Mechanical Properties of Polyisocyanate Films (1996) (11)
- Stochastics of rotational isomeric transitions in polymer chains (1989) (10)
- Local solvent effects on configurational characteristics of polymer chains: poly(p-chlorostyrene) in benzene (1986) (10)
- Adaptability and specificity: how do proteins balance opposing needs to achieve function? (2020) (10)
- Trimerization of dopamine transporter triggered by AIM-100 binding: Molecular mechanism and effect of mutations (2019) (10)
- NO● Represses the Oxygenation of Arachidonoyl PE by 15LOX/PEBP1: Mechanism and Role in Ferroptosis (2021) (10)
- Molecular dynamics simulations of poly(dialkylsiloxanes): conformational statistics and unperturbed chain dimensions (1992) (10)
- Llamanade: An open-source computational pipeline for robust nanobody humanization. (2021) (9)
- Local Orientational Motions in Flexible Polymeric Chains (1990) (9)
- Swelling of sodium chloride filled polybutadiene networks in water, water/ acetone and water/THF mixtures (1998) (9)
- Psychomotor impairments and therapeutic implications revealed by a mutation associated with infantile Parkinsonism-Dystonia (2021) (9)
- Collective deformations in proteins determined by a mode analysis of molecular dynamics trajectories (2002) (9)
- Solvent effect on translational diffusivity and orientational mobility of polymers in solution: A molecular dynamics study (1993) (9)
- Differences in the intrinsic spatial dynamics of the chromatin contribute to cell differentiation (2019) (9)
- Heterogeneities in Axonal Structure and Transporter Distribution Lower Dopamine Reuptake Efficiency (2018) (9)
- Direct coupling of oligomerization and oligomerization-driven endocytosis of the dopamine transporter to its conformational mechanics and activity (2021) (8)
- Orientational and conformational correlations in deformed polymer chains with fixed end-to-end separation: A Brownian dynamics simulation study (1992) (8)
- ClustENMD: efficient sampling of biomolecular conformational space at atomic resolution (2021) (8)
- New insight into the significance of KLF4 PARylation in genome stability, carcinogenesis, and therapy (2020) (8)
- An infra-red dichroism investigation of segmental orientation in dry and swollen poly(dimethylsiloxane) networks (1993) (8)
- Quantitative Systems Pharmacological Analysis of Drugs of Abuse Reveals the Pleiotropy of Their Targets and the Effector Role of mTORC1 (2018) (8)
- An Introduction to Simulation and Visualization of Biological Systems at Multiple Scales: A Summer Training Program for Interdisciplinary Research (2006) (8)
- Llamanade: an open-source computational pipeline for robust nanobody humanization (2021) (8)
- Stochastic Treatment of Conformational Transitions of Polymer Chains in the Sub-Rouse Regime (1991) (7)
- Effect of surrounding medium on intramolecular conformational changes in probe molecules (1990) (7)
- Response of a single grafted polyethylene chain to simple shear flow: A Brownian dynamics simulation study (1996) (7)
- Kinematics of Polymer Chains with Freely Rotating Bonds in a Restrictive Environment. 2. Conformational and Orientational Correlations (1992) (7)
- Kinematics of Polymer Chains in Dense Medium. 4. Effect of Backbone Geometry and Application to Polybutadiene (1996) (7)
- Oriented Gelatin—A New Source for High-Performance Materials (1996) (7)
- Experimental Studies of Elastomeric and Optical Properties, and Strain-Induced Liquid-Crystalline Phase Transitions, in Deformed (Hydroxypropyl)cellulose Networks in the Swollen State (1995) (7)
- Rapid assessment of correlated amino acids from pair-to-pair (P2P) substitution matrices (2007) (7)
- Local Dynamics of cis-1,4-Polybutadiene and cis-1,4-Polyisoprene. A Comparative Study Based on Cooperative Kinematics Theory and NMR Experiments (1999) (7)
- Reply to ‘Comment on elastic network models and proteins’ (2007) (7)
- Functional Characterization of the Dopaminergic Psychostimulant Sydnocarb as an Allosteric Modulator of the Human Dopamine Transporter (2021) (6)
- Protein functional motion query and visualization (2004) (6)
- Precise druggability of the PTH type 1 receptor (2021) (6)
- Sodium-coupled Secondary Transporters: Insights from Structure-based Computations (2011) (6)
- Dynamics of conformational transitions to isomeric states favoring intramolecular excimer formation in polymeric chains. Application to dimer models of polystyrene (1989) (6)
- Modulation of Toroidal Proteins Dynamics in Favor of Functional Mechanisms upon Ligand Binding. (2020) (6)
- efficient calculation of the intramolecular contribution to orientational autocorrelation functions using dynamic rotational isomeric state theory (1990) (6)
- Relative contributions of coupled rotations and small-amplitude torsions to conformational relaxation in polymers (1996) (6)
- Approximating deformation fields for the analysis of continuous heterogeneity of biological macromolecules by 3D Zernike polynomials (2021) (6)
- Sampling of Protein Conformational Space Using Hybrid Simulations: A Critical Assessment of Recent Methods (2022) (6)
- Inactivation of RIP3 kinase sensitizes to 15LOX/PEBP1-mediated ferroptotic death (2022) (5)
- Mechanism of Local Conformational Transitions in Poly( dialkylsiloxanes), Molecular Dynamics Simulations and Dynamic Rotational Isomeric State Approach (1992) (5)
- Effects of Chain Structure and Network Constitution on Segmental Orientation in Deformed Amorphous Networks (1988) (5)
- Effect of flow on solutions of rodlike molecules (1986) (5)
- Molecular Modeling for Drug Discovery (2017) (5)
- Contribution of Short-Range Intramolecular Interactions to Local Chain Dynamics (1994) (4)
- Molecular Orientation in Deformed Bimodal Networks. 2. Fourier Transform Infrared Measurements on Poly(dimethylsiloxane) Networks and Comparison with Theory (1995) (4)
- Complementary computational and experimental evaluation of missense variants in the ROMK potassium channel (2020) (4)
- Local relaxation of polymers in dense media: Cooperative kinematics theory and applications (1997) (4)
- Coupled mixed model for joint genetic analysis of complex disorders with two independently collected data sets (2018) (4)
- Coupling between different modes in local chain dynamics: a modal correlation analysis (1995) (4)
- Recruitment of rare 3-grams at functional sites: Is this a mechanism for increasing enzyme specificity? (2007) (4)
- A closed form solution for the internal dynamics of polymer chains. I. Bonds with independent rotational potentials (1990) (4)
- State-dependent sequential allostery exhibited by chaperonin TRiC/CCT revealed by network analysis of Cryo-EM maps (2020) (4)
- Predicting Protein-Protein Interactions Using Symmetric Logistic Matrix Factorization (2021) (4)
- Kinematics of Polymer Chains in Dense Media. 3. Influence of Intramolecular Conformational Potentials (1995) (4)
- STRUCTURAL AND MECHANICAL STUDIES OF A BLEND OF POLY(BUTYLENE TEREPHTHALATE) AND POLY(ETHER ESTER) BASED ON POLY(BUTYLENE TEREPHTHALATE) AND POLY(ETHYLENE GLYCOL) (1994) (4)
- Multi-Scale Spatial Simulations Reveal the Effect of Dopamine Transporter Localization on Dopamine Neurotransmission (2016) (3)
- Rheology of solutions of rodlike polymers: theory and comparison with experiments (1989) (3)
- MATRIX METALLOPROTEINASE (MMP)-8 IS CRITICAL In A MURINE MODEL OF SEPSIS As Well As IN PATIENTS WITH COMMUNITY- ACQUIRED PNEUMONIA (CAP)-ASSOCIATED SEPSIS (2010) (3)
- Rhapsody: Pathogenicity prediction of human missense variants based on protein sequence, structure and dynamics (2019) (3)
- Radioresistance of Serpinb3a-/- Mice and Derived Hematopoietic and Marrow Stromal Cell Lines. (2019) (3)
- Role of Structural Heterogeneities on Segmental Orientation in Deformed Chains: Application to Alternating Copolymers (1994) (3)
- A new approach to the relationship between chemical structure and local dynamics nuclear magnetic resonance measurements in dilute polymer solutions (1988) (3)
- Novel orientation techniques for the preparation of high-performance materials from semi-flexible polymers such as the cellulosics (1992) (3)
- Networks with Semi-Flexible Chains (1992) (3)
- Discovery of (R)-N-Benzyl-2-(2,5-dioxopyrrolidin-1-yl)propanamide [(R)-AS-1], a Novel Orally Bioavailable EAAT2 Modulator with Drug-like Properties and Potent Antiseizure Activity In Vivo (2022) (3)
- Segmental Orientation in Deformed Networks. 2. Molecular Theory for Biaxial Deformation (1995) (3)
- Interpretation of segmental orientation in deformed networks in terms of constrained junction model of rubber elasticity (1993) (3)
- Impact of New Variants on SAR-CoV-2 Infectivity and Neutralization: A Molecular Assessment of the Alterations in the Spike-Host Protein Interactions (2021) (3)
- Impact of pro-domain stability of matrix metalloproteinase-8 on the outcome of sepsis (2011) (3)
- Structural and Dynamic Effects of PTEN C-terminal Tail Phosphorylation (2021) (3)
- A hierarchical elastic network model for unsupervised electron density map segmentation (2011) (2)
- The configurational contribution to the segmental orientation in network chains subject to perturbation by the excluded volume effect (1988) (2)
- Coupling between neurotransmitter translocation and protonation state of a titratable residue during Na ⁺-coupled transport. (2014) (2)
- 9.3 In Silico Coarse-Grained Approaches to Structural Dynamics and Function of Proteins and their Assemblies (2012) (2)
- Identifying persistent structures in multiscale ‘omics data (2020) (2)
- Time‐dependent probability distribution functions for orientational motions of segments in polymer chains (1992) (2)
- Correlated fluctuations in polymer networks (1998) (2)
- BIMODAL DISTRIBUTION OF RELAXATIONAL MODES FOR THE HELIX-COIL TRANSITION IN POLY(OXYMETHYLENE) (1991) (2)
- E. coli Adenylate Kinase Dynamics: Comparison of Elastic Network Model Modes with Mode-Coupling (2004) (2)
- Activation and Speciation Mechanisms in Class A GPCRs (2022) (2)
- Isotropic-nematic phase transitions in polymer networks deformed in the dry and swollen states (1992) (2)
- Normal mode analysis of membrane protein dynamics using the vibrational subsystem analysis. (2021) (2)
- Local dynamics and glass transition (1998) (2)
- Bile Acids Gate Dopamine Transporter Mediated Currents (2021) (2)
- Disulfide bridge formation prevents CaMKII/Calmodulin interaction in Parkinson’s disease (2020) (1)
- Stochastic modeling of p53-regulated apoptosis upon radiation damage (2011) (1)
- A Simple Coarse-Grained Model to Map the Transition Pathway Between Two Stable Conformations using the Anisotropic Elastic Network Model (2013) (1)
- Coupled mixed model for joint genetic analysis of complex disorders with two independently collected data sets (2021) (1)
- Stress-strain relations and molecular orientation in highly crosslinked cis-polyisoprene networks (1993) (1)
- Metal-Binding Residues are Distinguished by their Lower Mobilities and Efficient Signal Propagation Properties (2010) (1)
- Continuous heterogeneity analysis of CryoEM images through Zernike polynomials and spherical harmonics (2021) (1)
- Nonlinear kinetics of spinodal decomposition, and dissolution of inhomogeneities formed by spinodal decomposition in polymer blends (1992) (1)
- Allostery as Structure‐Encoded Collective Dynamics (2020) (1)
- Probability Distribution of Rotational Isomers from Molecular Dynamics Simulations (2001) (1)
- Molecular Basis for the Functionality of γ-Secretase Inferred From Structure-Based Modeling and Druggability Simulations (2018) (1)
- Author Correction: Nanomechanics of multidomain neuronal cell adhesion protein contactin revealed by single molecule AFM and SMD (2018) (1)
- Dynamic rotational isomeric state approach for segmental motions of cis -polyisoprene in the bulk state (1993) (1)
- Protein dynamics developments for the large scale and cryoEM: case study of ProDy 2.0 (2022) (1)
- Syntaxin 1 Ser14 phosphorylation is required for nonvesicular dopamine release (2023) (1)
- Dependence of segmental orientation on polymer conformational characteristics (1995) (1)
- Mutually beneficial confluence of structure-based modeling of protein dynamics and machine learning methods (2022) (1)
- Hierarchical Elastic Network Modeling of cryo-EM Data (2011) (1)
- Orientational mobility in uniaxially deformed polymer chains: a Brownian dynamics simulation study (1993) (1)
- MechStiff: A New Tool for Evaluating Stress-Induced Dynamics and Application to Cell Adhesion Proteins (2017) (1)
- Adaptive anisotropic network model: generating transition pathways of supramolecular system (2009) (0)
- Thermodynamics of Compatibility in Binary Polymeric Mixtures (1985) (0)
- ISMB 2010 Organization (2010) (0)
- Investigating the Role of Interfacial Residues in Mediating the Interdomain Allostery of Hsp70 (2013) (0)
- Unified Model of Synaptic Transmission (2015) (0)
- Potent Neutralization of Omicron and other SARS-CoV-2 Variants of Concern by Biparatopic Human VH Domains (2022) (0)
- A Ligand-Binding Site in the Glua3 AMPA Receptor N-Terminal Domain Observed in Druggability Simulations and X-Ray Crystallography (2019) (0)
- Author Correction: Nanomechanics of multidomain neuronal cell adhesion protein contactin revealed by single molecule AFM and SMD (2018) (0)
- Targeting of dopamine transporter to filopodia requires an outward-facing conformation of the transporter (2017) (0)
- Three approaches that may permit more efficient simulation of the dynamics of atomistic models of polymers (1997) (0)
- A Novel Approach To Studying The Impact Of Pro-Domain Stability On Matrix Metalloproteinase Activation (2011) (0)
- Biomolecular Systems Interactions, Dynamics, and Allostery: Reflections and New Directions. (2015) (0)
- Molecular Mechanisms of PTH/PTHrP class B GPCR Signaling and Pharmacological Implications. (2022) (0)
- Predicting Protein Structures from Sequences (2017) (0)
- Toxoplasmosis and sexual activity (1995) (0)
- Abstract 745: A non-redox reactive allosteric inhibitor of MAPK phosphatases with selective toxicity to human cancer cells (2014) (0)
- The suppressing role of nitric oxide in the ferroptotic cell death signal transduction (2022) (0)
- Application of Gaussian Network Model to Elucidate Functional Modes of Motion in a Glutamate Transporter (2010) (0)
- Global Transitions or Proteins Explored by a Multiscale Hybrid Methodology: Application to Dopamine Transporter (2013) (0)
- Reality's A Drag: Accounting For Friction In Simple Protein Models (2009) (0)
- Generalized rules for the optimization of elastic network models (2009) (0)
- Insights into the Mechanism of Release of Substrate in the Inward Facing Glutamate Transporter from Molecular Dynamics Simulations (2011) (0)
- Location Bias in cAMP Signaling and its effects on Parathyroid Hormone Receptor Biological Effectiveness (2021) (0)
- Importance of Dimerization in Facilitating the Functional Dynamics of Neurotransmitter: Sodium Symporters (2017) (0)
- Elastic network modeling of cellular networks unveils sensor and effector genes that control information flow (2021) (0)
- Proteins Perform Cellular Functions (2017) (0)
- Dynamics of AMPA Receptors from Simulations and Electron Microscopy (2019) (0)
- Extraordinary Acoustic Raman Spectroscopy of PR65 (2021) (0)
- Cooperative mechanics of PR65 scaffold underlies the allosteric regulation of the phosphatase PP2A. (2023) (0)
- Folding and Aggregation Are Cooperative Transitions (2017) (0)
- Transition Pathways of Proteins Explored by Combining Molecular Dynamics Simulations and Monte Carlo Sampling of Collective Modes (2012) (0)
- Local dynamics of freely rotating polymer chains in dense systems (1993) (0)
- Molecular Simulations and Conformational Sampling (2017) (0)
- Biomolecular transitions: efficient computation of pathways, free energies, and rates (2011) (0)
- Allosteric Modulator KM822 Attenuates Behavioral Actions of Amphetamine in Caenorhabditis elegans through Interactions with the Dopamine Transporter DAT-1 (2021) (0)
- Visualization of Molecular Events from Dopamine-Binding to -Release by Human Dopamine Transporter (2015) (0)
- The Principles of Protein Folding Kinetics (2017) (0)
- Harold A. Scheraga (10/18/1921–8/1/2020): A pioneering scientist who laid the foundations of protein science in the 20th century (2021) (0)
- Spherical Proteins and Viral Capsids Studied by Theory of Elasticity (2008) (0)
- Syntaxin1 Ser14 Phosphorylation is Required for Non-Vesicular Dopamine Release (2022) (0)
- HiDeF: identifying persistent structures in multiscale ‘omics data (2021) (0)
- Ismb/eccb 2019 Proceedings Papers Committee (2019) (0)
- Protein Geometries and Energetics (2017) (0)
- Author response: Substrate transport and anion permeation proceed through distinct pathways in glutamate transporters (2017) (0)
- Effect of Spatial Complexity on Dopaminergic Signaling Revealed from Multiscale Simulations (2017) (0)
- Biological Actions Arise from Protein Motions (2017) (0)
- Conformational Search: Proteins (2002) (0)
- Investigating Domain-Swapped Proteins by 19F NMR (2011) (0)
- Correction: Mechanisms of CFTR Functional Variants That Impair Regulated Bicarbonate Permeation and Increase Risk for Pancreatitis but Not for Cystic Fibrosis (2014) (0)
- Nanomechanics of multidomain neuronal cell adhesion protein contactin revealed by single molecule AFM and SMD (2017) (0)
- A Coarse Grained Approach for the Simulation of Proteins (1996) (0)
- Faculty Opinions recommendation of Structural basis for the recognition of SARS-CoV-2 by full-length human ACE2. (2020) (0)
- Precision druggability of a class B GPCR, the PTH type 1 receptor (2021) (0)
- Mathematical Modeling Reveals a Synergistic Mechanism of Toll-like Receptor Pathways (2014) (0)
- A Detailed Comparison Between The NMR Ensemble, Two X-ray Models And Computational Predictions Of Motions For A Designed Sugar Binding Protein (2009) (0)
- Proteins Are Polymers That Fold into Specific Structures (2017) (0)
- Potent and broad neutralization of SARS-CoV-2 variants of concern (VOCs) including omicron sub-lineages BA.1 and BA.2 by biparatopic human VH domains (2022) (0)
- A Quantitative Systems Pharmacology Platform Reveals NAFLD Pathophysiological States and Targeting Strategies (2022) (0)
- Supplementary material from "Shared dynamics of LeuT superfamily members and allosteric differentiation by structural irregularities and multimerization" (2018) (0)
- Phospholipase iPLA 2 Averts Ferroptosis by Eliminating Death Signal, 15HpETE-PE: Relevance to Parkinson’s Disease (2021) (0)
- Dynamic Modulation of Binding as a Mechanism for Regulating Interferon Signaling (2018) (0)
- Computer Simulations of NAD Channeling between GAPDH and LDH (2013) (0)
- Dynamic Regulation of Bicarbonate Permeability through CFTR Channel by WNK1 (2020) (0)
- Spatial proximity coordinates histone modification and expression of multiple genes (2019) (0)
- Proteins Have Stable Equilibrium Conformations (2017) (0)
- Abstract 2533: Merger of Protein Dynamics Data and Machine Learning toward Assessing the Effect of Mutations (2023) (0)
- Quantitative assessment of cell fate decision between autophagy and apoptosis (2017) (0)
- Connecting Neuronal Cell Protective Pathways and Drug Combinations in a Huntington’s Disease Model through the Application of Quantitative Systems Pharmacology (2017) (0)
- Frustration in protein elastic network models (2010) (0)
- Framework for Neuronal Spikes, Spreading Depression, Ischemia-Induced Anions-Controlled and Glial in Spreading Depolarization and Increased Neuronal Susceptibil- ity to Ischemic due to Large Extracellular (2016) (0)
- Substrate translocation pathway in glutamate transporter: Insights from molecular simulations (2009) (0)
- Druggability of Ionotropic Glutamate Receptor N-Terminal Domains (2013) (0)
- Editorial: Targeting Membrane Proteins: Structure-Function-Dynamics Relationships (2022) (0)
- Intrinsic Transmembrane Flexibility of the Amyloid Precursor Protein Explored by Molecular Simulations (2013) (0)
- Faculty Opinions recommendation of The role of conformational dynamics and allostery in modulating protein evolution. (2020) (0)
- Local Dynamics of Polymer Chains in Restrictive Environment (1992) (0)
- GPCR kinases generate an APH1A phosphorylation barcode to regulate amyloid-β generation (2022) (0)
- Complete Mapping of Substrate Translocation Implicates the Secondary Binding Site and Highlights the Significance of LeuT N-Terminal Segment in Regulating Transport Cycle (2014) (0)
- The Short-Time Dynamics of Proteins Near Native State Conditions Signal to Robust Mechanisms Accessible at Long Times (2011) (0)
- Segmental Orientation in Deformed Rubbery Networks (2008) (0)
- Global Dynamics of Intact AMPA and NMDA Receptors using Elastic Network Models (2016) (0)
- Identification of native conformations of proteins using a low resolution model (1999) (0)
- Decoding of persistent multiscale structures in complex biological networks. (2020) (0)
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