Jack T. Pronk
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Biology
Jack T. Pronk's Degrees
- PhD Chemical Engineering University of California, Berkeley
- Masters Biotechnology Stanford University
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(Suggest an Edit or Addition)Jack T. Pronk's Published Works
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Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- The Ehrlich Pathway for Fusel Alcohol Production: a Century of Research on Saccharomyces cerevisiae Metabolism (2008) (986)
- Alcoholic fermentation of carbon sources in biomass hydrolysates by Saccharomyces cerevisiae: current status (2006) (540)
- Stoichiometry and compartmentation of NADH metabolism in Saccharomyces cerevisiae. (2001) (485)
- Pyruvate Metabolism in Saccharomyces cerevisiae (1996) (469)
- Genome sequencing and analysis of the filamentous fungus Penicillium chrysogenum (2008) (449)
- Metabolic engineering of a xylose-isomerase-expressing Saccharomyces cerevisiae strain for rapid anaerobic xylose fermentation. (2005) (393)
- CRISPR/Cas9: a molecular Swiss army knife for simultaneous introduction of multiple genetic modifications in Saccharomyces cerevisiae (2015) (367)
- High-level functional expression of a fungal xylose isomerase: the key to efficient ethanolic fermentation of xylose by Saccharomyces cerevisiae? (2003) (351)
- Evolutionary engineering of mixed-sugar utilization by a xylose-fermenting Saccharomyces cerevisiae strain. (2005) (349)
- The Genome-wide Transcriptional Responses of Saccharomyces cerevisiae Grown on Glucose in Aerobic Chemostat Cultures Limited for Carbon, Nitrogen, Phosphorus, or Sulfur* (2003) (339)
- Malic Acid Production by Saccharomyces cerevisiae: Engineering of Pyruvate Carboxylation, Oxaloacetate Reduction, and Malate Export (2008) (323)
- Role of Transcriptional Regulation in Controlling Fluxes in Central Carbon Metabolism of Saccharomyces cerevisiae (2004) (293)
- Metabolic engineering of yeast for production of fuels and chemicals. (2013) (293)
- De novo production of the flavonoid naringenin in engineered Saccharomyces cerevisiae (2012) (282)
- Minimal metabolic engineering of Saccharomyces cerevisiae for efficient anaerobic xylose fermentation: a proof of principle. (2004) (265)
- Effect of Specific Growth Rate on Fermentative Capacity of Baker’s Yeast (1998) (262)
- Novel Evolutionary Engineering Approach for Accelerated Utilization of Glucose, Xylose, and Arabinose Mixtures by Engineered Saccharomyces cerevisiae Strains (2008) (258)
- De novo sequencing, assembly and analysis of the genome of the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D, a model for modern industrial biotechnology (2012) (257)
- Auxotrophic Yeast Strains in Fundamental and Applied Research (2002) (257)
- High-cell-density fed-batch cultivation of the docosahexaenoic acid producing marine alga Crypthecodinium cohnii. (2003) (252)
- Reproducibility of Oligonucleotide Microarray Transcriptome Analyses (2002) (251)
- The fluxes through glycolytic enzymes in Saccharomyces cerevisiae are predominantly regulated at posttranscriptional levels (2007) (249)
- Development of efficient xylose fermentation in Saccharomyces cerevisiae: xylose isomerase as a key component. (2007) (243)
- Pyruvate decarboxylase: An indispensable enzyme for growth of Saccharomyces cerevisiae on glucose (1996) (243)
- The Two Acetyl-coenzyme A Synthetases of Saccharomyces cerevisiae Differ with Respect to Kinetic Properties and Transcriptional Regulation* (1996) (241)
- Glucose Uptake Kinetics and Transcription of HXTGenes in Chemostat Cultures of Saccharomyces cerevisiae * (1999) (227)
- When transcriptome meets metabolome: fast cellular responses of yeast to sudden relief of glucose limitation (2006) (216)
- Engineering of Saccharomyces cerevisiae for Efficient Anaerobic Alcoholic Fermentation of l-Arabinose (2007) (209)
- Directed Evolution of Pyruvate Decarboxylase-Negative Saccharomyces cerevisiae, Yielding a C2-Independent, Glucose-Tolerant, and Pyruvate-Hyperproducing Yeast (2004) (205)
- Kinetics of growth and sugar consumption in yeasts (2004) (197)
- Oxidation of reduced inorganic sulphur compounds by acidophilic thiobacilli. (1990) (185)
- Microbial export of lactic and 3-hydroxypropanoic acid: implications for industrial fermentation processes. (2004) (184)
- Two-dimensional Transcriptome Analysis in Chemostat Cultures (2005) (170)
- Identification and Characterization of Phenylpyruvate Decarboxylase Genes in Saccharomyces cerevisiae (2003) (168)
- Elimination of Glycerol Production in Anaerobic Cultures of a Saccharomyces cerevisiae Strain Engineered To Use Acetic Acid as an Electron Acceptor (2009) (160)
- Metabolic engineering of Saccharomyces cerevisiae for production of carboxylic acids: current status and challenges. (2009) (160)
- Alleviation of feedback inhibition in Saccharomyces cerevisiae aromatic amino acid biosynthesis: quantification of metabolic impact. (2008) (159)
- Regulation of carbon metabolism in chemostat cultures of Saccharomyces cerevisiae grown on mixtures of glucose and ethanol (1995) (158)
- Proteome analysis of yeast response to various nutrient limitations (2006) (153)
- Saccharomyces cerevisiae strains for second-generation ethanol production: from academic exploration to industrial implementation (2017) (148)
- Homofermentative Lactate Production Cannot Sustain Anaerobic Growth of Engineered Saccharomyces cerevisiae: Possible Consequence of Energy-Dependent Lactate Export (2004) (138)
- Identification and Characterization ofMAE1, the Saccharomyces cerevisiae Structural Gene Encoding Mitochondrial Malic Enzyme (1998) (137)
- amdSYM, a new dominant recyclable marker cassette for Saccharomyces cerevisiae (2012) (136)
- Xylose metabolism in the anaerobic fungus Piromyces sp. strain E2 follows the bacterial pathway (2003) (134)
- Effects of acetic acid on the kinetics of xylose fermentation by an engineered, xylose-isomerase-based Saccharomyces cerevisiae strain. (2009) (128)
- The Ehrlich Pathway for Fusel Alcohol Production: a Century of Research on Saccharomyces cerevisiae Metabolism (2008) (125)
- Prolonged selection in aerobic, glucose-limited chemostat cultures of Saccharomyces cerevisiae causes a partial loss of glycolytic capacity. (2005) (125)
- Under pressure: evolutionary engineering of yeast strains for improved performance in fuels and chemicals production. (2018) (124)
- Regulation of alcoholic fermentation in batch and chemostat cultures of Kluyveromyces lactis CBS 2359 (1998) (124)
- Metabolic Engineering of Glycerol Production in Saccharomyces cerevisiae (2002) (122)
- Physiological Characterization of the ARO10-Dependent, Broad-Substrate-Specificity 2-Oxo Acid Decarboxylase Activity of Saccharomyces cerevisiae (2005) (118)
- Quantitative proteomics and transcriptomics of anaerobic and aerobic yeast cultures reveals post-transcriptional regulation of key cellular processes. (2007) (116)
- Integrated multilaboratory systems biology reveals differences in protein metabolism between two reference yeast strains. (2010) (116)
- Acclimation of Saccharomyces cerevisiae to low temperature: a chemostat-based transcriptome analysis. (2007) (115)
- The Saccharomyces cerevisiae ICL2 Gene Encodes a Mitochondrial 2-Methylisocitrate Lyase Involved in Propionyl-Coenzyme A Metabolism (2000) (112)
- Generic and specific transcriptional responses to different weak organic acids in anaerobic chemostat cultures of Saccharomyces cerevisiae. (2007) (111)
- Quantitative Physiology of Saccharomyces cerevisiae at Near-Zero Specific Growth Rates (2009) (110)
- Carbon dioxide fixation by Calvin-Cycle enzymes improves ethanol yield in yeast (2013) (109)
- A new laboratory evolution approach to select for constitutive acetic acid tolerance in Saccharomyces cerevisiae and identification of causal mutations (2016) (108)
- Oxidation and Reduction of Iron by Acidophilic Bacteria (1992) (106)
- S. cerevisiae × S. eubayanus interspecific hybrid, the best of both worlds and beyond. (2015) (105)
- Effects of oxygen limitation on sugar metabolism in yeasts: a continuous-culture study of the Kluyver effect. (1994) (104)
- Replacement of the Saccharomyces cerevisiae acetyl-CoA synthetases by alternative pathways for cytosolic acetyl-CoA synthesis. (2014) (104)
- Fermentative capacity in high‐cell‐density fed‐batch cultures of baker's yeast (2000) (103)
- Genome editing in Kluyveromyces and Ogataea yeasts using a broad-host-range Cas9/gRNA co-expression plasmid (2018) (101)
- A versatile, efficient strategy for assembly of multi-fragment expression vectors in Saccharomyces cerevisiae using 60 bp synthetic recombination sequences (2013) (100)
- Engineering Acetyl Coenzyme A Supply: Functional Expression of a Bacterial Pyruvate Dehydrogenase Complex in the Cytosol of Saccharomyces cerevisiae (2014) (98)
- Engineering cytosolic acetyl-coenzyme A supply in Saccharomyces cerevisiae: Pathway stoichiometry, free-energy conservation and redox-cofactor balancing. (2016) (98)
- Engineering topology and kinetics of sucrose metabolism in Saccharomyces cerevisiae for improved ethanol yield. (2011) (96)
- Transcriptional responses of Saccharomyces cerevisiae to preferred and nonpreferred nitrogen sources in glucose-limited chemostat cultures. (2007) (96)
- Batch and continuous culture-based selection strategies for acetic acid tolerance in xylose-fermenting Saccharomyces cerevisiae. (2011) (95)
- High-Level Expression of Plasmodium vivax Apical Membrane Antigen 1 (AMA-1) in Pichia pastoris: Strong Immunogenicity in Macaca mulatta Immunized with P. vivax AMA-1 and Adjuvant SBAS2 (1999) (92)
- Energetic aspects of glucose metabolism in a pyruvate-dehydrogenase-negative mutant of Saccharomyces cerevisiae. (1994) (91)
- Polycistronic expression of a β-carotene biosynthetic pathway in Saccharomyces cerevisiae coupled to β-ionone production. (2014) (91)
- Metabolome, transcriptome and metabolic flux analysis of arabinose fermentation by engineered Saccharomyces cerevisiae. (2010) (90)
- Genome duplication and mutations in ACE2 cause multicellular, fast-sedimenting phenotypes in evolved Saccharomyces cerevisiae (2013) (89)
- Physiological and Transcriptional Responses to High Concentrations of Lactic Acid in Anaerobic Chemostat Cultures of Saccharomyces cerevisiae (2008) (88)
- Carbonic anhydrase (Nce103p): an essential biosynthetic enzyme for growth of Saccharomyces cerevisiae at atmospheric carbon dioxide pressure. (2005) (88)
- Effects of Pyruvate Decarboxylase Overproduction on Flux Distribution at the Pyruvate Branch Point inSaccharomyces cerevisiae (1998) (87)
- Genome-wide analytical approaches for reverse metabolic engineering of industrially relevant phenotypes in yeast (2012) (85)
- Exploring and dissecting genome-wide gene expression responses of Penicillium chrysogenum to phenylacetic acid consumption and penicillinG production (2009) (83)
- An internal deletion in MTH1 enables growth on glucose of pyruvate-decarboxylase negative, non-fermentative Saccharomyces cerevisiae (2012) (82)
- Substrate Specificity of Thiamine Pyrophosphate-Dependent 2-Oxo-Acid Decarboxylases in Saccharomyces cerevisiae (2012) (82)
- Catalase Overexpression Reduces Lactic Acid-Induced Oxidative Stress in Saccharomyces cerevisiae (2009) (81)
- Genome-scale analyses of butanol tolerance in Saccharomyces cerevisiae reveal an essential role of protein degradation (2013) (81)
- Construction of an hdfA Penicillium chrysogenum strain impaired in non-homologous end-joining and analysis of its potential for functional analysis studies. (2009) (80)
- Dynamics of Glycolytic Regulation during Adaptation of Saccharomyces cerevisiae to Fermentative Metabolism (2008) (78)
- A new physiological role for Pdr12p in Saccharomyces cerevisiae: export of aromatic and branched-chain organic acids produced in amino acid catabolism. (2006) (77)
- Energy coupling in Saccharomyces cerevisiae: selected opportunities for metabolic engineering. (2012) (77)
- Propionate metabolism in Saccharomyces cerevisiae: implications for the metabolon hypothesis. (1994) (76)
- Control of the Glycolytic Flux in Saccharomyces cerevisiae Grown at Low Temperature (2007) (74)
- Glucose metabolism and gluconic acid production by Acetobacter diazotrophicus (1991) (73)
- Key Process Conditions for Production of C4 Dicarboxylic Acids in Bioreactor Batch Cultures of an Engineered Saccharomyces cerevisiae Strain (2009) (72)
- Metabolic flux analysis of a glycerol‐overproducing Saccharomyces cerevisiae strain based on GC‐MS, LC‐MS and NMR‐derived 13C‐labelling data (2007) (69)
- Chromosomal Copy Number Variation in Saccharomyces pastorianus Is Evidence for Extensive Genome Dynamics in Industrial Lager Brewing Strains (2015) (69)
- Physiological and Transcriptional Responses of Saccharomyces cerevisiae to Zinc Limitation in Chemostat Cultures (2007) (68)
- Modulating the distribution of fluxes among respiration and fermentation by overexpression of HAP4 in Saccharomyces cerevisiae. (2001) (68)
- Chemostat-based micro-array analysis in baker's yeast. (2009) (67)
- Physiological and genome-wide transcriptional responses of Saccharomyces cerevisiae to high carbon dioxide concentrations. (2005) (66)
- Pyruvate Decarboxylase Catalyzes Decarboxylation of Branched-Chain 2-Oxo Acids but Is Not Essential for Fusel Alcohol Production by Saccharomyces cerevisiae (1998) (66)
- One-step assembly and targeted integration of multigene constructs assisted by the I-SceI meganuclease in Saccharomyces cerevisiae (2013) (62)
- Combinatorial effects of environmental parameters on transcriptional regulation in Saccharomyces cerevisiae: A quantitative analysis of a compendium of chemostat-based transcriptome data (2009) (62)
- Functional analysis of structural genes for NAD+‐dependent formate dehydrogenase in Saccharomyces cerevisiae (2002) (61)
- Mutations in PMR1 stimulate xylose isomerase activity and anaerobic growth on xylose of engineered Saccharomyces cerevisiae by influencing manganese homeostasis (2017) (61)
- Comparative genotyping of the Saccharomyces cerevisiae laboratory strains S288C and CEN.PK113-7D using oligonucleotide microarrays. (2003) (61)
- Evolutionary engineering to enhance starter culture performance in food fermentations. (2015) (60)
- Increasing free-energy (ATP) conservation in maltose-grown Saccharomyces cerevisiae by expression of a heterologous maltose phosphorylase. (2011) (60)
- Transcription factor control of growth rate dependent genes in Saccharomyces cerevisiae: A three factor design (2008) (59)
- Connecting central carbon and aromatic amino acid metabolisms to improve de novo 2-phenylethanol production in Saccharomyces cerevisiae. (2019) (59)
- Exploiting combinatorial cultivation conditions to infer transcriptional regulation (2007) (58)
- Prolonged Maltose-Limited Cultivation of Saccharomyces cerevisiae Selects for Cells with Improved Maltose Affinity and Hypersensitivity (2004) (57)
- Physiological and genetic engineering of cytosolic redox metabolism in Saccharomyces cerevisiae for improved glycerol production. (2006) (57)
- Saccharomyces cerevisiae SFP1: at the crossroads of central metabolism and ribosome biogenesis. (2008) (56)
- Phosphoenolpyruvate Carboxykinase as the Sole Anaplerotic Enzyme in Saccharomyces cerevisiae (2010) (56)
- Engineering of Penicillium chrysogenum for fermentative production of a novel carbamoylated cephem antibiotic precursor. (2009) (56)
- Reductions of 3-oxo Esters by Baker's Yeast: Current Status (1998) (55)
- Oxidation of reduced sulphur compounds by intact cells of Thiobacillus acidophilus (1992) (54)
- Metabolic responses of pyruvate decarboxylase-negative Saccharomyces cerevisiae to glucose excess (1997) (53)
- Energetic limits to metabolic flexibility: responses of Saccharomyces cerevisiae to glucose-galactose transitions. (2009) (52)
- Anaplerotic Role for Cytosolic Malic Enzyme in Engineered Saccharomyces cerevisiae Strains (2010) (52)
- Enzymic analysis of NADPH metabolism in beta-lactam-producing Penicillium chrysogenum: presence of a mitochondrial NADPH dehydrogenase. (2006) (52)
- Vitamin requirements and biosynthesis in Saccharomyces cerevisiae (2020) (51)
- Industrial Relevance of Chromosomal Copy Number Variation in Saccharomyces Yeasts (2017) (51)
- Effects of growth conditions on mitochondrial morphology inSaccharomyces cerevisiae (2004) (50)
- Two mechanisms for oxidation of cytosolic NADPH by Kluyveromyces lactis mitochondria (2002) (49)
- Transcriptome-Based Characterization of Interactions between Saccharomyces cerevisiae and Lactobacillus delbrueckii subsp. bulgaricus in Lactose-Grown Chemostat Cocultures (2013) (47)
- Overproduction of Threonine Aldolase Circumvents the Biosynthetic Role of Pyruvate Decarboxylase in Glucose-Limited Chemostat Cultures of Saccharomyces cerevisiae (2003) (47)
- Engineering NADH metabolism in Saccharomyces cerevisiae: formate as an electron donor for glycerol production by anaerobic, glucose-limited chemostat cultures. (2006) (46)
- Cellular responses of Saccharomyces cerevisiae at near-zero growth rates: transcriptome analysis of anaerobic retentostat cultures (2011) (46)
- The Saccharomyces cerevisiae acetyl-coenzyme A synthetase encoded by the ACS1 gene, but not the ACS2-encoded enzyme, is subject to glucose catabolite inactivation. (1997) (46)
- Pichia pastoris Exhibits High Viability and a Low Maintenance Energy Requirement at Near-Zero Specific Growth Rates (2016) (45)
- Physiology of the fuel ethanol strain Saccharomyces cerevisiae PE-2 at low pH indicates a context-dependent performance relevant for industrial applications. (2014) (45)
- Contribution of the Saccharomyces cerevisiae transcriptional regulator Leu3p to physiology and gene expression in nitrogen- and carbon-limited chemostat cultures. (2005) (44)
- Involvement of Vacuolar Sequestration and Active Transport in Tolerance of Saccharomycescerevisiae to Hop Iso-α-Acids (2009) (43)
- Improving ethanol yield in acetate-reducing Saccharomyces cerevisiae by cofactor engineering of 6-phosphogluconate dehydrogenase and deletion of ALD6 (2016) (43)
- Functional analysis and transcriptional regulation of two orthologs of ARO10, encoding broad-substrate-specificity 2-oxo-acid decarboxylases, in the brewing yeast Saccharomyces pastorianus CBS1483. (2013) (42)
- Oxygen Requirements of the Food Spoilage YeastZygosaccharomyces bailii in Synthetic and Complex Media (2001) (41)
- The Penicillium chrysogenum aclA gene encodes a broad-substrate-specificity acyl-coenzyme A ligase involved in activation of adipic acid, a side-chain precursor for cephem antibiotics. (2010) (41)
- Laboratory evolution for forced glucose-xylose co-consumption enables identification of mutations that improve mixed-sugar fermentation by xylose-fermenting Saccharomyces cerevisiae (2018) (41)
- Laboratory evolution of new lactate transporter genes in a jen1Δ mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole-genome resequencing and transcriptome analysis. (2012) (40)
- Formate as an Auxiliary Substrate for Glucose-Limited Cultivation of Penicillium chrysogenum: Impact on Penicillin G Production and Biomass Yield (2007) (40)
- Laboratory evolution of new lactate transporter genes in a jen1Δ mutant of Saccharomyces cerevisiae and their identification as ADY2 alleles by whole-genome resequencing and transcriptome analysis (2012) (40)
- An atypical PMR2 locus is responsible for hypersensitivity to sodium and lithium cations in the laboratory strain Saccharomyces cerevisiae CEN.PK113-7D. (2009) (39)
- Maintenance-energy requirements and robustness of Saccharomyces cerevisiae at aerobic near-zero specific growth rates (2016) (39)
- Physiological and Transcriptional Responses of Different Industrial Microbes at Near-Zero Specific Growth Rates (2015) (39)
- Revisiting the role of yeast Sfp1 in ribosome biogenesis and cell size control: a chemostat study. (2008) (38)
- Alternative reactions at the interface of glycolysis and citric acid cycle in Saccharomyces cerevisiae (2016) (37)
- Influence of the ethanol and glucose supply rate on the rate and enantioselectivity of 3-oxo ester reduction by baker's yeast. (2001) (37)
- The diversity of protein turnover and abundance under nitrogen-limited steady-state conditions in Saccharomyces cerevisiae. (2011) (37)
- Identity of the Growth-Limiting Nutrient Strongly Affects Storage Carbohydrate Accumulation in Anaerobic Chemostat Cultures of Saccharomyces cerevisiae (2009) (37)
- Optimizing anaerobic growth rate and fermentation kinetics in Saccharomyces cerevisiae strains expressing Calvin-cycle enzymes for improved ethanol yield (2018) (36)
- Structural, Physiological and Regulatory Analysis of Maltose Transporter Genes in Saccharomyces eubayanus CBS 12357T (2018) (36)
- Hydrolytic activity in baker's yeast limits the yield of asymmetric 3-oxo ester reduction. (2000) (36)
- New insights into the Saccharomyces cerevisiae fermentation switch: Dynamic transcriptional response to anaerobicity and glucose-excess (2008) (35)
- Deletion of the Saccharomyces cerevisiae ARO8 gene, encoding an aromatic amino acid transaminase, enhances phenylethanol production from glucose (2014) (35)
- A Minimal Set of Glycolytic Genes Reveals Strong Redundancies in Saccharomyces cerevisiae Central Metabolism (2015) (34)
- Anaerobic homolactate fermentation with Saccharomyces cerevisiae results in depletion of ATP and impaired metabolic activity. (2009) (33)
- Extreme calorie restriction and energy source starvation in Saccharomyces cerevisiae represent distinct physiological states. (2011) (33)
- Hxt-Carrier-Mediated Glucose Efflux upon Exposure of Saccharomyces cerevisiae to Excess Maltose (2002) (33)
- Laboratory Evolution of a Saccharomyces cerevisiae × S. eubayanus Hybrid Under Simulated Lager-Brewing Conditions (2019) (32)
- Galacturonic Acid Inhibits the Growth of Saccharomyces cerevisiae on Galactose, Xylose, and Arabinose (2012) (32)
- Evolutionary Engineering in Chemostat Cultures for Improved Maltotriose Fermentation Kinetics in Saccharomyces pastorianus Lager Brewing Yeast (2017) (32)
- Metabolic engineering strategies for optimizing acetate reduction, ethanol yield and osmotolerance in Saccharomyces cerevisiae (2017) (32)
- Pathway swapping: Toward modular engineering of essential cellular processes (2016) (32)
- Elimination of sucrose transport and hydrolysis in Saccharomyces cerevisiae: a platform strain for engineering sucrose metabolism (2017) (32)
- Physiological characterisation of a pyruvate-carboxylase-negative Saccharomyces cerevisiae mutant in batch and chemostat cultures (1998) (31)
- Metabolic engineering of β-oxidation in Penicillium chrysogenum for improved semi-synthetic cephalosporin biosynthesis. (2012) (31)
- Long‐term adaptation of Saccharomyces cerevisiae to the burden of recombinant insulin production (2013) (31)
- Metabolism of tetrathionate in Thiobacillus acidophilus (1993) (31)
- Allele-specific genome editing using CRISPR–Cas9 is associated with loss of heterozygosity in diploid yeast (2018) (30)
- Growth-rate dependency of de novo resveratrol production in chemostat cultures of an engineered Saccharomyces cerevisiae strain (2015) (30)
- Evolutionary engineering of a glycerol-3-phosphate dehydrogenase-negative, acetate-reducing Saccharomyces cerevisiae strain enables anaerobic growth at high glucose concentrations (2013) (30)
- Efficient simultaneous excision of multiple selectable marker cassettes using I-SceI-induced double-strand DNA breaks in Saccharomyces cerevisiae. (2014) (30)
- The genome sequence of the popular hexose-transport-deficient Saccharomyces cerevisiae strain EBY.VW4000 reveals LoxP/Cre-induced translocations and gene loss. (2015) (30)
- Fermentation of glucose-xylose-arabinose mixtures by a synthetic consortium of single-sugar-fermenting Saccharomyces cerevisiae strains. (2018) (29)
- Toward pectin fermentation by Saccharomyces cerevisiae: expression of the first two steps of a bacterial pathway for D-galacturonate metabolism. (2012) (29)
- Similar temperature dependencies of glycolytic enzymes: an evolutionary adaptation to temperature dynamics? (2012) (29)
- A toolkit for rapid CRISPR-SpCas9 assisted construction of hexose-transport-deficient Saccharomyces cerevisiae strains (2018) (28)
- Transcriptional responses to glucose in Saccharomyces cerevisiae strains lacking a functional protein kinase A (2011) (28)
- Correlation between transcript profiles and fitness of deletion mutants in anaerobic chemostat cultures of Saccharomyces cerevisiae (2007) (28)
- Laboratory Evolution of a Biotin-Requiring Saccharomyces cerevisiae Strain for Full Biotin Prototrophy and Identification of Causal Mutations (2017) (27)
- Resolving Phenylalanine Metabolism Sheds Light on Natural Synthesis of Penicillin G in Penicillium chrysogenum (2011) (27)
- To divide or not to divide: a key role of Rim15 in calorie-restricted yeast cultures. (2014) (27)
- Metabolic flux analysis of a glycerol-overproducing Saccharomyces cerevisiae strain based on GC-MS, LC-MS and NMR-derived C-labelling data. (2007) (27)
- The Penicillium chrysogenum transporter PcAraT enables high-affinity, glucose-insensitive l-arabinose transport in Saccharomyces cerevisiae (2018) (27)
- In vivo recombination of Saccharomyces eubayanus maltose-transporter genes yields a chimeric transporter that enables maltotriose fermentation (2018) (27)
- Lager-brewing yeasts in the era of modern genetics (2019) (26)
- Selection of Pof- Saccharomyces eubayanus Variants for the Construction of S. cerevisiae × S. eubayanus Hybrids With Reduced 4-Vinyl Guaiacol Formation (2018) (26)
- Oxygen availability strongly affects chronological lifespan and thermotolerance in batch cultures of Saccharomyces cerevisiae (2015) (26)
- A CRISPR/Cas9‐based exploration into the elusive mechanism for lactate export in Saccharomyces cerevisiae (2017) (25)
- Nanoarrays: a method for performing enzymatic assays. (2004) (24)
- Excessive by-product formation: A key contributor to low isobutanol yields of engineered Saccharomyces cerevisiae strains (2016) (23)
- Functional characterization of the oxaloacetase encoding gene and elimination of oxalate formation in the β-lactam producer Penicillium chrysogenum. (2011) (22)
- Requirements for Carnitine Shuttle-Mediated Translocation of Mitochondrial Acetyl Moieties to the Yeast Cytosol (2016) (22)
- How to set up collaborations between academia and industrial biotech companies (2015) (22)
- Coordination of sucrose uptake and respiration in the yeast Debaryomyces yamadae. (1995) (21)
- Functional expression of a heterologous nickel-dependent, ATP-independent urease in Saccharomyces cerevisiae. (2015) (21)
- Combined engineering of disaccharide transport and phosphorolysis for enhanced ATP yield from sucrose fermentation in Saccharomyces cerevisiae. (2018) (21)
- Novel Pathway for Alcoholic Fermentation of δ-Gluconolactone in the Yeast Saccharomyces bulderi (2002) (21)
- Physiological characterization and fed-batch production of an extracellular maltase of Schizosaccharomyces pombe CBS 356. (2006) (20)
- An alternative, arginase-independent pathway for arginine metabolism in Kluyveromyces lactis involves guanidinobutyrase as a key enzyme (2014) (20)
- Mechanism of glucose and maltose transport in plasma-membrane vesicles from the yeast Candida utilis. (1997) (19)
- Engineering and Analysis of a Saccharomyces cerevisiae Strain That Uses Formaldehyde as an Auxiliary Substrate (2008) (19)
- The Low Biomass Yields of the Acetic Acid Bacterium Acetobacter pasteurianus Are Due to a Low Stoichiometry of Respiration-Coupled Proton Translocation (1997) (18)
- Laboratory evolution of a glucose-phosphorylation-deficient, arabinose-fermenting S. cerevisiae strain reveals mutations in GAL2 that enable glucose-insensitive l-arabinose uptake (2018) (16)
- Heterotrophic growth of Thiobacillus acidophilus in batch and chemostat cultures (2004) (16)
- Use of chemostat data for modelling extracellular-inulinase production by Kluyveromyces marxianus in a high-cell-density fed-batch process (1995) (16)
- Adaptive Laboratory Evolution and Reverse Engineering of Single-Vitamin Prototrophies in Saccharomyces cerevisiae (2020) (15)
- Replacement of the initial steps of ethanol metabolism in Saccharomyces cerevisiae by ATP-independent acetylating acetaldehyde dehydrogenase (2016) (15)
- Himalayan Saccharomyces eubayanus Genome Sequences Reveal Genetic Markers Explaining Heterotic Maltotriose Consumption by Saccharomyces pastorianus Hybrids (2019) (15)
- Functional analysis of the Agrobacterium tumefaciens octopine Ti-plasmid left and right T-region border fragments (2004) (14)
- Anaerobic growth of Saccharomyces cerevisiae CEN.PK113-7D does not depend on synthesis or supplementation of unsaturated fatty acids (2019) (14)
- Effect of High Product Concentration in a Dual Fed-batch Asymmetric 3-oxo Ester Reduction by Baker's Yeast (2002) (14)
- Proteome adaptation of Saccharomyces cerevisiae to severe calorie restriction in Retentostat cultures. (2014) (14)
- Comparative assessment of native and heterologous 2-oxo acid decarboxylases for application in isobutanol production by Saccharomyces cerevisiae (2015) (13)
- Metabolic engineering, synthetic biology and systems biology. (2012) (12)
- The discovery of beta-galactosidase. (1989) (11)
- A Novel D-Galacturonate Fermentation Pathway in Lactobacillus suebicus Links Initial Reactions of the Galacturonate-Isomerase Route With the Phosphoketolase Pathway (2020) (11)
- Physiological responses of Saccharomyces cerevisiae to industrially relevant conditions: Slow growth, low pH, and high CO2 levels (2020) (11)
- Squalene-Tetrahymanol Cyclase Expression Enables Sterol-Independent Growth of Saccharomyces cerevisiae (2020) (11)
- Galacturonate Metabolism in Anaerobic Chemostat Enrichment Cultures: Combined Fermentation and Acetogenesis by the Dominant sp. nov. “Candidatus Galacturonibacter soehngenii” (2018) (11)
- Improving Industrially Relevant Phenotypic Traits by Engineering Chromosome Copy Number in Saccharomyces pastorianus (2020) (11)
- Reassessment of requirements for anaerobic xylose fermentation by engineered, non-evolved Saccharomyces cerevisiae strains (2018) (11)
- Functional characterization of a Penicillium chrysogenum mutanase gene induced upon co-cultivation with Bacillus subtilis (2014) (10)
- In vivo analysis of Saccharomyces cerevisiae plasma membrane ATPase Pma1p isoforms with increased in vitro H+/ATP stoichiometry (2012) (10)
- Exploiting the Diversity of Saccharomycotina Yeasts To Engineer Biotin-Independent Growth of Saccharomyces cerevisiae (2020) (9)
- Evaluation of a novel cloud-based software platform for structured experiment design and linked data analytics (2018) (9)
- Quantitative Physiology of Non-Energy-Limited Retentostat Cultures of Saccharomyces cerevisiae at Near-Zero Specific Growth Rates (2019) (8)
- Phenotype-Independent Isolation of Interspecies Saccharomyces Hybrids by Dual-Dye Fluorescent Staining and Fluorescence-Activated Cell Sorting (2019) (8)
- Engineering the thermotolerant industrial yeast Kluyveromyces marxianus for anaerobic growth (2021) (8)
- Identification of oxygen-independent pathways for pyridine-nucleotide and Coenzyme-A synthesis in anaerobic fungi by expression of candidate genes in yeast (2020) (7)
- Extreme calorie restriction in yeast retentostats induces uniform non-quiescent growth arrest. (2017) (7)
- Quantitative Physiology of Saccharomyces cerevisiae at Near-Zero Specific Growth Rates (2009) (7)
- Pathway engineering strategies for improved product yield in yeast-based industrial ethanol production (2022) (7)
- Engineering the thermotolerant industrial yeast Kluyveromyces marxianus for anaerobic growth. (2021) (7)
- Physiological and Transcriptional Responses of Anaerobic Chemostat Cultures of Saccharomyces cerevisiae Subjected to Diurnal Temperature Cycles (2014) (7)
- Uncoupling growth and succinic acid production in an industrial Saccharomyces cerevisiae strain (2020) (7)
- Engineering heterologous molybdenum-cofactor-biosynthesis and nitrate-assimilation pathways enables nitrate utilization by Saccharomyces cerevisiae. (2021) (6)
- “Candidatus Galacturonibacter soehngenii” Shows Acetogenic Catabolism of Galacturonic Acid but Lacks a Canonical Carbon Monoxide Dehydrogenase/Acetyl-CoA Synthase Complex (2020) (6)
- Laboratory evolution of a Saccharomyces cerevisiae x S. eubayanus hybrid under simulated lager-brewing conditions: genetic diversity and phenotypic convergence (2018) (6)
- Laboratory evolution and physiological analysis of Saccharomyces cerevisiae strains dependent on sucrose uptake via the Phaseolus vulgaris Suf1 transporter (2018) (6)
- Editorial overview: Energy biotechnology. (2015) (6)
- Class-II dihydroorotate dehydrogenases from three phylogenetically distant fungi support anaerobic pyrimidine biosynthesis (2021) (5)
- Functional expression of a bacterial α-ketoglutarate dehydrogenase in the cytosol of Saccharomyces cerevisiae. (2019) (5)
- Critical parameters and procedures for anaerobic cultivation of yeasts in bioreactors and anaerobic chambers (2021) (5)
- Contribution of Complex I NADH Dehydrogenase to Respiratory Energy Coupling in Glucose-Grown Cultures of Ogataea parapolymorpha (2020) (5)
- STRUCTURE AND REACTION MECHANISM OF LIPOAMIDE DEHYDROGENASE FROM PIG HEART (1972) (5)
- Allele-specific genome editing using CRISPR-Cas9 causes off-target mutations in diploid yeast (2018) (4)
- A squalene–hopene cyclase in Schizosaccharomyces japonicus represents a eukaryotic adaptation to sterol-limited anaerobic environments (2021) (4)
- Maltotriose consumption by hybrid Saccharomyces pastorianus is heterotic and results from regulatory cross-talk between parental sub-genomes (2019) (4)
- The genome sequences of Himalayan Saccharomyces eubayanus revealed genetic markers explaining heterotic maltotriose consumption by hybrid Saccharomyces pastorianus. (2019) (4)
- Involvement of Snf7p and Rim101p in the transcriptional regulation of TIR1 and other anaerobically upregulated genes in Saccharomyces cerevisiae. (2010) (3)
- Human acylphosphatase cannot replace phosphoglycerate kinase in Saccharomyces cerevisiae (2001) (3)
- A squalene-hopene cyclase in Schizosaccharomyces japonicus represents a eukaryotic adaptation to sterol-independent anaerobic growth (2021) (2)
- Energetics of mixotrophic and autotrophic C1-metabolism by Thiobacillus acidophilus (2004) (2)
- Metabolic engineering ofSaccharomyces cerevisiae for production of carboxylic acids : current statusand challenges (2009) (2)
- A Simulator-Assisted Workshop for Teaching Chemostat Cultivation in Academic Classes on Microbial Physiology † (2017) (2)
- Identification of Oxygen-Independent Pathways for Pyridine Nucleotide and Coenzyme A Synthesis in Anaerobic Fungi by Expression of Candidate Genes in Yeast (2021) (2)
- Metabolic engineering of xylose fermenting eukaryotic cells. Verleend. Aanvrager: TU Delft (2007) (2)
- An engineered non-oxidative glycolytic bypass based on Calvin-cycle enzymes enables anaerobic co-fermentation of glucose and sorbitol by Saccharomyces cerevisiae (2022) (2)
- The future of sustainable fish production lies in vaccine research and development and revised regulatory measures (2012) (1)
- Respiratory reoxidation of NADH is a key contributor to high oxygen requirements of oxygen-limited cultures of Ogataea parapolymorpha (2022) (1)
- Physiology of the acidophilic thiobacilli (1991) (1)
- Functional characterization of a Penicillium chrysogenum mutanase gene induced upon co-cultivation with Bacillus subtilis (2014) (1)
- Re-oxidation of cytosolic NADH is a major contributor to the high oxygen requirements of the thermotolerant yeast Ogataea parapolymorpha in oxygen-limited cultures (2021) (1)
- Engineering oxygen-independent biotin biosynthesis in Saccharomyces cerevisiae. (2021) (1)
- Elimination of aromatic fusel alcohols as by-products of Saccharomyces cerevisiae strains engineered for phenylpropanoid production by 2-oxo-acid decarboxylase replacement (2021) (0)
- Engineering challenges in the large scale purification of HSA using SMB technology (1999) (0)
- Evolutionary and reverse metabolic engineering of Saccharomyces cerevisiae (2014) (0)
- Mutual responses of lactic acid bacteria and yeasts in industrial fermentations (2011) (0)
- Delft University of Technology Phenotype-independent isolation of interspecies Saccharomyces hybrids by dual-dye fluorescent staining and fluorescence-activated cell sorting (2019) (0)
- Exploiting the Diversity of Saccharomycotina Yeasts To Engineer Biotin-Independent Growth of <named-content content-type='genus-species'>Saccharomyces cerevisiae</named-content> (2020) (0)
- Quantitative Physiology of Non-Energy-Limited Retentostat Cultures of <named-content content-type='genus-species'>Saccharomyces cerevisiae</named-content> at Near-Zero Specific Growth Rates (2019) (0)
- The discovery of j3-galactosidase (2002) (0)
- Evolved Saccharomyces cerevisiae grows three times faster than the parental strain in unfavourable medium (2015) (0)
- Transcriptome and proteome analysis of Saccharomyces cerevisiae metabolic response to glucose and ethanol as carbon sources (2004) (0)
- Crystal ball - 2013 : Recombination-based DNA assembly in metabolic engineering: a goodbye to old workhorses? (2012) (0)
- Critical role of metals in biochemical properties of xylose isomerase (2017) (0)
- Delft University of Technology Anaerobic growth of Saccharomyces cerevisiae CEN.PK113-7D does not depend on synthesis or supplementation of unsaturated fatty acids (2019) (0)
- Maltose metabolism under simulated dough conditions in Saccharomyces cerevisiae (2001) (0)
- Increasing ATP conservation in maltose consuming yeast, a challenge for industrial organic acid production in non-aerated reactors (2014) (0)
- Functional characterization of ILV6 in S. cerevisiae (2001) (0)
- Involvement of Vacuolar Sequestration and Active Transport in Tolerance of Saccharomyces cerevisiae to Hop Iso- (cid:1) -Acids (cid:1) †¶ (2009) (0)
- Evaluating a novel cloud-based software platform for linking data and structured experimental designs (2018) (0)
- University of Groningen Mutations in PMR 1 stimulate xylose isomerase activity and anaerobic growth on xylose of engineered Saccharomyces cerevisiae by influencing manganese homeostasis (2017) (0)
- AMA-1 and Adjuvant SBAS 2 P . vivax Immunized with Macaca mulatta in : Strong Immunogenicity Pichia pastoris in Apical Membrane Antigen 1 ( AMA-1 ) vivax Plasmodium High-Level Expression of (1998) (0)
- DNA-Microarray Analysis Transcriptomics in chemostat cultures of Saccharomyces cerevisiae : Identification of ‘ signature transcripts ’ responding to environmental changes-A diagnostic tool (2005) (0)
- fermenting S . cerevisiae strain reveals mutations in GAL 2 that enable glucose-insensitive l-arabinose uptake (2018) (0)
- and Applied Research Auxotrophic Yeast Strains in Fundamental (2002) (0)
- Metabolic £ uxanalysis ofa glycerol-overproducingSaccharomyces cerevisiae strain based onGC-MS , LC-MSandNMR-derived 13 C-labelling data (2007) (0)
- Correction to: Class‑II dihydroorotate dehydrogenases from three phylogenetically distant fungi support anaerobic pyrimidine biosynthesis (2021) (0)
- Metabolism Lyase Involved in Propionyl-Coenzyme A Encodes a Mitochondrial 2-Methylisocitrate Gene Saccharomyces cerevisiae ICL 2 The (2000) (0)
- Dynamics of Glycolytic Regulation during Adaptation of <italic toggle='yes'>Saccharomyces cerevisiae</italic> to Fermentative Metabolism <xref ref-type='fn' rid='FN1'>â•€</xref> (2008) (0)
- Identification of fungal dihydrouracil-oxidase genes by expression in Saccharomyces cerevisiae (2022) (0)
- In vivo analysis of Saccharomyces cerevisiae plasma membrane ATPase Pma1p isoforms with increased in vitro H+/ATP stoichiometry (2012) (0)
- Resolving Phenylalanine Metabolism Sheds Light on Natural Synthesis of Penicillin G in Penicillium chrysogenum (2013) (0)
- Industrial Biotechnology: Drive my car (2006) (0)
- Class-II dihydroorotate dehydrogenases from three phylogenetically distant fungi support anaerobic pyrimidine biosynthesis (2021) (0)
- Novel Pathway for Alcoholic Fermentation of (cid:2) -Gluconolactone in the Yeast Saccharomyces bulderi (2001) (0)
- 104th Event of the European Federation of Biotechnology “Physiology of Yeasts and Filamentous Fungi” (2001) (0)
- Research letterMetabolism of tetrathionate in Thiobacillus acidophilus (1993) (0)
- Metabolic Engineering and Fermentation Technology (1998) (0)
- Subjected to Diurnal Temperature Cycles Cultures of Saccharomyces cerevisiae Responses of Anaerobic Chemostat Physiological and Transcriptional (2014) (0)
- T-Region Transfer from Agrobacterium Tumefaciens to Plant Cells: Functional Characterization of Border Repeats (1986) (0)
- Vertical genomics in baker's yeast: Adaptation of respiring cells to anaerobic sugar-excess conditions (2006) (0)
- Correction to: Class‑II dihydroorotate dehydrogenases from three phylogenetically distant fungi support anaerobic pyrimidine biosynthesis (2021) (0)
- An alternative, arginase-independent pathway for arginine metabolism inKluyveromyces lactisinvolves guanidinobutyrase as a key enzyme: Arginine metabolism inK. lactis (2014) (0)
- Yeasts and bacteria in sourdough: a case of mutualism (2011) (0)
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