James Tiedje

Q: What Schools Are Affiliated With James Tiedje

James Tiedje is affiliated with the following schools: Nagaoka University of Technology, Hunan Agricultural University, Iowa State University, Utah State University, University of California, Davis, Institute of Soil Science, Michigan State University, Cornell University, Yonsei University, Northwest A&F University

James Tiedje's AcademicInfluence.com Rankings

James Tiedje

Biology

#1159

World Rank

#1971

Historical Rank

#599

USA Rank

Microbiology

#26

World Rank

#39

Historical Rank

#17

USA Rank

biology Degrees

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Biology

James Tiedje's Degrees

PhD Microbiology University of California, Davis
Masters Microbiology University of California, Davis
Bachelors Microbiology University of California, Davis

Why Is James Tiedje Influential?

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According to Wikipedia, James Michael Tiedje is University Distinguished Professor and the director of the NSF Center for Microbial Ecology at Michigan State University, as well as a Professor of Crop and Soil Sciences and Microbiology. He was elected to the National Academy of Sciences in 2003 and served as president of the American Society for Microbiology from 2004 to 2005. The Center he directed developed novel methods for microbial community analysis that have greatly expanded knowledge about complex microbial communities in soil, sediments, engineered systems, the oceans and within animals. He also created experiments to detect life on Mars that were carried aboard the Viking Mars landers.

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James Tiedje's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Naïve Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy (2007) (15277)
The Ribosomal Database Project: improved alignments and new tools for rRNA analysis (2008) (4646)
DNA-DNA hybridization values and their relationship to whole-genome sequence similarities. (2007) (3404)
Ribosomal Database Project: data and tools for high throughput rRNA analysis (2013) (3268)
DNA recovery from soils of diverse composition (1996) (2840)
Diverse and abundant antibiotic resistance genes in Chinese swine farms (2013) (1675)
Genomic insights that advance the species definition for prokaryotes. (2005) (1656)
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis (2004) (1556)
The RDP-II (Ribosomal Database Project) (2001) (1514)
The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy (2003) (1506)
The ribosomal database project (RDP-II): introducing myRDP space and quality controlled public data (2006) (1189)
A new version of the RDP (Ribosomal Database Project) (1999) (944)
Towards environmental systems biology of Shewanella (2008) (797)
Using the class 1 integron-integrase gene as a proxy for anthropogenic pollution (2014) (788)
Metagenomic and network analysis reveal wide distribution and co-occurrence of environmental antibiotic resistance genes (2015) (740)
Towards a Genome-Based Taxonomy for Prokaryotes (2005) (724)
In-feed antibiotic effects on the swine intestinal microbiome (2012) (714)
Phases of denitrification following oxygen depletion in soil (1979) (683)
Revealing the Bacterial Butyrate Synthesis Pathways by Analyzing (Meta)genomic Data (2014) (682)
Direct measurement of oxygen profiles and denitrification rates in soil aggregates (1985) (679)
Spatial and Resource Factors Influencing High Microbial Diversity in Soil (2002) (662)
The RDP (Ribosomal Database Project) continues (2000) (662)
Interactions between Aboveground and Belowground Biodiversity in Terrestrial Ecosystems: Patterns, Mechanisms, and Feedbacks (2000) (647)
The Planned Introduction of Genetically Engineered Organisms: Ecological Considerations and Recommendations (1989) (625)
DNA Probe Method for the Detection of Specific Microorganisms in the Soil Bacterial Community (1988) (616)
Microbial reductive dehalogenation. (1992) (612)
Kinetic Explanation for Accumulation of Nitrite, Nitric Oxide, and Nitrous Oxide During Bacterial Denitrification (1981) (593)
Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications (2011) (588)
The bacterial species definition in the genomic era (2006) (576)
Nitrite Reductase Genes (nirK andnirS) as Functional Markers To Investigate Diversity of Denitrifying Bacteria in Pacific Northwest Marine Sediment Communities (2000) (513)
General method for determining anaerobic biodegradation potential (1984) (500)
Nitrous Oxide from Soil Denitrification: Factors Controlling Its Biological Production (1980) (498)
Biogeography and Degree of Endemicity of Fluorescent Pseudomonas Strains in Soil (2000) (488)
FunGene: the functional gene pipeline and repository (2013) (486)
Stochasticity, succession, and environmental perturbations in a fluidic ecosystem (2014) (462)
Opening the black box of soil microbial diversity (1999) (461)
Development and Evaluation of Functional Gene Arrays for Detection of Selected Genes in the Environment (2001) (434)
Denitrification: ecological niches, competition and survival (2004) (433)
Trends between gene content and genome size in prokaryotic species with larger genomes. (2004) (433)
Conversion of the Amazon rainforest to agriculture results in biotic homogenization of soil bacterial communities (2012) (428)
Evaluation of PCR-Generated Chimeras, Mutations, and Heteroduplexes with 16S rRNA Gene-Based Cloning (2001) (426)
Genome Project Standards in a New Era of Sequencing (2009) (422)
Multiscale responses of microbial life to spatial distance and environmental heterogeneity in a patchy ecosystem (2007) (393)
Simultaneous Recovery of RNA and DNA from Soils and Sediments (2001) (389)
Methylocella palustris gen. nov., sp. nov., a new methane-oxidizing acidophilic bacterium from peat bogs, representing a novel subtype of serine-pathway methanotrophs. (2000) (386)
Flexible Community Structure Correlates with Stable Community Function in Methanogenic Bioreactor Communities Perturbed by Glucose (2000) (361)
GENETICALLY ENGINEERED ORGANISMS AND THE ENVIRONMENT: CURRENT STATUS AND RECOMMENDATIONS1 (2005) (357)
Characterization and Description of Anaeromyxobacter dehalogenans gen. nov., sp. nov., an Aryl-Halorespiring Facultative Anaerobic Myxobacterium (2002) (356)
Spatial Variability in a Successional Plant Community: Patterns of Nitrogen Availability (1988) (356)
Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. (2007) (348)
Numerically Dominant Denitrifying Bacteria from World Soils (1977) (348)
Isolation and Partial Characterization of Bacteria in an Anaerobic Consortium That Mineralizes 3-Chlorobenzoic Acid (1984) (336)
Global diversity and biogeography of bacterial communities in wastewater treatment plants (2019) (335)
Bioreactive Barriers: A Comparison of Bioaugmentation and Biostimulation for Chlorinated Solvent Remediation (2003) (332)
Reductive Dechlorination of Polychlorinated Biphenyls by Anaerobic Microorganisms from Sediments (1988) (331)
Burkholderia xenovorans LB400 harbors a multi-replicon, 9.73-Mbp genome shaped for versatility (2006) (327)
The Microbial Genomes Atlas (MiGA) webserver: taxonomic and gene diversity analysis of Archaea and Bacteria at the whole genome level (2018) (324)
Perspectives on measurement of denitrification in the field including recommended protocols for acetylene based methods (1989) (314)
Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species (2011) (311)
Bacterial community fingerprinting of amplified 16S and 16–23S ribosomal DNA gene sequences and restriction endonuclease analysis(ARDRA) (1995) (303)
Community Structure of Denitrifiers, Bacteria, and Archaea along Redox Gradients in Pacific Northwest Marine Sediments by Terminal Restriction Fragment Length Polymorphism Analysis of Amplified Nitrite Reductase (nirS) and 16S rRNA Genes (2001) (302)
Molecular Evidence for the Broad Distribution of Anaerobic Ammonium-Oxidizing Bacteria in Freshwater and Marine Sediments (2006) (300)
Denitrification in north temperate forest soils: Spatial and temporal patterns at the landscape and seasonal scales (1989) (295)
A genomic catalog of Earth’s microbiomes (2020) (295)
THE VERNAL DAM: PLANT-MICROBE COMPETITION FOR NITROGEN IN NORTHERN HARDWOOD FORESTS' (1990) (295)
Metagenomic insights into evolution of a heavy metal-contaminated groundwater microbial community (2010) (291)
Fraction of Electrons Consumed in Electron Acceptor Reduction and Hydrogen Thresholds as Indicators of Halorespiratory Physiology (1999) (290)
Biogeography: An Emerging Cornerstone for Understanding Prokaryotic Diversity, Ecology, and Evolution (2007) (289)
16S rRNA Gene-Based Detection of Tetrachloroethene-Dechlorinating Desulfuromonas andDehalococcoides Species (2000) (288)
Dechlorination of Four Commercial Polychlorinated Biphenyl Mixtures (Aroclors) by Anaerobic Microorganisms from Sediments (1990) (287)
A general framework for quantitatively assessing ecological stochasticity (2019) (284)
Cellulosic biofuel contributions to a sustainable energy future: Choices and outcomes (2017) (283)
Diversity of Nitrite Reductase (nirK and nirS) Gene Fragments in Forested Upland and Wetland Soils (2002) (281)
Dehalogenation: A Novel Pathway for the Anaerobic Biodegradation of Haloaromatic Compounds (1982) (280)
Bacterial diversity in rhizosphere soil from Antarctic vascular plants of Admiralty Bay, maritime Antarctica (2010) (280)
Climate warming enhances microbial network complexity and stability (2021) (276)
Tackling soil diversity with the assembly of large, complex metagenomes (2014) (275)
Anaerobic biodegradation of phenolic compounds in digested sludge (1983) (270)
A reappraisal of the habitability of planets around M dwarf stars. (2006) (262)
Inhibition by sulfide of nitric and nitrous oxide reduction by denitrifying Pseudomonas fluorescens (1980) (259)
Isolation, characterization, and distribution of denitrifying toluene degraders from a variety of habitats (1994) (258)
Nitric Oxide Reductase (norB) Genes from Pure Cultures and Environmental Samples (2003) (256)
Regulation of nitrate assimilation by ammonium in soils and in isolated soil microorganisms (1989) (256)
Mapping the Burkholderia cenocepacia niche response via high-throughput sequencing (2009) (251)
Methylocapsa acidiphila gen. nov., sp. nov., a novel methane-oxidizing and dinitrogen-fixing acidophilic bacterium from Sphagnum bog. (2002) (250)
Antibiotic resistance in European wastewater treatment plants mirrors the pattern of clinical antibiotic resistance prevalence (2019) (249)
Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth of toluene and description of Azoarcus tolulyticus sp. nov. (1995) (248)
Scaling metagenome sequence assembly with probabilistic de Bruijn graphs (2011) (248)
Ecological Patterns of nifH Genes in Four Terrestrial Climatic Zones Explored with Targeted Metagenomics Using FrameBot, a New Informatics Tool (2013) (248)
ARGs‐OAP v2.0 with an expanded SARG database and Hidden Markov Models for enhancement characterization and quantification of antibiotic resistance genes in environmental metagenomes (2018) (248)
Acetate versus hydrogen as direct electron donors to stimulate the microbial reductive dechlorination process at chloroethene-contaminated sites. (2002) (248)
Characterization of Two Tetrachloroethene-Reducing, Acetate-Oxidizing Anaerobic Bacteria and Their Description as Desulfuromonas michiganensis sp. nov (2003) (247)
Cryptic Lineages of the Genus Escherichia (2009) (246)
Temporal Response of Soil Denitrification Rates to Rainfall and Irrigation (1985) (246)
Soil Bacterial Community Shift Correlated with Change from Forest to Pasture Vegetation in a Tropical Soil (1999) (245)
Phylogenetic diversity of a bacterial community determined from Siberian tundra soil DNA. (1997) (244)
Brief and vigorous N2O production by soil at spring thaw (1990) (243)
Microbial populations in Antarctic permafrost: biodiversity, state, age, and implication for astrobiology. (2007) (242)
TerraGenome: a consortium for the sequencing of a soil metagenome (2009) (237)
Membership and Behavior of Ultra-Low-Diversity Pathogen Communities Present in the Gut of Humans during Prolonged Critical Illness (2014) (237)
Denitrification in north temperate forest soils: Relationships between denitrification and environmental factors at the landscape scale (1989) (237)
Mangrove Bacterial Diversity and the Impact of Oil Contamination Revealed by Pyrosequencing: Bacterial Proxies for Oil Pollution (2011) (232)
A computer-simulated restriction fragment length polymorphism analysis of bacterial small-subunit rRNA genes: efficacy of selected tetrameric restriction enzymes for studies of microbial diversity in nature (1996) (230)
Technologies and perspectives for achieving carbon neutrality (2021) (225)
Denitrification: production and consumption of nitric oxide (1994) (224)
Immunological identification and distribution of dissimilatory heme cd1 and nonheme copper nitrite reductases in denitrifying bacteria (1989) (223)
Anaerobic processes in soil (1984) (218)
Bacterial Species Determination from DNA-DNA Hybridization by Using Genome Fragments and DNA Microarrays (2001) (218)
Effects of pH and Oxygen and Ammonium Concentrations on the Community Structure of Nitrifying Bacteria from Wastewater (1998) (216)
Metagenomic Assembly Reveals Hosts of Antibiotic Resistance Genes and the Shared Resistome in Pig, Chicken, and Human Feces. (2016) (216)
Global Transcriptome Analysis of Shewanella oneidensis MR-1 Exposed to Different Terminal Electron Acceptors (2005) (215)
The Influence of Nitrate, Nitrite, and Oxygen on the Composition of the Gaseous Products of Denitrification in Soil 1 (1979) (212)
Tundra soil carbon is vulnerable to rapid microbial decomposition under climate warming (2016) (211)
Denitrification Hysteresis During Wetting and Drying Cycles in Soil (1988) (210)
Channel structures in aerobic biofilms of fixed-film reactors treating contaminated groundwater (1995) (206)
Changes in land use alter the structure of bacterial communities in Western Amazon soils (2009) (205)
ARGs-OAP: online analysis pipeline for antibiotic resistance genes detection from metagenomic data using an integrated structured ARG-database (2016) (203)
Genetic and phenotypic diversity of 2,4-dichlorophenoxyacetic acid (2,4-D)-degrading bacteria isolated from 2,4-D-treated field soils (1994) (199)
Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains (2014) (195)
Effects of Global Changes on Above- and Belowground Biodiversity in Terrestrial Ecosystems: Implications for Ecosystem Functioning (2000) (194)
Molecular Diversity of Denitrifying Genes in Continental Margin Sediments within the Oxygen-Deficient Zone off the Pacific Coast of Mexico (2003) (194)
The Effect of Roots on Soil Denitrification1 (1979) (193)
Biphenyl-utilizing bacteria and their functional genes in a pine root zone contaminated with polychlorinated biphenyls (PCBs) (2007) (193)
Quantitative Detection of Microbial Genes by Using DNA Microarrays (2002) (192)
In situ bioreduction of uranium (VI) to submicromolar levels and reoxidation by dissolved oxygen. (2007) (190)
Biodiversity of cryopegs in permafrost. (2005) (187)
NITROUS OXIDE SOURCES IN AEROBIC SOILS: NITRIFICATION, DENITRIFICATION AND OTHER BIOLOGICAL PROCESSES (1987) (186)
Reductive dechlorination of hexachlorobenzene to tri- and dichlorobenzenes in anaerobic sewage sludge (1988) (186)
Toward a More Robust Assessment of Intraspecies Diversity, Using Fewer Genetic Markers (2006) (186)
Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater. (2003) (183)
A Two-Species Test of the Hypothesis That Spatial Isolation Influences Microbial Diversity in Soil (2002) (182)
Characterization of Desulfitobacterium chlororespirans sp. nov., which grows by coupling the oxidation of lactate to the reductive dechlorination of 3-chloro-4-hydroxybenzoate (1996) (182)
The Exiguobacterium genus: biodiversity and biogeography (2009) (180)
New tools for discovering and characterizing microbial diversity. (2008) (180)
Nitrous Oxide Production by Organisms Other than Nitrifiers or Denitrifiers (1982) (179)
Spatial Variation in Denitrification: Dependency of Activity Centers on the Soil Environment (1990) (179)
Anaerobic activation of the entire denitrification pathway in Pseudomonas aeruginosa requires Anr, an analog of Fnr (1995) (178)
The Earth Microbiome Project: Meeting report of the “1st EMP meeting on sample selection and acquisition” at Argonne National Laboratory October 6th 2010. (2010) (178)
Nonlinear estimation of Monod growth kinetic parameters from a single substrate depletion curve (1983) (178)
Acidophilic Methanotrophic Communities fromSphagnum Peat Bogs (1998) (177)
Gene-Z: a device for point of care genetic testing using a smartphone. (2012) (177)
DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes (2001) (175)
Classification of the biphenyl- and polychlorinated biphenyl-degrading strain LB400T and relatives as Burkholderia xenovorans sp. nov. (2004) (174)
Low-temperature recovery strategies for the isolation of bacteria from ancient permafrost sediments (2000) (173)
Transcriptional and Proteomic Analysis of a Ferric Uptake Regulator (Fur) Mutant of Shewanella oneidensis: Possible Involvement of Fur in Energy Metabolism, Transcriptional Regulation, and Oxidative Stress (2002) (173)
Parallel Processing of Substrate Correlates with Greater Functional Stability in Methanogenic Bioreactor Communities Perturbed by Glucose (2000) (172)
Changes in land use alter the structure of bacterial communities in Western Amazon soils (2009) (171)
Simultaneous estimation of several nitrogen cycle rates using 15N: Theory and application (1986) (170)
Temporal Change in Nitrous Oxide and Dinitrogen from Denitrification Following Onset of Anaerobiosis (1979) (167)
Competition between sulfate-reducing and methanogenic bacteria for H2 under resting and growing conditions (2004) (166)
Coping with Our Cold Planet (2008) (165)
Psychrobacter cryohalolentis sp. nov. and Psychrobacter arcticus sp. nov., isolated from Siberian permafrost. (2006) (165)
Tropical agricultural land management influences on soil microbial communities through its effect on soil organic carbon (2013) (163)
Pristine environments harbor a new group of oligotrophic 2,4-dichlorophenoxyacetic acid-degrading bacteria (1997) (163)
Microbial Communities in Contaminated Sediments, Associated with Bioremediation of Uranium to Submicromolar Levels (2008) (162)
2,4-Dichlorophenoxyacetic acid-degrading bacteria contain mosaics of catabolic genes (1995) (161)
Long‐term balanced fertilization increases the soil microbial functional diversity in a phosphorus‐limited paddy soil (2015) (161)
The Genome Sequence of Psychrobacter arcticus 273-4, a Psychroactive Siberian Permafrost Bacterium, Reveals Mechanisms for Adaptation to Low-Temperature Growth (2010) (160)
Pseudomonas stutzeri Nitrite Reductase Gene Abundance in Environmental Samples Measured by Real-Time PCR (2001) (160)
High-throughput quantification of antibiotic resistance genes from an urban wastewater treatment plant. (2016) (159)
Adaptation of Denitrifying Populations to Low Soil pH (1985) (158)
Establishment of denitrification capacity in soil: effects of carbon, nitrate and moisture (1985) (156)
Denitrifying Bacteria from the Genus Rhodanobacter Dominate Bacterial Communities in the Highly Contaminated Subsurface of a Nuclear Legacy Waste Site (2011) (155)
Reductive dechlorination of DDE to DDMU in marine sediment microcosms. (1998) (154)
2,4-D metabolism: pathway of degradation of chlorocatechols by Arthrobacter sp. (1969) (152)
Climate warming leads to divergent succession of grassland microbial communities (2018) (152)
Interpreting 16S rDNA T-RFLP Data: Application of Self-Organizing Maps and Principal Component Analysis to Describe Community Dynamics and Convergence (2001) (152)
Isolation of acidophilic methane-oxidizing bacteria from northern peat wetlands. (1998) (151)
Pyrosequencing reveals higher impact of silver nanoparticles than Ag+ on the microbial community structure of activated sludge. (2014) (146)
Microbial Communities Associated with Potato Common Scab-Suppressive Soil Determined by Pyrosequencing Analyses. (2012) (145)
Bacterial community in ancient Siberian permafrost as characterized by culture and culture-independent methods. (2006) (145)
Denitrification in soil aggregates analyzed with microsensors for nitrous oxide and oxygen (1994) (143)
Clusters of Antibiotic Resistance Genes Enriched Together Stay Together in Swine Agriculture (2016) (142)
Initial Characterization of a Reductive Dehalogenase from Desulfitobacterium chlororespirans Co23 (1996) (142)
Denitrification and Nitrous Oxide Production in Successional and Old‐Growth Michigan Forests (1984) (141)
Microbial Diversity and Heterogeneity in Sandy Subsurface Soils (2004) (140)
Species Abundance and Diversity of Burkholderia cepacia Complex in the Environment (2005) (140)
In situ Measurement of Gas Diffusion Coefficient in Soils 1 (1976) (139)
Viability, diversity and composition of the bacterial community in a high Arctic permafrost soil from Spitsbergen, Northern Norway. (2007) (138)
Degradation of polychlorinated biphenyl mixtures (Aroclors 1242, 1254, and 1260) by the white rot fungus Phanerochaete chrysosporium as evidenced by congener-specific analysis (1995) (138)
The acetylene inhibition method for short-term measurement of soil denitrification and its evaluation using nitrogen-13. (1978) (137)
Succession and convergence of biofilm communities in fixed-film reactors treating aromatic hydrocarbons in groundwater (1997) (137)
Diffusional Constraints on Denitrification in Soil (1985) (136)
Isolation and Characterization of Desulfovibrio dechloracetivorans sp. nov., a Marine Dechlorinating Bacterium Growing by Coupling the Oxidation of Acetate to the Reductive Dechlorination of 2-Chlorophenol (2000) (135)
Characterization of the Dominant and Rare Members of a Young Hawaiian Soil Bacterial Community with Small-Subunit Ribosomal DNA Amplified from DNA Fractionated on the Basis of Its Guanine and Cytosine Composition (1998) (135)
Evidence for Interspecies Gene Transfer in the Evolution of 2,4-Dichlorophenoxyacetic Acid Degraders (1998) (134)
A gene-targeted approach to investigate the intestinal butyrate-producing bacterial community (2013) (133)
Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications. (2004) (133)
Kinetics of Phenol Biodegradation by an Immobilized Methanogenic Consortium (1986) (131)
Biogeochemical activity of anaerobic microorganisms from buried permafrost sediments (1998) (131)
Microbial Dehalorespiration with 1,1,1-Trichloroethane (2002) (130)
Isolation and characterization of a novel bacterium growing via reductive dehalogenation of 2-chlorophenol (1994) (128)
Relationships between denitrification, CO2, production and air-filled porosity in soils of different texture and drainage (1991) (128)
Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities (2014) (128)
Reduction of nitrate in Shewanella oneidensis depends on atypical NAP and NRF systems with NapB as a preferred electron transport protein from CymA to NapA (2009) (127)
Reductive Dehalogenations of Halobenzoates by Anaerobic Lake Sediment Microorganisms (1983) (126)
Anaerobic biodegradation of phthalic acid esters in sludge. (1984) (126)
Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. (2005) (126)
Comparing the Bacterial Diversity of Acute and Chronic Dental Root Canal Infections (2011) (126)
An omics-based framework for assessing the health risk of antimicrobial resistance genes (2021) (125)
Degradation of ethylene glycol and polyethylene glycols by methanogenic consortia (1983) (125)
Microbial reductive dechlorination of PCBs (1993) (125)
Isolation and characterization of a nitrite reductase gene and its use as a probe for denitrifying bacteria (1992) (124)
Dissimilatory reduction of nitrate and nitrite in the bovine rumen: nitrous oxide production and effect of acetylene (1981) (123)
Novel 2,4-Dichlorophenoxyacetic Acid Degradation Genes from Oligotrophic Bradyrhizobium sp. Strain HW13 Isolated from a Pristine Environment (2002) (123)
Carbon and Electron Flow in Mud and Sandflat Intertidal Sediments at Delaware Inlet, Nelson, New Zealand (1980) (123)
Fungal Community Structure in Disease Suppressive Soils Assessed by 28S LSU Gene Sequencing (2014) (123)
Gene-targeted-metagenomics reveals extensive diversity of aromatic dioxygenase genes in the environment (2009) (122)
High Levels of Endemicity of 3-Chlorobenzoate-Degrading Soil Bacteria (1998) (121)
Intestinal microbial communities associated with acute enteric infections and disease recovery (2015) (121)
Biphenyl and Benzoate Metabolism in a Genomic Context: Outlining Genome-Wide Metabolic Networks in Burkholderia xenovorans LB400 (2004) (121)
Aquaculture changes the profile of antibiotic resistance and mobile genetic element associated genes in Baltic Sea sediments. (2016) (120)
Gene probe analysis of soil microbial populations selected by amendment with 2,4-dichlorophenoxyacetic acid (1992) (119)
Nonpareil 3: Fast Estimation of Metagenomic Coverage and Sequence Diversity (2018) (119)
Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach (2008) (119)
Influence of Manure Application on the Environmental Resistome under Finnish Agricultural Practice with Restricted Antibiotic Use. (2017) (118)
Artificial intelligence: A powerful paradigm for scientific research (2021) (117)
Soil Microbial Community Responses to a Decade of Warming as Revealed by Comparative Metagenomics (2013) (117)
Nitrous Oxide Reductase (nosZ) Gene Fragments Differ between Native and Cultivated Michigan Soils (2004) (117)
Denitrification in a Tallgrass Prairie Landscape (1993) (117)
Criteria and methodology for identifying respiratory denitrifiers (1995) (114)
EARLY SPRING NITROGEN DYNAMICS IN A TEMPERATE FOREST LANDSCAPE (1993) (112)
Kinetics of Hydrogen Consumption by Rumen Fluid, Anaerobic Digestor Sludge, and Sediment (1982) (112)
Diversity of deep-sea hydrothermal vent Archaea from Loihi Seamount, Hawaii (1998) (112)
Dechlorination of chloroethenes is inhibited by 2-bromoethanesulfonate in the absence of methanogens (1997) (111)
Respiratory Nitrate Ammonification by Shewanella oneidensis MR-1 (2006) (111)
Microbial Community Changes Associated with a Shift from Reductive Dechlorination of PCE to Reductive Dechlorination of cis-DCE and VC (2000) (111)
Shewanella—the environmentally versatile genome (2002) (109)
Influence of diet on the structure and function of the bacterial hindgut community of crickets (1998) (108)
Kinetics of Microbial Dehalogenation of Haloaromatic Substrates in Methanogenic Environments (1983) (107)
Pacific Northwest Marine Sediments Contain Ammonia-Oxidizing Bacteria in the β Subdivision of theProteobacteria (2000) (107)
Shewanella loihica sp. nov., isolated from iron-rich microbial mats in the Pacific Ocean. (2006) (107)
Characterization of Exiguobacterium isolates from the Siberian permafrost. Description of Exiguobacterium sibiricum sp. nov. (2006) (107)
Anaerobic degradation of chlorinated aromatic hydrocarbons (1987) (107)
Environmental Risk Assessment of Trifluoroacetic Acid (1999) (106)
Characterization of potential stress responses in ancient Siberian permafrost psychroactive bacteria. (2005) (106)
Responses of microbial community functional structures to pilot-scale uranium in situ bioremediation (2010) (106)
The Resistome of Farmed Fish Feces Contributes to the Enrichment of Antibiotic Resistance Genes in Sediments below Baltic Sea Fish Farms (2017) (106)
Denitrification and dissimilatory nitrate reduction to ammonium in digested sludge. (1981) (105)
GeoChip-based analysis of functional microbial communities during the reoxidation of a bioreduced uranium-contaminated aquifer. (2009) (104)
Evidence for Clostridia as Agents of Dissimilatory Reduction of Nitrate to Ammonium in Soils1 (1979) (103)
Shifts of tundra bacterial and archaeal communities along a permafrost thaw gradient in Alaska (2015) (103)
Pristine soils mineralize 3-chlorobenzoate and 2,4-dichlorophenoxyacetate via different microbial populations (1996) (103)
Comparative systems biology across an evolutionary gradient within the Shewanella genus (2009) (101)
Application of a soil core method to investigate the effect of oxygen concentration on denitrification (1984) (101)
Diet is a major factor governing the fecal butyrate-producing community structure across Mammalia, Aves and Reptilia (2014) (100)
Validation of a more sensitive method for using spotted oligonucleotide DNA microarrays for functional genomics studies on bacterial communities. (2003) (100)
Microarray-Based Characterization of Microbial Community Functional Structure and Heterogeneity in Marine Sediments from the Gulf of Mexico (2008) (99)
Genetic and Genomic Insights into the Role of Benzoate-Catabolic Pathway Redundancy in Burkholderia xenovorans LB400 (2006) (99)
Gene and protein expression profiles of Shewanella oneidensis during anaerobic growth with different electron acceptors. (2002) (99)
Soil teeming with life: new frontiers for soil science. (2001) (99)
Hydrogen cycling in a three-tiered food web growing on the methanogenic conversion of 3-chlorobenzoate (1986) (99)
Kinetic Parameters of the Conversion of Methane Precursors to Methane in a Hypereutrophic Lake Sediment (1978) (99)
16S rRNA Gene-Based Detection of Tetrachloroethene-Dechlorinating Desulfuromonas and Dehalococcoides Species (2000) (99)
Warming enhances old organic carbon decomposition through altering functional microbial communities (2017) (99)
Roadmap for naming uncultivated Archaea and Bacteria (2020) (98)
Phenol- and toluene-degrading microbial populations from an aquifer in which successful trichloroethene cometabolism occurred (1997) (97)
Nitric oxide as an intermediate in denitrification: evidence from nitrogen-13 isotope exchange. (1979) (97)
Reductive Dehalogenation of Trichloroacetic Acid byTrichlorobacter thiogenes gen. nov., sp. nov (2000) (96)
Taxonomic characterization of denitrifying bacteria that degrade aromatic compounds and description of Azoarcus toluvorans sp. nov. and Azoarcus toluclasticus sp. nov. (1999) (96)
DNA-Stable Isotope Probing Integrated with Metagenomics for Retrieval of Biphenyl Dioxygenase Genes from Polychlorinated Biphenyl-Contaminated River Sediment (2009) (95)
Genome sequence of Desulfitobacterium hafniense DCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction (2012) (95)
Growth Substrate- and Phase-Specific Expression of Biphenyl, Benzoate, and C1 Metabolic Pathways in Burkholderia xenovorans LB400 (2005) (95)
Complete reductive dechlorination of 1,2-dichloropropane by anaerobic bacteria (1997) (95)
Pilot-Scale Evaluation of Bioaugmentation for In-Situ Remediation of a Carbon Tetrachloride-Contaminated Aquifer (1998) (94)
Anaerobic degradation of aromatic compounds in sediments and digested sludge (1982) (94)
Deforestation alters denitrification in a lowland tropical rain forest (1988) (94)
Bioenergetic Conditions of Butyrate Metabolism by a Syntrophic, Anaerobic Bacterium in Coculture with Hydrogen-Oxidizing Methanogenic and Sulfidogenic Bacteria (1988) (94)
Significant Association between Sulfate-Reducing Bacteria and Uranium-Reducing Microbial Communities as Revealed by a Combined Massively Parallel Sequencing-Indicator Species Approach (2010) (92)
Stimulated Denitrification in the Microenvironment of a Biodegradable Organic Waste Injected into Soil (1988) (92)
A gas-flow soil core method to measure field denitrification rates (1984) (92)
In situ methane production in a small, hypereutrophic, hard‐water lake: Loss of methane from sediments by vertical diffusion and ebullition 1 (1978) (91)
Psychrobacter arcticus 273-4 Uses Resource Efficiency and Molecular Motion Adaptations for Subzero Temperature Growth (2009) (91)
tfdA-Like Genes in 2,4-Dichlorophenoxyacetic Acid-Degrading Bacteria Belonging to the Bradyrhizobium-Agromonas-Nitrobacter-Afipia Cluster in α-Proteobacteria (2002) (90)
Diversity of Dechlorinating Bacteria (2004) (89)
Establishment of polychlorinated biphenyl-degrading enrichment culture with predominantly meta dechlorination (1992) (87)
Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering (2011) (86)
Metabolism of polyethylene glycol by two anaerobic bacteria, Desulfovibrio desulfuricans and a Bacteroides sp (1986) (86)
Horizontal spread of mer operons among gram-positive bacteria in natural environments. (1998) (83)
Biogeography of two cold-adapted genera: Psychrobacter and Exiguobacterium (2009) (83)
Xander: employing a novel method for efficient gene-targeted metagenomic assembly (2015) (83)
Differential Response of Acidobacteria Subgroups to Forest-to-Pasture Conversion and Their Biogeographic Patterns in the Western Brazilian Amazon (2015) (82)
The chemical mechanism of microbioal denitrification (1982) (82)
The structure of anaerobic bacterial communities in the hypolimnia of several Michigan lakes. (1975) (82)
Temporal Patterns of Soil Denitrification: Their Stability and Causes (1990) (82)
Microbial Succession during a Field Evaluation of Phenol and Toluene as the Primary Substrates for Trichloroethene Cometabolism (1997) (82)
Comparative Analysis of Differentially Expressed Genes in Shewanella oneidensis MR-1 following Exposure to UVC, UVB, and UVA Radiation (2005) (81)
H218O isotope exchange studies on the mechanism of reduction of nitric oxide and nitrite to nitrous oxide by denitrifying bacteria. Evidence for an electrophilic nitrosyl during reduction of nitric oxide. (1991) (81)
Construction and Characterization of Two Recombinant Bacteria That Grow on ortho- and para-Substituted Chlorobiphenyls (1999) (81)
Impacts of Shewanella oneidensis c‐type cytochromes on aerobic and anaerobic respiration (2010) (81)
Integration and excision of a 2,4-dichlorophenoxyacetic acid-degradative plasmid in Alcaligenes paradoxus and evidence of its natural intergeneric transfer (1994) (81)
Degradation of Aroclor 1242 Dechlorination Products in Sediments by Burkholderia xenovorans LB400(ohb) and Rhodococcus sp. Strain RHA1(fcb) (2006) (80)
Degradation of anaerobic reductive dechlorinationproducts of Aroclor 1242 by four aerobic bacteria (2004) (80)
Shifts in Identity and Activity of Methanotrophs in Arctic Lake Sediments in Response to Temperature Changes (2012) (80)
Characterization of the structural gene encoding a copper-containing nitrite reductase and homology of this gene to DNA of other denitrifiers (1993) (79)
Anaerobic dechlorination of polychlorobiphenyls (Aroclor 1242) by pasteurized and ethanol-treated microorganisms from sediments (1992) (79)
Strategies to improve reference databases for soil microbiomes (2016) (79)
Degradation of alachlor by a soil fungus, Chaetomium globosum. (1975) (78)
Diversity of active aerobic methanotrophs along depth profiles of arctic and subarctic lake water column and sediments (2012) (78)
Primer set 2.0 for highly parallel qPCR array targeting antibiotic resistance genes and mobile genetic elements (2018) (78)
Land use intensification in the humid tropics increased both alpha and beta diversity of soil bacteria. (2016) (78)
Evidence for a copper-nitrosyl intermediate in denitrification by the copper-containing nitrite reductase of Achromobacter cycloclastes (1989) (78)
Denitrification response to soil wetting in aggregated and unaggregated soil (1988) (77)
Influence of Soil Characteristics and Proximity to Antarctic Research Stations on Abundance of Antibiotic Resistance Genes in Soils. (2016) (77)
Soil microbial communities under model biofuel cropping systems in southern Wisconsin, USA: Impact of crop species and soil properties (2012) (77)
Development, operation, and long-term performance of a full-scale biocurtain utilizing bioaugmentation. (2002) (76)
Evidence for an NO‐rebound, mechanism for production of N2O from nitrite by the copper‐containing nitrite reductase from Achromobacter cycloclastes (1991) (76)
Microbial Degradation of Ethylenediaminetetraacetate in Soils and Sediments (1975) (75)
A morphological study of anaerobic bacteria from the hypolimnia of two Michigan lakes. (1975) (73)
Temperature sensitivity of organic matter decomposition of permafrost-region soils during laboratory incubations (2016) (73)
A polymer microfluidic chip for quantitative detection of multiple water- and foodborne pathogens using real-time fluorogenic loop-mediated isothermal amplification (2012) (72)
Identification of functionally active aerobic methanotrophs in sediments from an arctic lake using stable isotope probing. (2012) (72)
Characterization of the acclimation period before anaerobic dehalogenation of halobenzoates (1989) (71)
Anaerobic microbial reductive dechlorination of tetrachloroethene to predominately trans-1,2-dichloroethene. (2004) (71)
Conserved phylogenetic distribution and limited antibiotic resistance of class 1 integrons revealed by assessing the bacterial genome and plasmid collection (2018) (70)
Functional genes to assess nitrogen cycling and aromatic hydrocarbon degradation: primers and processing matter (2013) (70)
Diversity of oxygen and N-oxide regulation of nitrite reductases in denitrifying bacteria. (1997) (70)
Sub-Parts-Per-Billion Nitrate Method: Use of an N2O-Producing Denitrifier to Convert NO3− or 15NO3− to N2O (1988) (68)
On-chip non-equilibrium dissociation curves and dissociation rate constants as methods to assess specificity of oligonucleotide probes (2006) (68)
Fate of polybrominated biphenyls (PBB's) in soils. Persistence and plant uptake. (1976) (67)
Comparison of the Specificities and Efficacies of Primers for Aromatic Dioxygenase Gene Analysis of Environmental Samples (2011) (67)
Antibiotic Resistance Genes in the Human-Impacted Environment: A One Health Perspective (2019) (66)
Proteomic analysis of Psychrobacter cryohalolentis K5 during growth at subzero temperatures (2007) (66)
Development and Experimental Validation of a Predictive Threshold Cycle Equation for Quantification of Virulence and Marker Genes by High-Throughput Nanoliter-Volume PCR on the OpenArray Platform (2008) (66)
A CCD-based fluorescence imaging system for real-time loop-mediated isothermal amplification-based rapid and sensitive detection of waterborne pathogens on microchips (2011) (66)
The soil microbial carbon pump: From conceptual insights to empirical assessments (2020) (66)
Bacterial phylogenetic diversity and a novel candidate division of two humid region, sandy surface soils (2003) (66)
Gastrointestinal Microbiology (1997) (64)
Coping with Polychlorinated Biphenyl (PCB) Toxicity: Physiological and Genome-Wide Responses of Burkholderia xenovorans LB400 to PCB-Mediated Stress (2006) (64)
Methods for estimating temperature sensitivity of soil organic matter based on incubation data: A comparative evaluation (2015) (64)
Biomass and biofuel crop effects on biodiversity and ecosystem services in the North Central US (2017) (64)
Influence of corn, switchgrass, and prairie cropping systems on soil microbial communities in the upper Midwest of the United States (2016) (64)
Evidence for acetyl coenzyme A and cinnamoyl coenzyme A in the anaerobic toluene mineralization pathway in Azoarcus tolulyticus Tol-4 (1996) (63)
Coselection of Cadmium and Benzalkonium Chloride Resistance in Conjugative Transfers from Nonpathogenic Listeria spp. to Other Listeriae (2012) (62)
APPLICATIONS OF NUCLEIC ACID HYBRIDIZATION IN MICROBIAL ECOLOGY (1988) (62)
Dynamics of Microbial Community Composition and Function during In Situ Bioremediation of a Uranium-Contaminated Aquifer (2011) (62)
Use of gene probes to aid in recovery and identification of functionally dominant 2,4-dichlorophenoxyacetic acid-degrading populations in soil (1994) (62)
Induction of denitrifying enzymes in oxygen-limited Achromobacter cycloclastes continuous culture (1990) (62)
Enzymic cleavage of the ether bond of 2,4-dichlorophenoxyacetate. (1969) (62)
Survival of Denitrifiers in Nitrate-Free, Anaerobic Environments (1993) (62)
Cloning, Expression, and Nucleotide Sequence of thePseudomonas aeruginosa 142 ohb Genes Coding for Oxygenolytic ortho Dehalogenation of Halobenzoates (1999) (62)
Nocardiopsis tropica sp. nov., Nocardiopsis trehalosi sp. nov., nom. rev. and Nocardiopsis dassonvillei subsp. albirubida subsp. nov., comb. nov. (2000) (60)
Desulfomonile limimaris sp. nov., an anaerobic dehalogenating bacterium from marine sediments. (2001) (60)
Comparison of Field Denitrification Rates Determined by Acetylene‐Based Soil Core and Nitrogen‐15 Methods (1985) (59)
Evaluation of strains isolated by growth on naphthalene and biphenyl for hybridization of genes to dioxygenase probes and polychlorinated biphenyl-degrading ability (1996) (59)
Comparative metagenomics reveals impact of contaminants on groundwater microbiomes (2015) (59)
Metagenomic Insights into the Degradation of Resistant Starch by Human Gut Microbiota (2018) (58)
Mutants of Pseudomonas fluorescens deficient in dissimilatory nitrite reduction are also altered in nitric oxide reduction (1992) (58)
Metagenomics Reveals Pervasive Bacterial Populations and Reduced Community Diversity across the Alaska Tundra Ecosystem (2016) (58)
Responses of tundra soil microbial communities to half a decade of experimental warming at two critical depths (2019) (58)
Size Matters: Assessing Optimum Soil Sample Size for Fungal and Bacterial Community Structure Analyses Using High Throughput Sequencing of rRNA Gene Amplicons (2016) (57)
Bacterial community composition of anthropogenic biochar and Amazonian anthrosols assessed by 16S rRNA gene 454 pyrosequencing (2013) (57)
Identifying the genetic basis of ecologically and biotechnologically useful functions of the bacterium Burkholderia vietnamiensis. (2007) (57)
Increased nitrous oxide accumulation by bioelectrochemical denitrification under autotrophic conditions: kinetics and expression of denitrification pathway genes. (2013) (57)
The relationship between reductive dehalogenation and other aryl substituent removal reactions catalyzed by anaerobes (1986) (57)
2,4-D metabolism: enzymatic conversion of chloromaleylacetic acid to succinic acid. (1970) (57)
Biodegradation of Nitrilotriacetate (NTA) in Soils1 (1974) (56)
Strain DCB-1 conserves energy for growth from reductive dechlorination coupled to formate oxidation (2004) (56)
Methods for the Production and Use of Nitrogen-13 In Studies of Denitrification 1 (1979) (55)
Correspondence between Community Structure and Function during Succession in Phenol- and Phenol-plus-Trichloroethene-Fed Sequencing Batch Reactors (2004) (55)
Role of tetracycline speciation in the bioavailability to Escherichia coli for uptake and expression of antibiotic resistance. (2014) (55)
Advantages of the metagenomic approach for soil exploration: reply from Vogel et al. (2009) (54)
Microbial Community Analysis with Ribosomal Gene Fragments from Shotgun Metagenomes (2015) (54)
The microbial world: Foundation of the biosphere (1996) (54)
Climate warming accelerates temporal scaling of grassland soil microbial biodiversity (2019) (54)
Transcriptome Analysis Applied to Survival of Shewanella oneidensis MR-1 Exposed to Ionizing Radiation (2006) (54)
Frequent freeze-thaw cycles yield diminished yet resistant and responsive microbial communities in two temperate soils: a laboratory experiment. (2010) (54)
Physiological characterization of strain DCB-1, a unique dehalogenating sulfidogenic bacterium (1988) (54)
Analysis of competition in soil among 2,4-dichlorophenoxyacetic acid-degrading bacteria (1994) (54)
Recently Deglaciated High-Altitude Soils of the Himalaya: Diverse Environments, Heterogenous Bacterial Communities and Long-Range Dust Inputs from the Upper Troposphere (2013) (53)
Metabolism of nitrilotriacetate by cells of Pseudomonas species. (1973) (53)
Evidence for para dechlorination of polychlorobiphenyls by methanogenic bacteria (1995) (53)
Method for measuring dissolved hydrogen in anaerobic ecosystems: application to the rumen (1981) (53)
Associative nitrogen fixation (ANF) in switchgrass (Panicum virgatum) across a nitrogen input gradient (2018) (53)
Response of electron-capture detector to hydrogen, oxygen, nitrogen, carbon dioxide, nitric oxide and nitrous oxide (1980) (52)
Use of molecular techniques to evaluate the survival of a microorganism injected into an aquifer. (1993) (52)
The reduction of nitrate to ammonium by a Clostridium sp. isolated from soil. (1980) (52)
More replenishment than priming loss of soil organic carbon with additional carbon input (2018) (52)
Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community (2020) (52)
Long-Term Effect of Different Fertilization and Cropping Systems on the Soil Antibiotic Resistome. (2018) (51)
How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity? (2018) (51)
Dechlorination of (2,4,5-trichlorophenoxy) acetic acid by anaerobic microorganisms (1984) (51)
Growth yield increase linked to reductive dechlorination in a defined 3-chlorobenzoate degrading methanogenic coculture (2004) (51)
Bacterial Communities in the Rhizosphere of Biofuel Crops Grown on Marginal Lands as Evaluated by 16S rRNA Gene Pyrosequences (2010) (50)
Characterization of the Cricket Hindgut Microbiota with Fluorescently Labeled rRNA-Targeted Oligonucleotide Probes (1998) (50)
Conversion of Amazon rainforest to agriculture alters community traits of methane‐cycling organisms (2017) (50)
Effect of Sugarcane Burning or Green Harvest Methods on the Brazilian Cerrado Soil Bacterial Community Structure (2013) (50)
Survival of Shewanella oneidensis MR-1 after UV Radiation Exposure (2004) (49)
MicroRNAs-Based Inter-Domain Communication between the Host and Members of the Gut Microbiome (2017) (49)
Metabolism of two new acylanilide herbicides, Antor herbicide (H-22234) and Dual (metolachlor) by the soil fungus Chaetomium globosum (1978) (49)
Fungal Diversity in Permafrost and Tallgrass Prairie Soils under Experimental Warming Conditions (2013) (49)
Evidence from isotope labeling studies for a sequential mechanism for dissimilatory nitrite reduction (1988) (48)
Evidence for chemiosmotic coupling of reductive dechlorination and ATP synthesis in Desulfomonile tiedjei (1991) (48)
Alterations of the Murine Gut Microbiome with Age and Allergic Airway Disease (2015) (48)
2-Bromoethanesulfonate, Sulfate, Molybdate, and Ethanesulfonate Inhibit Anaerobic Dechlorination of Polychlorobiphenyls by Pasteurized Microorganisms (1999) (47)
Response of microbial communities to changing environmental conditions: chemical and physiological approaches (1993) (47)
Acetate Inhibition of Methanogenic, Syntrophic Benzoate Degradation (1988) (47)
In Situ-Synthesized Virulence and Marker Gene Biochip for Detection of Bacterial Pathogens in Water (2008) (46)
Factors controlling the rate of DDE dechlorination to DDMU in Palos Verdes margin sediments under anaerobic conditions. (2001) (46)
Potential of DNA microarrays for developing parallel detection tools (PDTs) for microorganisms relevant to biodefense and related research needs. (2004) (46)
Organic acids enhance bioavailability of tetracycline in water to Escherichia coli for uptake and expression of antibiotic resistance. (2014) (46)
Gene-informed decomposition model predicts lower soil carbon loss due to persistent microbial adaptation to warming (2020) (46)
Root-associated microbiome of maize genotypes with contrasting phosphorus use efficiency. (2018) (46)
Soluble electron shuttles can mediate energy taxis toward insoluble electron acceptors. (2012) (45)
Soil depth and crop determinants of bacterial communities under ten biofuel cropping systems (2017) (45)
Development of a Rhodococcus recombinant strain for degradation of products from anaerobic dechlorination of PCBs. (2001) (45)
Effect of low temperature and culture media on the growth and freeze-thawing tolerance of Exiguobacterium strains. (2007) (45)
New Biological Insights Into How Deforestation in Amazonia Affects Soil Microbial Communities Using Metagenomics and Metagenome-Assembled Genomes (2018) (45)
DENITRIFICATION AT DIFFERENT TEMPORAL AND GEO- GRAPHICAL SCALES: PROXIMAL AND DISTAL CONTROLS (1988) (44)
Influence of environmental parameters on EDTA biodegradation in soils and sediments (1977) (44)
A proteomic analysis of Psychrobacter articus 273‐4 adaptation to low temperature and salinity using a 2‐D liquid mapping approach (2007) (43)
Metabolic activity of Siberian permafrost isolates, Psychrobacter arcticus and Exiguobacterium sibiricum, at low water activities (2008) (43)
Genome Sequences of Burkholderia sp. Strains CCGE1002 and H160, Isolated from Legume Nodules in Mexico and Brazil (2012) (43)
Isotope labeling studies on the mechanism of N-N bond formation in denitrification. (1986) (43)
Genomic Diversity of Escherichia Isolates from Diverse Habitats (2012) (43)
Intercropped Silviculture Systems, a Key to Achieving Soil Fungal Community Management in Eucalyptus Plantations (2015) (43)
Agreia bicolorata gen. nov., sp. nov., to accommodate actinobacteria isolated from narrow reed grass infected by the nematode Heteroanguina graminophila. (2001) (42)
Reductive dechlorination of tetrachloroethylene by a chlorobenzoate-enriched biofilm reactor. (1994) (42)
Gene expression analysis of E. coli strains provides insights into the role of gene regulation in diversification (2014) (42)
Pathway of degradation of nitrilotriacetate by a Pseudomonas species (1978) (42)
The impact of fermentative organisms on carbon flow in methanogenic systems under constant low-substrate conditions (2001) (41)
Deforestation impacts network co-occurrence patterns of microbial communities in Amazon soils (2018) (41)
Detection and quantification of copper-denitrifying bacteria by quantitative competitive PCR. (2004) (41)
Multi-locus real-time PCR for quantitation of bacteria in the environment reveals Exiguobacterium to be prevalent in permafrost. (2007) (41)
Isotopic evidence for episodic nitrogen fixation in switchgrass (Panicum virgatum L.) (2019) (40)
Isotopic evidence for episodic nitrogen fixation in switchgrass (Panicum virgatum L.) (2019) (40)
Soil microbial residue storage linked to soil legacy under biofuel cropping systems in southern Wisconsin, USA. (2013) (40)
Toward unrestricted use of public genomic data (2019) (40)
Gene transfer from a bacterium injected into an aquifer to an indigenous bacterium (1995) (40)
Identification of Bacterial Isolates Obtained from Intestinal Contents Associated with 12,000-Year-Old Mastodon Remains (1998) (39)
A novel means to develop strain-specific DNA probes for detecting bacteria in the environment (1997) (39)
The Microbiome of Eucalyptus Roots under Different Management Conditions and Its Potential for Biological Nitrogen Fixation (2017) (39)
Importance of sub-surface rhizosphere-mediated coupled nitrification–denitrification in a flooded agroecosystem in Hawaii (2013) (38)
Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis (2013) (38)
Purification of cytochrome cd1 nitrite reductase from Pseudomonas stutzeri JM300 and reconstitution with native and synthetic heme d1. (1991) (38)
Microbial Ecology and Genomics: A Crossroads of Opportunity (2002) (38)
Antibiotic Resistome Associated with Small-Scale Poultry Production in Rural Ecuador. (2018) (37)
Bacterial Community Shift and Coexisting/Coexcluding Patterns Revealed by Network Analysis in a Uranium-Contaminated Site after Bioreduction Followed by Reoxidation (2018) (37)
NifH-Harboring Bacterial Community Composition across an Alaskan Permafrost Thaw Gradient (2016) (36)
A buried Neolithic paddy soil reveals loss of microbial functional diversity after modern rice cultivation (2016) (36)
Changes in the biodiversity of microbial populations in tropical soils under different fallow treatments (2008) (36)
Spatial heterogeneity in the distribution of denitrifying bacteria associated with denitrification activity zones (1995) (36)
Reductive debromination of the commercial polybrominated biphenyl mixture firemaster BP6 by anaerobic microorganisms from sediments (1992) (36)
Long-term excess nitrogen fertilizer increases sensitivity of soil microbial community to seasonal change revealed by ecological network and metagenome analyses (2021) (35)
Microbial Diversity of a Mediterranean Soil and Its Changes after Biotransformed Dry Olive Residue Amendment (2014) (35)
Complete Genome Sequence of the Thermophilic Bacterium Exiguobacterium sp. AT1b (2011) (35)
Worldwide Prevalence of Class 2 Integrases outside the Clinical Setting Is Associated with Human Impact (2009) (34)
Application of a recA gene-based identification approach to the maize rhizosphere reveals novel diversity in Burkholderia species. (2006) (34)
Biodegradation of metal-nitrilotriacetate complexes by a Pseudomonas species: mechanism of reaction. (1975) (34)
Nitrogen fixation by naturally occurring duckweed–cyanobacterial associations (1985) (34)
Agromyces albus sp. nov., isolated from a plant (Androsace sp.). (2003) (34)
Identification of Potential Therapeutic Targets for Burkholderia cenocepacia by Comparative Transcriptomics (2010) (34)
Bioavailability of Soil-Sorbed Tetracycline to Escherichia coli under Unsaturated Conditions. (2017) (33)
Regional scale analysis of denitrification in north temperate forest soils (1992) (33)
Antimicrobial resistance dashboard application for mapping environmental occurrence and resistant pathogens. (2016) (33)
Hypoxia and Inactivity Related Physiological Changes (Constipation, Inflammation) Are Not Reflected at the Level of Gut Metabolites and Butyrate Producing Microbial Community: The PlanHab Study (2017) (33)
Functional Gene Hybridization Patterns of Terrestrial Ammonia-Oxidizing Bacteria (1998) (33)
Fnr (EtrA) acts as a fine-tuning regulator of anaerobic metabolism in Shewanella oneidensis MR-1 (2011) (33)
Effect of LSU and ITS genetic markers and reference databases on analyses of fungal communities (2018) (32)
Denitrification in a clearcut Loblolly pine (Pinus taeda L.) plantation in the southeastern US (1987) (32)
Application of the fluorescent-antibody technique to the study of a methanogenic bacterium in lake sediments (1978) (32)
Microbial Community Structure and Functional Potential in Cultivated and Native Tallgrass Prairie Soils of the Midwestern United States (2018) (32)
Environmentally relevant parameters affecting PCB degradation: carbon source- and growth phase-mitigated effects of the expression of the biphenyl pathway and associated genes in Burkholderia xenovorans LB400 (2010) (32)
Characterization of a bacterial community from a Northeast Siberian seacoast permafrost sample. (2010) (31)
BSD: the Biodegradative Strain Database (2003) (31)
The Ribosomal Database Project: Sequences and Software for High-Throughput rRNA Analysis (2011) (30)
Effects of phenol feeding pattern on microbial community structure and cometabolism of trichloroethylene (1996) (30)
Methane-derived carbon flow through microbial communities in arctic lake sediments. (2015) (30)
Catabolic thiosulfate disproportionation and carbon dioxide reduction in strain DCB-1, a reductively dechlorinating anaerobe (1990) (30)
Selection of fluorescent DNA dyes for real-time LAMP with portable and simple optics. (2015) (30)
Localization of the cytochrome cd1 and copper nitrite reductases in denitrifying bacteria (1990) (30)
Field concentrations and persistence of polybrominated biphenyls in soils and solubility of PBB in natural waters. (1978) (30)
Sensitive detection of a novel class of toluene-degrading denitrifiers, Azoarcus tolulyticus, with small-subunit rRNA primers and probes (1997) (30)
Winter warming in Alaska accelerates lignin decomposition contributed by Proteobacteria (2020) (29)
Ecology of the gut microbiota of Tracheoniscus rathkei (Crustacea, Isopoda) (1976) (29)
Bacillus cabrialesii sp. nov., an endophytic plant growth promoting bacterium isolated from wheat (Triticum turgidum subsp. durum) in the Yaqui Valley, Mexico. (2019) (29)
TCDD influences reservoir of antibiotic resistance genes in murine gut microbiome. (2017) (29)
Rathayibacter caricis sp. nov. and Rathayibacter festucae sp. nov., isolated from the phyllosphere of Carex sp. and the leaf gall induced by the nematode Anguina graminis on Festuca rubra L., respectively. (2002) (29)
Behavior of pollutant-degrading microorganisms in aquifers: predictions for genetically engineered organisms. (1994) (28)
WASTE MANAGEMENT RESEARCH. (1972) (28)
Influence of Substituents on Reductive Dehalogenation of 3-Chlorobenzoate Analogs (1991) (28)
An assessment of the reductive debromination of polybrominated biphenyls in the Pine River Reservoir (1993) (28)
Reduction of microbial diversity in grassland soil is driven by long-term climate warming (2022) (28)
DNA Probe Analysis of Microbial Community Selected in Field by Long-Term 2,4-D Application (1995) (28)
DNA recovery from soils of diverse (1996) (28)
Genomic and Expression Analyses of Cold-Adapted Microorganisms. (2011) (28)
A spectrophotometric assay for dissimilatory nitrite reductases. (1988) (28)
Switchgrass rhizospheres stimulate microbial biomass but deplete microbial necromass in agricultural soils of the upper Midwest, USA (2016) (27)
Tetrachloroethene and 3-chlorobenzoate dechlorination activities are co-induced inDesulfomonile tiedjei DCB-1 (1995) (27)
Benzylfumaric, benzylmaleic, and Z- and E-phenylitaconic acids: synthesis, characterization, and correlation with a metabolite generated by Azoarcus tolulyticus Tol-4 during anaerobic toluene degradation (1996) (27)
Stability, genotypic and phenotypic diversity of Shewanella baltica in the redox transition zone of the Baltic Sea. (2014) (27)
Influence of Dangling Ends and Surface-Proximal Tails of Targets on Probe-Target Duplex Formation in 16S rRNA Gene-Based Diagnostic Arrays (2006) (27)
Development and use of genetic system to identify genes required for efficient low-temperature growth of Psychrobacter arcticus 273-4 (2008) (27)
Improved protocol for T-RFLP by capillary electrophoresis (2002) (27)
The chemical mechanism of microbial denitrification. (1982) (27)
Novel Biphenyl-Oxidizing Bacteria and Dioxygenase Genes from a Korean Tidal Mudflat (2011) (26)
Microbial processes in C and N dynamics. (2000) (26)
A Large Gene Cluster in Burkholderia xenovorans Encoding Abietane Diterpenoid Catabolism (2007) (26)
Chlorophenol dechlorination and subsequent degradation in denitrifying microcosms fed low concentrations of nitrate (2004) (26)
Assimilatory nitrate uptake in Pseudomonas fluorescens studied using nitrogen-13 (1981) (26)
Pharmaceutical exposure changed antibiotic resistance genes and bacterial communities in soil-surface- and overhead-irrigated greenhouse lettuce. (2019) (26)
Expansion of the global RNA virome reveals diverse clades of bacteriophages (2022) (25)
Diazotroph Diversity and Nitrogen Fixation in Summer Active Perennial Grasses in a Mediterranean Region Agricultural Soil (2019) (25)
Soil Organic Carbon in a Changing World (2017) (25)
Antibiotic resistance in the soil ecosystem: A One Health perspective (2021) (25)
Evaluation of the Ion Torrent Personal Genome Machine for Gene-Targeted Studies Using Amplicons of the Nitrogenase Gene nifH (2015) (25)
Most probable number - loop mediated isothermal amplification (MPN-LAMP) for quantifying waterborne pathogens in <25min. (2017) (25)
Use of both 16S rRNA and engineered functional genes with real-time PCR to quantify an engineered, PCB-degrading Rhodococcus in soil. (2002) (25)
Sub-Parts-Per-Billion Nitrate Method: Use of an N(2)O-Producing Denitrifier to Convert NO(3) or NO(3) to N(2)O. (1988) (25)
Characterization of Tn5 mutants deficient in dissimilatory nitrite reduction in Pseudomonas sp. strain G-179, which contains a copper nitrite reductase (1992) (25)
Microbial Functional Genomics: Zhou/Microbial Functional Genomics (2005) (24)
Metabolism of 14c-labeled plant materials by woodlice (Tracheoniscus rathkei brandt) and soil microorganisms (1976) (24)
Sphingomonas wittichii Strain RW1 Genome-Wide Gene Expression Shifts in Response to Dioxins and Clay (2016) (24)
Enhanced antibacterial activity of magnetic biochar conjugated quaternary phosphonium salt (2020) (24)
Use of molecular techniques to evaluate the survival of a microorganism injected into an aquifer (1994) (24)
Microbial reductive dehalogenation (1992) (23)
Denitrifying and diazotrophic community responses to artificial warming in permafrost and tallgrass prairie soils (2015) (23)
Long-Term Warming in Alaska Enlarges the Diazotrophic Community in Deep Soils (2019) (22)
Implications of direct amplification for measuring antimicrobial resistance using point-of-care devices. (2017) (22)
Biotic responses buffer warming‐induced soil organic carbon loss in Arctic tundra (2018) (22)
Large-Scale Comparative Phenotypic and Genomic Analyses Reveal Ecological Preferences of Shewanella Species and Identify Metabolic Pathways Conserved at the Genus Level (2011) (22)
Microbial functional diversity covaries with permafrost thaw‐induced environmental heterogeneity in tundra soil (2018) (22)
The mechanism of microbial denitrification (1987) (21)
Composting increased persistence of manure-borne antibiotic resistance genes in soils with different fertilization history. (2019) (21)
Glucose addition increases the magnitude and decreases the age of soil respired carbon in a long-term permafrost incubation study (2019) (21)
Carbon dioxide fixation and mixotrophic metabolism by strain DCB-1, a dehalogenating anaerobic bacterium (1988) (21)
Soil fungal and bacterial responses to conversion of open land to short‐rotation woody biomass crops (2016) (21)
Dynamic Succession of Groundwater Functional Microbial Communities in Response to Emulsified Vegetable Oil Amendment during Sustained In Situ U(VI) Reduction (2015) (21)
Static self-directed sample dispensing into a series of reaction wells on a microfluidic card for parallel genetic detection of microbial pathogens (2015) (21)
Erratum: Changes in land use alter the structure of bacterial communities in Western Amazon soils (The ISME Journal (2009) 3 (1004-1011) DOI: 10.1038/ismej.2009.47) (2009) (20)
A new primer set for Clade I nosZ that recovers genes from a broader range of taxa (2021) (20)
Microbes and Climate Change: a Research Prospectus for the Future (2022) (20)
Kinetics of two complementary hydrogen sink reactions in a defined 3‐chlorobenzoate degrading methanogenic co‐culture (1991) (20)
Annual Removal of Aboveground Plant Biomass Alters Soil Microbial Responses to Warming (2016) (20)
Microbial communities biostimulated by ethanol during uranium (VI) bioremediation in contaminated sediment as shown by stable isotope probing (2015) (20)
Biofilm Formation by Psychrobacter arcticus and the Role of a Large Adhesin in Attachment to Surfaces (2013) (19)
Hypoxia and inactivity related physiological changes precede or take place in absence of significant rearrangements in bacterial community structure: The PlanHab randomized trial pilot study (2017) (19)
Genome Sequencing of Five Shewanella baltica Strains Recovered from the Oxic-Anoxic Interface of the Baltic Sea (2012) (18)
Denitrifiers (2018) (18)
Tundra microbial community taxa and traits predict decomposition parameters of stable, old soil organic carbon (2019) (18)
Peat-based gnotobiotic plant growth systems for Arabidopsis microbiome research (2021) (18)
Bioaccumulation of Manure-borne antibiotic resistance genes in carrot and its exposure assessment. (2021) (18)
Isothermal assay targeting class 1 integrase gene for environmental surveillance of antibiotic resistance markers. (2017) (18)
Denitrification in rice soils (1982) (18)
Absence of plant uptake and translocation of polybrominated biphenyls (PBBs). (1978) (18)
Genomic Insights into Cold Adaptation of Permafrost Bacteria (2009) (17)
Evaluation of Nucleic Acid Isothermal Amplification Methods for Human Clinical Microbial Infection Detection (2017) (17)
New Frontiers in Soil Microbiology: How To Link Structure and Function of Microbial Communities? (2006) (17)
Removal of extracellular antibiotic resistance genes using magnetic biochar/quaternary phosphonium salt in aquatic environments: A mechanistic study. (2021) (17)
Use of non-porous reversed-phase high-performance liquid chromatography for protein profiling and isolation of proteins induced by temperature variations for Siberian permafrost bacteria with identification by matrix-assisted laser desorption/ionization time-of-flight mass spectrometry and capillary (2000) (16)
Oxygen control prevents denitrifiers and barley plant roots from directly competing for nitrate (1988) (16)
Microbial Community Analysis using RDP II (Ribosomal Database Project II):Methods, Tools and New Advances (2009) (16)
Long-read sequencing revealed cooccurrence, host range, and potential mobility of antibiotic resistome in cow feces (2021) (16)
FlowPot axenic plant growth system for microbiota research (2018) (16)
Microarray-based whole-genome hybridization as a tool for determining procaryotic species relatedness (2008) (15)
The ecology of an anaerobic dechlorinating consortium. (1988) (15)
Gene‐Targeted Metagenomics (GT Metagenomics) to Explore the Extensive Diversity of Genes of Interest in Microbial Communities (2011) (15)
Virulence factor activity relationships (VFARs): a bioinformatics perspective. (2017) (15)
Community shift of microbial ammonia oxidizers in air-dried rice soils after 22 years of nitrogen fertilization (2019) (15)
Antibiotic Resistance Gene Detection in the Microbiome Context. (2017) (14)
Biodegradation of hazardous wastes. (1994) (14)
Growth and survival of antibiotic-resistant denitrifier strains in soil (1980) (14)
Microbial Life in Permafrost: Extended Times in Extreme Conditions (2004) (14)
Bioavailability of tetracycline to antibiotic resistant Escherichia coli in water-clay systems. (2018) (14)
Dynamics of Microbial Community Composition and Function during In Situ Bioremediation of a Uranium-Contaminated Aquifer (2011) (14)
Microbes in the Energy Grid (2008) (14)
Choosing Your Battles: Which Resistance Genes Warrant Global Action? (2019) (14)
Characterization of the requirements and substrates for reductive dehalogenation by strain DCB-1 (2005) (14)
Strategy for Mitigating Antibiotic Resistance by Biochar and Hyperaccumulators in Cadmium and Oxytetracycline Co-contaminated Soil. (2021) (13)
Evaluation of PCB Dechlorination in Sediments (1997) (13)
Evaluating the Performance of Oligonucleotide Microarrays for Bacterial Strains with Increasing Genetic Divergence from the Reference Strain (2010) (13)
Land-use change drives abundance and community structure alterations of thaumarchaeal ammonia oxidizers in tropical rainforest soils in Rondônia, Brazil (2016) (13)
Detection in soil of a deletion in an engineered DNA sequence by using DNA probes (1989) (12)
Acetate as a source of reducing equivalents in the reductive dechlorination of 2,5-dichlorobenzoate (1991) (12)
BEsTRF: a tool for optimal resolution of terminal-restriction fragment length polymorphism analysis based on user-defined primer-enzyme-sequence databases (2009) (12)
Use of Nitrogen-13 and Nitrogen-15 in Studies on the Dissimilatory Fate of Nitrate (1981) (12)
History and impact of RDP (2014) (12)
Genome-wide Examination of the Natural Solar Radiation Response in Shewanella oneidensis MR-1 (2005) (12)
Intestinal microbial communities associated with acute enteric infections and disease recovery (2015) (12)
An ecological study of the sulfur-oxidizing bacteria from the littoral zone of a michigan lake and a sulfur spring in Florida (1975) (11)
Functional roles of CymA and NapC in reduction of nitrate and nitrite by Shewanella putrefaciens W3-18-1. (2016) (11)
Shewanella oneidensis MR-1 chemotaxis in a diffusion gradient chamber. (2011) (11)
A nitrilotriacetic acid monooxygenase with conditional NADH-oxidase activity. (1978) (11)
The “Minimum Information about an ENvironmental Sequence” (MIENS) specification (2010) (11)
Modulatory Influence of Segmented Filamentous Bacteria on Transcriptomic Response of Gnotobiotic Mice Exposed to TCDD (2017) (11)
Specific deuteration of dichlorobenzoate during reductive dehalogenation by Desulfomonile tiedjei in D2O (1992) (11)
Integrating Biochar, Bacteria, and Plants for Sustainable Remediation of Soils Contaminated with Organic Pollutants (2022) (11)
Comment on “The whole-soil carbon flux in response to warming” (2018) (11)
Modeling Hybridization Kinetics of Gene Probes in a DNA Biochip Using FEMLAB (2017) (10)
Does anaerobic condition play a more positive role in dissipation of antibiotic resistance genes in soil? (2020) (10)
Reductive dechlorination of 4‐chlororesorcinol by anaerobic microorganisms (1987) (10)
Journal Impact Factors: Changing the Weather: The Journal Impact Factor is not making a positive contribution to science, and ASM will no longer support it for its journals (2016) (10)
Effect of storage conditions on the stability and fermentability of enzymatic lignocellulosic hydrolysate. (2013) (10)
Bacillus-Dominant Airborne Bacterial Communities Identified During Asian Dust Events (2019) (9)
Author Correction: Global diversity and biogeography of bacterial communities in wastewater treatment plants (2019) (9)
Taxonomic and Functional Responses of Soil Microbial Communities to Annual Removal of Aboveground Plant Biomass (2018) (9)
SOIL MODIFICATION FOR DENITRIFICATION AND PHOSPHATE REDUCTION OF FEEDLOT WASTE. (1974) (9)
Winter warming rapidly increases carbon degradation capacities of fungal communities in tundra soil: Potential consequences on carbon stability (2020) (9)
Analysis of non-culturable bacteria. (1996) (9)
Assembling large, complex environmental metagenomes (2012) (9)
The effect of suppression treatments on the uptake of 15N by intercropped corn from labeled alfalfa (Medicago sativa) (1993) (9)
Short-Term Measurement of Denitrification Rates in Soils Using 13N and Acetylene Inhibition Methods (1978) (9)
Competitive and interactions affecting a fermentative spirochete in anaerobic chemostats. (2003) (8)
Quantification of microRNAs directly from body fluids using a base-stacking isothermal amplification method in a point-of-care device (2017) (8)
General MethodforDetermining Anaerobic Biodegradation Potentialt (1984) (8)
Impact of space, time and complex environments on microbial communities. (2009) (8)
Involvement of a Collar Structure in Polar Growth and Cell Division of Strain DCB-1 (1990) (8)
Genomic Variations Underlying Speciation and Niche Specialization of Shewanella baltica (2019) (8)
Illumina Sequencing Artifacts Revealed by Connectivity Analysis of Metagenomic Datasets (2012) (7)
Editorial: The Environmental Dimension of Antibiotic Resistance. (2020) (7)
Corrigendum: The Resistome of Farmed Fish Feces Contributes to the Enrichment of Antibiotic Resistance Genes in Sediments below Baltic Sea Fish Farms (2017) (7)
TCDD administered on activated carbon eliminates bioavailability and subsequent shifts to a key murine gut commensal (2017) (7)
Draft genome of the fungicidal biological control agent Burkholderia anthina strain XXVI (2018) (7)
Divergence in Gene Regulation Contributes to Sympatric Speciation of Shewanella baltica Strains (2017) (7)
Diazotrophs Show Signs of Restoration in Amazon Rain Forest Soils with Ecosystem Rehabilitation (2020) (7)
Methods for Evaluation of PCB Dechlorination in Sediments (1997) (7)
Review, Evaluation, and Directions for Gene-Targeted Assembly for Ecological Analyses of Metagenomes (2019) (7)
Grand Challenges for Biological and Environmental Research: A Long-Term Vision (2010) (7)
Wastewater Structure of Nitrifying Bacteria from Concentrations on the Community Effects of pH and Oxygen and Ammonium (1998) (6)
Development of test for determining anaerobic biodegradation potential. Report for Sep 79-Sep 81 (1981) (6)
Development of soil metadata standards for international DNA sequence databases. (2010) (6)
Competitive and Cooperative Interactions Affecting a Fermentative Spirochete in Anaerobic Chemostats (2003) (6)
Sub-parts-per-billion nitrate method: use of an N/sub 2/O-producing denitrifier to convert NO/sub 2//sup -/ or /sup 15/NO/sub 2//sup -/ to N/sub 2/O (1988) (6)
Editorial: Special section of FEMS Microbiology Ecology on the environmental dimension of antibiotic resistance. (2016) (6)
Diagnostic microarray for 14 water and foodborne pathogens using a flatbed scanner. (2017) (6)
Methodologies for probing the metatranscriptome of grassland soil. (2016) (6)
Use of Stable Isotope Probing in Selectively Isolating Target Microbial Community Genomes from Environmental Samples for Enhancing Resolution in Ecotoxicological Assessment (2006) (6)
Bioavailability of clay-adsorbed dioxin to Sphingomonas wittichii RW1 and its associated genome-wide shifts in gene expression. (2020) (6)
Isolation and characterization of a nitrite reductase gene and its use as a probe for denitrifying bacteria. [Pseudomonas stutzeri] (1992) (6)
Metabolism of 14C uniformly labeled organic material by woodlice [Isopoda: Oniscoidea] and soil microorganisms (1973) (6)
Catabolic and genetic diversity of microbial communities in Australian soils are influenced by soil type and stubble management. (2010) (6)
Anaerobic Bioremediation: Microbiology, Principles, and Applications (2015) (5)
Targeted assemblies of cas1 suggest CRISPR-Cas’s response to soil warming (2020) (5)
Permafrost thaw with warming reduces microbial metabolic capacities in subsurface soils (2021) (5)
An automated technique for sampling the contents of stoppered gas-collection vials (1985) (5)
13. Anaerobic degradation of chlorinated aromatic hydrocarbons (1987) (5)
Methods used to track introduced genetically engineered organisms (1988) (5)
Genomic analysis of the phenylacetyl-CoA pathway in Burkholderia xenovorans LB400 (2011) (5)
Global airborne bacterial community—interactions with Earth’s microbiomes and anthropogenic activities (2022) (5)
Organic amendments change soil organic C structure and microbial community but not total organic matter on sub-decadal scales (2020) (5)
Microbial Diversity and Genomics (2005) (5)
Towards microbial data integration (1997) (4)
Development of aquifer microcosms and in situ methods to test the fate and function of pollutant-degrading microorganisms (1991) (4)
Localization of the Cytochrome cdl and Copper Nitrite Reductases in Denitrifying Bacteriat (4)
Consent insufficient for data release—Response (2019) (4)
Soil microbial community diversity and driving mechanisms (2001) (4)
Enhancing PCB bioremediation (2005) (4)
Erratum: Tackling soil diversity with the assembly of large, complex metagenomes (Proceedings of the National Academy of Sciences of the United States of America (2014) 111, 13, (4904-4909) doi:10.1073/pnas.1402564111) (2014) (4)
Paciﬁc Northwest Marine Sediments Contain Ammonia-Oxidizing Bacteria in the b Subdivision of the Proteobacteria (2000) (4)
Aerobic and Anaerobic Transformation of cis-Dichloroethene (cis-DCE) and Vinyl Chloride (VC): Steps for Reliable Remediation (2003) (4)
To sequence or not to sequence the whole-soil metagenome? (2009) (4)
Author Correction: Roadmap for naming uncultivated Archaea and Bacteria (2020) (4)
Metabolism ofNitrilotriacetat e byCells of Pseudomonas Species1 (1973) (4)
Microbial reductive dehalogenation in Antarctic melt pond sediments (2007) (3)
Anaerobic Bacteria and Processes (2015) (3)
Shewanella baltica Ecotypes Have Wide Transcriptional Variation under the Same Growth Conditions (2016) (3)
Metagenomics: The Paths Forward (2011) (3)
Classifying prokaryotic genomes using the Microbial Genomes Atlas (MiGA) webserver (2020) (3)
Global diversity and biogeography of bacterial communities in wastewater treatment plants (2019) (3)
Metabolism of Nitrilotriacetate by Cells of Pseudomonas Species (1973) (3)
Genomics: Toward a Genome‐Level Understanding of the Structure, Functions, and Evolution of Biological Systems (2005) (3)
Tracking microbial populations effective in reducing exposure. (1995) (3)
Isotope Exchange Studies on the Mechanism of Reduction of Nitric Oxide and Nitrite to Nitrous Oxide by Denitrifying Bacteria (2001) (3)
Probing the Functional Diversity of Global Pristine Soil Communities with 3-Chlorobenzoate Reveals that Communities of Generalists Dominate Catabolic Transformation (2013) (3)
Correction: Recently Deglaciated High-Altitude Soils of the Himalaya: Diverse Environments, Heterogenous Bacterial Communities and Long-Range Dust Inputs from the Upper Troposphere (2014) (3)
Editorial overview: Ecology and industrial microbiology. (2014) (3)
Bioreduction and immobilization of uranium in situ: A case study at a USA Department of Energy radioactive waste site, Oak Ridge, Tennessee (2011) (3)
Use of13N in Studies of Denitrification (1982) (2)
Microfluidic Systems Being Adapted for Microbial, Molecular Biological Analyses (2007) (2)
Nitrate-stimulated mineralization of ammonium in anaerobic soils (1979) (2)
Editorial: Environmental aspects of antibiotic resistance. (2019) (2)
Most Probable Number-Loop Mediated Isothermal Amplification (MPN-LAMP) for Quantifying Waterborne Pathogens in Less Than 25 Minutes (2016) (2)
Comparing faster evolving rplB and rpsC versus SSU rRNA for improved microbial community resolution (2018) (2)
Antibiotic Resistomes and Microbiomes in the Surface Water along the Code River in Indonesia Reflect Drainage Basin Anthropogenic Activities (2022) (2)
A gene-targeted approach to investigate the intestinal butyrate-producing bacterialcommunity (2013) (2)
Genomic and physiological perspectives on bioremediation processes at the FRC (2006) (2)
Correction to: The Microbiome of Eucalyptus Roots under Different Management Conditions and Its Potential for Biological Nitrogen Fixation (2017) (2)
Assessing Nitrogen Transformations in a Flooded Agroecosystem Using the Isotope Pairing Technique and Nitrogen Functional Gene Abundances (2014) (2)
Microbial biofilm communities in biological activated carbon fluidized bed reactors for treatment of groundwater contaminated with aromatic hydrocarbons (1995) (2)
Understanding the bioremediative potential of FRC microbial communities (2006) (2)
Development of phylogenetic probes specific to Burkholderia cepacia G4 (1995) (2)
Radiotracers from heavy-ion fragmentation (1985) (2)
Syntrophy of bacteria and archaea in the anaerobic catabolism of hydrocarbon contaminants (2022) (2)
Microbial community roles and chemical mechanisms in the parasitic development of Orobanche cumana (2022) (2)
Anaerobic dechlorination and the bioremediation of PCBs (1990) (2)
Microbial Ecology Biogeography : An Emerging Cornerstone for Understanding Prokaryotic Diversity , Ecology , and Evolution (2007) (2)
Influence of rhizosphere, root and P soil on fungal and bacterial communities associated with maize genotypes with contrasting P use efficiency. (2015) (2)
Acetate inhibition of methanogenic, syntrophic benzoate degradation. [Methanospirillum] (1988) (1)
Climate warming restructures seasonal dynamics of grassland soil microbial communities (2022) (1)
Antibiotic Resistance in Soil (2020) (1)
NITROGEN TRANSFORMATIONS IN FLOODED AGROECOSYSTEMS: A CASE STUDY WITH TARO (COLOCASSIA ESCULENTA) (2013) (1)
2,4-dichlorophenoxyacetate degraders in the real world, do we know who they are? (1994) (1)
Role of microorganisms in the protection of the environment. (1990) (1)
RefSoil: A reference database of soil microbial genomes (2016) (1)
Application of magnetic biochar/quaternary phosphonium salt to combat the antibiotic resistome in livestock wastewater. (2021) (1)
The Role of the Gut Microbiota in Ulcerative Colitis (2010) (1)
Tetracycline accumulation in biofilms enhances the selection pressure on Escherichia coli for expression of antibiotic resistance. (2022) (1)
Complete detoxification of short chain chlorinated aliphatic compounds: Isolation of halorespiring organisms and biochemical studies of the dehalogenating enzyme systems. 1998 annual progress report (1998) (1)
Spectroscopic and mechanistic studies of dissimilatory nitrite reductases. (1993) (1)
New Bacterial Taxonomy Assignment of rRNA Sequences into the Naïve Bayesian Classifier for Rapid (2014) (1)
Warming-induced permafrost thaw exacerbates tundra soil carbon decomposition mediated by microbial community (2020) (1)
Genome sequence of Desulfitobacterium hafnienseDCB-2, a Gram-positive anaerobe capable of dehalogenation and metal reduction (2012) (1)
Biodegradation of Metal-Nitrilotriacetate Complexes by a Pseudomonas Species: Mechanism of Reaction (1975) (1)
Adaptation ofDenitrifying Populations toLow SoilpHt (1985) (1)
A gas proportional counter system for the detection of 13N and other beta emitting gases (1984) (0)
Characterizationofabacterial community fromaNortheastSiberian seacoast permafrost sample (2010) (0)
Immunological Identification andDistribution ofDissimilatory Heme cdlandNonhemeCopper Nitrite Reductases in Denitrifying Bacteriat (1989) (0)
Microbial Community Dynamics and the Effect of Geochemistry in Uranium Bioremediation Revealed by Functional Gene Array Analysis (2008) (0)
Metagenomics-enabled understanding of the functions and activities of microbial communities at ERSP field research (2014) (0)
Letter from James M. Tiedje, Applied Microbiology to Joshua Lederberg (1974) (0)
Integrated genome-based studies of Shewanella Ecophysiology (2014) (0)
Amazon Rainforest Microbial Observatory Metagenomes (2010) (0)
Degradation ofEthylene Glycol andPolyethylene Glycols by Methanogenic Consortiat (1983) (0)
Plume control using bioaugmentation with halorespiring microorganisms (2002) (0)
Nitrate Method: Useofan N20-Producing Denitrifier toConvertNO3-or 15N03- toN20t (1988) (0)
Developments toward an integrated microbial database (1997) (0)
Psychrobacter arcticus 273-4 Uses Resource Efﬁciency and Molecular Motion Adaptations for Subzero Temperature Growth (cid:1) † (2009) (0)
The Microbiome of Eucalyptus Roots under Different Management Conditions and Its Potential for Biological Nitrogen Fixation (2017) (0)
Molecular analysis of soil bacterial communities following application of 2,4-Dichlorophenooxyacetate (2,4-D). (2008) (0)
Microbial responses to changes in land use (2011) (0)
Tol-4 . mineralization pathway in Azoarcus tolulyticus coenzyme A in the anaerobic toluene Evidence for acetyl coenzyme A and cinnamoyl (1995) (0)
Integrated Analysis of Protein Complexes and Regulatory Networks Involved in Anaerobic Energy Metabolism of Shewanella Oneidensis MR-1 (2005) (0)
Relating function and community structure of complex microbial systems using neural networks (2001) (0)
Metagenomic analysis of the rhizosphere and endosphere microbiome associated with maize genotypes with contrasting P use efficiency. (2015) (0)
Roadmap for naming uncultivated Archaea and Bacteria (2020) (0)
Role of the Environment in Emergence and Spread of Resistant Organisms and Genes (2018) (0)
Earth Science Research in the National Underground Science Laboratory at the Homestake Mine, South Dakota (2001) (0)
Strategies to improve reference databases for soil microbiomes (2016) (0)
A critical role of a eubiotic microbiota in gating proper immunocompetence in Arabidopsis (2023) (0)
Editorial overviewEnvironmental biotechnology (1995) (0)
Quantification of microRNAs directly from body fluids using a base-stacking isothermal amplification method in a point-of-care device (2017) (0)
Bacterial community composition of anthropogenic biochar and Amazonian anthrosols assessed by 16S rRNA gene 454 pyrosequencing (2013) (0)
Accelerated soil carbon loss by biological changes under warming in Alaskan tundra (2016) (0)
Noncompetitive microbial diversity patterns in soils: their causes and implications for bioremediation (2007) (0)
Stability, persistence and resilience in anaerobic reactors: a community unveiled (2001) (0)
Xander: employing a novel method for efficient gene-targeted metagenomic assembly (2015) (0)
ESA Report GENETICALLY ENGINEERED ORGANISMS AND THE ENVIRONMENT: CURRENT STATUS AND RECOMMENDATIONS 1 (2005) (0)
19th World Congress of Soil Science Symposium 2.3.2 Gene expression and proteomics in soil (0)
DOE-NABIR PI Workshop: Abstracts (2002) (0)
Metagenomic analysis reveals the shared and distinct features of the soil resistome across tundra, temperate prairie, and tropical ecosystems (2021) (0)
SI Aquaculture Resistome (2016) (0)
Methods for high-throughput massively parallel soil ecofunctional gene analysis (2017) (0)
Correction to: The Microbiome of Eucalyptus Roots under Different Management Conditions and Its Potential for Biological Nitrogen Fixation (2017) (0)
Mycobiome structure does not affect field litter decomposition in Eucalyptus and Acacia plantations (2023) (0)
Nonlinear Estimation of Monod Growth Kinetic Parameters from a Single Substrate Depletion Curve (1983) (0)
SA-1 Accuracy of Titanium Pyrosequencing in Functional Gene Amplicon Analysis(The 2nd Japan-Korea International Symposium on Microbial Ecology,Symposium A) (2010) (0)
Conserved phylogenetic distribution and limited antibiotic resistance of class 1 integrons revealed by assessing the bacterial genome and plasmid collection (2018) (0)
George Mercer Award: Lars Hedin (1997) (0)
Naı¨ve Bayesian Classiﬁer for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy (cid:1) † (2007) (0)
More replenishment than priming loss of soil organic carbon with additional carbon input (2018) (0)
The Chemistry of Biological Denitrification (1998) (0)
DE-FG 02-97 ER 62469 1997-2000 Noncompetitive microbial diversity patterns in soils : their causes and implications for bioremediation 2000-2003 Understanding the roles of spatial isolation and carbon in microbial community structure dynamics and activity for bioremediation 2003-2006 Towards underst (2007) (0)
Specific Deuteration ofDichlorobenzoate during Reductive Dehalogenation byDesulfomonile tiedjei inD20 (1992) (0)
Microbial-Community Sequencing 14 Ribosomal Database Project II : Sequences and Tools for High-Throughput rRNA Analysis (0)
Exploring the Genome and Proteome of Desulfitobacterium hafniense DCB2 for its Protein Complexes Involved in Metal Reduction and Dechlorination (2012) (0)
Global Diversity and Biogeography of the Bacterial Communities That Clean Our 1 Wastewater 2 3 4 (2019) (0)
Section 7 update: Multivariate statistical methods and artificial neural networks for analysis of microbial community molecular fingerprints (2004) (0)
In Memoriam: David D. Myrold (1955–2021) (2022) (0)
Experimental warming leads to convergent succession of grassland archaeal community (2023) (0)
Sorption, Uptake, and Translocation of Pharmaceuticals across Multiple Interfaces in Soil Environment (2015) (0)
Quantifying Nitrogen Loss From Flooded Hawaiian Taro Fields (2010) (0)
Metagenomics-Enabled Understanding of Soil Microbial Feedbacks to Climate Warming (2014) (0)
Microbial Metabolism: Benchmark Paper in Microbiology (1975) (0)
High-throughput quantiication of antibiotic resistance genes from an urban wastewater treatment plant (2016) (0)
Nonlinear Estimation ofMonodGrowthKinetic Parameters froma Single Substrate Depletion Curvet (1983) (0)
Identification of non-specific hybridization using an empirical equation fitted to non-equilibrium dissociation curves. (2012) (0)
Dechlorination of Aromatic Xenobiotic Compounds by Anaerobic Microorganisms (1988) (0)
UseofGeneProbes ToAidinRecovery andIdentification of Functionally Dominant2,4-Dichlorophenoxyacetic Degrading Populations inSoil (1994) (0)
Microbial Ecology Becomes the Official Journal of the International Society for Microbial Ecology (1999) (0)
Workshop: Graph compression approaches in assembly (2012) (0)
DETAILED PROGRAM: ASTROBIOLOGY AND SPACE MEDICINE WORKSHOP GRAZ 2015 WELCOME NOTE WELCOME NOTE AND INTRODUCTION (13.00-13.30) (2015) (0)
Species Dehalococcoides and Desulfuromonas Tetrachloroethene-Dechlorinating 16 S rRNA Gene-Based Detection of (2000) (0)
The Feasibility of Producing11C,13N,15O, and18F with Heavy-Ion Beams (1982) (0)
Effect of LSU and ITS genetic markers and reference databases on analyses of fungal communities (2018) (0)
Draft genome of the fungicidal biological control agent Burkholderia anthina strain XXVI (2018) (0)
MicroRNA-based host response to toxicant exposure is influenced by the presence of gut microbial populations. (2021) (0)
Metatranscriptional characterization of metabolic dynamics in anaerobic membrane bioreactor producing methane from low-strength wastewater. (2022) (0)
Climate warming accelerates temporal scaling of grassland soil microbial biodiversity (2019) (0)
Oral Session I 10 : 15 AM-12 : 30 PM Saturday March 12 McClung Auditorium 10 : 00 AM – Coffee Break 10 : 15 AM 1 : Metabolic Pathways Of Hydrocarbon-degrading Bacteria From The Deepwater Horizon Oil Spill (2016) (0)
Temporal ChangeinNitrous OxideandDinitrogen from Denitrification Following OnsetofAnaerobiosist (1979) (0)
Lower Soil Carbon Loss Due to Persistent Microbial Adaptation to Climate Warming (2020) (0)
Comparative genomic hybridizations using oligonucleotide microarrays to analyze conserved gene content in closely related Burkholderia strains (2007) (0)
Interrogating Microbial Communities (2008) (0)
TCDD administered on activated carbon eliminates bioavailability and subsequent shifts to a key murine gut commensal (2017) (0)
DNA encoding for an efficient 'Omics processing (2010) (0)
Molecular Approaches to Understanding C & N Dynamics in MArine Sediments (2007) (0)
Bacterial Community Assembly and Antibiotic Resistance Genes in Soils Exposed to Antibiotics at Environmentally Relevant Concentrations. (2023) (0)
Tropical agricultural land management in ﬂ uences on soil microbial communities through its effect on soil organic carbon Soil Biology & Biochemistry (2013) (0)
William S. Cooper Award: Christopher L. Fastie (1998) (0)
Sequencing Batch Reactors Phenol-plus-Trichloroethene-Fed in Phenol-and Structure and Function during Succession Correspondence between Community (2004) (0)
groundwater.reactors treating contaminated Channel structures in aerobic biofilms of (2013) (0)
Microarray-Based Analysis of Functional Genes in Sediments from the Gulf of Mexico (2007) (0)
Bacillus-Dominant Airborne Bacterial Communities Identified During Asian Dust Events (2019) (0)
Multiphasic analysis of the temporal development of the distal gut microbiota in patients following ileal pouch anal anastomosis (2013) (0)
Microbial Degradation ofEthylenediaminet etraacetate inSoils andSediments1 (1975) (0)
Future Perspectives: Genomics Beyond Single Cells (2005) (0)
Comparative Metagenomics of Microbial Communities from Pristine and Contaminated Groundwater (2008) (0)
denitrifying bacteria. reductase gene and its use as a probe for Isolation and characterization of a nitrite (2013) (0)
Soil microbes ready to stoke global warming (2020) (0)
Inﬂuence of Dangling Ends and Surface-Proximal Tails of Targets on Probe-Target Duplex Formation in 16S rRNA Gene-Based Diagnostic Arrays (cid:1) † (2007) (0)
Microarray-Based Analysis of Microbial Community Composition and Dynamics in Uranium Bioremediation (2007) (0)
A polymer microfluidic chip for quantitative detection of multiple water- and foodborne pathogens using real-time fluorogenic loop-mediated isothermal amplification (2012) (0)
Isolation andCharacterization ofaNitrite Reductase Geneand ItsUseasaProbeforDenitrifying Bacteriat (1992) (0)
In situ Bioreduction of Uranium ( VI ) to Submicromolar 1 Levels and Reoxidation by Dissolved Oxygen 2 Supporting Information 3 (2007) (0)
Acetate Inhibition ofMethanogenic, Syntrophic Benzoate Degradationt (1988) (0)
Hungry microbes in melting tundra could accelerate greenhouse effect (2020) (0)
Spectroscopic and mechanistic studies of Achromobacter cycloclastes nitrite reductase (1992) (0)
Understanding Barriers to Microbial Bioremedation (2006) (0)
CORRECTIONS (2003) (0)
Static self-directed sample dispensing into a series of reaction wells on a microfluidic card for parallel genetic detection of microbial pathogens (2015) (0)
H2180 Isotope Exchange Studies on the Mechanism of Reduction of Nitric Oxide and Nitrite to Nitrous Oxide by Denitrifying (1991) (0)
Anaerobic Dechlorination ofPolychlorobiphenyls (Aroclor 1242) by Pasteurized andEthanol-Treated Microorganisms fromSediments (1992) (0)
Metal stress alters a bacterial community's permissiveness towards plasmids (2014) (0)
Terragenome-The Soil Metagenome Network (2014) (0)
Dechlorination ofFourCommercial Polychlorinated Biphenyl Mixtures (Aroclors) byAnaerobic Microorganisms fromSedimentst (1990) (0)
THE FEASIBILITY OF PRODUCING 11C, 13N, 15O, AND 18F WITH HEAVY-ION BEAMS (1980) (0)
Title Stability , genotypic and phenotypic diversity of Shewanella baltica in the redox transition zone of the Baltic Sea Permalink (2014) (0)
Author Correction: Roadmap for naming uncultivated Archaea and Bacteria (2020) (0)
Peat Bogs SphagnumMethanotrophic Communities from (2014) (0)
Localization oftheCytochrome cdlandCopperNitrite Reductases inDenitrifying Bacteriat (1990) (0)
Incorporating Functional Gene Quantification into Traditional Decomposition Models (2014) (0)

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