Jed A. Fuhrman
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Biology
Jed A. Fuhrman's Degrees
- PhD Biological Oceanography University of California, Santa Barbara
- Masters Biological Oceanography University of California, Santa Barbara
- Bachelors Biology University of California, Santa Barbara
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(Suggest an Edit or Addition)Jed A. Fuhrman's Published Works
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Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Microbial biogeography: putting microorganisms on the map (2006) (2440)
- Marine viruses and their biogeochemical and ecological effects (1999) (2053)
- Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples. (2016) (1841)
- Thymidine incorporation as a measure of heterotrophic bacterioplankton production in marine surface waters: Evaluation and field results (1982) (1515)
- A communal catalogue reveals Earth’s multiscale microbial diversity (2017) (1501)
- Beyond biogeographic patterns: processes shaping the microbial landscape (2012) (1140)
- Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys (2015) (1061)
- Use of SYBR Green I for rapid epifluorescence counts of marine viruses and bacteria (1998) (988)
- Microbial community structure and its functional implications (2009) (981)
- Viral mortality of marine bacteria and cyanobacteria (1990) (973)
- Bacterioplankton Secondary Production Estimates for Coastal Waters of British Columbia, Antarctica, and California (1980) (934)
- Defining seasonal marine microbial community dynamics (2011) (857)
- Relationships between Biovolume and Biomass of Naturally Derived Marine Bacterioplankton (1987) (668)
- A latitudinal diversity gradient in planktonic marine bacteria (2008) (593)
- Minimum information about a marker gene sequence (MIMARKS) and minimum information about any (x) sequence (MIxS) specifications (2011) (588)
- Annually reoccurring bacterial communities are predictable from ocean conditions (2006) (566)
- Significance of Size and Nucleic Acid Content Heterogeneity as Measured by Flow Cytometry in Natural Planktonic Bacteria (1999) (530)
- Marine microbial community dynamics and their ecological interpretation (2015) (513)
- Marine bacterial, archaeal and protistan association networks reveal ecological linkages (2011) (508)
- Global Patterns of Bacterial Beta-Diversity in Seafloor and Seawater Ecosystems (2011) (505)
- Viruses and protists cause similar bacterial mortality in coastal seawater (1995) (479)
- Correlation detection strategies in microbial data sets vary widely in sensitivity and precision (2016) (471)
- Dominance of bacterial biomass in the Sargasso Sea and its ecological implications (1989) (375)
- Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific Oceans (1993) (370)
- Marine Planktonic Archaea Take Up Amino Acids (2000) (346)
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data (2017) (331)
- Combined Microautoradiography–16S rRNA Probe Technique for Determination of Radioisotope Uptake by Specific Microbial Cell Types In Situ (1999) (329)
- Viruses in Marine Planktonic Systems (1993) (310)
- Marine viruses and global climate change. (2011) (308)
- Global declines in oceanic nitrification rates as a consequence of ocean acidification (2010) (305)
- Virus decay and its causes in coastal waters (1997) (303)
- Extraction from Natural Planktonic Microorganisms of DNA Suitable for Molecular Biological Studies (1988) (294)
- Minimum Information about an Uncultivated Virus Genome (MIUViG) (2018) (286)
- Bacterioplankton Roles in Cycling of Organic Matter: The Microbial Food Web (1992) (282)
- Determination of Active Marine Bacterioplankton: a Comparison of Universal 16S rRNA Probes, Autoradiography, and Nucleoid Staining (1997) (276)
- Coupling 16S-ITS rDNA clone libraries and automated ribosomal intergenic spacer analysis to show marine microbial diversity: development and application to a time series. (2005) (273)
- Virus and prokaryote enumeration from planktonic aquatic environments by epifluorescence microscopy with SYBR Green I (2007) (266)
- Pronounced daily succession of phytoplankton, archaea and bacteria following a spring bloom (2016) (261)
- Unlocking the potential of metagenomics through replicated experimental design (2012) (259)
- A comparison of taxon co-occurrence patterns for macro- and microorganisms. (2007) (254)
- Top-down controls on bacterial community structure: microbial network analysis of bacteria, T4-like viruses and protists (2013) (251)
- Richness and Diversity of Bacterioplankton Species along an Estuarine Gradient in Moreton Bay, Australia (2004) (248)
- Silicibacter pomeroyi sp. nov. and Roseovarius nubinhibens sp. nov., dimethylsulfoniopropionate-demethylating bacteria from marine environments. (2003) (242)
- Local similarity analysis reveals unique associations among marine bacterioplankton species and environmental factors (2006) (235)
- Widespread Archaea and novel Bacteria from the deep sea as shown by 16S rRNA gene sequences (1997) (229)
- Bacterioplankton growth in seawater: I.Growth kinetics and cellular characteristics in seawater cultures (1984) (227)
- Proteorhodopsins: an array of physiological roles? (2008) (224)
- Re-examination of the relationship between marine virus and microbial cell abundances (2016) (220)
- Microbial community structure in the North Pacific ocean (2009) (211)
- Community structure of marine bacterioplankton: patterns, networks, and relationships to function (2008) (202)
- Bacterioplankton in the coastal euphotic zone: Distribution, activity and possible relationships with phytoplankton (1980) (201)
- Close coupling between release and uptake of dissolved free amino acids in seawater studied by an isotope dilution approach (1987) (201)
- Ecosystem Services for 2020 (2010) (194)
- Global biogeography of SAR11 marine bacteria (2012) (193)
- Tiered approach for identification of a human fecal pollution source at a recreational beach: case study at Avalon Bay, Catalina Island, California. (2003) (192)
- Virus‐like particle distribution and abundance in sediments and overlying waters along eutrophication gradients in two subtropical estuaries (2001) (191)
- Extended local similarity analysis (eLSA) of microbial community and other time series data with replicates (2011) (186)
- Phylogenetic diversity of subsurface marine microbial communities from the Atlantic and Pacific oceans (1993) (185)
- Identifying viruses from metagenomic data using deep learning (2020) (183)
- Alignment-free $d_2^*$ oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences. (2017) (182)
- Enteroviruses detected by reverse transcriptase polymerase chain reaction from the coastal waters of Santa Monica Bay, California: low correlation to bacterial indicator levels (2001) (180)
- A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes (2015) (179)
- Bacterial viruses in coastal seawater: lytic rather than lysogenic production (1994) (171)
- Influence of Method on the Apparent Size Distribution of Bacterioplankton Cells: Epifluorescence Microscopy Compared to Scanning Electron Microscopy (1981) (164)
- Multitiered Approach Using Quantitative PCR To Track Sources of Fecal Pollution Affecting Santa Monica Bay, California (2006) (163)
- The ocean sampling day consortium (2015) (162)
- Global distribution and diversity of marine Verrucomicrobia (2012) (159)
- Dependent coupling of inorganic and organic nitrogen uptake and regeneration in the plume of the Chesapeake Bay estuary and its regulation by large heterotrophs (1991) (157)
- Microzones surrounding phytoplankton form the basis for a stratified marine microbial ecosystem (1985) (154)
- Time- and sediment depth-related variations in bacterial diversity and community structure in subtidal sands (2009) (152)
- Seasonal and interannual variability of the marine bacterioplankton community throughout the water column over ten years (2014) (152)
- Burrowing deeper into benthic nitrogen cycling: the impact of bioturbation on nitrogen fixation coupled to sulfate reduction (2010) (150)
- Millions of reads, thousands of taxa: microbial community structure and associations analyzed via marker genes. (2016) (147)
- Do Bacteria-Sized Marine Eukaryotes Consume Significant Bacterial Production? (1984) (142)
- Calibrating estimates of phage-induced mortality in marine bacteria: Ultrastructural studies of marine bacteriophage development from one-step growth experiments (1993) (139)
- Temporal variability and coherence of euphotic zone bacterial communities over a decade in the Southern California Bight (2013) (137)
- Biological considerations in the measurement of dissolved free amino acids in seawater and implications for chemical and microbiological studies (1985) (134)
- Marine bacterial microdiversity as revealed by internal transcribed spacer analysis (2005) (134)
- Radioactively labeling of natural assemblages of bacterioplankton for use in trophic studies1 (1980) (132)
- Marine ecology: Microbial microdiversity (1998) (129)
- Diel variations in bacterioplankton, phytoplankton, and related parameters in the Southern California Bight. (1985) (129)
- Short-term observations of marine bacterial and viral communities: patterns, connections and resilience (2013) (129)
- Ecological dynamics and co-occurrence among marine phytoplankton, bacteria and myoviruses shows microdiversity matters (2017) (128)
- Rapid Detection of Enteroviruses in Small Volumes of Natural Waters by Real-Time Quantitative Reverse Transcriptase PCR (2005) (126)
- Wide‐ranging abundances of aerobic anoxygenic phototrophic bacteria in the world ocean revealed by epifluorescence microscopy and quantitative PCR (2005) (126)
- Microbial uptake of dissolved organic matter in Mcmurdo Sound, Antarctica (1981) (125)
- Rapid ammonium cycling and concentration‐dependent partitioning of ammonium and phosphate: Implications for carbon transfer in planktonic communities (1990) (121)
- Rapid Virus Production and Removal as Measured with Fluorescently Labeled Viruses as Tracers (2000) (121)
- Bacterial Diversity in Shallow Oligotrophic Marine Benthos and Overlying Waters: Effects of Virus Infection, Containment, and Nutrient Enrichment (2003) (119)
- Dissolved free amino acids in the Sargasso Sea: uptake and respiration rates, turnover times, and concentrations (1991) (118)
- DNA hybridization to compare species compositions of natural bacterioplankton assemblages (1990) (118)
- COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO‐alignment and paired‐end read LinkAge (2016) (117)
- Efficient statistical significance approximation for local similarity analysis of high-throughput time series data (2013) (111)
- Bacterivory in seawater studied with the use of inert fluorescent particles1 (1986) (111)
- Viral effects on bacterial community composition in marine plankton microcosms (2004) (107)
- Spatial and temporal variation of natural bacterioplankton assemblages studied by total genomic DNA cross‐hybridization (1991) (106)
- Accurate Genome Relative Abundance Estimation Based on Shotgun Metagenomic Reads (2011) (105)
- Roles of viral infection in organic particle flux (1991) (105)
- Viral Influence on Aquatic Bacterial Communities (2003) (105)
- Ecosystem services, targets, and indicators for the conservation and sustainable use of biodiversity (2011) (104)
- Improved Strategy for Comparing Microbial Assemblage Fingerprints (2006) (103)
- Breakdown and microbial uptake of marine viruses and other lysis products (1999) (102)
- Possible biogeochemical consequences of ocean fertilization (1991) (102)
- Evidence of Trichodesmium viral lysis and potential significance for biogeochemical cycling in the oligotrophic ocean (2004) (101)
- Temporal and spatial scales of variation in bacterioplankton assemblages of oligotrophic surface waters (2006) (98)
- Origins of Dissolved Organic Matter in Southern California Coastal Waters: Experiments on the Role of Zooplankton (1981) (98)
- Population ecology of nitrifying archaea and bacteria in the Southern California Bight. (2010) (98)
- Bacterial and Archaeal Community Structure and its Patterns (2008) (98)
- Diel changes in bacterial biomass and growth rates in coastal environments, determined by means of thymidine incorporation into DNA, frequency of dividing cells (FDC), and microautoradiography (1984) (97)
- A comparative study of culture-independent, library-independent genotypic methods of fecal source tracking. (2003) (97)
- Viriobenthos Production and Virioplankton Sorptive Scavenging by Suspended Sediment Particles in Coastal and Pelagic Waters (2003) (95)
- Mortality of marine bacteria in response to enrichments of the virus size fraction from seawater (1992) (93)
- Diversity and biogeography of bacterial assemblages in surface sediments across the San Pedro Basin, Southern California Borderlands. (2007) (89)
- Dissolved free amino acid cycling in an estuarine outflow plume (1990) (87)
- Remarkable heterogeneity in meso‐ and bathypelagic bacterioplankton assemblage composition (2006) (85)
- Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes (2018) (84)
- Enumeration of virus particles in aquatic or sediment samples by epifluorescence microscopy (2010) (82)
- Performance of viruses and bacteriophages for fecal source determination in a multi-laboratory, comparative study. (2013) (80)
- Increase in Fluorescence Intensity of 16S rRNA In Situ Hybridization in Natural Samples Treated with Chloramphenicol (1997) (79)
- Estimating maximal microbial growth rates from cultures, metagenomes, and single cells via codon usage patterns (2020) (79)
- Production, consumption and nutrient cycling in a laboratory mesocosm (1988) (78)
- Imperfect retention of natural bacterioplankton cells by glass fiber filters (1995) (78)
- Combined Microautoradiography–16S rRNA Probe Technique for Determination of Radioisotope Uptake by Specific Microbial Cell Types In Situ (1999) (78)
- Cross-depth analysis of marine bacterial networks suggests downward propagation of temporal changes (2015) (77)
- Marine microbial diversity studied via 16S rRNA sequences: cloning results from coastal waters and counting of native archaea with fluorescent single cell probes (1998) (77)
- Spatial and vertical biogeography of coral reef sediment bacterial and diazotroph communities (2006) (76)
- Clearance of bacteria-sized particles by natural populations of nanoplankton in the Chesapeake Bay outflow plume (1988) (75)
- Photosynthetic pigments in the ciliate Laboea strobila from Long Island Sound, USA (1986) (74)
- Seasonality and monthly dynamics of marine myovirus communities. (2012) (73)
- Beta diversity of marine bacteria depends on temporal scale. (2013) (72)
- Co-occurrence patterns for abundant marine archaeal and bacterial lineages in the deep chlorophyll maximum of coastal California (2011) (70)
- Structure of microbial communities in ethanol biofilters (2005) (66)
- Control of marine bacterioplankton populations: Measurement and significance of grazing (1988) (65)
- Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative (2018) (64)
- Centimeter scale vertical heterogeneity in bacteria and chlorophyll a (1989) (64)
- Effects of viral enrichment on the mortality and growth of heterotrophic bacterioplankton (1999) (63)
- Physics and microbial ecology of a buoyant estuarine plume on the continental shelf (1987) (63)
- Whither or wither geomicrobiology in the era of 'community metagenomics' (2005) (62)
- Use of 13N as tracer for bacterial and algal uptake of ammonium from sea-water (1988) (61)
- Measurement of Bacterioplankton Growth in the Sea and Its Regulation by Environmental Conditions (1984) (60)
- A network-based integrated framework for predicting virus–prokaryote interactions (2020) (58)
- Impact of light on marine bacterioplankton community structure (2005) (58)
- Mechanoreception in calanoid copepods (1986) (57)
- Microbial rhodopsins are major contributors to the solar energy captured in the sea (2019) (56)
- Genome sequences from the sea (2003) (55)
- Macroecological patterns of marine bacteria on a global scale (2013) (54)
- Short-term dynamics and interactions of marine protist communities during the spring–summer transition (2018) (53)
- Covariation of viral parameters with bacterial assemblage richness and diversity in the water column and sediments (2007) (52)
- Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes (2019) (52)
- Genome and epigenome of a novel marine Thaumarchaeota strain suggest viral infection, phosphorothioation DNA modification and multiple restriction systems (2017) (51)
- Proteorhodopsin light-enhanced growth linked to vitamin-B1 acquisition in marine Flavobacteria (2015) (50)
- Prokaryotic and viral diversity patterns in marine plankton (2002) (50)
- CAFE: aCcelerated Alignment-FrEe sequence analysis (2017) (50)
- Taxon Disappearance from Microbiome Analysis Reinforces the Value of Mock Communities as a Standard in Every Sequencing Run (2018) (48)
- Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling (2018) (47)
- Viral impacts upon marine bacterioplankton assemblage structure (2006) (47)
- Long-term nitrogen and phosphorus fertilization effects on N 2 fixation rates and nifH gene community patterns in mangrove sediments (2012) (45)
- Characterization of marine prokaryotic communities via DNA and RNA (1994) (45)
- Long-term stability and Red Queen-like strain dynamics in marine viruses (2019) (45)
- Genomics and Physiology of a Marine Flavobacterium Encoding a Proteorhodopsin and a Xanthorhodopsin-Like Protein (2013) (42)
- The founding charter of the Genomic Observatories Network (2014) (40)
- Global biogeography of SAR 11 marine bacteria (2012) (40)
- Marine archaeal dynamics and interactions with the microbial community over 5 years from surface to seafloor (2017) (40)
- Does adenine incorporation into nucleic acids measure total microbial production (1986) (39)
- Mosaic patterns of B‐vitamin synthesis and utilization in a natural marine microbial community (2018) (39)
- Community structure and function in prokaryotic marine plankton (2002) (39)
- Bacterial secondary production in freshwater measured by3H-thymidine incorporation method (1982) (37)
- Fluid-dynamics driving saline water in the North East German Basin (2005) (36)
- Multi-year dynamics of fine-scale marine cyanobacterial populations are more strongly explained by phage interactions than abiotic, bottom-up factors. (2019) (35)
- Strong Seasonality and Interannual Recurrence in Marine Myovirus Communities (2013) (35)
- Benchmarking microbial growth rate predictions from metagenomes (2020) (34)
- Identifying viruses from metagenomic data by deep learning. (2018) (34)
- Microbiological water quality at non-human influenced reference beaches in southern California during wet weather. (2010) (33)
- Mesoscale and seasonal variability of heterotrophic nanoflagellate abundance in an estuarine outflow plume (1990) (33)
- The Vertical Distribution and Diversity of Marine Bacteriophage at a Station off Southern California (2003) (32)
- Dilution reveals how viral lysis and grazing shape microbial communities (2016) (32)
- Viral and bacterial assemblage covariance in oligotrophic waters of the West Florida Shelf (Gulf of Mexico) (2006) (30)
- Diversity of virus-like agents killing Microcystis aeruginosa in a hyper-eutrophic pond (2006) (30)
- Prediction of virus-host infectious association by supervised learning methods (2017) (30)
- Influence of Amazon and Orinoco offshore surface water plumes on oligotrophic bacterioplankton diversity in the west tropical Atlantic (2006) (29)
- A dynamic programming algorithm for binning microbial community profiles (2006) (26)
- Optimizing de novo genome assembly from PCR-amplified metagenomes (2018) (25)
- Distribution of Extracellular Flavins in a Coastal Marine Basin and Their Relationship to Redox Gradients and Microbial Community Members. (2018) (25)
- Characterization of Lysogens in Bacterioplankton Assemblages of the Southern California Borderland (2007) (24)
- Marine alga Platymonas sp. accumulates silicon without apparent requirement (1978) (24)
- Adaptations of bacteria to marine subsurface waters studied by temperature response (1983) (23)
- Growth efficiencies of freshwater bacterioplankton (1992) (23)
- Zooplankton induced changes in dissolved free amino acids and in production rates of freshwater bacteria (1986) (23)
- Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP (2019) (22)
- The Earth Microbiome Project: The Meeting Report for the 1st International Earth Microbiome Project Conference, Shenzhen, China, June 13th-15th 2011 (2011) (21)
- Gyrotaxis as a new mechanism for generating spatial heterogeneity and migration in microplankton (1990) (21)
- Comprehensive single-PCR 16S and 18S rRNA community analysis validated with mock communities, and estimation of sequencing bias against 18S. (2021) (19)
- Planktonic food web structure at a coastal time-series site: I. Partitioning of microbial abundances and carbon biomass (2017) (18)
- Faculty Opinions recommendation of IMG/M: the integrated metagenome data management and comparative analysis system. (2012) (18)
- Ecosystem Services for 2020 - Response to Faith (2010) (17)
- Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences (2019) (17)
- Metagenomics and its connection to microbial community organization (2012) (17)
- Vertical and Seasonal Patterns Control Bacterioplankton Communities at Two Horizontally Coherent Coastal Upwelling Sites off Galicia (NW Spain) (2018) (16)
- Proteorhodopsins dominate the expression of phototrophic mechanisms in seasonal and dynamic marine picoplankton communities (2018) (16)
- Heterotrophic Planktonic Microbes: Virus, Bacteria, Archaea, and Protozoa (2016) (14)
- Evaluating and Improving Small Subunit rRNA PCR Primer Coverage for Bacteria, Archaea, and Eukaryotes Using Metagenomes from Global Ocean Surveys (2021) (14)
- Ribosome-linked mRNA-rRNA chimeras reveal active novel virus host associations (2020) (13)
- Bacterial community structure and its patterns. (2008) (13)
- Phylogenetic Diversity of Diazotrophs along an Experimental Nutrient Gradient in Mangrove Sediments (2015) (12)
- Effects of four organic pollutants on the growth of natural marine bacterioplankton populations (1988) (12)
- Adenine and total microbial production: A reply (1986) (12)
- The “Minimum Information about an ENvironmental Sequence” (MIENS) specification (2010) (11)
- Marine Bacterial, Archaeal, and Protistan Association Networks (2014) (11)
- Causative Agents of Bacterial Mortality and the Consequences to Marine Food Webs (1999) (10)
- Viruses, Bacteria, and the Microbial Loop (2008) (10)
- Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains (2015) (10)
- Influence of Light on Particulate Organic Matter Utilization by Attached and Free-Living Marine Bacteria (2019) (9)
- Applying “-omics” Data in Marine Microbial Oceanography (2013) (9)
- Influence of light on particulate organic matter utilization by attached and free-living marine bacteria (2019) (9)
- Re-examining the relationship between virus and microbial cell abundances in the global oceans (2015) (8)
- VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data (2017) (8)
- Gene cloning and production of active recombinant Brugia malayi microfilarial chitinase. (1996) (8)
- Mineralization potentials of aromatic hydrocarbons by estuarine microorganisms: variations with season, location, and bacterioplankton production (1988) (8)
- Comprehensive single-PCR 16S and 18S rRNA community analysis validated with mock communities and denoising algorithms (2019) (8)
- Microbial tropicalization driven by a strengthening western ocean boundary current (2020) (7)
- Community structure: bacteria and archaea. (2007) (6)
- DeepMicrobeFinder sorts metagenomes into prokaryotes, eukaryotes and viruses, with marine applications (2021) (6)
- Contrasting diversity patterns of prokaryotes and protists over time and depth at the San-Pedro Ocean Time series (2022) (6)
- Dynamics and interactions of highly resolved marine plankton via automated high-frequency sampling (2018) (6)
- Author Correction: Re-examination of the relationship between marine virus and microbial cell abundances (2017) (6)
- Alteration of Oceanic Nitrification Under Elevated Carbon Dioxide Concentrations (2008) (5)
- Normalizing Metagenomic Hi-C Data and Detecting Spurious Contacts Using Zero-Inflated Negative Binomial Regression (2022) (5)
- The contribution of phytoplankton to ocean density gradients (1989) (5)
- of Naturally Derived Marine Bacterioplankton Relationships between Biovolume and Biomass (2014) (5)
- Ecological Role of Viruses in Aquatic Ecosystems (2010) (5)
- A hydrocarbon contaminated aquifer reveals a Piggyback-the-Persistent viral strategy. (2019) (4)
- A non-tailed twist in the viral tale (2018) (4)
- VIRUSES SYSTEMS IN MARINE PLANKTONIC (1993) (4)
- Benchmarking metagenomic marine microbial growth prediction from codon usage bias and peak-to-trough ratios (2019) (3)
- Enterovirus detection by reverse transcriptase polymerase chain reaction from the coastal waters of southern California (2001) (3)
- Metagenomics and Quantitative Stable Isotope Probing Offer Insights into Metabolism of Polycyclic Aromatic Hydrocarbon Degraders in Chronically Polluted Seawater (2021) (3)
- Metagenomics and quantitative stable isotope probing offer insights into metabolism of polycyclic aromatic hydrocarbons degraders in chronically polluted seawater (2020) (3)
- Benchmarking Community-Wide Estimates of Growth Potential from Metagenomes Using Codon Usage Statistics (2022) (3)
- Oceans of Crenarchaeota: a Personal History Describing This Paradigm Shift: Studies of marine archaea during the past two decades unveil the distinctive biology of these diverse and abundant microorganisms (2011) (3)
- Nifty nanoplankton (2001) (3)
- Metagenomics and stable isotope probing offer insights into metabolism of polycyclic aromatic hydrocarbons degraders in chronically polluted seawater (2019) (3)
- Taxon disappearance from microbiome analysis indicates need for mock communities as a standard in every sequencing run (2017) (3)
- Marine proteorhodopsins rival photosynthesis in solar energy capture (2017) (3)
- Evaluating and Improving SSU rRNA PCR Primer Coverage via Metagenomes from Global Ocean Surveys (2020) (3)
- Immune lag is a major cost of prokaryotic adaptive immunity during viral outbreaks (2020) (3)
- Microbiological Water Quality at Non-Human Impacted Reference Beaches in Southern California During wet Weather (2009) (3)
- Computational methods for the analysis of tag sequences in metagenomics studies. (2012) (2)
- A Comprehensive Assessment of Biologicals Contained Within Commercial Airliner Cabin Air (2006) (2)
- A network-based integrated framework for predicting virus-host interactions (2018) (2)
- Estimating global variation in the maximum growth rates of eukaryotic microbes from cultures and metagenomes via codon usage patterns (2021) (2)
- Effects of phytoplankton, viral communities, and warming on free-living and particle-associated marine prokaryotic community structure (2022) (2)
- Composition and Biogeography of Planktonic Pro- and Eukaryotic Communities in the Atlantic Ocean: Primer Choice Matters (2022) (2)
- EMOSE (2017) Inter-Comparison of Marine Plankton Metagenomic Analysis Methods (2016) (2)
- CAFE : aCcelerated Alignment-FrEe sequence analysis : Supplementary Material (2017) (2)
- HiCzin: Normalizing metagenomic Hi-C data and detecting spurious contacts using zero-inflated negative binomial regression (2021) (2)
- Faculty of 1000 evaluation for Major role of nitrite-oxidizing bacteria in dark ocean carbon fixation. (2018) (1)
- Prediction of virus-host infectious association by supervised learning methods (2017) (1)
- Long-term stability and Red Queen-like strain dynamics in marine viruses (2019) (1)
- Multi-tiered approach using quantitative polymerase chain reaction for tracking sources of fecal pollution to Santa Monica Bay , California (2005) (1)
- Role of bacteria in polluted marine ecosystems. ed R Colwell (1983) (1)
- Towards enhanced and interpretable clustering/classification in integrative genomics (2017) (1)
- Dynamic marine viral infections and major contribution to photosynthetic processes shown by regional and seasonal picoplankton metatranscriptomes (2017) (1)
- Metatranscriptomic analysis of marine Thaumarchaea suggests intra-phylum variability in in situ heterotrophic carbon and nitrogen metabolim (2016) (1)
- Phage–bacterial contig association prediction with a convolutional neural network (2022) (1)
- Section 8 update: Correlating single-cell count with function in mixed natural microbial communities through STARFISH (2004) (1)
- Mosaic Patterns of B-vitamin Synthesis and Utilization in a Natural Marine Microbial Community (2018) (1)
- Small-scale spatial variations in bacterioplankton community structure at the San Pedro Ocean Time Series station off the coast of Southern California (2020) (0)
- The complete genome of a new marine Thaumarchaea strain contains evidence of previous virus infection and a possible defense mechanism from infection (2016) (0)
- In Situ Viral Dynamics off the Coast of Southern California using Transcriptomes from Automated High-Frequency Sampling (2020) (0)
- A A Davis Pacific Oceans . microbial communities from the Atlantic and Phylogenetic diversity of subsurface marine (1993) (0)
- Temporal Dynamics of the Diazotroph UCYN-A and its Known and Possible Hosts over 10 Years at the San Pedro Ocean Time-series (SPOT) (2020) (0)
- Modeling the effects of free-living marine bacterial community composition on heterotrophic remineralization rates and biogeochemical carbon cycling (2016) (0)
- Dynamic marine viral infections and major contribution to photosynthetic processes shown by spatiotemporal picoplankton metatranscriptomes (2019) (0)
- Faculty Opinions recommendation of Light stimulates growth of proteorhodopsin-containing marine Flavobacteria. (2012) (0)
- Faculty of 1000 evaluation for The microbial engines that drive Earth's biogeochemical cycles. (2012) (0)
- Corrigendum to: Assessment of metagenomic assemblers based on hybrid reads of real and simulated metagenomic sequences (2020) (0)
- Long-term dynamics of phytoplankton, protistan, and prokaryotic communities at the San Pedro Ocean Time-series (2020) (0)
- Author Correction: Re-examination of the relationship between marine virus and microbial cell abundances (2017) (0)
- Marine Planktonic Archaea Take Up Amino Acids (2001) (0)
- A dynamic programming algorithm for binning microbial community profiles (2006) (0)
- Does bioturbation influence bacterial community structure in intertidal sands? Results from a large scale lugworm exclusion experiment in the German Wadden Sea (2007) (0)
- Bacterial Growth in the Sea (2001) (0)
- Using DNA to Predict How Fast Bacteria can Grow (2022) (0)
- Faculty Opinions recommendation of The importance of metagenomic surveys to microbial ecology: or why Darwin would have been a metagenomic scientist. (2012) (0)
- Benchmarking microbial growth rate predictions from metagenomes (2020) (0)
- Viruses in the Marine Environment (2003) (0)
- EBI analysis pipeline (2017) (0)
- Analysis of bacterial community composition through clone libraries and ARISA fingerprinting in the NW coast of the Iberian Peninsula (2013) (0)
- A non-tailed twist in the viral tale. (2018) (0)
- Faculty of 1000 evaluation for A phylogeny-driven genomic encyclopaedia of Bacteria and Archaea. (2012) (0)
- Faculty Opinions recommendation of Diet drives convergence in gut microbiome functions across mammalian phylogeny and within humans. (2012) (0)
- Diverse Marine T4-like Cyanophage Communities Are Primarily Comprised of Low-Abundance Species Including Species with Distinct Seasonal, Persistent, Occasional, or Sporadic Dynamics (2023) (0)
- Vertical and Seasonal Patterns Control Bacterioplankton Communities at Two Horizontally Coherent Coastal Upwelling Sites off Galicia (NW Spain) (2018) (0)
- Constraining the composition and quantity of organic matter used by abundant marine Thaumarchaeota. (2022) (0)
- ViralCC retrieves complete viral genomes and virus-host pairs from metagenomic Hi-C data (2023) (0)
- Faculty Opinions recommendation of Scientists' warning to humanity: microorganisms and climate change. (2019) (0)
- Fuhrman Lab 515F-926R 16S and 18S rRNA Gene Sequencing Protocol v2 (2018) (0)
- Single-cell measurement of archaeal and bacterial carbon assimilation in dark Pacific Ocean waters (2016) (0)
- Communitiesin Marine Myovirus Strong Seasonality and Interannual (2013) (0)
- Short-term dynamics and interactions of marine protist communities during the spring–summer transition (2018) (0)
- Faculty of 1000 evaluation for New processes and players in the nitrogen cycle: the microbial ecology of anaerobic and archaeal ammonia oxidation. (2012) (0)
- Statistical significance approximation in local trend analysis of high-throughput time-series data using the theory of Markov chains (2015) (0)
- Brainstorming - Questions to address (2017) (0)
- Faculty Opinions recommendation of Spatial patterns of bacterial richness and evenness in the NW Mediterranean Sea explored by pyrosequencing of the 16S rRNA. (2012) (0)
- Discovery of several novel, widespread, and ecologically distinct marine Thaumarchaeota viruses that encode amoC nitrification genes (2018) (0)
- Spatial and temporal variability of bacterioplanktyon community structure and function in the North-West coast of the Iberian Peninsula (2013) (0)
- Faculty Opinions recommendation of Recurrent microbial community types driven by nearshore and seasonal processes in coastal Southern California. (0)
- Symbiotic diazotrophic UCYN-A strains co-occurred with El Niño, relaxed upwelling, and varied eukaryotes over 10 years off Southern California Bight (2022) (0)
- Hackathon (Porto, 11-15 September 2017) (2017) (0)
- Genome and metagenome enabled analyses reveal new insight into the global biogeography and potential urea utilization in marine Thaumarchaeota. (2016) (0)
- Data - Banyuls comparative experiment (2017) (0)
- Diel cycles of dissolved B-Vitamins in the coastal ocean (2012) (0)
- Dynamics of finely resolved, abundant symbiotic marine plankton and other interacting microbes via automated high-frequency sampling (2017) (0)
- Atlantic and Pacific Ocean bacterioplankton diversity (2020) (0)
- Testing model predictions and revealing basin-scale biogeography with whole-community PCR amplicons from GEOTRACES (2020) (0)
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What Schools Are Affiliated With Jed A. Fuhrman?
Jed A. Fuhrman is affiliated with the following schools:
