Jennifer Pett-Ridge
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#2235
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Soil Science
#55
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#63
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Environmental Science
#145
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#147
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Jennifer Pett-Ridgebiology Degrees
Biology
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#14329
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Microbiology
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Ecology
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Earth Sciences Biology
Jennifer Pett-Ridge's Degrees
- PhD Soil Science University of California, Davis
- Masters Soil Science University of California, Davis
- Bachelors Environmental Science University of California, Berkeley
Why Is Jennifer Pett-Ridge Influential?
(Suggest an Edit or Addition)According to Wikipedia, Jennifer Pett-Ridge is an American biologist who is a senior staff scientist at the Lawrence Livermore National Laboratory. She also serves as an adjunct professor at the University of California, Merced. Her research makes use of systems biology and geochemistry to uncover function in microbial communities. She was awarded a 2021 United States Department of Energy Ernest Orlando Lawrence Award.
Jennifer Pett-Ridge's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- A conditioned dendritic cell can be a temporal bridge between a CD4+ T-helper and a T-killer cell (1998) (2713)
- Neonatal Tolerance Revisited: Turning on Newborn T Cells with Dendritic Cells (1996) (817)
- Mineral protection of soil carbon counteracted by root exudates (2015) (558)
- A Bacterium That Can Grow by Using Arsenic Instead of Phosphorus (2011) (457)
- A genomic catalog of Earth’s microbiomes (2020) (295)
- An arbuscular mycorrhizal fungus significantly modifies the soil bacterial community and nitrogen cycling during litter decomposition. (2013) (250)
- Linking Microbial Phylogeny to Metabolic Activity at the Single-Cell Level by Using Enhanced Element Labeling-Catalyzed Reporter Deposition Fluorescence In Situ Hybridization (EL-FISH) and NanoSIMS (2008) (231)
- Integrating microbial ecology into ecosystem models: challenges and priorities (2012) (224)
- Structural details of an interaction between cardiolipin and an integral membrane protein. (1999) (221)
- Redox Fluctuation Structures Microbial Communities in a Wet Tropical Soil (2005) (210)
- Successional Trajectories of Rhizosphere Bacterial Communities over Consecutive Seasons (2015) (201)
- Nano-scale secondary ion mass spectrometry — A new analytical tool in biogeochemistry and soil ecology: A review article (2006) (186)
- Redox Fluctuations Frame Microbial Community Impacts on N-cycling Rates in a Humid Tropical Forest Soil (2006) (170)
- Long-term litter decomposition controlled by manganese redox cycling (2015) (163)
- Carbon and nitrogen fixation and metabolite exchange in and between individual cells of Anabaena oscillarioides (2007) (159)
- Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry (2009) (159)
- PLANT AND MICROBIAL CONTROLS ON NITROGEN RETENTION AND LOSS IN A HUMID TROPICAL FOREST. (2008) (145)
- Evaluating the source of streamwater nitrate using δ15N and δ18O in nitrate in two watersheds in New Hampshire, USA (2004) (141)
- Influence of spatial configuration of carcinoma cell populations on the expression of a tumor-associated glycoprotein. (1985) (139)
- A trade-off between plant and soil carbon storage under elevated CO2 (2021) (132)
- Life and death in the soil microbiome: how ecological processes influence biogeochemistry (2022) (124)
- Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs (2016) (124)
- A multicopper oxidase is essential for manganese oxidation and laccase-like activity in Pedomicrobium sp. ACM 3067. (2007) (115)
- Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil (2019) (111)
- Niche differentiation is spatially and temporally regulated in the rhizosphere (2019) (109)
- Evidence for foliar endophytic nitrogen fixation in a widely distributed subalpine conifer. (2016) (109)
- The DMSO Reductase Family of Microbial Molybdenum Enzymes; Molecular Properties and Role in the Dissimilatory Reduction of Toxic Elements (2002) (107)
- Nano-scale investigation of the association of microbial nitrogen residues with iron (hydr)oxides in a forest soil O-horizon (2012) (105)
- Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass. (2016) (99)
- Cyanobacterial reuse of extracellular organic carbon in microbial mats (2015) (94)
- Definition of a human T cell epitope from influenza A non-structural protein 1 using HLA-A2.1 transgenic mice. (1995) (94)
- NanoSIP: NanoSIMS applications for microbial biology. (2012) (92)
- Tracking microbial interactions with NanoSIMS. (2016) (87)
- Testing Time-, Ignorance-, and Danger-Based Models of Tolerance (2001) (81)
- Sub-cellular metal imaging identifies dynamic sites of Cu accumulation in Chlamydomonas (2014) (80)
- Advances in the Analysis of Biogeochemical Interfaces: NanoSIMS to Investigate Soil Microenvironments (2012) (79)
- Ecological and Genomic Attributes of Novel Bacterial Taxa That Thrive in Subsurface Soil Horizons (2019) (75)
- Compartmentalized microbial composition, oxygen gradients and nitrogen fixation in the gut of Odontotaenius disjunctus (2013) (73)
- Influenza A-specific, HLA-A2.1-restricted cytotoxic T lymphocytes from HLA-A2.1 transgenic mice recognize fragments of the M1 protein. (1991) (71)
- Estimating taxon‐specific population dynamics in diverse microbial communities (2018) (70)
- Microbial community assembly differs across minerals in a rhizosphere microcosm (2018) (70)
- Structural studies of wild-type and mutant reaction centers from an antenna-deficient strain of Rhodobacter sphaeroides: monitoring the optical properties of the complex from bacterial cell to crystal. (1998) (67)
- On the lifespan of virgin T lymphocytes. (1999) (67)
- Using stable isotopes to explore root-microbe-mineral interactions in soil (2017) (67)
- Redox fluctuations control the coupled cycling of iron and carbon in tropical forest soils (2018) (65)
- Identification of a novel cyanobacterial group as active diazotrophs in a coastal microbial mat using NanoSIMS analysis (2012) (64)
- High-throughput isotopic analysis of RNA microarrays to quantify microbial resource use (2011) (63)
- Revisiting N2 fixation in Guerrero Negro intertidal microbial mats with a functional single-cell approach (2014) (63)
- Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies (2019) (62)
- Influence of oxic/anoxic fluctuations on ammonia oxidizers and nitrification potential in a wet tropical soil. (2013) (59)
- Ubiquinone binding, ubiquinone exclusion, and detailed cofactor conformation in a mutant bacterial reaction center. (2000) (59)
- Fermentation couples Chloroflexi and sulfate-reducing bacteria to Cyanobacteria in hypersaline microbial mats (2013) (58)
- Getting to Neutral: Options for Negative Carbon Emissions in California (2019) (58)
- Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil (2020) (57)
- Anoxic carbon flux in photosynthetic microbial mats as revealed by metatranscriptomics (2012) (56)
- Evolutionary history constrains microbial traits across environmental variation (2019) (55)
- EcoFABs: advancing microbiome science through standardized fabricated ecosystems (2019) (53)
- Identification by site-directed mutagenesis of amino acid residues contributing to serologic and CTL-defined epitope differences between HLA-A2.1 and HLA-A2.3. (1988) (52)
- Low frequency vibrational modes in proteins: changes induced by point-mutations in the protein-cofactor matrix of bacterial reaction centers. (1998) (51)
- Predictive genomic traits for bacterial growth in culture versus actual growth in soil (2019) (50)
- Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle (2019) (50)
- Hydrogen production in photosynthetic microbial mats in the Elkhorn Slough estuary, Monterey Bay (2011) (49)
- Natural abundance 15N in soil and litter across a nitrate-output gradient in New Hampshire (2007) (48)
- Microbial extracellular polysaccharide production and aggregate stability controlled by Switchgrass (Panicum virgatum) root biomass and soil water potential (2019) (44)
- Subcellular metal imaging identifies dynamic sites of Cu accumulation in Chlamydomonas. (2015) (43)
- A panel of unique HLA-A2 mutant molecules define epitopes recognized by HLA-A2-specific antibodies and cytotoxic T lymphocytes. (1989) (43)
- Consistent selection of mutations in the 5′‐untranslated region of oral poliovirus vaccine upon passaging in vitro (1994) (42)
- Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations (2020) (40)
- Species specificity in the interaction of CD8 with the alpha 3 domain of MHC class I molecules. (1992) (39)
- Molybdenum-Based Diazotrophy in a Sphagnum Peatland in Northern Minnesota (2017) (39)
- From pools to flow: The PROMISE framework for new insights on soil carbon cycling in a changing world (2020) (39)
- Diversity and dominance among TCR recognizing HLA-A2.1+ influenza matrix peptide in human MHC class I transgenic mice. (1994) (39)
- Mutations that modify or exclude binding of the QA ubiquinone and carotenoid in the reaction center from Rhodobacter sphaeroides (2004) (37)
- Correlated SEM, FIB-SEM, TEM, and NanoSIMS Imaging of Microbes from the Hindgut of a Lower Termite: Methods for In Situ Functional and Ecological Studies of Uncultivable Microbes (2013) (35)
- Attachment between heterotrophic bacteria and microalgae influences symbiotic microscale interactions (2018) (34)
- Phylogenetic Patterns in the Microbial Response to Resource Availability: Amino Acid Incorporation in San Francisco Bay (2014) (34)
- Identification of Desulfobacterales as primary hydrogenotrophs in a complex microbial mat community (2014) (33)
- Response to Comments on “A Bacterium That Can Grow Using Arsenic Instead of Phosphorus” (2011) (31)
- Phylogenetically conserved resource partitioning in the coastal microbial loop (2017) (31)
- Manganese co-localizes with calcium and phosphorus in Chlamydomonas acidocalcisomes and is mobilized in manganese-deficient conditions (2019) (31)
- Nutrients cause consolidation of soil carbon flux to small proportion of bacterial community (2021) (30)
- Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop (2021) (30)
- The Functional Significance of Bacterial Predators (2021) (30)
- Syntrophic metabolism of a co-culture containing Clostridium cellulolyticum and Rhodopseudomonas palustris for hydrogen production (2012) (29)
- Active virus-host interactions at sub-freezing temperatures in Arctic peat soil (2021) (29)
- The temperature sensitivity of soil: microbial biodiversity, growth, and carbon mineralization (2021) (29)
- Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton (2016) (28)
- Structural consequences of the replacement of glycine M203 with aspartic acid in the reaction center from Rhodobacter sphaeroides. (2000) (28)
- Hyphae move matter and microbes to mineral microsites: Integrating the hyphosphere into conceptual models of soil organic matter stabilization (2022) (28)
- The first non-turnover voltammetric response from a molybdenum enzyme: direct electrochemistry of dimethylsulfoxide reductase from Rhodobactercapsulatus (2002) (28)
- Taxon-specific C/N relative use efficiency for amino acids in an estuarine community. (2012) (26)
- Propagation and properties of Kaposi's sarcoma-derived cell lines obtained from patients with AIDS: similarity of cultured cells to smooth muscle cells. (1991) (26)
- Ensuring planetary survival: the centrality of organic carbon in balancing the multifunctional nature of soils (2022) (25)
- Continental-scale patterns of extracellular enzyme activity in the subsoil: an overlooked reservoir of microbial activity (2020) (24)
- Plant roots alter microbial functional genes supporting root litter decomposition (2018) (23)
- Routes to roots: direct evidence of water transport by arbuscular mycorrhizal fungi to host plants (2020) (23)
- Characterizing Chemoautotrophy and Heterotrophy in Marine Archaea and Bacteria With Single-Cell Multi-isotope NanoSIP (2019) (22)
- Site-directed mutagenesis of dimethyl sulfoxide reductase from Rhodobacter capsulatus: characterization of a Y114 --> F mutant. (2002) (22)
- Rhizosphere Carbon Turnover from Cradle to Grave: The Role of Microbe–Plant Interactions (2020) (21)
- Phosphorus Fractionation Responds to Dynamic Redox Conditions in a Humid Tropical Forest Soil (2018) (21)
- Monoclonal antibodies to a rat colon carcinoma: model for monoclonal antibody therapy of solid tumors. (1989) (21)
- Proliferative variability of endothelial clones derived from adult bovine aorta: Influence of fibroblast growth factor and smooth muscle cell extracellular matrix (1983) (20)
- Quantifying the effects of switchgrass (Panicum virgatum) on deep organic C stocks using natural abundance 14C in three marginal soils (2020) (19)
- Multimodal LA-ICP-MS and nanoSIMS imaging enables copper mapping within photoreceptor megamitochondria in a zebrafish model of Menkes disease. (2018) (19)
- Stable-Isotope-Informed, Genome-Resolved Metagenomics Uncovers Potential Cross-Kingdom Interactions in Rhizosphere Soil (2021) (18)
- Experimental testing of hypotheses for temperature- and pH-based niche specialisation of ammonia oxidising archaea and bacteria. (2020) (18)
- Light Regimes Shape Utilization of Extracellular Organic C and N in a Cyanobacterial Biofilm (2016) (18)
- Interferon-γ Induces Altered Oncogene Expression and Terminal Differentiation in A431 Cells 1 (1987) (17)
- Active site heterogeneity in dimethyl sulfoxide reductase from Rhodobacter capsulatus revealed by Raman spectroscopy. (2001) (16)
- The role of soil redox conditions in microbial phosphorus cycling in humid tropical forests. (2019) (16)
- Cytotoxic T lymphocyte-defined epitope differences between HLA-A2.1 and HLA-A2.2 map to two distinct regions of the molecule. (1988) (16)
- System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris (2018) (16)
- Fungal-Bacterial Cooccurrence Patterns Differ between Arbuscular Mycorrhizal Fungi and Nonmycorrhizal Fungi across Soil Niches (2021) (16)
- Differential effects of redox conditions on the decomposition of litter and soil organic matter (2020) (15)
- The Global Distribution, Formation, and Fate of Mineral‐Associated Soil Organic Matter Under a Changing Climate – A Trait‐Based Perspective (2022) (15)
- Root carbon interaction with soil minerals is dynamic, leaving a legacy of microbially-derived residues (2021) (14)
- Measurement Error and Resolution in Quantitative Stable Isotope Probing: Implications for Experimental Design (2020) (14)
- Sex differences in NMDA receptor expression in human alcoholics. (2009) (14)
- Survival, Growth, and Ecosystem Dynamics of Displaced Bromeliads in a Montane Tropical Forest1 (2002) (13)
- Deep-C storage: Biological, chemical and physical strategies to enhance carbon stocks in agricultural subsoils (2022) (13)
- VirION2: a short- and long-read sequencing and informatics workflow to study the genomic diversity of viruses in nature (2020) (13)
- Soil Oxygen Limits Microbial Phosphorus Utilization in Humid Tropical Forest Soils (2018) (12)
- The Switchgrass Microbiome: A Review of Structure, Function, and Taxonomic Distribution (2020) (12)
- Spatial turnover of soil viral populations and genotypes overlain by cohesive responses to moisture in grasslands (2022) (12)
- An examination of how structural changes can affect the rate of electron transfer in a mutated bacterial photoreaction centre. (2000) (12)
- The use of flow cytometry and cell sorting in a human colon carcinoma model. (1985) (12)
- Belowground allocation and dynamics of recently fixed plant carbon in a California annual grassland soil (2021) (11)
- Nitrogen mineralization and assimilation at millimeter scales. (2011) (11)
- Rock weathering controls the potential for soil carbon storage at a continental scale (2021) (11)
- An examination of how structural changes can affect the rate of electron transfer in a mutated bacterial photoreaction centre (2000) (11)
- Spectroscopic and Kinetic Studies of Y114F and W116F Mutants of Me2SO Reductase from Rhodobacter capsulatus* (2007) (11)
- Metagenome Sequencing of a Coastal Marine Microbial Community from Monterey Bay, California (2015) (10)
- Stable isotope informed genome-resolved metagenomics uncovers potential trophic interactions in rhizosphere soil (2020) (9)
- Interferon-gamma induces altered oncogene expression and terminal differentiation in A431 cells. (1987) (9)
- Development of Standards for NanoSIMS Analyses of Biological Materials (2008) (8)
- Plants and mycorrhizal symbionts acquire substantial soil nitrogen from gaseous ammonia transport. (2021) (8)
- Cortical NMDA Receptor Expression in Human Chronic Alcoholism: Influence of the TaqIA Allele of ANKK1 (2009) (8)
- Dynamics of differentiation in human epidermoid squamous carcinoma cells (A431) with continuous, long-term γ-IFN treatment (1991) (8)
- Crystallographic studies of mutant reaction centres from Rhodobacter sphaeroides (1998) (7)
- On the efficiency of energy transfer and the different pathways of electron transfer in mutant reaction centers of Rhodobacter sphaeroides (1998) (7)
- An essential role for tungsten in the ecology and evolution of a previously uncultivated lineage of anaerobic, thermophilic Archaea (2022) (7)
- Quantitative Stable-Isotope Probing (qSIP) with Metagenomics Links Microbial Physiology and Activity to Soil Moisture in Mediterranean-Climate Grassland Ecosystems (2022) (6)
- Effects of mutagenesis on the detailed structure of spheroidenone in the Rhodobacter sphaeroides reaction centre examined by resonance Raman spectroscopy (1999) (6)
- Decreased growth of wild soil microbes after 15 years of transplant‐induced warming in a montane meadow (2021) (6)
- Immunological tolerance [1] (1996) (6)
- Draft Genome Sequence of an Oscillatorian Cyanobacterium, Strain ESFC-1 (2013) (5)
- Effects of γ-IFN and NGF on subpopulations in a human neuroblastoma cell line: Flow cytometric and morphological analysis (1996) (5)
- Active microbial biomass decreases, but microbial growth potential remains similar across soil depth profiles under deeply- vs. shallow-rooted plants (2021) (5)
- Plant-associated fungi support bacterial resilience following water limitation (2022) (5)
- Label-Free Multiphoton Imaging of Microbes in Root, Mineral, and Soil Matrices with Time-Gated Coherent Raman and Fluorescence Lifetime Imaging. (2022) (5)
- An arbuscular mycorrhizal fungus modifies the soil microbial community and nitrogen cycling during litter decomposition (2012) (5)
- Conversion of marginal land into switchgrass conditionally accrues soil carbon but reduces methane consumption (2020) (5)
- iVirus 2.0: Cyberinfrastructure-supported tools and data to power DNA virus ecology (2021) (5)
- Defining the Sphagnum Core Microbiome across the North American Continent Reveals a Central Role for Diazotrophic Methanotrophs in the Nitrogen and Carbon Cycles of Boreal Peatland Ecosystems (2022) (5)
- Response: Immunological Tolerance (1996) (5)
- Permanent draft genome of strain ESFC-1: ecological genomics of a newly discovered lineage of filamentous diazotrophic cyanobacteria (2016) (5)
- Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations (2021) (5)
- Erratum: Subcellular metal imaging identifies dynamic sites of Cu accumulation in Chlamydomonas (Nature Chemical Biology (2014) 10 (1034-1042)) (2015) (4)
- Pharmacokinetic studies of mouse monoclonal antibodies to a rat colon carcinoma: I. Comparison of biodistribution in normal rats, syngeneic tumor-bearing rats, or tumor-bearing nude mice. (1990) (4)
- Functional succession of actively growing soil microorganisms during rewetting is shaped by precipitation history (2022) (4)
- HT-SIP: A semi-automated Stable Isotope Probing pipeline identifies interactions in the hyphosphere of arbuscular mycorrhizal fungi (2022) (4)
- Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate (2017) (4)
- Thousands of small, novel genes predicted in global phage genomes. (2022) (4)
- Chip-SIP: Stable Isotope Probing Analyzed with rRNA-Targeted Microarrays and NanoSIMS. (2019) (4)
- Research for Sustainable Bioenergy: Linking Genomic and Ecosystem Sciences, Workshop, October 2-4, 2013 Report (2014) (3)
- Metagenomics reveals niche partitioning within the phototrophic zone of a microbial mat (2017) (3)
- Linear dichroism of membrane-bound reaction centers from Rhodobacter sphaeroides: Alterations of the B band induced by site-specific mutations (1998) (3)
- Cytotoxic T Cell Responses Against Human Class I Molecules in Normal and HLA-A2.1 Transgenic Mice (1990) (3)
- Protist diversity and community complexity in the rhizosphere of switchgrass are dynamic as plants develop (2021) (3)
- Carbon Sink Strength of Subsurface Horizons in Brazilian Oxisols (2018) (2)
- Stability of the prion protein-encoding (PRNP) gene in HeLa cells. (2003) (2)
- Author Correction: Nutrients cause consolidation of soil carbon flux to small proportion of bacterial community (2021) (2)
- Active populations and growth of soil microorganisms are framed by mean annual precipitation in three California annual grasslands (2021) (2)
- Biochemistry for health professionals (2011) (2)
- Managing Plant Microbiomes for Sustainable Biofuel Production (2021) (2)
- Life history strategies among soil bacteria—dichotomy for few, continuum for many (2023) (2)
- Isotope-enrichment reveals active viruses follow microbial host dynamics during rewetting of a California grassland soil (2022) (2)
- Alphaproteobacteria fix nitrogen in a Sphagnum -dominated peat bog using molybdenum-dependent nitrogenase (2017) (2)
- Genetic modulation of amino acid transmitter receptor subunit expression in alcoholic human brain (2007) (2)
- Taxon-specific microbial growth and mortality patterns reveal distinct temporal population responses to rewetting in a California grassland soil (2020) (2)
- Root Carbon Interaction with Soil Minerals Is Dynamic, Leaving a Legacy of Microbially Derived Residues. (2021) (2)
- Community RNA-Seq: multi-kingdom responses to living versus decaying roots in soil (2021) (2)
- Glutamate and ethanol: The role of ionotropic NMDA glutamate receptors in alcoholism (2008) (2)
- NanoSIMS Analyses of Mo Indicate Nitrogenase Activity and Help Solve a N and C Fixation Puzzle in a Marine Cyanobacterium (2006) (2)
- Nutrient and moisture limitation reveal keystone metabolites that link switchgrass rhizosphere metabolome and microbiome dynamics (2022) (2)
- HT-SIP: a semi-automated stable isotope probing pipeline identifies cross-kingdom interactions in the hyphosphere of arbuscular mycorrhizal fungi (2022) (2)
- Site-directed mutagenesis of dimethylsulfoxide reductase from Rhodobacter capsulatus: The critical roles of tyrosine-114 and tryptophan-116 (2003) (2)
- Hydraulic redistribution by deeply rooted grasses and its ecohydrologic implications in the southern Great Plains of North America (2021) (2)
- Viral but not bacterial community succession is characterized by extreme turnover shortly after rewetting dry soils (2023) (2)
- Life history strategies and niches of soil bacteria emerge from interacting thermodynamic, biophysical, and metabolic traits (2022) (2)
- Extended organ culture of tumor cell lines with chick embryonic tissues (1986) (2)
- Joining NanoSIMS and STXM/NEXAFS to visualize soil biotic and abiotic processes at the nano-scale (2012) (1)
- Initial soil organic carbon stocks govern changes in soil carbon: Reality or artifact? (2022) (1)
- Microbial community assembly differs by mineral type in the rhizosphere (2017) (1)
- Mapping of Serologic and CTL-Defined Epitopes on HLA-A2 by Site-Directed Mutagenesis (1989) (1)
- Transcription of protease and chitinase genes provides a window onto macromolecular organic nitrogen decomposition in soil (2020) (1)
- Correction for Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry (2009) (1)
- Divergent microbial traits influence the transformation of living versus dead root inputs to soil carbon (2022) (1)
- Measuring Cyanobacterial Metabolism in Biofilms with NanoSIMS Isotope Imaging and Scanning Electron Microscopy (SEM). (2017) (1)
- Ecology of active viruses and their bacterial hosts in frozen Arctic peat soil revealed with H218O stable isotope probing metagenomics (2021) (1)
- Stable Isotope Probing of RNA Combining Phylogenetic Microarrays and High Resolution Secondary Ion Mass Spectrometry to Link Composition and Function in Microbial Systems (2010) (1)
- Edaphic controls on genome size and GC content of bacteria in soil microbial communities (2021) (1)
- New Methods for Imaging, Isotopic Labeling, and Analyzing Termite Gut Microbes with SEM and NanoSIMS (2010) (1)
- Metatranscriptomic analysis of marine Thaumarchaea suggests intra-phylum variability in in situ heterotrophic carbon and nitrogen metabolim (2016) (1)
- Response to ‘Stochastic and deterministic interpretation of pool models’ (2021) (1)
- The effects of alcohol on the brain. (1966) (1)
- Fast redox switch leads to rapid transformation of goethite in humid tropical soils: A mossbauer spectroscopy study (2022) (1)
- Systems Biology Strategies and Technologies for Understanding Microbes and Microbial Communities Genomic and Proteomic Strategies GTL Profiling Microbial Identity and Activity : Novel Applications of NanoSIMS and High Density Microarrays (2009) (1)
- Changes in Low-Frequency Vibrational Modes Induced by Point-Mutations in the Protein-Cofactor Matrix of Bacterial Reaction Centers (1998) (1)
- Digging a Little Deeper: Microbial Communities, Molecular Composition and Soil Organic Matter Turnover along Tropical Forest Soil Depth Profiles (2016) (1)
- Conversion of marginal land into switchgrass conditionally accrues soil carbon but reduces methane consumption (2021) (1)
- Correction to: Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations (2021) (1)
- Community RNA-Seq: Multi-kingdom responses to living versus decaying root inputs in soil (2021) (1)
- Diversifying and perennializing plants in agroecosystems alters retention of new C and N from crop residues. (2022) (1)
- Life in an uncertain world: how a characteristically dynamic environment forges a resilient microbiome and differential fates of soil carbon (2021) (0)
- WHO'S ON FIRST? CARBON ASSOCIATION AND BACTERIAL AND FUNGAL COLONIZATION OF FRESH SOIL MINERALS IN THE RHIZOSPHERE (2016) (0)
- Unravelling Rhizosphere-Microbial Interactions in the Rhizosphere of Alamo Switchgrass (Panicum virgatum) under Abiotic Stresses (2018) (0)
- Transcription of macromolecular N degrading genes provides a window into organic nitrogen decomposition in soil (2020) (0)
- Soil depth gradients in microbial growth kinetics under deeply- vs. shallow-rooted plants (2021) (0)
- Plant-Microbial Interactions Define Potential Mechanisms of Organic Matter Priming in the Rhizosphere (2015) (0)
- Getting to the Root of the Problem: Disentangling Interactions between Modern Root Inputs, Microbial Activity, and Carbon Destabilization in Buried Paleosols (2023) (0)
- Chemical imaging of biological materials by NanoSIMS using isotopic and elemental labels (2006) (0)
- Ecological genomics of the newly discovered diazotrophic filamentous cyanobacterium ESFC-1 (2014) (0)
- Ecohydrologic Implications of Deeply Rooted Grasses (2020) (0)
- Mary K. Firestone: Groundbreaking Journey of a Microbial Matriarch (2018) (0)
- The DMSO reductase family of molybdenum enzymes in purple phototrophic bacteria (2000) (0)
- Gene Expression in the Brains of Human Chronic Alcoholics in Relation to Genotype (2007) (0)
- A standardized quantitative analysis strategy for stable isotope probing metagenomics (2022) (0)
- Modification of the binding pocket for the QA ubiquinone in the reaction centre from Rhodobacter sphaeroides. (1998) (0)
- Structural studies of the purple bacterial photosynthetic reaction centre (2000) (0)
- Examining an underappreciated control on lignin decomposition in soils? Effects of reactive manganese species on intact plant cell walls (2011) (0)
- N-Methyl-D-Aspartate receptor expression in the cortex of human chronic alcoholics : The influence of the Taqia Polymorphism of Ankk1 (2009) (0)
- How drought modulates carbon-use efficiency and soil carbon formation in rhizosphere, detritusphere, and bulk soils (2020) (0)
- Molybdenum-Containing Enzymes: Dimethyl Sulfoxide Reductase as a model (1999) (0)
- NanoSIP: NanoSIMS Applications for Microbial Biology. (2021) (0)
- National Getting to Neutral Report - Preliminary Evaluation (2022) (0)
- Predictive genomic traits for bacterial growth in culture versus actual growth in soil (2019) (0)
- Metabolic traits and the niche of bulk soil bacteria in a Mediterranean grassland (2022) (0)
- Thermophilic Dehalococcoidia with unusual traits shed light on an unexpected past. (2023) (0)
- Testing the relationship between carbon-use efficiency and soil carbon formation in rhizosphere and detritusphere microbial communities (2021) (0)
- Mapping Soil Carbon from Cradle to Grave: C Transformations of Root Exudates and Plant Litter (2013) (0)
- Expression of macromolecular organic nitrogen degrading enzymes identifies potential mediators of soil organic N availability to an annual grass (2022) (0)
- Characterizing the Influence of Plant Growth on Carbon Association with Fresh Soil Minerals (2016) (0)
- Role of Reactive Mn Complexes in a Litter Decomposition Model System (2012) (0)
- The Chemistry of Environmental Interfaces: A Joined X-ray Spectromicroscopy and NanoSIMS Approach (2010) (0)
- Do foliar endophytic bacteria fix nitrogen (2015) (0)
- Are we meeting student expectations of a cure (2019) (0)
- Vulnerability of Paleosol Carbon Decomposition to Root-Derived Carbon Inputs (2020) (0)
- Arbuscular Mycorrhizal Fungi Transport a Significant Amount of Water to Host Plants (2019) (0)
- PHOTOSYNTHETIC REACTION CENTER MUTANT WITH PHE M 197 REPLACED WITH ARG AND TYR M 177 REPLACED WITH PHE (CHAIN M, Y177F, F197R) (1998) (0)
- Studying Microbial Stress Responses in Soil Ecosystems (2017) (0)
- Effect of genotype on glutamate-NMDA receptor subunit expression in caucasian alcohol misusers (2008) (0)
- Into the Deep: Variability in Soil Microbial Communities and Carbon Turnover Along a Tropical Forest Soil Depth Profile (2015) (0)
- Identifying parasitic and saprotrophic interactions of freshwater chytrids with a microalga (2016) (0)
- Characterisation of Dimethylsulfoxide reductase and DorC from Rhodobacter capsulatus: implications for electron transfer (1999) (0)
- Active virus-host interactions at sub-freezing temperatures in Arctic peat soil (2021) (0)
- Adaptive optics multiphoton microscope for imaging microbial processes in highly scattering soil and roots (2020) (0)
- Spectroscopic characterisation of two complimentary molybdoenzymes (2000) (0)
- PHOTOSYNTHETIC REACTION CENTER MUTANT WITH TRP M115 REPLACED WITH PHE (CHAIN M, WM115F) PHE M197 REPLACED WITH ARG (CHAIN M, FM197R) (2000) (0)
- PHOTOSYNTHETIC REACTION CENTER MUTANT WITH PHE M197 REPLACED WITH ARG (CHAIN M, FM197R) AND GLY M203 REPLACED WITH ASP (CHAIN M, GM203D) (2000) (0)
- Introducing explicit assessment of research skills in a masters program (2017) (0)
- Protein engineering of the photoreaction centre from Rhodobacter sphaeroides. (1998) (0)
- The Extracellular Matrix in Photosynthetic Mats: A Cyanobacterial Gingerbread House (2014) (0)
- Phenotype/genotype studies in alcohol misuse (2008) (0)
- Dynamic carbon association with minerals in the rhizosphere and detritosphere (2019) (0)
- Niche differentiation is spatially and temporally regulated in the rhizosphere (2020) (0)
- Connecting Taxon-Specific Microbial Activities to Carbon Cycling in the Rhizosphere (2016) (0)
- Using \delta 15 N and \delta 18 O in Nitrate to Determine the Source of Streamwater Nitrate in two N.H. Watersheds (2001) (0)
- PNAS Plus Significance Statements (2015) (0)
- Single-cell measurement of archaeal and bacterial carbon assimilation in dark Pacific Ocean waters (2016) (0)
- Exploring Potential Interactions of Bacteria and Arbuscular Mycorrhizal Fungi Using Network Analyses of an Annual Grassland Soils (2019) (0)
- System-level analysis of metabolic trade-offs during anaerobic photoheterotrophic growth in Rhodopseudomonas palustris (2019) (0)
- Abiotic reduction-complexation reactions of iron with natural organic matter at circumneutral pH (2019) (0)
- Molecular dynamics and spectroscopic insights into iron(III) stabilization of water-soluble polysaccharides (2021) (0)
- Corrigendum to “Microbial extracellular polysaccharide production and aggregate stability controlled by Switchgrass (Panicum virgatum) root biomass and soil water potential” [Soil Biology and Biochemistry 143 (2020) 107741] (2020) (0)
- Visualizing Microbial Biogeochemistry: NanoSIMS and Stable Isotope Probing (Invited) (2009) (0)
- Impacts of elevated CO 2 on plant-microbial interactions (2014) (0)
- Rhizosphere and detritusphere habitats modulate expression of soil N-cycling genes during plant development (2023) (0)
- A Multi-omics Approach to Understand the Microbial Transformation of Lignocellulosic Materials in the Digestive System of the Wood-Feeding Beetle Odontotaenius disjunctus (2015) (0)
- Lawrence Berkeley National Laboratory Recent Work Title Carbon sink strength of subsurface horizons in Brazilian oxisols Permalink (2018) (0)
- BSSD Q1 2021 Performance Metric report: LLNL Soil Microbiome SFA (2021) (0)
- Climate, soil mineralogy, and mycorrhizal fungi influence soil organic matter fractions in eastern US temperate forests (2023) (0)
- The Pattern of Temporal Redox Shifts Can Determine If Anaerobic FeII or CH4 Production Dominates (2021) (0)
- Redefining the microbial niche based on taxon-specific response to differing substrate concentration (2012) (0)
- Response to “Connectivity and pore accessibility in models of soil carbon cycling” (2021) (0)
- A trait based dynamic energy budget approach to explore emergent microalgal community structure (2015) (0)
- Permanent draft genome of strain ESFC-1: ecological genomics of a newly discovered lineage of filamentous diazotrophic cyanobacteria (2016) (0)
- Constraining the composition and quantity of organic matter used by abundant marine Thaumarchaeota. (2022) (0)
- Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate (2017) (0)
- Publisher Correction: A genomic catalog of Earth’s microbiomes (2020) (0)
- Studying Microbial Mat Functioning Amidst “Unexpected Diversity”: Methodological Approaches and Initial Results from Metatranscriptomes of Mats Over Diel cycles, iTags from Long Term Manipulations, and Biogeochemical Cycling in Simplified Microbial Mats Constructed from Cultures (2014) (0)
- Nanosims Isotopic Imaging of C and N Assimilation in Complex Microbial Communities (2015) (0)
- Impact of Aquifer Heterogeneities on Autotrophic Denitrification. (2015) (0)
- Assessing soil organic matter features under drought and normal conditions using direct infusion high resolution mass spectrometry and LC-MS/MS feature based molecular networking (2021) (0)
- Supplementary material to "Differential effects of redox conditions on the decomposition of litter and soil organic matter" (2020) (0)
- Gut anatomical properties and microbial functional assembly promote lignocellulose deconstruction and colony subsistence of a wood-feeding beetle (2019) (0)
- How Redox Fluctuation Shapes Microbial Community Structure and Mineral-Organic Matter Relationships in a Humid Tropical Forest Soil (2016) (0)
- Belowground allocation and dynamics of recently fixed plant carbon and soil organic matter in a California annual grassland (2022) (0)
- Visualizing the Stability of Char: Molecular- to Micron-scale Observations of Char Incubated in a Tropical Soil (2014) (0)
- Label-Free Multiphoton Imaging of Microbes in Root, Mineral, and Soil Matrices with Time-Gated Coherent Raman and Fluorescence Lifetime Imaging (2022) (0)
- Correction to: Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations (2021) (0)
- Microbes Persist: Using a Systems Biology Approach to Reveal How the Soil Microbiome Shapes Soil Organic Matter (2017) (0)
- Anoxic Carbon and Nitrogen Metabolism in Photosynthetic Microbial Mats as Revealed by Metatranscriptomic and NanoSIMS Studies (2012) (0)
- Nitrogen Breakdown and Assimilation Pathways in Rhizosphere and Detritusphere Soil from Time-Resolved Microbial Metatranscriptomes (2019) (0)
- Effects of Light Stress on Extracellular Cycling in a Cyanobacterial Biofilm Community (2015) (0)
- Soil phosphorus redistribution among iron-bearing minerals under redox fluctuation (2016) (0)
- Tracking the Path of Carbon from Plants to Rhizobiomes using Protein Stable Isotope Probing (2016) (0)
- Characterization of H2 Producing Microbial Communities of the Wood-Feeding Beetle Odontotaenius disjunctus by Multi-Scale Measurement of Metabolic Function (2012) (0)
- Soil Viral Community Composition Differs Spatially and in Response to Wet-up in Mediterranean Grasslands (2021) (0)
- New Applications of Proteomics Informs Microbial Functions in Soils (2019) (0)
- Competing for phosphors under changing redox conditions: biological versus geochemical sinks (2016) (0)
- Evolutionary history constrains microbial traits across environmental variation (2019) (0)
- Multiple element isotope probes, NanoSIMS, and the functional genomics of microbial carbon cycling in soils in response to chronic climatic change (2018) (0)
- Interactions Among Grassland Plant Species, Microbial Communities, and Soil Processes (2002) (0)
- Accelerating the development of a sustainable bioenergy portfolio through stable isotopes (2023) (0)
- Sources of Respired Carbon in a Northern Minnesota Ombrotrophic Spruce Bog: Preliminary 14C Results from the SPRUCE Site. (2014) (0)
- Who's on First? Part II: Bacterial and fungal colonization of fresh soil minerals (2015) (0)
- The Impact of Redox Fluctuations on Soil Organic Matter Decomposition in Tropical Forest Soils (2020) (0)
- Author Correction: A genomic catalog of Earth’s microbiomes (2021) (0)
- EcoFABs: advancing microbiome science through standardized fabricated ecosystems (2019) (0)
- Correction to: Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations (2022) (0)
- Modeling Respiration of Individual Bacterial Populations in situ with Quantitative Stable Isotope Probing (qSIP) (2019) (0)
- NanoSIMS and stable isotope probing (nanoSIP) to characterize viral carbon cycling in soil (2019) (0)
- 4th wedge viral wet-up manuscript NComms v1 (2023) (0)
- Plants-Microbes-Minerals: Interactions That Drive Soil Organic Matter Cycling I (2019) (0)
- An Overview of the Switchgrass Associated Microbes Belowground with Mutualistic Fungi and Soil Mesofauna as Potential Models for Sustainable Cultivation (2016) (0)
- Title : Active viral population dynamics in frozen Arctic peat soil revealed with H 218 O stable isotope probing metagenomics Running title : SIP-metagenomics of arctic peat virus populations (2021) (0)
- Into the Deep: Interactions Between Plant Roots, Microbial Ecophysiology, and Soil Minerals shape the fate and persistence of deep soil carbon (2018) (0)
- Micro-Scale Patterns of Organic Matter Decomposition and Storage Within a Buried Paleosol (2019) (0)
- Performance Metric Q4: Report on the use of imaging and mass spectrometry-based capabilities to describe microbiome interactions (2021) (0)
- High resolution trace element and isotopic imaging of microbial systems by NanoSIMS (2005) (0)
- Correction to: Minnesota peat viromes reveal terrestrial and aquatic niche partitioning for local and global viral populations (2022) (0)
- Radiocarbon Isotopic Classification of Deep Tropical Forest Soils (2015) (0)
- Roots Stimulate Expression of Decomposition Transcripts in the Soil Microbiome (2016) (0)
- Directing Traffic in the Rhizosphere: How Phage and Fauna Shape the Flow and Fate of Root Carbon through Microbial Pathways (2020) (0)
- Connecting switchgrass-microbe-soil interfaces for sustainable bioenergy crop production on marginal soils: stable-isotope labeling, genomics and exometabolomics (2020) (0)
- Stable isotope approaches for tracking C cycling and function in microbial communities (2008) (0)
- Linking Nano-Scale Patterns of 15N and 13C Metabolism to Bacterial Morphology with Secondary Ion Mass Spectrometry (2005) (0)
- 1 Tracking microbial interactions with NanoSIMS 1 2 (2017) (0)
- Astrovirology: how viruses enhance our understanding of life in the Universe (2023) (0)
- Nutrients strengthen density dependence of per-capita growth and mortality rates in the soil bacterial community (2023) (0)
- Tropical forest response to a drier future: Measurement and modeling of soil organic matter stocks and turnover (2017) (0)
- Mapping Soil Carbon from Cradle to Grave: ‘Omic and Isotope Based Measurements of Root C Transformations (2014) (0)
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