Joakim Lundeberg
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(Suggest an Edit or Addition)Joakim Lundeberg's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- SARS-CoV-2 Receptor ACE2 Is an Interferon-Stimulated Gene in Human Airway Epithelial Cells and Is Detected in Specific Cell Subsets across Tissues (2020) (1833)
- SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes (2020) (1723)
- Visualization and analysis of gene expression in tissue sections by spatial transcriptomics (2016) (1416)
- The Human Cell Atlas (2017) (1285)
- A Human Protein Atlas for Normal and Cancer Tissues Based on Antibody Proteomics* (2005) (1280)
- The Norway spruce genome sequence and conifer genome evolution (2013) (1261)
- Multiple and ancient origins of the domestic dog. (1997) (980)
- Genetic Evidence for an East Asian Origin of Domestic Dogs (2002) (903)
- A transcriptional roadmap to wood formation (2001) (517)
- A high frequency of sequence alterations is due to formalin fixation of archival specimens. (1999) (513)
- High-definition spatial transcriptomics for in situ tissue profiling (2019) (496)
- The biotin‐streptavidin interaction can be reversibly broken using water at elevated temperatures (2005) (459)
- Gene discovery in the wood-forming tissues of poplar: analysis of 5, 692 expressed sequence tags. (1998) (449)
- p53 suppresses the self-renewal of adult neural stem cells (2005) (433)
- A hypoxic niche regulates glioblastoma stem cells through hypoxia inducible factor 2 alpha. (2010) (419)
- mtDNA Data Indicate a Single Origin for Dogs South of Yangtze River, Less Than 16,300 Years Ago, from Numerous Wolves (2009) (367)
- Generations of sequencing technologies. (2009) (351)
- Defining the transcriptome and proteome in three functionally different human cell lines (2010) (348)
- Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications. (2004) (347)
- A Populus EST resource for plant functional genomics. (2004) (341)
- A Spatiotemporal Organ-Wide Gene Expression and Cell Atlas of the Developing Human Heart (2019) (334)
- NRAS and BRAF mutations in melanoma tumours in relation to clinical characteristics: a study based on mutation screening by pyrosequencing (2006) (324)
- Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer’s Disease (2020) (320)
- Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma (2020) (315)
- Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity (2018) (296)
- A detailed picture of the origin of the Australian dingo, obtained from the study of mitochondrial DNA. (2004) (284)
- A transcriptional timetable of autumn senescence (2004) (275)
- Cambial meristem dormancy in trees involves extensive remodelling of the transcriptome. (2004) (236)
- Spatiotemporal dynamics of molecular pathology in amyotrophic lateral sclerosis (2018) (232)
- A single-cell and spatially resolved atlas of human breast cancers (2021) (220)
- Spatially Resolved Transcriptomes—Next Generation Tools for Tissue Exploration (2020) (220)
- Gene Expression in Autumn Leaves1 (2003) (206)
- Longitudinal Multi-omics Analyses Identify Responses of Megakaryocytes, Erythroid Cells, and Plasmablasts as Hallmarks of Severe COVID-19 (2020) (205)
- Multiple antibody reactivities to citrullinated antigens in sera from patients with rheumatoid arthritis: association with HLA-DRB1 alleles (2008) (200)
- The genome sequence of Mycoplasma mycoides subsp. mycoides SC type strain PG1T, the causative agent of contagious bovine pleuropneumonia (CBPP). (2004) (190)
- Reducing Pericyte-Derived Scarring Promotes Recovery after Spinal Cord Injury (2018) (188)
- Human epidermal cancer and accompanying precursors have identical p53 mutations different from p53 mutations in adjacent areas of clonally expanded non-neoplastic keratinocytes. (1996) (171)
- Spatially Resolved Transcriptomics Enables Dissection of Genetic Heterogeneity in Stage III Cutaneous Malignant Melanoma. (2018) (162)
- Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography (2020) (160)
- Integrating spatial gene expression and breast tumour morphology via deep learning (2020) (144)
- Mutations in SLC12A5 in epilepsy of infancy with migrating focal seizures (2015) (142)
- Large Scale Library Generation for High Throughput Sequencing (2011) (140)
- Expression profiling of adrenocortical neoplasms suggests a molecular signature of malignancy. (2005) (138)
- BESST - Efficient scaffolding of large fragmented assemblies (2014) (137)
- SweGen: a whole-genome data resource of genetic variability in a cross-section of the Swedish population (2017) (136)
- Dynamics of HIV-1 Quasispecies during Antiviral Treatment Dissected Using Ultra-Deep Pyrosequencing (2010) (136)
- PATCHED and p53 gene alterations in sporadic and hereditary basal cell cancer (2001) (135)
- Affinity Proteomics for Systematic Protein Profiling of Chromosome 21 Gene Products in Human Tissues* (2003) (133)
- Molecular pathology in basal cell cancer with p53 as a genetic marker (1997) (119)
- Increased Throughput by Parallelization of Library Preparation for Massive Sequencing (2010) (119)
- Molecular atlas of the adult mouse brain (2019) (119)
- Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution (2015) (118)
- A radical switch in clonality reveals a stem cell niche in the epiphyseal growth plate (2019) (115)
- The age and genomic integrity of neurons after cortical stroke in humans (2014) (115)
- Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections (2018) (109)
- Transcriptional responses of Paxillus involutus and Betula pendula during formation of ectomycorrhizal root tissue. (2004) (109)
- Transmission of Stress-Induced Learning Impairment and Associated Brain Gene Expression from Parents to Offspring in Chickens (2007) (107)
- Persistent p53 mutations in single cells from normal human skin. (2001) (101)
- Spatially resolved transcriptome profiling in model plant species (2017) (100)
- Genome-wide profiling of Populus small RNAs (2009) (99)
- Adenosine kinase deficiency disrupts the methionine cycle and causes hypermethioninemia, encephalopathy, and abnormal liver function. (2011) (99)
- Spatially resolved transcriptomics adds a new dimension to genomics (2021) (99)
- Genomic Insights into the Atopic Eczema-Associated Skin Commensal Yeast Malassezia sympodialis (2013) (97)
- The Gene Expression Profile in the Synovium as a Predictor of the Clinical Response to Infliximab Treatment in Rheumatoid Arthritis (2010) (93)
- Benign clonal keratinocyte patches with p53 mutations show no genetic link to synchronous squamous cell precancer or cancer in human skin. (1997) (91)
- Seamless integration of image and molecular analysis for spatial transcriptomics workflows (2020) (91)
- Human immunodeficiency virus type 1 is present in the cerebrospinal fluid of a majority of infected individuals (1992) (88)
- Serum Microarrays for Large Scale Screening of Protein Levels *S (2005) (87)
- Sequencing Degraded RNA Addressed by 3' Tag Counting (2014) (86)
- Activated paper surfaces for the rapid hybridization of DNA through capillary transport. (2012) (85)
- Extensive linkage disequilibrium in small human populations in Eurasia. (2002) (85)
- Genome wide gene amplifications and deletions in Plasmodium falciparum. (2007) (83)
- Effect of infliximab on mRNA expression profiles in synovial tissue of rheumatoid arthritis patients (2006) (83)
- cDNA microarray analysis of small plant tissue samples using a cDNA tag target amplification protocol. (2001) (82)
- Microarray analysis of the in vivo effects of hypophysectomy and growth hormone treatment on gene expression in the rat. (2001) (81)
- Inheritance of Acquired Behaviour Adaptations and Brain Gene Expression in Chickens (2009) (76)
- The plasticity of the mammalian transcriptome. (2010) (76)
- Spatial deconvolution of HER2-positive breast cancer delineates tumor-associated cell type interactions (2021) (70)
- Transcriptional profiling enables molecular classification of adrenocortical tumours. (2009) (70)
- Molecular cloning and characterization of a cDNA encoding poplar UDP-glucose dehydrogenase, a key gene of hemicellulose/pectin formation. (2002) (69)
- Hypoxia induces p53-dependent transactivation and Fas/CD95-dependent apoptosis (2007) (68)
- Common variants in human CRC genes as low-risk alleles. (2010) (67)
- ST Pipeline: an automated pipeline for spatial mapping of unique transcripts (2017) (67)
- High-Density Microwell Chip for Culture and Analysis of Stem Cells (2009) (64)
- Persistence of azidothymidine-resistant human immunodeficiency virus type 1 RNA genotypes in posttreatment sera (1992) (62)
- Forensic evidence based on mtDNA from dog and wolf hairs. (1999) (61)
- SNP typing by apyrase-mediated allele-specific primer extension on DNA microarrays. (2002) (60)
- Integrated molecular portrait of non-small cell lung cancers (2013) (60)
- Genetic tumor archeology: microdissection and genetic heterogeneity in squamous and basal cell carcinoma. (2005) (60)
- Hereditary uveal melanoma: A report of a germline mutation in BAP1 (2013) (58)
- Sun-induced nonsynonymous p53 mutations are extensively accumulated and tolerated in normal appearing human skin. (2011) (57)
- Signal pathways JNK and NF-κB, identified by global gene expression profiling, are involved in regulation of TNFα-induced mPGES-1 and COX-2 expression in gingival fibroblasts (2010) (57)
- A roadmap for the Human Developmental Cell Atlas (2021) (57)
- Variability in synovial inflammation in rheumatoid arthritis investigated by microarray technology (2006) (57)
- Stepping stones in DNA sequencing (2012) (57)
- Classification of DNA sequences using Bloom filters (2010) (57)
- Monitoring Resistance to Human Immunodeficiency Virus Type 1 Protease Inhibitors by Pyrosequencing (2001) (57)
- Comparison of whole genome amplification techniques for human single cell exome sequencing (2017) (56)
- Spatial detection of fetal marker genes expressed at low level in adult human heart tissue (2017) (56)
- Genotyping by apyrase-mediated allele-specific extension. (2001) (55)
- A latent lineage potential in resident neural stem cells enables spinal cord repair (2020) (55)
- Assessment of sequence-based p53 gene analysis in human breast cancer: messenger RNA in comparison with genomic DNA targets. (1998) (55)
- Laser-assisted cell microdissection using the PALM system. (2005) (55)
- The human skeletal muscle transcriptome: sex differences, alternative splicing, and tissue homogeneity assessed with RNA sequencing (2014) (53)
- Differentiation of normal and cancer cells induced by sulfhydryl reduction: biochemical and molecular mechanisms (2005) (52)
- Visual detection of DNA on paper chips. (2014) (51)
- Genomic analysis of single cells from human basal cell cancer using laser-assisted capture microscopy. (1997) (51)
- Transcriptional profiling of melanocytes from patients with vitiligo vulgaris (2007) (50)
- p 53 suppresses the self-renewal of adult neural stem cells (2005) (50)
- Dog Y chromosomal DNA sequence: identification, sequencing and SNP discovery (2006) (50)
- An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries (2016) (49)
- Multimodal Analysis of Composition and Spatial Architecture in Human Squamous Cell Carcinoma (2020) (49)
- Genetic instability in the 9q22.3 region is a late event in the development of squamous cell carcinoma (1998) (49)
- Human immunodeficiency virus type 1 and cytomegalovirus in saliva (1993) (46)
- Transcriptome analysis reveals mucin 4 to be highly associated with periodontitis and identifies pleckstrin as a link to systemic diseases (2015) (45)
- Gene Expression Profiles in Paired Gingival Biopsies from Periodontitis-Affected and Healthy Tissues Revealed by Massively Parallel Sequencing (2012) (45)
- TagGD: Fast and Accurate Software for DNA Tag Generation and Demultiplexing (2013) (45)
- mtDNA tandem repeats in domestic dogs and wolves: mutation mechanism studied by analysis of the sequence of imperfect repeats. (2000) (43)
- Variation of hepatitis C virus hypervariable region 1 in immunocompromised patients. (1997) (43)
- Pyrosequencing as an alternative to single-strand conformation polymorphism analysis for detection of N-ras mutations in human melanoma metastases. (2002) (42)
- p53 Mutations in lung cancer associated with residential radon exposure. (1999) (42)
- Super-resolved spatial transcriptomics by deep data fusion (2020) (42)
- CYTOMEGALOVIRUS DNA IN PERIPHERAL BLOOD LEUKOCYTES AND PLASMA FROM BONE MARROW TRANSPLANT RECIPIENTS (1995) (42)
- MC1R variation and melanoma risk in the Swedish population in relation to clinical and pathological parameters (2009) (41)
- Dynamic changes in HIV‐1 quasispecies from azidothymidine (AZT)‐treated patients (1992) (41)
- Spatial Transcriptomics Reveals Genes Associated with Dysregulated Mitochondrial Functions and Stress Signaling in Alzheimer Disease (2020) (40)
- Microarray Analysis of the in Vivo Effects of Hypophysectomy and Growth Hormone Treatment on Gene Expression in the Rat. (2001) (40)
- Massive and parallel expression profiling using microarrayed single-cell sequencing (2016) (40)
- Comprehensive RNA sequencing of healthy human endometrium at two time points of the menstrual cycle (2016) (38)
- Gene expression profiling of periodontitis-affected gingival tissue by spatial transcriptomics (2018) (38)
- Tri-nucleotide threading for parallel amplification of minute amounts of genomic DNA (2006) (37)
- Variation in the hepatitis C virus NS5a region in relation to hypervariable region 1 heterogeneity during interferon treatment (1998) (37)
- Global gene expression analysis in time series following N-acetyl L-cysteine induced epithelial differentiation of human normal and cancer cells in vitro (2005) (37)
- The mutagenic effect of ultraviolet‐A1 on human skin demonstrated by sequencing the p53 gene in single keratinocytes (2002) (37)
- Mutation spectra of epidermal p53 clones adjacent to basal cell carcinoma and squamous cell carcinoma (2004) (37)
- Viral and microbial genotyping by a combination of multiplex competitive hybridization and specific extension followed by hybridization to generic tag arrays. (2003) (37)
- Polymorphism in the Pertussis Toxin Promoter Region Affecting the DNA-Based Diagnosis of BordetellaInfection (2000) (37)
- Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines (2012) (37)
- PTCH codon 1315 polymorphism and risk for nonmelanoma skin cancer (2005) (36)
- Comparison of total and cytoplasmic mRNA reveals global regulation by nuclear retention and miRNAs (2012) (36)
- Proteogenomics produces comprehensive and highly accurate protein-coding gene annotation in a complete genome assembly of Malassezia sympodialis (2017) (35)
- Expression profiling of microdissected cell populations selected from basal cells in normal epidermis and basal cell carcinoma (2008) (35)
- Spatial Transcriptomics to define transcriptional patterns of zonation and structural components in the mouse liver (2020) (34)
- Cooperative Oligonucleotides Mediating Direct Capture of Hepatitis C Virus RNA from Serum (1998) (33)
- Multiplex PCB-based electrochemical detection of cancer biomarkers using MLPA-barcode approach. (2016) (32)
- Clones of normal keratinocytes and a variety of simultaneously present epidermal neoplastic lesions contain a multitude of p53 gene mutations in a xeroderma pigmentosum patient. (1998) (32)
- Toward the single-hour high-quality genome. (2012) (32)
- Spatially resolved clonal copy number alterations in benign and malignant tissue (2022) (32)
- Serum hepatitis C virus RNA levels in chronic hepatitis C--importance for outcome of interferon alfa-2b treatment. (1994) (32)
- Competitive enzymatic reaction to control allele-specific extensions (2005) (32)
- Extremely Different Behaviours in High and Low Body Weight Lines of Chicken are Associated with Differential Expression of Genes Involved in Neuronal Plasticity (2009) (31)
- Gene array identification of Ipf1/Pdx1-/- regulated genes in pancreatic progenitor cells (2007) (31)
- Transcriptional output, cell-type densities, and normalization in spatial transcriptomics (2018) (30)
- Analysis of stranded information using an automated procedure for strand specific RNA sequencing (2014) (29)
- Comparative analysis of the complete cag pathogenicity island sequence in four Helicobacter pylori isolates. (2004) (29)
- Arrayed identification of DNA signatures (2007) (29)
- Genome-wide spatial expression profiling in formalin-fixed tissues (2021) (29)
- HPV-related cancer susceptibility and p53 codon 72 polymorphism. (2001) (29)
- Gene expression analysis by signature pyrosequencing. (2002) (28)
- Using Whole-Exome Sequencing to Identify Genetic Markers for Carboplatin and Gemcitabine-Induced Toxicities (2015) (27)
- Transcriptomics of cardiac biopsies reveals differences in patients with or without diagnostic parameters for heart failure with preserved ejection fraction (2019) (27)
- Dynamic analysis of heterogeneous hepatitis C virus populations by direct solid-phase sequencing (1995) (26)
- Serendipitous Meta-Transcriptomics: The Fungal Community of Norway Spruce (Picea abies) (2015) (26)
- ST viewer: a tool for analysis and visualization of spatial transcriptomics datasets (2018) (25)
- ESTs from brain and testis of White Leghorn and red junglefowl: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels (2005) (25)
- Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics (2021) (25)
- A validated liquid chromatography tandem mass spectrometry method for quantification of erlotinib, OSI-420 and didesmethyl erlotinib and semi-quantification of erlotinib metabolites in human plasma. (2015) (25)
- SARS-CoV-2 entry factors are highly expressed in nasal epithelial cells together with innate immune genes (2020) (24)
- High-density spatial transcriptomics arrays for in situ tissue profiling (2019) (24)
- Global gene expression analyses of hematopoietic stem cell-like cell lines with inducible Lhx2 expression (2006) (24)
- Solid-phase method for differential display of genes expressed in hematopoietic stem cells. (1996) (23)
- Quality Matters: 2016 Annual Conference of the National Infrastructures for Biobanking. (2017) (23)
- Multidimensional transcriptomics provides detailed information about immune cell distribution and identity in HER2+ breast tumors (2018) (23)
- Differential cloning of growth hormone-regulated hepatic transcripts in the aged rat. (2000) (23)
- Identification of early neurodegenerative pathways in progressive multiple sclerosis (2022) (23)
- Differential gene expression in femoral bone from red junglefowl and domestic chicken, differing for bone phenotypic traits (2007) (23)
- A brief history of genetic variation analysis. (2002) (22)
- Preparation of plant tissue to enable Spatial Transcriptomics profiling using barcoded microarrays (2018) (22)
- Escherichia coli single‐stranded DNA‐binding protein, a molecular tool for improved sequence quality in pyrosequencing (2002) (22)
- ST Spot Detector: a web-based application for automatic spot and tissue detection for spatial Transcriptomics image datasets (2018) (22)
- Scalable Transcriptome Preparation for Massive Parallel Sequencing (2011) (22)
- A novel method for forensic DNA investigations: repeat-type sequence analysis of tandemly repeated mtDNA in domestic dogs. (2000) (22)
- Chronic lung diseases are associated with gene expression programs favoring SARS-CoV-2 entry and severity (2021) (21)
- High expression of glycolytic and pigment proteins is associated with worse clinical outcome in stage III melanoma (2013) (21)
- A cDNA RDA protocol using solid-phase technology suited for analysis in small tissue samples. (2000) (21)
- In-Depth Transcriptome Analysis Reveals Novel TARs and Prevalent Antisense Transcription in Human Cell Lines (2010) (21)
- Cloning and characterization of ZNF189, a novel human Krüppel-like zinc finger gene localized to chromosome 9q22-q31. (1998) (21)
- Improved gap size estimation for scaffolding algorithms (2012) (20)
- Restriction of hepatitis C virus heterogeneity during prolonged interferon-alpha therapy in relation to changes in virus load. (1996) (20)
- Gene Expression Analysis of Human Epidermal Keratinocytes after N-Acetyl L-Cysteine Treatment Demonstrates Cell Cycle Arrest and Increased Differentiation (2005) (20)
- Nanopore arrays in a silicon membrane for parallel single-molecule detection: DNA translocation (2015) (19)
- Analysis of p53 mutations in single cells obtained from histological tissue sections. (2000) (19)
- Novel Candidate Genes for Atherosclerosis Are Identified by Representational Difference Analysis-Based Transcript Profiling of Cholesterol-Loaded Macrophages (2002) (19)
- Assembly of a gene sequence tag microarray by reversible biotin-streptavidin capture for transcript analysis of Arabidopsis thaliana (2005) (19)
- Levels of mdr1 and mrp mRNA in leukaemic cell populations from patients with acute myelocytic leukaemia are heterogenous and inversely correlated to cellular daunorubicin accumulation (1996) (19)
- Signaling pathways involved in the regulation of TNFα-induced toll-like receptor 2 expression in human gingival fibroblasts. (2012) (19)
- A Single-Stranded Oligonucleotide Inhibits Toll-Like Receptor 3 Activation and Reduces Influenza A (H1N1) Infection (2019) (18)
- Deconstructing tumor heterogeneity: the stromal perspective (2020) (18)
- Genome-wide Spatial Expression Profiling in FFPE Tissues (2020) (18)
- Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems (2018) (18)
- Identification of candidate SNPs for drug induced toxicity from differentially expressed genes in associated tissues. (2012) (18)
- Improving reliability and performance of DNA microarrays (2006) (18)
- Principles of tumor biology and pathogenesis of BCCs and SCCs.-Dermatology (2003) (17)
- Visual DNA -- identification of DNA sequence variations by bead trapping. (2007) (17)
- The spatial transcriptomic landscape of the healing mouse intestine following damage (2022) (17)
- Microarray-based AMASE as a novel approach for mutation detection. (2004) (17)
- Rationale and design of the PREFERS (Preserved and Reduced Ejection Fraction Epidemiological Regional Study) Stockholm heart failure study: an epidemiological regional study in Stockholm county of 2.1 million inhabitants (2016) (16)
- Genetic mosaicism in basal cell carcinoma (2005) (16)
- sepal: identifying transcript profiles with spatial patterns by diffusion-based modeling (2021) (16)
- Neurotransmitter phenotype-specific expression changes in developing sympathetic neurons (2007) (16)
- Quantification of HIV-1 using multiple competitors in a single-tube assay. (1996) (16)
- Differential cloning of growth hormone-regulated hepatic transcripts in the aged rat (1999) (16)
- The spatial landscape of gene expression isoforms in tissue sections (2020) (16)
- Nuclease-Assisted Suppression of Human DNA Background in Sepsis (2014) (15)
- Spatial Deconvolution of HER2-positive Breast Tumors Reveals Novel Intercellular Relationships (2020) (15)
- Transcriptome analysis in primary neural stem cells using a tag cDNA amplification method (2005) (15)
- SCREENING AND SCANNING OF SINGLE NUCLEOTIDE POLYMORPHISMS IN THE PIG MELANOCORTIN 1 RECEPTOR GENE (MC1R) BY PYROSEQUENCING (2001) (15)
- Analysis of 70,000 EST sequences to study divergence between two closely related Populus species (2005) (15)
- Automation of Spatial Transcriptomics library preparation to enable rapid and robust insights into spatial organization of tissues (2020) (15)
- Allelotyping by massively parallel pyrosequencing of SNP‐carrying trinucleotide threads (2008) (15)
- Genome-wide identification of Wig-1 mRNA targets by RIP-Seq analysis (2015) (14)
- Monitoring of representational difference analysis subtraction procedures by global microarrays. (2002) (14)
- Electrochemical Genetic Profiling of Single Cancer Cells. (2017) (14)
- Spatial and temporal transcriptomics reveal microglia-astroglia crosstalk in the amyloid-β plaque cell niche of Alzheimer’s disease (2019) (14)
- Single cell analysis of cancer cells using an improved RT-MLPA method has potential for cancer diagnosis and monitoring (2015) (14)
- The Chironomus tentans genome sequence and the organization of the Balbiani ring genes (2014) (14)
- Automation of cDNA Synthesis and Labelling Improves Reproducibility (2009) (13)
- Assessment of Whole Genome Amplification for Sequence Capture and Massively Parallel Sequencing (2014) (13)
- Splotch: Robust estimation of aligned spatial temporal gene expression data (2019) (13)
- Hierarchical molecular tagging to resolve long continuous sequences by massively parallel sequencing (2013) (13)
- Flow cytometry for enrichment and titration in massively parallel DNA sequencing (2009) (13)
- Spatial mapping of cell types by integration of transcriptomics data (2019) (13)
- Analysis of transcript and protein overlap in a human osteosarcoma cell line (2010) (13)
- Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools (2014) (12)
- Charting Tissue Expression Anatomy by Spatial Transcriptome Deconvolution (2018) (12)
- Correction: Inheritance of Acquired Behaviour Adaptations and Brain Gene Expression in Chickens (2009) (12)
- Fabrication and functionalization of PCB gold electrodes suitable for DNA-based electrochemical sensing. (2014) (12)
- SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation (2020) (11)
- Expressed sequence tags from the midgut and an epithelial cell line of Chironomus tentans: annotation, bioinformatic classification of unknown transcripts and analysis of expression levels (2005) (11)
- Catalog of gene expression in adult neural stem cells and their in vivo microenvironment. (2006) (11)
- Microarray‐based resequencing by apyrase‐mediated allele‐specific extension (2003) (11)
- Single-Stranded Nucleic Acids Regulate TLR3/4/7 Activation through Interference with Clathrin-Mediated Endocytosis (2018) (10)
- Detection of sequence polymorphisms in red junglefowl and White Leghorn ESTs. (2004) (10)
- Author response: The Human Cell Atlas (2017) (10)
- Vascular Gene Expression in Atherosclerotic Plaque-Prone Regions Analyzed by Representational Difference Analysis (2004) (10)
- Tag-array based HPV genotyping by competitive hybridization and extension. (2005) (10)
- Amplification of mRNA populations by a cDNA tag strategy. (2004) (10)
- Morphological Features Extracted by AI Associated with Spatial Transcriptomics in Prostate Cancer (2021) (9)
- Single cell gene mutation analysis using laser-assisted microdissection of tissue sections. (2002) (9)
- Monitoring of the subtraction process in solid-phase representational difference analysis: characterization of a candidate drug. (2001) (9)
- Rapid flow-sorting to simultaneously resolve multiplex massively parallel sequencing products (2011) (9)
- The role of p53 codon 72 and human papilloma virus status of cutaneous squamous cell carcinoma in the Swedish population. (2004) (9)
- Use of Multiple Competitors for Quantification of Human Immunodeficiency Virus Type 1 RNA in Plasma (1998) (8)
- Expression profiling of signature gene sets with trinucleotide threading. (2008) (8)
- Epidermal growth factor (EGF) withdrawal masks gene expression differences in the study of pituitary adenylate cyclase-activating polypeptide (PACAP) activation of primary neural stem cell proliferation (2005) (8)
- Clonally heritable gene expression imparts a layer of diversity within cell types (2022) (8)
- A Landmark-based Common Coordinate Framework for Spatial Transcriptomics Data (2021) (8)
- Comparison of PrASE and Pyrosequencing for SNP Genotyping (2006) (8)
- Context-dependent Taq-polymerase-mediated nucleotide alterations, as revealed by direct sequencing of the ZNF189 gene: implications for mutation detection. (1999) (8)
- Endonuclease Specificity and Sequence Dependence of Type IIS Restriction Enzymes (2015) (7)
- Quantification of Bordetella pertussis in clinical samples by colorimetric detection of competitive PCR products (1998) (7)
- Single-Stranded Oligonucleotide-Mediated Inhibition of Respiratory Syncytial Virus Infection (2020) (7)
- The spatial RNA integrity number assay for in situ evaluation of transcriptome quality (2021) (7)
- The spatial landscape of clonal somatic mutations in benign and malignant tissue (2021) (7)
- Genes and variants in hematopoiesis-related pathways are associated with gemcitabine/carboplatin-induced thrombocytopenia (2019) (7)
- Comparative analysis of a 3' end tag PCR and a linear RNA amplification approach for microarray analysis. (2007) (7)
- Solid-phase differential display and bacterial expression systems in selection and functional analysis of cDNAs. (1999) (7)
- Shotgun sequencing and microarray analysis of RDA transcripts. (2003) (6)
- Gene-specific FACS sorting method for target selection in high-throughput amplicon sequencing (2010) (6)
- Detection of MC1R polymorphisms with protease-mediated allele-specific extension as an alternative to direct sequencing. (2005) (6)
- Expression Analysis of Growth and Energy Regulation‐Associated Genes in Two Divergent Chicken Strains (2005) (6)
- Visual DNA as a diagnostic tool (2009) (5)
- Barcoded solid-phase RNA capture for Spatial Transcriptomics profiling in mammalian tissue sections (2018) (5)
- B cell expansion hinders the stroma-epithelium regenerative cross talk during mucosal healing. (2021) (5)
- The discovAIR project: a roadmap towards the Human Lung Cell Atlas (2022) (5)
- Toward pyrosequencing on surface-attached genetic material by use of DNA-binding luciferase fusion proteins. (2004) (5)
- Spatially resolved transcriptomics adds a new dimension to genomics (2021) (5)
- Whole-genome sequencing and gene network modules predict gemcitabine/carboplatin-induced myelosuppression in non-small cell lung cancer patients (2020) (4)
- Forensic Informativity of ~3000 bp of Coding Sequence of Domestic Dog mtDNA (2014) (4)
- Toward Rare Blood Cell Preservation for RNA Sequencing. (2015) (4)
- Genetic association of gemcitabine/carboplatin-induced leukopenia and neutropenia in non-small cell lung cancer patients using whole-exome sequencing. (2020) (4)
- Effect of infliximab on gene expression profiles in synovial tissue of RA patients. (2006) (4)
- Developmental origins of cell heterogeneity in the human lung (2022) (3)
- The C1orf9 gene encodes a putative transmembrane member of a novel protein family. (2000) (3)
- The impact of gastrointestinal dysmotility on the aerodigestive microbiome of pediatric lung transplant recipients. (2020) (3)
- P2.17 Proteomics and Gene Expression Profiling of Melanoma Chemotherapy Response in Tumors (2012) (3)
- Translational Database Selection and Multiplexed Sequence Capture for Up Front Filtering of Reliable Breast Cancer Biomarker Candidates (2011) (3)
- Mutational Spectra of p53 Clones adjacent to Basal Cell Carcinoma and Squamous Cell Carcinoma (2004) (2)
- Human Developmental Cell Atlas: milestones achieved and the roadmap ahead (2020) (2)
- Validation of whole genome amplification for analysis of the p53 tumor suppressor gene in limited amounts of tumor samples. (2012) (2)
- Human breast cancer in situ capturing transcriptomics (2020) (2)
- A gene expression profile associated with clinical outcome in stage III melanoma. (2011) (2)
- Design and assessment of binary DNA for nanopore sequencing (2010) (2)
- Spatially resolved transcriptomic profiling of degraded and challenging fresh frozen samples (2022) (2)
- Multiple Competitors for Single-Tube Quantification of HIV-1 DNA (1997) (2)
- expression in human skeletal muscle Effects of exercise on GLUT-4 and glycogenin gene (2015) (2)
- Comprehensive cell atlas of the first-trimester developing human brain (2022) (2)
- SnapShot: Spatial transcriptomics (2022) (2)
- Corrigendum: An automated approach to prepare tissue-derived spatially barcoded RNA-sequencing libraries (2017) (1)
- Comprehensive analysis of the genome transcriptome and proteome landscapes of three tumor cell lines (2012) (1)
- The Chironomus tentans genome sequence and the organization of the Balbiani ring genes (2014) (1)
- Spatio-temporal analysis of prostate tumors in situ suggests pre-existence of treatment-resistant clones (2022) (1)
- Serum microarrays for screening of protein levels (2005) (1)
- Discovery of breast cancer biomarker candidates by translational database selection and multiplex enrichment strategies (2010) (1)
- A topographic atlas defines developmental origins of cell heterogeneity in the human embryonic lung (2023) (1)
- Direct DNA Sequencing of Polymerase Chain Reaction Products Using Magnetic Beads (2000) (1)
- Mapping the Connectome Using Novel AAV Vectors, DNA Barcoding and Spatial Transcriptomics (2018) (1)
- Analysis of stranded information using an automated procedure for strand specific RNA sequencing (2014) (1)
- Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics (2021) (1)
- Mutations in Lung Cancer Associated with Residential Radon Exposure 1 (1999) (1)
- Spatial transcriptomics of T and B cell receptors uncovers lymphocyte clonal dynamics in human tissue (2022) (1)
- Locus Heterogeneity in Epilepsy of Infancy with Migrating Focal Seizures (2016) (1)
- Integrated molecular portrait of non-small cell lung cancers (2013) (1)
- Expansion Spatial Transcriptomics (2022) (1)
- Efficient de novo assembly of large and complex genomes by massively parallel sequencing of Fosmid pools (2014) (1)
- Functional genomics of Populus leaves (2001) (1)
- Advances in DNA Detection (2014) (1)
- The spatial transcriptomic landscape of the healing intestine following damage (2021) (1)
- SNP ANALYSIS BY ALLELE-SPECIFIC PYROSEQUENCING EXTENSION IN A MICROMACHINED FILTER-CHAMBER DEVICE (2001) (1)
- Gene expression in femoral bone from two divergent chicken populations, differing markedly in bone phenotypes (2004) (1)
- Three-dimensional spatial transcriptomics analysis for classification of breast cancer (2017) (1)
- An Organ-Wide Gene Expression Atlas of the Developing Human Heart (2018) (1)
- Sun‐induced Missense Mutations Are Extensively Accumulated and Tolerated in Phenotypically Intact Stem Cell Compartments of Human Skin (2010) (1)
- Abstract 609: Contribution of the tumor and stroma compartments for TNBC molecular classification using spatial transcriptomics analysis (2021) (0)
- High-definition spatial transcriptomics for in situ tissue profiling (2019) (0)
- Gene expression analysis in tissue sections (2012) (0)
- Expression profiles in aspen leaves during senescence of genes that were highly expressed in mature (2011) (0)
- muscle size in humans Effects of 3 days unloading on molecular regulators of (2015) (0)
- 093 Dissecting intercellular communication in adult human skin with single-cell and spatial transcriptomics (2021) (0)
- A strategy for identifying nuclear modifier genes by massively parallel whole-genome sequencing (2011) (0)
- Direct sequencing of the ZNF 189 gene promotor reveals artifact hot spot mutations. (2010) (0)
- Novel loss-of-function variant in DENND5A impedes melanosomal cargo transport and predisposes to familial cutaneous melanoma. (2021) (0)
- Lab-on-chip tracing circulating tumour cells (2013) (0)
- Genetic association of gemcitabine/carboplatin induced myelosuppression in patients with non-small cell lung cancer using whole exome sequencing (2016) (0)
- Transgenerational Phenotypic Tuning of Offspring : Adaptive Responses to a Prenatal Environmental Challenge in Chickens (2008) (0)
- ICROARRA Y Technologie s Technologie s Research Repor t Monitoring of Representational Differenc e Analysis Subtraction Procedures by Globa l (2002) (0)
- Spatial detection of fetal marker genes expressed at low level in adult human heart tissue (2017) (0)
- Abstract Template (2014) (0)
- Learning Stationary Markov Processes with Contrastive Adjustment (2023) (0)
- Integration of single-cell RNA and protein data identifies novel clinically-relevant lymphocyte phenotypes in breast cancers (2022) (0)
- Transcript Profiling Tools (2008) (0)
- Whole-genome sequencing and gene network modules predict gemcitabine/carboplatin-induced myelosuppression in non-small cell lung cancer patients (2020) (0)
- Seamless integration of image and molecular analysis for spatial transcriptomics workflows (2020) (0)
- Subject Index Vol. 69, 2001 (2002) (0)
- Dog genetic data and forensic evidence. (2001) (0)
- Human squamous cell carcinoma, Visium (2021) (0)
- Spatial Transcriptomics. Digital Pathology to Investigate Intratumor Heterogeneity in Breast Cancer. (2016) (0)
- Spatial Multimodal Analysis of Transcriptomes and Metabolomes in Tissues (2023) (0)
- Dissecting genetic heterogeneity in stage III cutaneous malignant melanoma with spatially resolved transcriptomics. (2018) (0)
- Hypermethylation status of the MGMT promoter in melanoma tumours in relation to clinical response to chemotherapy (2006) (0)
- Microarray analysis using disiloxyl 70mer oligonucleotides (2007) (0)
- New insights into the human heart development using a combined spatial and single-cell transcriptomics approach (2018) (0)
- 05.16 Transcriptome visualisation of the inflamed rheumatoid arthritis joint (2017) (0)
- Comparison of data for the expression of four different clones of an aspen ubiquitin gene measured b (2011) (0)
- Functional genomics of wood formation in hybrid aspen. (2003) (0)
- Ribosomal protein gene expression in aspen leaves during autumn senescence (2011) (0)
- Comparison of total and cytoplasmic mRNA reveals global regulation by nuclear retention and miRNAs (2012) (0)
- Dynamic Analysis of Viral Populations by Direct DNA Sequencing and Solid-Phase Technology (1998) (0)
- Genetic variation of the MC1R gene and the risk for cutaneous malignant melanoma in the Swedish population (2005) (0)
- ' s response to reviews Global Gene Expression Analysis in Time Series Following N-Acetyl L-Cysteine Induced Epithelial Title : Differentiation of Human Normal and Cancer Cells In Vitro (2005) (0)
- Genome analysis Improved gap size estimation for scaffolding algorithms (2012) (0)
- Evaluation of methods for whole genome and transcriptome sequencing from nanograms of FFPE samples (2016) (0)
- Genome-wide mapping of promoter-anchored interactions with close to single-enhancer resolution (2015) (0)
- Proportional amplification of cDNA tags for global gene expression analysis in small tissue samples (2000) (0)
- Abstract 5026: Association to drug-induced leukopenia using whole-exome sequencing of non-small cell lung cancer patients on gemcitabine/carboplatin regimen (2017) (0)
- The spatial transcriptomic landscape of the healing mouse intestine following damage (2022) (0)
- Single-cell and spatial transcriptomics enables probabilistic inference of cell type topography (2020) (0)
- Correction to Activated Paper Surfaces for the Rapid Hybridization of DNA through Capillary Transport (2013) (0)
- MicroRNA repertoire of primary human bone derived cells and MG63-cells - Polymorphic binding sites in putative target genes (2007) (0)
- Abstract PD4-01: PD4-01 Spatial transcriptomics reveals a substantial heterogeneity in TNBC tumor and stroma compartments with potential clinical implications (2023) (0)
- Genomics: Transcript Profiling and Reverse Genetics Applications Functional Arabidopsis Versatile Gene-Specific Sequence Tags for (2007) (0)
- Pigmentosum Patient Gene Mutations in a Xeroderma p 53 a Multitude of Simultaneously Present Epidermal Neoplastic Lesions Contain Clones of Normal Keratinocytes and a Variety of Updated (2006) (0)
- Stationary and portable sequencing-based approaches for tracing wastewater contamination in urban stormwater systems (2018) (0)
- Genes and variants in hematopoiesis-related pathways are associated with gemcitabine/carboplatin-induced thrombocytopenia (2019) (0)
- Persistence ofAzidothymidine-Resistant Human Immunodeficiency VirusType1RNA Genotypes inPosttreatment Sera (1992) (0)
- Technical Advance Persistent p53 Mutations in Single Cells from Normal Human Skin (2001) (0)
- Contents Vol. 69, 2001 (2002) (0)
- Malassezia sympodialis Skin Commensal Yeast Genomic Insights into the Atopic Eczema-Associated 2013 (2013) (0)
- Preparation of plant tissue to enable Spatial Transcriptomics profiling using barcoded microarrays (2018) (0)
- Molecular cloning of UPD-glucose dehydrogenase from cambium of poplar (Populus tremula x tremuloides) (2010) (0)
- Patterns of gene expression in RA synovial tissue; Inter patient variability greater then intra patient variability in a small study (2005) (0)
- A radical switch in clonality reveals a stem cell niche in the epiphyseal growth plate (2019) (0)
- Microarray analysis of the regulation of TNFa-stimulated PGE2 production in gingival fibroblasts : special reference to intracellular signal transduction pathways (2008) (0)
- 098 Age-related reduction of fibroblast size induces hepatocyte growth factor expression in a YAP/TAZ dependent manner (2021) (0)
- SpatialCPie: an R/Bioconductor package for spatial transcriptomics cluster evaluation (2020) (0)
- Expression of metallothionein genes (PMt) in aspen leaves during autumn senescence (2011) (0)
- and from Serum Direct Capture of Hepatitis C Virus RNA Cooperative Oligonucleotides Mediating (1998) (0)
- Classification of SNP genotypes by a Gaussian mixture model (2007) (0)
- Single-Stranded Nucleic Acids Regulate TLR3/4/7 Activation through Interference with Clathrin-Mediated Endocytosis (2018) (0)
- Identification of early neurodegenerative pathways in progressive multiple sclerosis (2022) (0)
- Hierarchical clustering of gene-expression profiles during autumn senescence in aspen (2011) (0)
- Brief Gene Mapping Reports A / B / C / D / E (2005) (0)
- Interrogation of polyguaninine nucleotide repeat variability in human T-cells by whole genome sequencing of single cells (2011) (0)
- Single-Cell and Spatial Transcriptomic Analysis of Human Skin Delineates Intercellular Communication and Pathogenic Cells. (2023) (0)
- Abstract 182: Recapitulating spatial tumor morphology using automated classifier in triple negative breast cancer (2021) (0)
- The spatial RNA integrity number assay for in situ evaluation of transcriptome quality (2021) (0)
- Unravelling differences in the transcriptome of two closely related populus special (2004) (0)
- Abstract 5028: Whole exome sequencing and genetic association of gemcitabine/carboplatin induced thrombocytopenia in non-small cell lung cancer patients (2017) (0)
- A microwell chip for parallel culture and analysis of stem cells (2009) (0)
- Abstract 129: An integrated multi-omic cellular atlas of human breast cancers (2021) (0)
- UvA-DARE ( Digital Academic Repository ) The Gene Expression Profile in the Synovium as a Predictor of the Clinical Response to Infliximab Treatment in Rheumatoid Arthritis (2010) (0)
- Solid-Phase Differential Display (1999) (0)
- Spatial maps of prostate cancer transcriptomes reveal an unexplored landscape of heterogeneity (2018) (0)
- DNA Technology for Molecular Analysis of Viruses (2002) (0)
- p53 gene mutations are common in clones of morphologically normal keratinocytes as well as in neoplastic lesions in xeroderma pigmentosum (XP) (1998) (0)
- BESST - Efficient scaffolding of large fragmented assemblies (2014) (0)
- Spatial Transcriptomics characterization of Alzheimer’s disease in the adult mouse brain (2019) (0)
- Gene expression analysis of synovial tissue biopsies obtained from rheumatoid arthritis patients prior to infliximab treatment (2008) (0)
- Spatio-temporal analysis of prostate tumours suggests the pre-existence of ADT-resistant expression clones (2020) (0)
- Investigating the chemopreventive role of ursodeoxycholic acid in colorectal cancer cells (2006) (0)
- MP45-14 THE SPATIAL LANDSCAPE OF CLONAL SOMATIC MUTATIONS IN BENIGN AND MALIGNANT PROSTATE EPITHELIA (2022) (0)
- Genetic alterations in the 9Q22.3 region and P53 in sporadic malignant melanoma (1998) (0)
- Decoding spatiotemporal gene expression of the developing human spinal cord and implications for ependymoma origin (2022) (0)
- Automation of Spatial Transcriptomics library preparation to enable rapid and robust insights into spatial organization of tissues (2020) (0)
- A Transcriptome Atlas of a Cross Section of a Multifocal Prostate Cancer (2020) (0)
- 1711P Spatial transcriptomics reveals substantial heterogeneity in TNBC tumor and stroma compartments with potential clinical implications (2022) (0)
- Gene expression profiling of periodontitis-affected gingival tissue by spatial transcriptomics (2018) (0)
- Transcript nuclear retention effects quantification of gene expression levels (2011) (0)
- Integrating spatial gene expression and breast tumour morphology via deep learning (2020) (0)
- Spatio-temporal analysis of prostate tumors in situ suggests the pre-existence of ADT-resistance (2020) (0)
- Transcriptomics of cardiac biopsies reveals differences in patients with or without diagnostic parameters for heart failure with preserved ejection fraction (2019) (0)
- Spatial transcriptomic analysis of virtual prostate biopsy reveals confounding effect of heterogeneity on genomic signature scoring (2023) (0)
- BAP1: The first mutated gene causing familial uveal melanoma. (2012) (0)
- Association of melanoma risk with phenotype and MC1R genotype in the Swedish population (2006) (0)
- Differential gene expression and protein expression levels of MMP and TIMP molecules in response to glucocorticoid treatment in arthritic patients (2004) (0)
- Patterns of gene expression in rheumatoid arthritis synovial tissue: inter-patient variability greater then intra-patient variability in a small study (2005) (0)
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