Job Dekker
#54,543
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Dutch biochemist
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Job Dekkerbiology Degrees
Biology
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Biochemistry
#617
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#710
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Biology
Job Dekker's Degrees
- PhD Biochemistry University of Amsterdam
Why Is Job Dekker Influential?
(Suggest an Edit or Addition)According to Wikipedia, Job Dekker is a Dutch biologist. Dekker is a professor in the Department of Systems Biology, and the Department of Biochemistry and Molecular Biotechnology at the University of Massachusetts Chan Medical School and an Investigator at the Howard Hughes Medical Institute.
Job Dekker's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome (2009) (6558)
- Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project (2007) (5196)
- Capturing Chromosome Conformation (2002) (3324)
- Spatial partitioning of the regulatory landscape of the X-inactivation centre (2012) (2436)
- The accessible chromatin landscape of the human genome (2012) (2395)
- The ENCODE (ENCyclopedia Of DNA Elements) Project (2004) (2194)
- An integrated encyclopedia of DNA elements in the human genome (2012) (2080)
- A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression (2011) (1802)
- Mediator and Cohesin Connect Gene Expression and Chromatin Architecture (2010) (1714)
- A User's Guide to the Encyclopedia of DNA Elements (ENCODE) (2011) (1467)
- The long-range interaction landscape of gene promoters (2012) (1394)
- HiC-Pro: an optimized and flexible pipeline for Hi-C data processing (2015) (1265)
- Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements. (2006) (1135)
- Targeted Degradation of CTCF Decouples Local Insulation of Chromosome Domains from Genomic Compartmentalization (2017) (1104)
- Iterative Correction of Hi-C Data Reveals Hallmarks of Chromosome Organization (2012) (1085)
- Architectural Protein Subclasses Shape 3D Organization of Genomes during Lineage Commitment (2013) (1038)
- Exploring the three-dimensional organization of genomes: interpreting chromatin interaction data (2013) (951)
- Organization of the Mitotic Chromosome (2013) (797)
- Activation of proto-oncogenes by disruption of chromosome neighborhoods (2015) (769)
- Expanded encyclopaedias of DNA elements in the human and mouse genomes (2020) (765)
- Hi-C: a comprehensive technique to capture the conformation of genomes. (2012) (714)
- The 3D Genome as Moderator of Chromosomal Communication (2016) (701)
- Quantitative analysis of chromosome conformation capture assays (3C-qPCR) (2007) (666)
- The hierarchy of the 3D genome. (2013) (654)
- Condensin-Driven Remodeling of X-Chromosome Topology during Dosage Compensation (2015) (653)
- Defining functional DNA elements in the human genome (2014) (647)
- Proximity among distant regulatory elements at the beta-globin locus requires GATA-1 and FOG-1. (2005) (550)
- Spatial Organization of the Mouse Genome and Its Role in Recurrent Chromosomal Translocations (2012) (528)
- A pathway for mitotic chromosome formation (2018) (451)
- The 4D nucleome project (2017) (445)
- Mapping Nucleosome Resolution Chromosome Folding in Yeast by Micro-C (2015) (445)
- An encyclopedia of mouse DNA elements (Mouse ENCODE) (2012) (438)
- Predictive Polymer Modeling Reveals Coupled Fluctuations in Chromosome Conformation and Transcription (2014) (401)
- Hi-C: A Method to Study the Three-dimensional Architecture of Genomes. (2010) (392)
- Patterns of Growth and Decline in Lung Function in Persistent Childhood Asthma. (2016) (383)
- The three 'C' s of chromosome conformation capture: controls, controls, controls (2005) (367)
- Genome-wide Maps of Nuclear Lamina Interactions in Single Human Cells (2015) (366)
- Heterochromatin drives compartmentalization of inverted and conventional nuclei (2019) (333)
- Structural organization of the inactive X chromosome in the mouse (2016) (311)
- A mechanical basis for chromosome function. (2004) (302)
- The three-dimensional folding of the α-globin gene domain reveals formation of chromatin globules (2011) (301)
- Cohesin-based chromatin interactions enable regulated gene expression within preexisting architectural compartments (2013) (300)
- Mechanisms that regulate localization of a DNA double-strand break to the nuclear periphery. (2009) (299)
- Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex (2007) (287)
- The Hitchhiker's guide to Hi-C analysis: practical guidelines. (2015) (283)
- Extensive Heterogeneity and Intrinsic Variation in Spatial Genome Organization (2019) (282)
- Correlated alterations in genome organization, histone methylation, and DNA–lamin A/C interactions in Hutchinson-Gilford progeria syndrome (2013) (280)
- MORC Family ATPases Required for Heterochromatin Condensation and Gene Silencing (2012) (280)
- Ultrastructural details of mammalian chromosome architecture (2019) (265)
- Gene Regulation in the Third Dimension (2008) (249)
- Cohesin-dependent globules and heterochromatin shape 3D genome architecture in S. pombe (2014) (245)
- Structural and functional diversity of Topologically Associating Domains (2015) (241)
- Sister Cohesion and Structural Axis Components Mediate Homolog Bias of Meiotic Recombination (2010) (237)
- Genomics tools for the unraveling of chromosome architecture (2010) (236)
- Evidence for Transcript Networks Composed of Chimeric RNAs in Human Cells (2012) (233)
- Progression of meiotic DNA replication is modulated by interchromosomal interaction proteins, negatively by Spo11p and positively by Rec8p. (2000) (226)
- Polycomb Repressive Complex 1 Generates Discrete Compacted Domains that Change during Differentiation. (2017) (225)
- Integrative detection and analysis of structural variation in cancer genomes (2018) (218)
- The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation. (2011) (210)
- Mapping networks of physical interactions between genomic elements using 5C technology (2007) (204)
- Long-range chromosomal interactions and gene regulation. (2008) (195)
- Long-Range Chromatin Interactions. (2015) (195)
- Chemical genetic strategy identifies histone deacetylase 1 (HDAC1) and HDAC2 as therapeutic targets in sickle cell disease (2010) (181)
- Condensin promotes the juxtaposition of DNA flanking its loading site in Bacillus subtilis (2015) (178)
- Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells (2015) (172)
- HiTC: exploration of high-throughput 'C' experiments (2012) (164)
- TAD disruption as oncogenic driver. (2016) (163)
- Segmental folding of chromosomes: A basis for structural and regulatory chromosomal neighborhoods? (2013) (161)
- High-throughput genome scaffolding from in-vivo DNA interaction frequency (2013) (156)
- Mapping in Vivo Chromatin Interactions in Yeast Suggests an Extended Chromatin Fiber with Regional Variation in Compaction* (2008) (154)
- Hi-C 2.0: An optimized Hi-C procedure for high-resolution genome-wide mapping of chromosome conformation. (2017) (153)
- Analysis of long-range chromatin interactions using Chromosome Conformation Capture. (2012) (151)
- Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin (2015) (147)
- CTCF-mediated topological boundaries during development foster appropriate gene regulation (2016) (130)
- Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains (2018) (127)
- Invariant TAD Boundaries Constrain Cell-Type-Specific Looping Interactions between Promoters and Distal Elements around the CFTR Locus. (2016) (120)
- The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes (2017) (118)
- Hi-C 2.0: An Optimized Hi-C Procedure for High-Resolution Genome-Wide Mapping of Chromosome Conformation (2016) (115)
- Yeast Silent Mating Type Loci Form Heterochromatic Clusters through Silencer Protein-Dependent Long-Range Interactions (2009) (113)
- Mapping Chromatin Interactions by Chromosome Conformation Capture (2006) (111)
- Cell-type-specific long-range looping interactions identify distant regulatory elements of the CFTR gene (2010) (110)
- SPEN integrates transcriptional and epigenetic control of X-inactivation (2020) (108)
- Mapping cis- and trans- chromatin interaction networks using chromosome conformation capture (3C). (2009) (108)
- Enhanced yeast one-hybrid (eY1H) assays for high-throughput gene-centered regulatory network mapping (2011) (107)
- Local Genome Topology Can Exhibit an Incompletely Rewired 3D-Folding State during Somatic Cell Reprogramming. (2016) (105)
- SMC complexes differentially compact mitotic chromosomes according to genomic context (2017) (105)
- Mechanisms and Functions of Chromosome Compartmentalization. (2020) (102)
- A chromosome folding intermediate at the condensin-to-cohesin transition during telophase (2019) (101)
- Measuring the reproducibility and quality of Hi-C data (2017) (96)
- My5C: web tools for chromosome conformation capture studies (2009) (96)
- Disease-Causing 7.4 kb Cis-Regulatory Deletion Disrupting Conserved Non-Coding Sequences and Their Interaction with the FOXL2 Promotor: Implications for Mutation Screening (2009) (92)
- SMARCA4 regulates gene expression and higher-order chromatin structure in proliferating mammary epithelial cells (2016) (84)
- CTCF sites display cell cycle–dependent dynamics in factor binding and nucleosome positioning (2018) (83)
- 3C-based technologies to study the shape of the genome. (2012) (81)
- Chromatin globules: a common motif of higher order chromosome structure? (2011) (81)
- Perspectives on ENCODE (2020) (79)
- C-BERST: Defining subnuclear proteomic landscapes at genomic elements with dCas9-APEX2 (2017) (75)
- The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome (2019) (73)
- Two ways to fold the genome during the cell cycle: insights obtained with chromosome conformation capture (2014) (72)
- A closer look at long-range chromosomal interactions. (2003) (71)
- Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation. (2019) (70)
- Molecular Cell Review The Hierarchy of the 3 D Genome (2013) (68)
- The 4 D nucleome project (2017) (68)
- High-Affinity Sites Form an Interaction Network to Facilitate Spreading of the MSL Complex across the X Chromosome in Drosophila. (2015) (67)
- Integrating one-dimensional and three-dimensional maps of genomes (2010) (67)
- The yeast genome undergoes significant topological reorganization in quiescence (2015) (66)
- GC- and AT-rich chromatin domains differ in conformation and histone modification status and are differentially modulated by Rpd3p (2007) (64)
- The active FMR1 promoter is associated with a large domain of altered chromatin conformation with embedded local histone modifications (2006) (63)
- Targeted degradation of CTCF decouples local insulation of chromosome domains from higher-order genomic compartmentalization (2017) (61)
- Systematic evaluation of chromosome conformation capture assays (2020) (60)
- Transcriptional Silencers in Drosophila Serve a Dual Role as Transcriptional Enhancers in Alternate Cellular Contexts. (2019) (59)
- RUNX1 contributes to higher-order chromatin organization and gene regulation in breast cancer cells. (2016) (59)
- Chromosome Conformation Capture Carbon Copy Technology (2007) (56)
- CBFβ-SMMHC Inhibition Triggers Apoptosis by Disrupting MYC Chromatin Dynamics in Acute Myeloid Leukemia (2018) (55)
- Extremely Long-Range Chromatin Loops Link Topological Domains to Facilitate a Diverse Antibody Repertoire. (2016) (55)
- Mapping the 3D genome: Aiming for consilience (2016) (55)
- Multimerization of the adenovirus DNA‐binding protein is the driving force for ATP‐independent DNA unwinding during strand displacement synthesis (1997) (54)
- Liquid chromatin Hi-C characterizes compartment-dependent chromatin interaction dynamics (2021) (52)
- Determining spatial chromatin organization of large genomic regions using 5C technology. (2009) (52)
- Yeast one-hybrid assays for gene-centered human gene regulatory network mapping (2011) (51)
- From cells to chromatin: capturing snapshots of genome organization with 5C technology. (2012) (48)
- HiC-Pro: an optimized and flexible pipeline for Hi-C data processing (2015) (48)
- Higher-Order Organization Principles of Pre-translational mRNPs (2018) (46)
- A mechanism for Ikaros regulation of human globin gene switching (2008) (45)
- Flexible ordering of antibody class switch and V(D)J joining during B-cell ontogeny (2013) (44)
- Heterochromatin drives organization of conventional and inverted nuclei (2018) (39)
- Highly structured homolog pairing reflects functional organization of the Drosophila genome (2018) (39)
- Multi-contact 3C reveals that the human genome during interphase is largely not entangled (2020) (39)
- Supramolecular organization of the photosynthetic apparatus of Rhodobacter sphaeroides (2002) (38)
- Mechanisms of Chromosome Folding and Nuclear Organization: Their Interplay and Open Questions. (2021) (38)
- Handbook of systems biology : concepts and insights (2013) (36)
- The genome-wide multi-layered architecture of chromosome pairing in early Drosophila embryos (2018) (35)
- Spatial organization of transcribed eukaryotic genes (2020) (33)
- Genetic and spatial organization of the unusual chromosomes of the dinoflagellate Symbiodinium microadriaticum (2021) (30)
- The Conformation of Yeast Chromosome III Is Mating Type Dependent and Controlled by the Recombination Enhancer. (2015) (29)
- ChIP-Quantitative Polymerase Chain Reaction (ChIP-qPCR). (2018) (28)
- The context of gene expression regulation (2012) (26)
- Compartment-dependent chromatin interaction dynamics revealed by liquid chromatin Hi-C (2019) (26)
- Cohesin mutations alter DNA damage repair and chromatin structure and create therapeutic vulnerabilities in MDS/AML (2020) (24)
- Epigenetic characteristics of the mitotic chromosome in 1D and 3D (2017) (22)
- Handbook of systems biology (2014) (22)
- Genetics and Genomics of Longitudinal Lung Function Patterns in Individuals with Asthma. (2016) (22)
- Polycomb Repressive Complex 1 Generates Discrete Compacted Domains that Change during Differentiation. (2018) (21)
- A cohesin traffic pattern genetically linked to gene regulation (2021) (20)
- Hi‐C 3.0: Improved Protocol for Genome‐Wide Chromosome Conformation Capture (2021) (19)
- Cohesin-mediated loop anchors confine the locations of human replication origins (2021) (19)
- Hi-C in Budding Yeast. (2015) (18)
- Crystal structure of the DNA binding domain of the transcription factor T-bet suggests simultaneous recognition of distant genome sites (2016) (17)
- Mediator and cohesin connect gene expression and chromatin architecture (2011) (17)
- Faculty Opinions recommendation of Long non-coding RNA HOTAIR reprograms chromatin state to promote cancer metastasis. (2012) (17)
- Detecting chromatin interactions between and along sister chromatids with SisterC (2020) (17)
- An Integrative Framework for Detecting Structural Variations in Cancer Genomes (2017) (16)
- Enzymatic degradation of the plant cell wall by a Bacteroides of human fecal origin. (1981) (16)
- Rapid Irreversible Transcriptional Reprogramming in Human Stem Cells Accompanied by Discordance between Replication Timing and Chromatin Compartment (2019) (15)
- Reply to Brunet and Doolittle: Both selected effect and causal role elements can influence human biology and disease (2014) (15)
- Heterogeneity and Intrinsic Variation in Spatial Genome Organization (2017) (15)
- Heterochromatin diversity modulates genome compartmentalization and loop extrusion barriers (2021) (14)
- Shelterin components mediate genome reorganization in response to replication stress (2017) (14)
- ChIP. (2018) (14)
- Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture (2021) (13)
- 3C-Based Chromatin Interaction Analyses. (2018) (12)
- Mitotic chromosomes fold by condensin-dependent helical winding of chromatin loop arrays (2017) (12)
- Biological techniques: Chromosomes captured one by one (2013) (12)
- CBFβ-SMMHC Inhibition Triggers Apoptosis by Disrupting MYC Chromatin Dynamics in Acute Myeloid Leukemia (2018) (11)
- The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome (2019) (11)
- Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation (2020) (11)
- Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome length and individualization (2020) (11)
- Long noncoding RNA programs active chromatin domain to coordinate homeotic gene activation (2013) (9)
- Chromosome Conformation Capture (3C) in Budding Yeast. (2015) (9)
- Large domains of heterochromatin direct the formation of short mitotic chromosome loops (2020) (9)
- Formaldehyde Cross-Linking. (2018) (9)
- Single-cell chromatin interactions reveal regulatory hubs in dynamic compartmentalized domains (2018) (8)
- The Spatial Architecture of Chromosomes (2013) (8)
- Chromosome Conformation Capture Carbon Copy (5C) in Budding Yeast. (2015) (7)
- Generation of ChIP-Loop Libraries. (2018) (7)
- Biochemically distinct cohesin complexes mediate positioned loops between CTCF sites and dynamic loops within chromatin domains (2021) (7)
- Nutritional control regulates symbiont proliferation and life history in coral-dinoflagellate symbiosis (2022) (7)
- Connecting the genome: dynamics and stochasticity in a new hierarchy for chromosome conformation (2013) (7)
- Generation of Control Ligation Product Libraries for 3C Analyses. (2018) (6)
- The little skate genome and the evolutionary emergence of wing-like fin appendages (2022) (6)
- Detecting chromatin interactions along and between sister chromatids with SisterC (2020) (6)
- Generation of 3C Libraries from Cross-Linked Cells. (2018) (6)
- Stag1 and Stag2 regulate cell fate decisions in hematopoiesis through non-redundant topological control (2019) (5)
- The Structure and Function of Chromatin and Chromosomes (2011) (5)
- Linker histone H1.8 inhibits chromatin binding of condensins and DNA topoisomerase II to tune chromosome length and individualization (2021) (5)
- CTCF and cohesin help neurons raise their self-awareness (2012) (5)
- Publisher Correction: Heterochromatin drives compartmentalization of inverted and conventional nuclei (2019) (5)
- Chromosome-scale assembly of the coral endosymbiont Symbiodinium microadriaticum genome provides insight into the unique biology of dinoflagellate chromosomes (2020) (5)
- CTCF–CTCF loops and intra-TAD interactions show differential dependence on cohesin ring integrity (2022) (4)
- Structural maintenance of chromosome complexes differentially compact mitotic chromosomes according to genomic context (2017) (4)
- Loops, topologically associating domains, compartments, and territories are elastic and robust to dramatic nuclear volume swelling (2022) (4)
- Randomized ligation control for chromosome conformation capture. (2015) (4)
- Corrigendum: The 4D nucleome project (2017) (4)
- Clustering of strong replicators associated with active promoters is sufficient to establish an early‐replicating domain (2020) (4)
- Gene dates, parties and galas (2009) (4)
- Two ways to fold the genome during the cell cycle: insights obtained with chromosome conformation capture (2014) (3)
- Linker histone H1.8 inhibits chromatin-binding of condensins and DNA topoisomerase II to tune chromosome compaction and individualization [preprint] (2021) (3)
- Polymerase Chain Reaction (PCR) Detection of 3C Ligation Products Present in 3C, ChIP-Loop, and Control Libraries: Library Titration and Interaction Frequency Analysis. (2018) (3)
- Preparation of Cross-Linked Chromatin for ChIP. (2018) (3)
- ChIP-chip. (2020) (3)
- Chromosome-Level Reference Genomes for Two Strains of Caenorhabditis briggsae: An Improved Platform for Comparative Genomics (2021) (3)
- Heterochromatin drives compartmentalization of inverted and conventional nuclei (2019) (3)
- Mapping chromatin interactions with 5C technology: 5C; a quantitative approach to capturing chromatin conformation over large genomic distances (2013) (3)
- Multi-contact 3C data reveal that the human genome is largely unentangled (2020) (3)
- Measuring Chromatin Structure in Budding Yeast. (2015) (3)
- Nuclear Biology: What’s Been Most Surprising? (2013) (2)
- 4C Analysis of 3C, ChIP-Loop, and Control Libraries. (2018) (2)
- Cohesin-mediated loop anchors confine the locations of human replication origins (2022) (2)
- The non-canonical SMC protein SmcHD1 antagonises TAD formation on the inactive X chromosome (2018) (2)
- Translocation Mapping Exposes the Risky Lifestyle of B Cells (2011) (2)
- Cohesin dependent compaction of mitotic chromosomes (2016) (2)
- Effect of fungicedes on nucleic acid synthesis and nuclear function (1977) (2)
- Regulation of gene expression through chromatin interaction networks (2007) (2)
- Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes (2022) (2)
- Chromosome Folding: Contributions of Chromosome Conformation Capture and Polymer Physics (2019) (2)
- A Guide to Packing Your DNA (2016) (2)
- Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization (2022) (2)
- Chromatin Immunoprecipitation (ChIP) Analysis of Protein-DNA Interactions. (2018) (1)
- S cerevisiae genome as a confined equilibrium polymer brush (2013) (1)
- Loops, TADs, Compartments, and Territories are Elastic and Robust to Dramatic Nuclear Volume Swelling (2021) (1)
- An encyclopedia of mouse DNA elements (Mouse ENCODE) (2012) (1)
- Systematic evaluation of chromosome conformation capture assays [preprint] (2021) (1)
- Faculty of 1000 evaluation for Long non-coding RNAs: insights into functions. (2012) (1)
- rad21 Is Involved in Corneal Stroma Development by Regulating Neural Crest Migration (2020) (1)
- Polymer models of yeast S. cerevisiae genome organization (2013) (1)
- S cerevisiae genome as a confined equilibrium polymer brush (2013) (1)
- The little skate genome and the evolutionary emergence of wing-like fins (2023) (1)
- Erratum to: Chromosome-Level Assembly of the Atlantic Silverside Genome Reveals Extreme Levels of Sequence Diversity and Structural Genetic Variation (2021) (1)
- Three‐Dimensional Architecture of Genomes (2011) (1)
- Decision letter: How subtle changes in 3D structure can create large changes in transcription (2020) (1)
- 5C Analysis of 3C, ChIP-Loop, and Control Libraries. (2018) (1)
- Corrigendum: CTCF-mediated topological boundaries during development foster appropriate gene regulation. (2017) (1)
- Mapping subnuclear proteomes onto genome architecture via C-BERST (2018) (1)
- Integrating Structural and Functional Studies Leads to a New Model of β-Globin Activation That Suggests Distinct Initiation and Maintenance States (2011) (1)
- Three‐dimensional folding of genomes (2011) (0)
- Faculty of 1000 evaluation for How eukaryotic genes are transcribed. (2012) (0)
- Progress toward an amplifiable metabolic label for DNA: conversion of 4-thiothymidine (4sT) to 5-methyl-2′-deoxycytidine and synthesis of a 4sT phosphorodiamidate prodrug (2018) (0)
- Decision letter: MeCP2 nuclear dynamics in live neurons results from low and high affinity chromatin interactions (2019) (0)
- Faculty of 1000 evaluation for Nuclear organization: taking a position on gene expression. (2012) (0)
- Mating type specific chromosome conformation in Saccharomyces cerevisiae (2013) (0)
- Diverse silent chromatin states modulate genome compartmentalization and loop extrusion barriers (2022) (0)
- Faculty of 1000 evaluation for Gene regulation through nuclear organization. (2012) (0)
- Some properties of the soluble c-type cytochrome(s) from Escherichia coli (2004) (0)
- Regulation of the mitotic chromosome folding machines (2022) (0)
- Faculty of 1000 evaluation for The gateway to transcription: identifying, characterizing and understanding promoters in the eukaryotic genome. (2012) (0)
- Faculty of 1000 evaluation for No-nonsense functions for long noncoding RNAs. (2012) (0)
- Faculty Opinions recommendation of Genome-wide detection and analysis of hippocampus core promoters using DeepCAGE. (2012) (0)
- Faculty Opinions recommendation of The Evf-2 noncoding RNA is transcribed from the Dlx-5/6 ultraconserved region and functions as a Dlx-2 transcriptional coactivator. (2012) (0)
- Folding principles of genomes (2013) (0)
- GATA-1 Directly Induces Physical Proximity between the LCR and β Globin Promoter in Erythroid Cells. (2004) (0)
- Multi-contact 3C reveals that the human genome during interphase is largely not entangled (2020) (0)
- Revisiting chromatin packaging in mouse sperm (2022) (0)
- Measuring Inaccessible Chromatin Genome-Wide Using Protect-seq. (2023) (0)
- Beads on a String (2015) (0)
- Author Correction: Perspectives on ENCODE (2022) (0)
- Faculty Opinions recommendation of Molecular biology. Chromatin higher order folding--wrapping up transcription. (2012) (0)
- Faculty of 1000 evaluation for Transcriptional regulation in mammalian cells by sequence-specific DNA binding proteins. (2012) (0)
- Author Correction: Multiscale reorganization of the genome following DNA damage facilitates chromosome translocations via nuclear actin polymerization. (2023) (0)
- Publisher Correction: Heterochromatin drives compartmentalization of inverted and conventional nuclei (2019) (0)
- Protein Sorting in Cyanobacteria and Plant Chloroplasts (1992) (0)
- Integrative detection and analysis of structural variation in cancer genomes (2018) (0)
- Inner Nuclear Protein Matrin-3 Coordinates Hematopoietic Cell Transcription and Differentiation By Stabilizing Chromatin Architecture (2021) (0)
- Long‐range gene regulation in the context of chromatin domains (2016) (0)
- Faculty of 1000 evaluation for Chromosome territories. (2012) (0)
- Mechanisms of insertions at a DNA double-strand break (2022) (0)
- Faculty of 1000 evaluation for Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions. (2012) (0)
- Single-allele chromatin interactions identify regulatory hubs in dynamic compartmentalized domains (2018) (0)
- Mitotic chromosomes scale to nucleo-cytoplasmic ratio and cell size in Xenopus (2022) (0)
- Measuring the reproducibility and quality of Hi-C data (2019) (0)
- Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes (2022) (0)
- These references are cited in the additional data files. (2012) (0)
- Polymer Modeling of Dynamics and Disrupted Organization of Fragmented Chromatin (2018) (0)
- Understanding the mechanisms of IGF2 gene regulation in hepatocellular carcinoma cells (2012) (0)
- Author Correction: Expanded encyclopaedias of DNA elements in the human and mouse genomes (2022) (0)
- SisterC: A novel 3C-technique to detect chromatin interactions between and along sister chromatids (2020) (0)
- Polymer models of yeast S. cerevisiae genome organization (2013) (0)
- Polymer Models Integrate Inverted Nuclear Geometry with Conventional HI-C Compartmentalization (2017) (0)
- Folding principles of genomes (2013) (0)
- Crystal Structure of the Tbox DNA binding domain of the transcription factor T-bet (2016) (0)
- Faculty Opinions recommendation of Mapping and quantifying mammalian transcriptomes by RNA-Seq. (2012) (0)
- A Conversation with Job Dekker. (2015) (0)
- Faculty of 1000 evaluation for Molecular mechanisms of long noncoding RNAs. (2012) (0)
- C-BERST: defining subnuclear proteomic landscapes at genomic elements with dCas9–APEX2 (2018) (0)
- Nutritional control regulates symbiont proliferation and life history in coral-dinoflagellate symbiosis (2022) (0)
- A Distant Regulatory 7.4 Kb Deletion Upstream of FOXL2 Causes BPES (2009) (0)
- Folding principles of genomes (2012) (0)
- Faculty Opinions recommendation of RNA maps reveal new RNA classes and a possible function for pervasive transcription. (2012) (0)
- Multi-omics comparison of malignant and normal uveal melanocytes reveals novel molecular features of uveal melanoma (2022) (0)
- In This Issue (2013) (0)
- Ikaros drives human haemoglobin switching by facilitating active chromatin hub formation (2007) (0)
- Capturing Chromosome Conformation Across Length Scales. (2023) (0)
- Chromosome decompaction and cohesin direct Topoisomerase II activity to establish and maintain an unentangled interphase genome (2022) (0)
- Decision letter: Controlling gene activation by enhancers through a drug-inducible topological insulator (2019) (0)
- A Minimal Polymer Model Integrates an Inverted Nuclear Geometry with Conventional Hi-C Compartmentalization (2017) (0)
- perspectiVes The 4D nucleome project (2017) (0)
- Author response: Linker histone H1.8 inhibits chromatin binding of condensins and DNA topoisomerase II to tune chromosome length and individualization (2021) (0)
- ARP2/3- and resection-coupled genome reorganization facilitates translocations (2021) (0)
- Faculty Opinions recommendation of Chromosome looping at the human alpha-globin locus is mediated via the major upstream regulatory element (HS -40). (2012) (0)
- Chromatin interaction analysis reveals changes in small chromosome and telomere clustering between epithelial and breast cancer cells (2015) (0)
- Decision letter: A complex regulatory landscape involved in the development of mammalian external genitals (2019) (0)
- Sequence analysis HiTC: exploration of high-throughput ‘C’ experiments (2012) (0)
- Mating type specific chromosome conformation in Saccharomyces cerevisiae (2013) (0)
- Faculty Opinions recommendation of Histone modification: cause or cog? (2012) (0)
- Decision letter: Massively multiplex single-molecule oligonucleosome footprinting (2020) (0)
- SPEN integrates transcriptional and epigenetic control of X-inactivation (2020) (0)
- Faculty of 1000 evaluation for Large non-coding RNAs: missing links in cancer? (2012) (0)
- Stag2 Regulates Hematopoietic Differentiation and Self-Renewal through Alterations in Gene Expression and Topological Control (2019) (0)
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