John Marioni
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Bioinformatics
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Computational Biology
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Biology
John Marioni's Degrees
- Masters Bioinformatics University of Oxford
Why Is John Marioni Influential?
(Suggest an Edit or Addition)According to Wikipedia, John Marioni is the Head of Research at the European Bioinformatics Institute and holds an appointment at the Wellcome Sanger Institute and the Cancer Research UK Cambridge Institute in Cambridge University. He is a computational biologist known for his research on statistical and computational methods for the analysis of genomics data, in particular single-cell biology and evolutionary genomics. He co-chairs the Human Cell Atlas Analysis Working Group.
John Marioni's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays. (2008) (2817)
- Intratumor heterogeneity in human glioblastoma reflects cancer evolutionary dynamics (2013) (1443)
- The Human Cell Atlas (2017) (1285)
- Understanding mechanisms underlying human gene expression variation with RNA sequencing (2010) (1277)
- Batch effects in single-cell RNA-sequencing data are corrected by matching mutual nearest neighbors (2018) (1181)
- Computational analysis of cell-to-cell heterogeneity in single-cell RNA-sequencing data reveals hidden subpopulations of cells (2015) (1008)
- A step-by-step workflow for low-level analysis of single-cell RNA-seq data with Bioconductor (2016) (984)
- Computational and analytical challenges in single-cell transcriptomics (2015) (958)
- The technology and biology of single-cell RNA sequencing. (2015) (862)
- Accounting for technical noise in single-cell RNA-seq experiments (2013) (861)
- Pooling across cells to normalize single-cell RNA sequencing data with many zero counts (2016) (817)
- A Bayesian deconvolution strategy for immunoprecipitation-based DNA methylome analysis (2008) (647)
- Resolving the fibrotic niche of human liver cirrhosis at single cell level (2019) (619)
- Eleven grand challenges in single-cell data science (2020) (553)
- Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data (2009) (495)
- A single-cell molecular map of mouse gastrulation and early organogenesis (2019) (481)
- Multi‐Omics Factor Analysis—a framework for unsupervised integration of multi‐omics data sets (2018) (473)
- Classification of low quality cells from single-cell RNA-seq data (2016) (462)
- Single Cell RNA-Sequencing of Pluripotent States Unlocks Modular Transcriptional Variation (2015) (437)
- scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells (2017) (436)
- EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data (2019) (418)
- An integrated resource for genome-wide identification and analysis of human tissue-specific differentially methylated regions (tDMRs). (2008) (399)
- High-throughput spatial mapping of single-cell RNA-seq data to tissue of origin (2015) (336)
- Normalizing single-cell RNA sequencing data: challenges and opportunities (2017) (331)
- Computational assignment of cell-cycle stage from single-cell transcriptome data. (2015) (329)
- High-resolution aCGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer (2007) (326)
- Heterogeneity in Oct4 and Sox2 Targets Biases Cell Fate in 4-Cell Mouse Embryos (2016) (324)
- Expression Atlas update—a database of gene and transcript expression from microarray- and sequencing-based functional genomics experiments (2013) (319)
- Expression Atlas update: from tissues to single cells (2019) (310)
- Tools for mapping high-throughput sequencing data (2012) (295)
- Single-cell multi-omics analysis of the immune response in COVID-19 (2021) (281)
- Sex-specific and lineage-specific alternative splicing in primates. (2010) (271)
- The human body at cellular resolution: the NIH Human Biomolecular Atlas Program (2019) (265)
- Resolving Early Mesoderm Diversification through Single Cell Expression Profiling (2016) (250)
- BASiCS: Bayesian Analysis of Single-Cell Sequencing Data (2015) (249)
- Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection (2012) (235)
- Aging increases cell-to-cell transcriptional variability upon immune stimulation (2017) (232)
- Single-Cell Landscape of Transcriptional Heterogeneity and Cell Fate Decisions during Mouse Early Gastrulation (2017) (232)
- MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data (2020) (229)
- Multi-omics profiling of mouse gastrulation at single cell resolution (2019) (224)
- A Genome-Wide Study of DNA Methylation Patterns and Gene Expression Levels in Multiple Human and Chimpanzee Tissues (2011) (201)
- Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression (2015) (193)
- Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing (2017) (191)
- Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data (2013) (179)
- Single-Cell Transcriptomics Uncovers Zonation of Function in the Mesenchyme during Liver Fibrosis (2019) (171)
- BioHMM: a heterogeneous hidden Markov model for segmenting array CGH data (2006) (163)
- Cooperativity and Rapid Evolution of Cobound Transcription Factors in Closely Related Mammals (2013) (155)
- Using single‐cell genomics to understand developmental processes and cell fate decisions (2018) (153)
- Pluripotent state transitions coordinate morphogenesis in mouse and human embryos (2017) (152)
- Extensive compensatory cis-trans regulation in the evolution of mouse gene expression (2012) (151)
- Breaking the waves: improved detection of copy number variation from microarray-based comparative genomic hybridization (2007) (147)
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression (2019) (146)
- Detection and removal of barcode swapping in single-cell RNA-seq data (2017) (141)
- Cells of the human intestinal tract mapped across space and time (2021) (141)
- Comparative RNA sequencing reveals substantial genetic variation in endangered primates. (2012) (139)
- Genomic-scale capture and sequencing of endogenous DNA from feces. (2010) (137)
- Hierarchical deconstruction of mouse olfactory sensory neurons: from whole mucosa to single-cell RNA-seq (2015) (133)
- Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis (2018) (131)
- Computational principles and challenges in single-cell data integration (2021) (127)
- Impact of Alternative Splicing on the Human Proteome (2017) (119)
- Long-range enhancers regulating Myc expression are required for normal facial morphogenesis (2014) (117)
- CellBender remove-background: a deep generative model for unsupervised removal of background noise from scRNA-seq datasets (2019) (116)
- Random monoallelic gene expression increases upon embryonic stem cell differentiation. (2014) (114)
- Challenges in measuring and understanding biological noise (2019) (114)
- COMRADES determines in vivo RNA structures and interactions (2018) (111)
- Genome-wide Bisulfite Sequencing in Zygotes Identifies Demethylation Targets and Maps the Contribution of TET3 Oxidation (2014) (110)
- Differential abundance testing on single-cell data using k-nearest neighbor graphs (2021) (109)
- Corrigendum: Characterizing noise structure in single-cell RNA-seq distinguishes genuine from technical stochastic allelic expression (2015) (109)
- Testing for differential abundance in mass cytometry data (2017) (108)
- The pitfalls of platform comparison: DNA copy number array technologies assessed (2009) (107)
- Overcoming confounding plate effects in differential expression analyses of single-cell RNA-seq data (2016) (102)
- Population-scale single-cell RNA-seq profiling across dopaminergic neuron differentiation (2020) (101)
- Defining murine organogenesis at single cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation (2018) (100)
- Distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data (2018) (97)
- f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq (2017) (94)
- Transcriptional Heterogeneity in Naive and Primed Human Pluripotent Stem Cells at Single-Cell Resolution (2019) (92)
- Gene Expression Differences Among Primates Are Associated With Changes in a Histone Epigenetic Modification (2011) (91)
- Beyond comparisons of means: understanding changes in gene expression at the single-cell level (2016) (90)
- Identification of a regeneration-organizing cell in the Xenopus tail (2019) (90)
- Specificity of RNAi, LNA and CRISPRi as loss-of-function methods in transcriptional analysis (2017) (89)
- Functional Comparison of Innate Immune Signaling Pathways in Primates (2010) (88)
- LifeTime and improving European healthcare through cell-based interceptive medicine (2020) (87)
- Structure and evolutionary history of a large family of NLR proteins in the zebrafish (2015) (86)
- Peroxiredoxin-3 is overexpressed in prostate cancer and promotes cancer cell survival by protecting cells from oxidative stress (2013) (85)
- Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways (2014) (83)
- Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5′ splice site strength (2015) (82)
- RNA-Seq Gene Profiling - A Systematic Empirical Comparison (2014) (82)
- Stella modulates transcriptional and endogenous retrovirus programs during maternal-to-zygotic transition (2017) (81)
- Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis (2021) (78)
- Isolation and Comparative Transcriptome Analysis of Human Fetal and iPSC-Derived Cone Photoreceptor Cells (2017) (76)
- A comparison of dermatologists', surgeons' and general practitioners' surgical management of cutaneous melanoma (2004) (75)
- Codon-Driven Translational Efficiency Is Stable across Diverse Mammalian Cell States (2016) (75)
- ILC2-driven innate immune checkpoint mechanism antagonizes NK cell antimetastatic function in the lung (2020) (74)
- High-resolution mapping of transcriptional dynamics across tissue development reveals a stable mRNA–tRNA interface (2014) (73)
- Integrative analysis of array-comparative genomic hybridisation and matched gene expression profiling data reveals novel genes with prognostic significance in oesophageal adenocarcinoma (2011) (69)
- Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression (2017) (66)
- Support for a clade of Placozoa and Cnidaria in genes with minimal compositional bias (2018) (65)
- Mapping the developing human immune system across organs (2022) (65)
- How Single-Cell Genomics Is Changing Evolutionary and Developmental Biology. (2017) (65)
- A step-by-step workflow for low-level analysis of single-cell RNA-seq data. (2016) (63)
- Ageing compromises mouse thymus function and remodels epithelial cell differentiation (2020) (63)
- Molecular and neuronal homology between the olfactory systems of zebrafish and mouse (2015) (61)
- Assessing the reliability of spike-in normalization for analyses of single-cell RNA sequencing data (2017) (61)
- T cell cytolytic capacity is independent of initial stimulation strength (2018) (57)
- A roadmap for the Human Developmental Cell Atlas (2021) (57)
- Characterization of a common progenitor pool of the epicardium and myocardium (2021) (56)
- Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution (2017) (55)
- The Human Cell Atlas White Paper (2018) (55)
- Toward a Common Coordinate Framework for the Human Body (2019) (53)
- ESR1 gene amplification in breast cancer: a common phenomenon? (2008) (52)
- Contributions to drug resistance in glioblastoma derived from malignant cells in the sub-ependymal zone. (2015) (52)
- SRPK1 maintains acute myeloid leukemia through effects on isoform usage of epigenetic regulators including BRD4 (2018) (48)
- A transcriptomic atlas of mammalian olfactory mucosae reveals an evolutionary influence on food odor detection in humans (2019) (47)
- Molecular phenotyping reveals the identity of Barrett’s esophagus and its malignant transition (2021) (46)
- Correcting the Mean-Variance Dependency for Differential Variability Testing Using Single-Cell RNA Sequencing Data (2018) (45)
- Resolving the fibrotic niche of human liver cirrhosis using single-cell transcriptomics (2019) (41)
- iRAP - an integrated RNA-seq Analysis Pipeline (2014) (38)
- , comparison with gene expression arrays RNA-seq : An assessment of technical reproducibility and data (2008) (36)
- Whole-Body Single-Cell Sequencing Reveals Transcriptional Domains in the Annelid Larval Body (2018) (35)
- CTCF maintains regulatory homeostasis of cancer pathways (2018) (34)
- A high-content RNAi screen reveals multiple roles for long noncoding RNAs in cell division (2019) (33)
- SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements (2018) (33)
- IL‐7‐dependent compositional changes within the γδ T cell pool in lymph nodes during ageing lead to an unbalanced anti‐tumour response (2019) (33)
- Diverse Routes toward Early Somites in the Mouse Embryo. (2020) (32)
- Maturing Human CD127+ CCR7+ PDL1+ Dendritic Cells Express AIRE in the Absence of Tissue Restricted Antigens (2019) (31)
- Investigating higher order interactions in single cell data with scHOT (2019) (30)
- Effects of a brief course of azithromycin on soluble cell adhesion molecules and markers of inflammation in survivors of an acute coronary syndrome: A double-blind, randomized, placebo-controlled study. (2004) (29)
- Identifying Cell Types from Spatially Referenced Single-Cell Expression Datasets (2014) (28)
- bioWeb3D: an online webGL 3D data visualisation tool (2013) (22)
- Time-resolved single-cell analysis of Brca1 associated mammary tumourigenesis reveals aberrant differentiation of luminal progenitors (2021) (22)
- CpG island composition differences are a source of gene expression noise indicative of promoter responsiveness (2018) (21)
- High-resolution array-CGH and expression profiling identifies a novel genomic subtype of ER negative breast cancer (2007) (21)
- Correcting batch effects in single-cell RNA sequencing data by matching mutual nearest neighbours (2017) (20)
- Highly multiplexed spatially resolved gene expression profiling of mouse organogenesis (2020) (20)
- MOFA+: a probabilistic framework for comprehensive integration of structured single-cell data (2019) (20)
- Guidelines for reporting single-cell RNA-seq experiments (2019) (19)
- Coordinated changes in gene expression kinetics underlie both mouse and human erythroid maturation (2020) (19)
- A human fetal lung cell atlas uncovers proximal-distal gradients of differentiation and key regulators of epithelial fates (2022) (18)
- Locus-specific expression of transposable elements in single cells with CELLO-seq (2021) (18)
- Abstract 5016: The human sub-ependymal zone harbors glioblastoma precursors and represents a distinct therapeutic target. (2013) (16)
- Expression Atlas update: gene and protein expression in multiple species (2021) (15)
- Milo: differential abundance testing on single-cell data using k-NN graphs (2020) (15)
- Stimulation strength controls the rate of initiation but not the molecular organisation of TCR-induced signalling (2020) (15)
- Unsupervised removal of systematic background noise from droplet-based single-cell experiments using CellBender (2022) (15)
- Mapping Rora expression in resting and activated CD4+ T cells (2021) (14)
- A single-cell molecular map of mouse gastrulation and early organogenesis (2019) (14)
- Scalable latent-factor models applied to single-cell RNA-seq data separate biological drivers from confounding effects (2016) (14)
- Testing the mean matrix in high‐dimensional transposable data (2014) (13)
- Mosaic autosomal aneuploidies are detectable from single-cell RNAseq data (2017) (13)
- Single cell multi-omics profiling reveals a hierarchical epigenetic landscape during mammalian germ layer specification (2019) (13)
- 12 Grand Challenges in Single-Cell Data Science (2019) (12)
- A reference induced pluripotent stem cell line for large-scale collaborative studies (2021) (12)
- Secreted inhibitors drive the loss of regeneration competence in Xenopus limbs. (2021) (11)
- Multi-Omics factor analysis disentangles heterogeneity in blood cancer (2017) (10)
- Pooling across cells to normalize single-cell RNA sequencing data with many zero counts (2016) (10)
- Author response: The Human Cell Atlas (2017) (10)
- A reference human induced pluripotent stem cell line for large-scale collaborative studies. (2022) (10)
- CellRegMap: a statistical framework for mapping context‐specific regulatory variants using scRNA‐seq (2021) (10)
- Resolving the fibrotic niche of human liver cirrhosis at single-cell level (2019) (10)
- Publisher Correction: Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression (2020) (9)
- Mapping interindividual dynamics of innate immune response at single-cell resolution (2021) (9)
- Secreted inhibitors drive the loss of regeneration competence in Xenopus limbs (2020) (9)
- HDTD: analyzing multi-tissue gene expression data (2016) (9)
- Hidden copy number variation in the HapMap population (2008) (9)
- StabMap: Mosaic single cell data integration using non-overlapping features (2022) (8)
- Numbers of copy-number variations and false-negative rates will be underestimated if we do not account for the dependence between repeated experiments. (2007) (8)
- Rora regulates activated T helper cells during inflammation (2019) (8)
- Single-cell multi-omics profiling links dynamic DNA methylation to cell fate decisions during mouse early organogenesis (2022) (7)
- Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis (2021) (7)
- Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine (2021) (7)
- The T-box Transcription Factor Eomesodermin Governs Hemogenic Competence of Yolk-Sac Mesodermal Progenitors (2021) (6)
- T cell cytolytic capacity is independent of initial stimulation strength (2018) (6)
- Quantitative genetic analysis deciphers the impact of cis and trans regulation on cell-to-cell variability in protein expression levels (2020) (5)
- Coagulation factor V is a T-cell inhibitor expressed by leukocytes in COVID-19 (2022) (5)
- Regulation of constitutive and alternative mRNA splicing across the human transcriptome by PRPF8 is determined by 5′ splice site strength (2015) (5)
- Coordinated changes in gene expression kinetics underlie both mouse and human erythroid maturation (2021) (5)
- Placozoans are eumetazoans related to Cnidaria (2017) (5)
- Corrigendum: Accounting for technical noise in single-cell RNA-seq experiments (2014) (5)
- geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq (2021) (5)
- Time-resolved single-cell RNAseq profiling identifies a novel Fabp5-expressing subpopulation of inflammatory myeloid cells in chronic spinal cord injury (2020) (4)
- Author Correction: Challenges in measuring and understanding biological noise (2019) (4)
- Organoid modeling of human fetal lung alveolar development reveals mechanisms of cell fate patterning and neonatal respiratory disease. (2022) (4)
- geneBasis: an iterative approach for unsupervised selection of targeted gene panels from scRNA-seq (2021) (3)
- Correcting the Mean-Variance Dependency for Differential Variability Testing Using Single-Cell RNA Sequencing Data (2019) (3)
- Differential abundance testing on single-cell data using k-nearest neighbor graphs (2021) (3)
- Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression (2020) (3)
- DNA Methylation Arrays : Methods and Analysis (2008) (3)
- Factor V is an immune inhibitor that is expressed at increased levels in leukocytes of patients with severe Covid-19 (2021) (3)
- Whole-body single-cell sequencing of the Platynereis larva reveals a subdivision into apical versus non-apical tissues (2017) (3)
- Transposable element expression at unique loci in single cells with CELLO-seq (2020) (3)
- Precise identification of cell states altered in disease with healthy single-cell references (2022) (2)
- Mesp1 controls the chromatin and enhancer landscapes essential for spatiotemporal patterning of early cardiovascular progenitors (2022) (2)
- Additional file 1 of Beyond comparisons of means: understanding changes in gene expression at the single-cell level (2016) (2)
- Acquisition of alveolar fate and differentiation competence by human fetal lung epithelial progenitor cells (2021) (2)
- Human Developmental Cell Atlas: milestones achieved and the roadmap ahead (2020) (2)
- Regulatory Divergence of Transcript Isoforms in a Mammalian Model System (2015) (2)
- SOX9 maintains human foetal lung tip progenitor state by enhancing WNT and RTK signalling (2022) (2)
- Hypothesis Testing for the Covariance Matrix in High-Dimensional Transposable Data with Kronecker Product Dependence Structure (2014) (2)
- Staged developmental mapping and X chromosome transcriptional dynamics during mouse spermatogenesis (2019) (2)
- Tracking Early Mammalian Organogenesis – Prediction and Validation of Differentiation Trajectories at Whole Organism Scale (2023) (2)
- Single Cell Genomics meeting in Stockholm: from single cells to cell types (2014) (1)
- Interplay of cis and trans mechanisms driving transcription factor binding, chromatin, and gene expression evolution (2016) (1)
- LifeTime and improving European healthcare through cell-based interceptive medicine (2020) (1)
- Publisher Correction: Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression (2020) (1)
- Rabbit Development as a Model for Single Cell Comparative Genomics (2022) (1)
- Sensitive cluster-free differential expression testing (2023) (1)
- OMICS AND PROGNSTIC MARKERS (2013) (1)
- Interplay of cis and trans mechanisms driving transcription factor binding and gene expression evolution (2017) (1)
- COMPLEX EVOLUTIONARY DYNAMICS GENERATES GENETIC DIVERSITY AND INTRA-TUMOR HETEROGENEITY IN INDIVIDUAL PATIENTS WITH GLIOBLASTOMA (2014) (1)
- Eleven grand challenges in single-cell data science (2020) (1)
- scNMT-seq enables joint profiling of chromatin accessibility DNA methylation and transcription in single cells (2018) (1)
- RNAget: an API to securely retrieve RNA quantifications (2023) (1)
- bioWeb3D: an online webGL 3D data visualisation tool (2013) (1)
- Inter-gastruloid heterogeneity revealed by single cell transcriptomics time course: implications for organoid based perturbation studies (2022) (1)
- Molecular characterization of Left-Right symmetry breaking in the mouse embryo (2022) (1)
- Single-cell meta-analysis of SARS-CoV-2 entry genes across tissues and demographics (2021) (1)
- f-scLVM: scalable and versatile factor analysis for single-cell RNA-seq (2017) (1)
- Publisher Correction: The T-box transcription factor Eomesodermin governs haemogenic competence of yolk sac mesodermal progenitors (2021) (1)
- Base editing screens map mutations affecting interferon-γ signaling in cancer (2023) (1)
- Classification of low quality cells from single-cell RNA-seq data (2016) (1)
- Placozoa and Cnidaria are sister taxa (2018) (1)
- Erratum: Pluripotent state transitions coordinate morphogenesis in mouse and human embryos (2018) (1)
- Abstract LB-332: MDM4 transcription is discordantly regulated by common variants of p53 (2010) (0)
- Single cell census of early murine organogenesis reveals a novel pathway regulating generation of blood progenitors (2017) (0)
- A high-content RNAi screen reveals multiple roles for long noncoding RNAs in cell division (2020) (0)
- Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine (2021) (0)
- Differentiation dynamics of mammary epithelial cells revealed by single-cell RNA sequencing (2017) (0)
- Single-cell RNAseq Profiling of Early Heart Developmental Physiology (2017) (0)
- SRSF3 maintains transcriptome integrity in oocytes by regulation of alternative splicing and transposable elements (2018) (0)
- Who should treat patients with primary melanoma?: reply from authors (2005) (0)
- Author response: Support for a clade of Placozoa and Cnidaria in genes with minimal compositional bias (2018) (0)
- Investigating higher-order interactions in single-cell data with scHOT (2020) (0)
- Beyond comparisons of means: understanding changes in gene expression at the single-cell level (2016) (0)
- Altered composition of the γδ T cell pool in lymph nodes during ageing enhances tumour growth (2018) (0)
- Robust expression variability testing reveals heterogeneous T cell responses (2017) (0)
- Bcl11a Marks Mammary Progenitor Cells and Promotes Early Cellular Changes Associated with TNBC by Recruiting Chd8 (2018) (0)
- Origin and segregation of the human germline (2022) (0)
- Exploration of HiC data (2011) (0)
- Using HDTD to Analyze High-Dimensional Transposable Data : An Application in Genetics (2016) (0)
- Challenges in measuring and understanding biological noise (2019) (0)
- Mosaic autosomal aneuploidies are detectable from single-cell RNAseq data (2017) (0)
- Statistical Challenges in Single-Cell Biology (2017) (0)
- 2009 - DISRUPTING THE MASTER REGULATORS OF BLOOD EMERGENCE IN THE MOUSE EMBRYO (2019) (0)
- Isolating and characterising human cone photoreceptors for cell therapy (2016) (0)
- Reconstructing Blood Development Using a New Single-Cell Transcriptomic Atlas of Mouse Gastrulation and Organogenesis (2018) (0)
- EmptyDrops: distinguishing cells from empty droplets in droplet-based single-cell RNA sequencing data (2019) (0)
- ILC2-driven innate immune checkpoint mechanism antagonizes NK cell antimetastatic function in the lung (2020) (0)
- Time, Space and Single-Cell Resolved Molecular Trajectory of Cell Populations and the Laterality of the Body Plan at Gastrulation (2023) (0)
- Single Cell Genomics meeting in Stockholm: from single cells to cell types (2014) (0)
- 2018 – EOMESODERMIN GOVERNS THE HEMOGENIC COMPETENCE OF MURINE YOLK-SAC MESODERMAL PROGENITORS (2020) (0)
- CTCF maintains regulatory homeostasis of cancer pathways (2018) (0)
- The T-box transcription factor Eomesodermin governs haemogenic competence of yolk sac mesodermal progenitors (2021) (0)
- Supervised spatial inference of dissociated single-cell data with SageNet (2022) (0)
- Defining murine organogenesis at single-cell resolution reveals a role for the leukotriene pathway in regulating blood progenitor formation (2018) (0)
- O10: An improved algorithm for segmenting array-CGH data (2005) (0)
- HDTD: Statistical Inference about the Mean Matrix and the Covariance Matrices in High-Dimensional Transposable Data (2014) (0)
- Author response: Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways (2014) (0)
- Detection and removal of barcode swapping in single-cell RNA-seq data (2018) (0)
- Inferring the kinetics of stochastic gene expression from single-cell RNA-sequencing data (2013) (0)
- Deconstructing Olfaction with Transcriptomics: From Whole Tissue to Single-Cells, and from Zebrafish to Humans (2016) (0)
- Multi-omics profiling of mouse gastrulation at single-cell resolution (2019) (0)
- Abstract IA04: Understanding tumor heterogeneity in glioblastoma (2015) (0)
- comparison with gene expression arrays RNA-seq : An assessment of technical reproducibility and Material Supplemental (2008) (0)
- SRPK1 maintains acute myeloid leukemia through effects on isoform usage of epigenetic regulators including BRD4 (2018) (0)
- COMRADES determines in vivo RNA structures and interactions (2018) (0)
- O11TRANSCRIPTIONAL PROFILING OF DISTINCT COMPARTMENTS IN HUMAN GLIOBLASTOMA REVEALS KEY DYSREGULATED PATHWAYS (2014) (0)
- Title: Secreted inhibitors drive the loss of regeneration competence (2020) (0)
- MOFA+: a statistical framework for comprehensive integration of multi-modal single-cell data (2020) (0)
- O4.05GENETIC DIVERSITY AND INTRA-TUMOR HETEROGENEITY IN HUMAN GLIOBLASTOMA (2014) (0)
- A transcriptional and regulatory map of mouse somitogenesis (2023) (0)
- Author response: Stella modulates transcriptional and endogenous retrovirus programs during maternal-to-zygotic transition (2017) (0)
- An organoid CRISPRi screen revealed that SOX9 primes human fetal lung tip progenitors to receive WNT and RTK signals (2022) (0)
- Early human lung immune cell development and its role in epithelial cell fate (2022) (0)
- Flipping between Polycomb repressed and active transcriptional states introduces noise in gene expression (2017) (0)
- Comparison of single-cells versus pool-and-split samples (2016) (0)
- Multimodal decoding of human liver regeneration (2023) (0)
- Title : Defining murine organogenesis at single cell resolution reveals 1 a role for the leukotriene pathway in regulating blood 2 progenitor formation 3 4 (2017) (0)
- A Human Breast Cell Atlas Mapping the Homeostatic Cellular Shifts in the Adult Breast (2023) (0)
- P59 Transcriptome analysis in a mouse model of FKRP-deficient muscular dystrophy (2014) (0)
- Additional File 3_retina.xlsx (2017) (0)
- Abstract PR04: Differentiation dynamics of the developing mammary gland revealed by single-cell RNA-sequencing (2018) (0)
- CpG island composition differences are a source of gene expression noise indicative of promoter responsiveness (2018) (0)
- Author Correction: Challenges in measuring and understanding biological noise (2019) (0)
- Author response: Stimulation strength controls the rate of initiation but not the molecular organisation of TCR-induced signalling (2020) (0)
- Author response: Ageing compromises mouse thymus function and remodels epithelial cell differentiation (2020) (0)
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