John F Thompson
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John F Thompsoncomputer-science Degrees
Computer Science
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#12535
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Computer Engineering
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#184
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Data Science
#316
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#323
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Computational Linguistics
#2982
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#3016
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Computer Science
John F Thompson's Degrees
- PhD Computer Science Stanford University
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(Suggest an Edit or Addition)John F Thompson's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Plasma HDL cholesterol and risk of myocardial infarction: a mendelian randomisation study (2012) (2002)
- A comprehensive assessment of RNA-seq accuracy, reproducibility and information content by the Sequencing Quality Control consortium (2014) (799)
- Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse (2013) (706)
- A framework for the investigation of pleiotropy in two‐sample summary data Mendelian randomization (2017) (568)
- Direct RNA sequencing (2009) (463)
- Genomic Risk Prediction of Coronary Artery Disease in 480,000 Adults (2018) (359)
- E.coli Fis protein activates ribosomal RNA transcription in vitro and in vivo. (1990) (349)
- Overexpression of Eotaxin and the CCR3 Receptor in Human Atherosclerosis: Using Genomic Technology to Identify a Potential Novel Pathway of Vascular Inflammation (2000) (255)
- Crystal structure of cholesteryl ester transfer protein reveals a long tunnel and four bound lipid molecules (2007) (255)
- The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA (2010) (243)
- Quantification of the yeast transcriptome by single-molecule sequencing (2009) (201)
- Comprehensive Whole-Genome and Candidate Gene Analysis for Response to Statin Therapy in the Treating to New Targets (TNT) Cohort (2009) (197)
- Mechanical Strain Induces Specific Changes in the Synthesis and Organization of Proteoglycans by Vascular Smooth Muscle Cells* (2001) (195)
- What would you do if you could sequence everything? (2008) (192)
- Cellular factors couple recombination with growth phase: Characterization of a new component in the λ site-specific recombination pathway (1987) (190)
- How to use an article about genetic association: B: Are the results of the study valid? (2009) (171)
- Crystal Structure of Human Squalene Synthase (2000) (168)
- Natural genetic variation as a tool in understanding the role of CETP in lipid levels and disease Published, JLR Papers in Press, March 16, 2003. DOI 10.1194/jlr.R200018-JLR200 (2003) (151)
- True single-molecule DNA sequencing of a pleistocene horse bone. (2011) (132)
- Improving ancient DNA read mapping against modern reference genomes (2012) (132)
- Virtual Terminator nucleotides for next generation DNA sequencing (2009) (130)
- The properties and applications of single-molecule DNA sequencing (2011) (119)
- How to use an article about genetic association: A: Background concepts. (2009) (118)
- Single Molecule Sequencing with a HeliScope Genetic Analysis System (2010) (107)
- Separating the Mechanism-Based and Off-Target Actions of Cholesteryl Ester Transfer Protein Inhibitors With CETP Gene Polymorphisms (2010) (104)
- Protocol Dependence of Sequencing-Based Gene Expression Measurements (2011) (97)
- How to use an article about genetic association: C: What are the results and will they help me in caring for my patients? (2009) (83)
- Structure of E. coli 16S RNA elucidated by psoralen crosslinking (1983) (81)
- Placental Growth Factor Reduces Blood Pressure in a Uteroplacental Ischemia Model of Preeclampsia in Nonhuman Primates (2016) (80)
- Association Between the Coronary Artery Disease Risk Locus on Chromosome 9p21.3 and Abdominal Aortic Aneurysm (2008) (79)
- Phasing of protein-induced DNA bends in a recombination complex (1989) (76)
- The inter-arm blood pressure difference and peripheral vascular disease: cross-sectional study. (2007) (70)
- Polymorphisms in the CETP gene and association with CETP mass and HDL levels. (2003) (69)
- Tumor necrosis factor α induces a model of preeclampsia in pregnant baboons (Papio hamadryas). (2011) (68)
- Association of torsades de pointes with novel and known single nucleotide polymorphisms in long QT syndrome genes. (2006) (67)
- Identification of IEX-1 as a Biomechanically Controlled Nuclear Factor-&kgr;B Target Gene That Inhibits Cardiomyocyte Hypertrophy (2002) (63)
- Mortality From Thoracic Aortic Diseases and Associations With Cardiovascular Risk Factors (2014) (62)
- Association between single-nucleotide polymorphisms in the endothelial lipase (LIPG) gene and high-density lipoprotein cholesterol levels. (2004) (62)
- Role of a KCNH2 polymorphism (R1047 L) in dofetilide-induced Torsades de Pointes. (2004) (59)
- Male-Specific Region of the Y Chromosome and Cardiovascular Risk: Phylogenetic Analysis and Gene Expression Studies (2013) (58)
- Mutation of a Protease-sensitive Region in Firefly Luciferase Alters Light Emission Properties* (1997) (57)
- Application of pooled genotyping to scan candidate regions for association with HDL cholesterol levels (2004) (56)
- CETP polymorphisms associated with HDL cholesterol may differ from those associated with cardiovascular disease. (2005) (55)
- A Comparison of Single Molecule and Amplification Based Sequencing of Cancer Transcriptomes (2011) (52)
- Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer. (2015) (52)
- Native molecular state of adeno-associated viral vectors revealed by single-molecule sequencing. (2012) (51)
- Improving the performance of true single molecule sequencing for ancient DNA (2012) (48)
- Age at puberty and risk of asthma: A Mendelian randomisation study (2018) (39)
- The majority of total nuclear-encoded non-ribosomal RNA in a human cell is 'dark matter' un-annotated RNA (2011) (37)
- Regulation of apoAI processing by procollagen C-proteinase enhancer-2 and bone morphogenetic protein-1 Published, JLR Papers in Press, February 23, 2009. (2009) (35)
- An Overview of Horizontal Well Completions in the Haynesville Shale (2010) (35)
- An Integrated Approach for Understanding Oil and Gas Reserves Potential in Eagle Ford Shale Formation (2011) (33)
- Cholesteryl Ester Transfer Protein Variants Have Differential Stability but Uniform Inhibition by Torcetrapib* (2005) (33)
- Apixaban Reduces Hospitalizations in Patients With Venous Thromboembolism: An Analysis of the Apixaban for the Initial Management of Pulmonary Embolism and Deep‐Vein Thrombosis as First‐Line Therapy (AMPLIFY) Trial (2015) (32)
- Direct biomechanical induction of endogenous calcineurin inhibitor Down Syndrome Critical Region-1 in cardiac myocytes. (2002) (32)
- SMYD2 promoter DNA methylation is associated with abdominal aortic aneurysm (AAA) and SMYD2 expression in vascular smooth muscle cells (2018) (30)
- High-density genotyping and functional SNP localization in the CETP genes⃞ Published, JLR Papers in Press, November 15, 2006. (2007) (29)
- Single-molecule DNA analysis. (2010) (29)
- Structure-function relations in E. coli 16S RNA (1983) (28)
- Genomic risk prediction of coronary artery disease in nearly 500,000 adults: implications for early screening and primary prevention (2018) (26)
- Single-step capture and sequencing of natural DNA for detection of BRCA1 mutations. (2012) (25)
- Detecting Genotyping Error Using Measures of Degree of Hardy-Weinberg Disequilibrium (2010) (24)
- Genetic Association of the CCR5 Region With Lipid Levels in At-Risk Cardiovascular Patients (2010) (24)
- Mapping and sequencing DNA using nanopores and nanodetectors (2012) (23)
- Improving the visualization, interpretation and analysis of two-sample summary data Mendelian randomization via the Radial plot and Radial regression (2017) (22)
- Human Y Chromosome Exerts Pleiotropic Effects on Susceptibility to Atherosclerosis (2019) (22)
- Transcriptional Modulators Affect in Vivo Protein Binding to the Low Density Lipoprotein Receptor and 3-Hydroxy-3-methylglutaryl Coenzyme A Reductase Promoters (*) (1995) (21)
- Coronary artery disease predisposing haplogroup I of the Y chromosome, aggression and sex steroids--genetic association analysis. (2014) (19)
- Expression of CETP and of splice variants induces the same level of ER stress despite secretion efficiency differences Published, JLR Papers in Press, May 28, 2008. (2008) (19)
- Use of multiple cytometric markers improves discrimination between benign and malignant melanocytic lesions: a study of DNA microdensitometry, karyometry, argyrophilic staining of nucleolar organizer regions and MIB1-Ki67 immunoreactivity (2003) (19)
- An Overview of Horizontal-Well Completions in the Haynesville Shale (2011) (16)
- Bayesian Analysis with Stata (2014) (16)
- One Hundredth Anniversary Volume (2005) (15)
- Orthogonal NGS for High Throughput Clinical Diagnostics (2016) (15)
- Frequency and function of CETP variants among individuals of Asian ancestry. (2009) (14)
- Argyrophilic Staining of Nucleolar Organizer Region Count and Morphometry in Benign and Malignant Melanocytic Lesions (2003) (14)
- RNA sequencing and quantitation using the Helicos Genetic Analysis System. (2011) (14)
- Evidence for Preeclampsia in a Baboon Pregnancy with Twins (1997) (13)
- The Bottom-Line of Horizontal Well Production Decline in the Barnett Shale (2011) (13)
- Highly polymorphic repeat region in the CETP promoter induces unusual DNA structure. (2004) (13)
- Apixaban Reduces Hospitalization In Patients With Venous Thromboembolism: An Analysis Of The AMPLIFY-EXT Trial (2013) (12)
- Cholesterol 7α hydroxylase promoter separated from cyclophilin pseudogene by Alu sequence (1993) (10)
- The tule breakers: The story of the California dredge (1983) (10)
- Epidermal growth factor reduces ischemia-reperfusion injury in rat small intestine (2002) (10)
- Molecular characterization of precise in vivo targeted gene integration in human cells using AAVHSC15 (2020) (10)
- Tumour procurement, DNA extraction, coverage analysis and optimisation of mutation-detection algorithms for human melanoma genomes (2015) (10)
- Minimally invasive radio-guided surgery for recurrent thyroid cancer using iodine-123. (2005) (9)
- Phasing of protein-induced DNA bends in a recombination complex (1989) (9)
- Infra-Renal Aortic Diameter and Cardiovascular Risk: Making Better Use of Abdominal Aortic Aneurysm Screening Outcomes. (2021) (7)
- Novel variants in human and monkey CETP. (2005) (6)
- Data Issues Involved with the Application of Automated Valuation Methods: A Case Study (2009) (5)
- Helicos single-molecule sequencing of bacterial genomes. (2011) (5)
- Chasing a moving target: Detection of mitochondrial heteroplasmy for clinical diagnostics (2017) (4)
- THE KIF6 719ARG ALLELE IS ASSOCIATED WITH INCREASED RISK OF CORONARY HEART DISEASE AMONG MALES IN THE WELCOME TRUST CASE CONTROL CONSORTIUM STUDY OF CORONARY HEART DISEASE (2009) (4)
- Pharmacokinetics, Pharmacodynamics, Tolerability, and Safety of a Novel Sorbitol Dehydrogenase Inhibitor in Healthy Participants (2010) (3)
- APIXABAN REDUCES HOSPITALIZATIONS IN PATIENTS WITH VTE: AN ANALYSIS OF THE AMPLIFY TRIAL (2014) (3)
- The effect of multiple analysers on the biochemical diagnosis of myocardial infarction using a contemporary troponin–I assay (2016) (3)
- Performing Bayesian analysis in Stata using WinBUGS (2007) (3)
- The discovery of CP-230,821, upregulator of the LDL receptor, for the treatment of hypercholesterolemia (1994) (2)
- Primate uteroplacental ischaemia results in proteinuric hypertension and elevated soluble Flt-1 (Sflt-1) (2006) (2)
- Protein fusions of BPI with CETP retain functions inherent to each. (2006) (2)
- Endothelin in Primate Pregnancy and an Experimental Preeclampsia-Like Syndrome (1998) (2)
- SNP Selection and Concordance in Consumer Genetics Testing (2018) (1)
- Natural genetic variation as a tool in understanding the role of CETP in lipid levels and disease (2020) (1)
- The Meta-Analysis of Genetic Studies (2020) (1)
- Low density lipoprotein receptor up-regulation (1999) (1)
- X-Ray Diffraction Analysis of Electrodeposited Beta-Tantalum (1993) (1)
- Grappling with Gilmer: Pre-Hire Arbitration Agreements in the Day Labor Industry (2014) (1)
- Abstract 1177: The majority of total nuclear-encoded non-ribosomal RNA in human normal and tumor cells is “dark matter” unannotated RNA (2011) (1)
- Improving the performance of true single molecule sequencing for ancient DNA (2012) (1)
- The effect of early puberty on asthma in women and men: A Mendelian randomization study (2018) (1)
- STEPHEN BURGESS, SIMON G. THOMPSON. Mendelian Randomization: Methods for Using Genetic Variants in Causal Estimation. Boca Raton: CRC Press (2017) (1)
- mutations BRCA 1 Single-step capture and sequencing of natural DNA for detection of Material (2012) (0)
- Abstract 2320: A Genome-wide Scan Identifies Novel And Known DNA Variants Associated With Component Phenotypes Of Metabolic Syndrome (2007) (0)
- Infra-Renal Aortic Diameter and Cardiovascular Risk: Making Better Use of Abdominal Aortic Aneurysm Screening Outcomes (2021) (0)
- TNF-alpha infusion increases blood pressure, induces proteinuria and increases circulating sflt-1 in pregnant papio hamadryas baboons (2008) (0)
- Recent Advances in Sequencing Technology (2012) (0)
- Abstract 4115: Transcription factor 7-like-2 polymorphisms and risk of Type 2 Diabetes in Indian Asians and Northern Europeans (2006) (0)
- LNA blockers for improved amplification selectivity (2023) (0)
- Helicos Single‐Molecule Sequencing for Accurate Tag‐Based RNA Quantitation (2012) (0)
- Sensitive detection of DNA contamination in tumor samples via microhaplotypes (2020) (0)
- Helical-repeat dependence ofintegrative recombination of bacteriophage A:RoleoftheP1andHIprotein binding sites (1988) (0)
- 10 Acute blood pressure variability response to antihypertensive drugs in an experimental model of preeclampsia (2016) (0)
- Abstract 1665: Development of standardized assay and software systems to deliver concordant results across sequencing platforms (2019) (0)
- Abstract 17979: Global Metabolomic Profiling in Heart Failure With Preserved Ejection Fraction Identifies Markers of Myocardial Dysfunction (2016) (0)
- DNA read count calibration for single-molecule, long-read sequencing (2022) (0)
- 2019 West Coast Aerospace Forum: An Air and Space Force Designed for the Future (2020) (0)
- The Problem of Tax-Exempt Bonds (1942) (0)
- Introduction: A Century of Excellence (2005) (0)
- Anthony J Proust MB BS, FRCPE, FRACP, FRCP (2005) (0)
- 423 ANDROGENS AND AGGRESSIVENESS DO NOT MEDIATE THE EFFECT OF THE Y CHROMOSOME ON CARDIOVASCULAR RISK (2012) (0)
- 68 Acute blood pressure response to antihypertensives during anaesthesia in an experimental model of preeclampsia (2016) (0)
- Abstract 13687: The Association of Trends in Classic Cardiovascular Risk Factors With Global Trends in Abdominal Aortic Aneurysm Mortality (2013) (0)
- HUMAN GENOME EPIDEMIOLOGY (HuGE) REVIEW Systematic Review and Meta-Analysis of the Association between b 2 -Adrenoceptor Polymorphisms and Asthma: A HuGE Review (2005) (0)
- 120 PHYLOGENETIC ANALYSIS OF THE Y CHROMOSOME IN ABDOMINAL AORTIC ANEURYSMS: A META-ANALYSIS OF THREE BRITISH COHORTS (2012) (0)
- Genetic Consortia, Risk Scores and Mendelian Randomization (2013) (0)
- Are the Results of the Study Valid ? How to Use an Article About Genetic Association : B : Correction (2009) (0)
- A View from the Head End. S. Yentis. Published by Tfm publishing Ltd, Harley, UK. Pp. 128; illustrated. Price £14.95. ISBN 1-903378-42-7. (2006) (0)
- Challenges from new technologies and new biomarkers. (2007) (0)
- Improving ancient DNA read mapping against modern reference genomes (2012) (0)
- Abstract 17297: 9p21 CAD Risk Allele is Protective Against Calcific Aortic Stenosis (2014) (0)
- Sequencing Paired Reads using True Single Molecule Sequencing (tSMS)™ Technology (2009) (0)
- 4P-1032 Promoter polymorphisms in the CETP gene and association with HDL cholesterol (2003) (0)
- Meta-analysis of genetic association studies: magic tool or dangerous black box? (2010) (0)
- Mapping Eukaryotic Genomes Using Solid-State, Electronic Nanodetectors (2014) (0)
- SMYD2 promoter DNA methylation is associated with abdominal aortic aneurysm (AAA) and SMYD2 expression in vascular smooth muscle cells (2018) (0)
- 6 Effect of placental ischaemia on angiotensin II type 1 receptor autoantibodies (AT1AA) in a non human primate model of experimental preeclampsia (2016) (0)
- Investigation of pleiotropy in Mendelian randomisation studies with continuous outcome using aggregate genetic data (2013) (0)
- Structural insight into the catalytic mechanism of gluconate 5-dehydrogenase from Streptococcus suis: Crystal structures of the (2009) (0)
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