John Markley
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American biochemist
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Biology
John Markley's Degrees
- Bachelors Biochemistry University of California, Berkeley
- PhD Biochemistry Stanford University
Why Is John Markley Influential?
(Suggest an Edit or Addition)According to Wikipedia, John L. Markley is an American biochemist. Markley focuses on NMR spectroscopy and its biological applications, structure function relationships in proteins, stable-isotope-assisted multinuclear magnetic resonance spectroscopy, processing and analysis of multi-dimensional NMR data; structural genomics and metabolomics.
John Markley's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- The CCPN data model for NMR spectroscopy: Development of a software pipeline (2005) (2962)
- 1H, 13C and 15N chemical shift referencing in biomolecular NMR (1995) (1891)
- NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy (2014) (1264)
- The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data (2006) (1013)
- BioMagResBank (2007) (921)
- The future of NMR-based metabolomics. (2017) (593)
- Metabolite identification via the Madison Metabolomics Consortium Database (2008) (576)
- Recommendations for the presentation of NMR structures of proteins and nucleic acids. (1998) (425)
- Protein Data Bank (PDB): The Single Global Macromolecular Structure Archive. (2017) (421)
- Recommendations for the presentation of NMR structures of proteins and nucleic acids – IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy (1998) (374)
- Sirt3 promotes the urea cycle and fatty acid oxidation during dietary restriction. (2011) (365)
- Protein Data Bank: the single global archive for 3D macromolecular structure data (2018) (347)
- Observation of histidine residues in proteins by nuclear magnetic resonance spectroscopy (1975) (329)
- RECOORD: A recalculated coordinate database of 500+ proteins from the PDB using restraints from the BioMagResBank (2005) (329)
- Recommendations for the presentation of NMR structures of proteins and nucleic acids (IUPAC Recommendations 1998) (1998) (317)
- A relational database for sequence-specific protein NMR data (1991) (312)
- Solution structure of the transmembrane H+-transporting subunit c of the F1F0 ATP synthase. (1998) (278)
- Collagen stability: insights from NMR spectroscopic and hybrid density functional computational investigations of the effect of electronegative substituents on prolyl ring conformations. (2002) (256)
- Method for determining molar concentrations of metabolites in complex solutions from two-dimensional 1H-13C NMR spectra. (2007) (255)
- Spin‐Lattice Relaxation Measurements in Slowly Relaxing Complex Spectra (1971) (235)
- Probabilistic Interaction Network of Evidence Algorithm and its Application to Complete Labeling of Peak Lists from Protein NMR Spectroscopy (2009) (218)
- A Topographic View of Supercooled Liquids and Glass Formation (2005) (185)
- High-Resolution Nuclear Magnetic Resonance Spectra of Selectively Deuterated Staphylococcal Nuclease (1968) (169)
- Microscopic pKa values of Escherichia coli thioredoxin. (1997) (166)
- rNMR: open source software for identifying and quantifying metabolites in NMR spectra (2009) (163)
- Outcome of the First wwPDB Hybrid/Integrative Methods Task Force Workshop. (2015) (163)
- Identification of transcribed sequences in Arabidopsis thaliana by using high-resolution genome tiling arrays. (2005) (158)
- Validation of Structures in the Protein Data Bank (2017) (158)
- Mitochondrial metabolism promotes adaptation to proteotoxic stress (2019) (158)
- Evidence for a molten globule-like transition state in protein folding from determination of activation volumes. (1995) (157)
- Remediation of the protein data bank archive (2007) (146)
- Crystallization and structure determination to 2.5-A resolution of the oxidized [2Fe-2S] ferredoxin isolated from Anabaena 7120. (1991) (144)
- The sigma-1 receptor protects against cellular oxidative stress and activates antioxidant response elements. (2012) (144)
- Recommendations of the wwPDB NMR Validation Task Force. (2013) (141)
- Simultaneous Quantification and Identification of Individual Chemicals in Metabolite Mixtures by Two-Dimensional Extrapolated Time-Zero 1H−13C HSQC (HSQC0) (2011) (134)
- Recommendations for the presentation of NMR structures of proteins and nucleic acids. IUPAC-IUBMB-IUPAB Inter-Union Task Group on the Standardization of Data Bases of Protein and Nucleic Acid Structures Determined by NMR Spectroscopy. (1998) (133)
- Protein energetic conformational analysis from NMR chemical shifts (PECAN) and its use in determining secondary structural elements (2005) (126)
- Cell-free protein production and labeling protocol for NMR-based structural proteomics (2004) (126)
- The CCPN project: an interim report on a data model for the NMR community (2002) (122)
- Solution structure of a late embryogenesis abundant protein (LEA14) from Arabidopsis thaliana, a cellular stress‐related protein (2005) (121)
- Correlation proton magnetic resonance studies at 250 MHz of bovine pancreatic ribonuclease. I. Reinvestigation of the histidine peak assignments. (1975) (118)
- Protein carbon-13 spin systems by a single two-dimensional nuclear magnetic resonance experiment. (1988) (117)
- Effects of amino acid substitutions on the pressure denaturation of staphylococcal nuclease as monitored by fluorescence and nuclear magnetic resonance spectroscopy. (1993) (116)
- BioMagResBank (BMRB) as a partner in the Worldwide Protein Data Bank (wwPDB): new policies affecting biomolecular NMR depositions (2008) (114)
- Solution structure of the thermostable sweet-tasting protein brazzein (1998) (112)
- The Protein Data Bank at 40: reflecting on the past to prepare for the future. (2012) (111)
- PINE-SPARKY: graphical interface for evaluating automated probabilistic peak assignments in protein NMR spectroscopy (2009) (111)
- Solution structure of the N-domain of Wilson disease protein: distinct nucleotide-binding environment and effects of disease mutations. (2006) (110)
- The Protein Data Bank archive as an open data resource (2014) (109)
- Nuclear magnetic resonance studies of helix-coil transitions in polyamino acids. (1967) (108)
- STRUCTURAL BASIS FOR THE PHOTOCONVERSION OF A PHYTOCHROME TO THE ACTIVATED FAR-RED LIGHT-ABSORBING FORM (2009) (105)
- Effects of serpin binding on the target proteinase: global stabilization, localized increased structural flexibility, and conserved hydrogen bonding at the active site. (1997) (104)
- Role of band 3 in regulating metabolic flux of red blood cells (2009) (101)
- Key amino acid residues involved in multi-point binding interactions between brazzein, a sweet protein, and the T1R2-T1R3 human sweet receptor. (2010) (100)
- Auto-induction medium for the production of [U-15N]- and [U-13C, U-15N]-labeled proteins for NMR screening and structure determination. (2005) (99)
- Nuclear magnetic resonance studies of the structure and binding sites of enzymes. I. Histidine residues. (1967) (99)
- OneDep: Unified wwPDB System for Deposition, Biocuration, and Validation of Macromolecular Structures in the PDB Archive. (2017) (98)
- High-resolution iterative frequency identification for NMR as a general strategy for multidimensional data collection. (2005) (98)
- New Bioinformatics Resources For Metabolomics (2006) (97)
- Location and mobility of ubiquinones of different chain lengths in artificial membrane vesicles. (1985) (90)
- [2Fe-2S]-Ferredoxin Binds Directly to Cysteine Desulfurase and Supplies an Electron for Iron–Sulfur Cluster Assembly but Is Displaced by the Scaffold Protein or Bacterial Frataxin (2013) (89)
- Amino acid residues in Anabaena ferredoxin crucial to interaction with ferredoxin-NADP+ reductase: site-directed mutagenesis and laser flash photolysis. (1993) (89)
- Structure of the oxidized long‐chain flavodoxin from anabaena 7120 at 2 å resolution (1992) (88)
- Intrinsically disordered γ-subunit of cGMP phosphodiesterase encodes functionally relevant transient secondary and tertiary structure (2008) (87)
- Structure-function relationships in Anabaena ferredoxin: correlations between X-ray crystal structures, reduction potentials, and rate constants of electron transfer to ferredoxin:NADP+ reductase for site-specific ferredoxin mutants. (1997) (85)
- Project management system for structural and functional proteomics: Sesame (2004) (85)
- Practical introduction to theory and implementation of multinuclear, multidimensional nuclear magnetic resonance experiments. (1994) (85)
- Characterization of the [2Fe-2S] cluster of Escherichia coli transcription factor IscR. (2012) (84)
- Structure and dynamics of the iron-sulfur cluster assembly scaffold protein IscU and its interaction with the cochaperone HscB. (2009) (84)
- High-pressure effects in molecular biophysics and enzymology (1996) (82)
- Sweetness determinant sites of brazzein, a small, heat-stable, sweet-tasting protein. (2000) (82)
- Stable isotope assisted assignment of elemental compositions for metabolomics. (2007) (81)
- Deconvolution of Two-Dimensional NMR Spectra by Fast Maximum Likelihood Reconstruction: Application to Quantitative Metabolomics (2011) (80)
- Databases and Software for NMR-Based Metabolomics. (2012) (80)
- Dynamical Structures of Hsp70 and Hsp70-Hsp40 Complexes. (2016) (79)
- Linear analysis of carbon-13 chemical shift differences and its application to the detection and correction of errors in referencing and spin system identifications (2005) (79)
- Solution structures of spinach acyl carrier protein with decanoate and stearate. (2006) (79)
- BioMagResBank database with sets of experimental NMR constraints corresponding to the structures of over 1400 biomolecules deposited in the Protein Data Bank (2003) (79)
- Addressing the intrinsic disorder bottleneck in structural proteomics (2005) (78)
- Natural J-coupling analysis: interpretation of scalar J-couplings in terms of natural bond orbitals. (2001) (77)
- The future of the Protein Data Bank. (2013) (75)
- PDB-Dev: a Prototype System for Depositing Integrative/Hybrid Structural Models. (2017) (75)
- Hydrogen exchange in unligated and ligated staphylococcal nuclease. (1993) (75)
- Biosynthesis of aromatic compounds: 13C NMR spectroscopy of whole Escherichia coli cells. (1982) (75)
- Molecular structure of the oxidized, recombinant, heterocyst [2Fe-2S] ferredoxin from Anabaena 7120 determined to 1.7-A resolution. (1993) (73)
- Protonation-state dependence of hydrogen bond strengths and exchange rates in a serine protease catalytic triad: bovine chymotrypsinogen A. (1996) (73)
- Changes in hydrogen-bond strengths explain reduction potentials in 10 rubredoxin variants. (2005) (72)
- Regulation of Estrogen Receptor α N-Terminus Conformation and Function by Peptidyl Prolyl Isomerase Pin1 (2011) (72)
- Rotational Spectral Density Functions for Aqueous Sucrose: Experimental Determination Using 13C NMR (1986) (71)
- Metamorphic protein IscU alternates conformations in the course of its role as the scaffold protein for iron–sulfur cluster biosynthesis and delivery (2013) (70)
- Intramolecular deuterium distributions reveal disequilibrium of chloroplast phosphoglucose isomerase (1999) (70)
- Human Mitochondrial Ferredoxin 1 (FDX1) and Ferredoxin 2 (FDX2) Both Bind Cysteine Desulfurase and Donate Electrons for Iron–Sulfur Cluster Biosynthesis (2016) (69)
- Theory and application of the maximum likelihood principle to NMR parameter estimation of multidimensional NMR data (1995) (69)
- Direct NMR detection of the binding of functional ligands to the human sweet receptor, a heterodimeric family 3 GPCR. (2008) (68)
- Efficient production of recombinant brazzein, a small, heat-stable, sweet-tasting protein of plant origin. (2000) (68)
- Zymogen activation in serine proteinases. Proton magnetic resonance pH titration studies of the two histidines of bovine chymotrypsinogen A and chymotrypsin Aalpha. (1978) (68)
- Hydrogen bonding in proteins as studied by amide hydrogen D/H fractionation factors: application to staphylococcal nuclease. (1994) (67)
- Structure-function studies of [2Fe-2S] ferredoxins (1994) (66)
- Biophysical characterization of α-synuclein and its controversial structure (2013) (65)
- Structural Rearrangement of Human Lymphotactin, a C Chemokine, under Physiological Solution Conditions* (2002) (65)
- Fractionation factors and activation energies for exchange of the low barrier hydrogen bonding proton in peptidyl trifluoromethyl ketone complexes of chymotrypsin. (1998) (64)
- Dynamics and metal ion binding in the U6 RNA intramolecular stem-loop as analyzed by NMR. (2005) (64)
- Nuclear magnetic resonance studies of the copper binding sites of blue copper proteins: oxidized, reduced, and apoplastocyanin. (1975) (63)
- NMR Investigations of Clostridium pasteurianum Rubredoxin. Origin of Hyperfine 1H, 2H, 13C, and 15N NMR Chemical Shifts in Iron−Sulfur Proteins As Determined by Comparison of Experimental Data with Hybrid Density Functional Calculations† (1998) (62)
- Critical regions for the sweetness of brazzein 1 (2003) (62)
- OBSERVATION OF HISTIDINE RESIDUES IN PROTEINS BY MEANS OF NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY (1975) (61)
- The charge-relay system of serine proteinases: proton magnetic resonance titration studies of the four histidines of porcine trypsin. (1976) (61)
- Probabilistic Identification of Spin Systems and their Assignments including Coil–Helix Inference as Output (PISTACHIO) (2005) (59)
- Outcome of a workshop on archiving structural models of biological macromolecules. (2006) (59)
- Correlation of carbon-13 and nitrogen-15 chemical shifts in selectively and uniformly labeled proteins by heteronuclear two-dimensional NMR spectroscopy. (1988) (59)
- Protein expression, selective isotopic labeling, and analysis of hyperfine-shifted NMR signals of Anabaena 7120 vegetative [2Fe-2S]ferredoxin. (1995) (59)
- Comparison of cell‐based and cell‐free protocols for producing target proteins from the Arabidopsis thaliana genome for structural studies (2005) (59)
- Utilization of protein intrinsic disorder knowledge in structural proteomics. (2013) (59)
- Outcome of the First wwPDB/CCDC/D3R Ligand Validation Workshop. (2016) (58)
- NMR Investigations of the Rieske Protein from Thermus thermophilus Support a Coupled Proton and Electron Transfer Mechanism (2010) (58)
- More manganese accumulates in maple sun leaves than in shade leaves. (1989) (57)
- Monomeric solution structure of the prototypical 'C' chemokine lymphotactin. (2001) (57)
- Nuclear magnetic resonance studies of trypsin inhibitors. Histidines of virgin and modified soybean trypsin inhibitor (Kunitz). (1973) (57)
- Conserved Lipid and Small-Molecule Modulation of COQ8 Reveals Regulation of the Ancient Kinase-like UbiB Family. (2017) (56)
- Interactions between the human sweet-sensing T1R2-T1R3 receptor and sweeteners detected by saturation transfer difference NMR spectroscopy. (2010) (56)
- Disordered form of the scaffold protein IscU is the substrate for iron-sulfur cluster assembly on cysteine desulfurase (2011) (56)
- Optical, EPR, and 1H NMR spectroscopy of serine-ligated [2Fe-2S] ferredoxins produced by site-directed mutagenesis of cysteine residues in recombinant Anabaena 7120 vegetative ferredoxin. (1994) (56)
- 1H NMR of intact muscle at 11 T (1984) (55)
- Correlation proton magnetic resonance studies at 250 MHz of bovine pancreatic ribonuclease. II. pH and inhibitor-induced conformational transitions affecting histidine-48 and one tyrosine residue of ribonuclease A. (1975) (55)
- Wheat germ cell‐free platform for eukaryotic protein production (2006) (55)
- PONDEROSA-C/S: client–server based software package for automated protein 3D structure determination (2014) (55)
- Pressure denaturation of proteins: evaluation of compressibility effects. (1998) (55)
- Human ferredoxin: overproduction in Escherichia coli, reconstitution in vitro, and spectroscopic studies of iron-sulfur cluster ligand cysteine-to-serine mutants. (1996) (54)
- Solution structure of a cyanobacterial phytochrome GAF domain in the red-light-absorbing ground state. (2008) (54)
- BioMagResBank databases DOCR and FRED containing converted and filtered sets of experimental NMR restraints and coordinates from over 500 protein PDB structures (2005) (54)
- Molecular insights into the recognition of N-terminal histone modifications by the BRPF1 bromodomain. (2014) (53)
- Metabolic Evidence of Diminished Lipid Oxidation in Women With Polycystic Ovary Syndrome. (2014) (52)
- (13)C[(13)C] 2D NMR: a novel strategy for the study of paramagnetic proteins with slow electronic relaxation rates. (2002) (52)
- Caloric Restriction Engages Hepatic RNA Processing Mechanisms in Rhesus Monkeys. (2018) (52)
- Paramagnetic NMR spectroscopy and density functional calculations in the analysis of the geometric and electronic structures of iron-sulfur proteins. (2005) (52)
- Role of IscX in Iron–Sulfur Cluster Biogenesis in Escherichia coli (2014) (51)
- The solution conformation of sucrose: concentration and temperature dependence. (1986) (51)
- Human Mitochondrial Chaperone (mtHSP70) and Cysteine Desulfurase (NFS1) Bind Preferentially to the Disordered Conformation, Whereas Co-chaperone (HSC20) Binds to the Structured Conformation of the Iron-Sulfur Cluster Scaffold Protein (ISCU)* (2013) (50)
- Dynamic Structural Changes Underpin Photoconversion of a Blue/Green Cyanobacteriochrome between Its Dark and Photoactivated States* (2013) (50)
- Coupling between local structure and global stability of a protein: mutants of staphylococcal nuclease. (1990) (50)
- Two-dimensional magnetization exchange spectroscopy of Anabaena 7120 ferredoxin. Nuclear Overhauser effect and electron self-exchange cross peaks from amino acid residues surrounding the 2Fe-2S* cluster. (1991) (49)
- Two-dimensional nuclear magnetic resonance spectroscopy of proteins: an overview. (1989) (48)
- The second finger of Urbs1 is required for iron-mediated repression of sid1 in Ustilago maydis. (1997) (47)
- An aromatic amino acid is required at position 65 in Anabaena ferredoxin for rapid electron transfer to ferredoxin:NADP+ reductase (1993) (46)
- Role of aminotransferases in glutamate metabolism of human erythrocytes (2011) (46)
- Integrative NMR for biomolecular research (2016) (46)
- Hydrogen-1 NMR evidence for three interconverting forms of staphylococcal nuclease: effects of mutations and solution conditions on their distribution. (1989) (46)
- Solution Structure of the Iron−Sulfur Cluster Cochaperone HscB and Its Binding Surface for the Iron−Sulfur Assembly Scaffold Protein IscU†‡ (2008) (46)
- The Worldwide Protein Data Bank (2012) (46)
- Concerted two-dimensional NMR approaches to hydrogen-1, carbon-13, and nitrogen-15 resonance assignments in proteins. (1989) (45)
- Elucidation of amino acid spin systems in proteins and determination of heteronuclear coupling constants by carbon-proton-proton three-dimensional NMR☆ (1991) (45)
- Flavodoxin from Anabaena 7120: uniform nitrogen-15 enrichment and hydrogen-1, nitrogen-15, and phosphorus-31 NMR investigations of the flavin mononucleotide binding site in the reduced and oxidized states. (1988) (44)
- Solution studies of staphylococcal nuclease H124L. 2. 1H, 13C, and 15N chemical shift assignments for the unligated enzyme and analysis of chemical shift changes that accompany formation of the nuclease-thymidine 3',5'-bisphosphate-calcium ternary complex. (1992) (44)
- NMR spectroscopic studies of paramagnetic proteins: iron-sulfur proteins. (1995) (44)
- Efficient and rapid protein expression and purification of small high disulfide containing sweet protein brazzein in E. coli. (2008) (43)
- High-pressure denaturation of staphylococcal nuclease proline-to-glycine substitution mutants. (1996) (43)
- Lipid Binding Ridge on Loops 2 and 3 of the C2A Domain of Synaptotagmin I as Revealed by NMR Spectroscopy* (1998) (43)
- Multinuclear magnetic resonance studies of the 2Fe.2S* ferredoxin from Anabaena species strain PCC 7120. 1. Sequence-specific hydrogen-1 resonance assignments and secondary structure in solution of the oxidized form. (1990) (43)
- Hydrogen bonds in serine proteinases and their complexes with protein proteinase inhibitors. Proton nuclear magnetic resonance studies. (1978) (43)
- Early formation of a beta hairpin during folding of staphylococcal nuclease H124L as detected by pulsed hydrogen exchange (2002) (43)
- Two-dimensional NMR studies of staphylococcal nuclease. 2. Sequence-specific assignments of carbon-13 and nitrogen-15 signals from the nuclease H124L-thymidine 3',5'-bisphosphate-Ca2+ ternary complex. (1990) (43)
- Engineered disulfide bonds in staphylococcal nuclease: effects on the stability and conformation of the folded protein. (1996) (43)
- Two-dimensional NMR strategies for carbon-carbon correlations and sequence-specific assignments in carbon-13 labeled proteins (1988) (42)
- Protein binding chiral discrimination of HPLC stationary phases made with whole, fragmented, and third domain turkey ovomucoid. (1995) (42)
- Cloning, sequencing and transcriptional studies of the genes for cytochrome c-553 and plastocyanin from Anabaena sp. PCC 7120. (1994) (41)
- The "CUPID" method for calculating the continuous probability distribution of rotamers from NMR data (1992) (41)
- Ligand-specific structural changes in the vitamin D receptor in solution. (2011) (41)
- Measurement of absolute concentrations of individual compounds in metabolite mixtures by gradient-selective time-zero 1H-13C HSQC with two concentration references and fast maximum likelihood reconstruction analysis. (2011) (41)
- I-PINE web server: an integrative probabilistic NMR assignment system for proteins (2019) (41)
- Interactions of iron-bound frataxin with ISCU and ferredoxin on the cysteine desulfurase complex leading to Fe-S cluster assembly (2018) (41)
- Iron-sulfur cluster cysteine-to-serine mutants of Anabaena -2Fe-2S- ferredoxin exhibit unexpected redox properties and are competent in electron transfer to ferredoxin:NADP+ reductase. (1997) (40)
- Rieske protein from Thermus thermophilus: 15N NMR titration study demonstrates the role of iron-ligated histidines in the pH dependence of the reduction potential. (2006) (40)
- Worldwide Protein Data Bank biocuration supporting open access to high-quality 3D structural biology data (2018) (40)
- Creation of a nuclear magnetic resonance data repository and literature database. (1989) (40)
- NRG-CING: integrated validation reports of remediated experimental biomolecular NMR data and coordinates in wwPDB (2011) (40)
- Structural/Functional Properties of Human NFU1, an Intermediate [4Fe-4S] Carrier in Human Mitochondrial Iron-Sulfur Cluster Biogenesis. (2016) (40)
- Use of NMR saturation transfer difference spectroscopy to study ligand binding to membrane proteins. (2012) (40)
- NMR Method for Measuring Carbon-13 Isotopic Enrichment of Metabolites in Complex Solutions (2010) (39)
- Specialized Hsp70 Chaperone (HscA) Binds Preferentially to the Disordered Form, whereas J-protein (HscB) Binds Preferentially to the Structured Form of the Iron-Sulfur Cluster Scaffold Protein (IscU)* (2012) (39)
- Structure of the Insect Cytokine Peptide Plasmatocyte-spreading Peptide 1 from Pseudoplusia includens * (1999) (39)
- Two-dimensional NMR studies of staphylococcal nuclease. 1. Sequence-specific assignments of hydrogen-1 signals and solution structure of the nuclease H124L-thymidine 3',5'-bisphosphate-Ca2+ ternary complex. (1990) (39)
- MolProbity for the masses–of data (2015) (39)
- NMR assignments of the four histidines of staphylococcal nuclease in native and denatured states. (1988) (39)
- Correlation proton magnetic resonance studies at 250 MHz of bovine pancreatic ribonuclease. III. Mutual electrostatic interaction between histidine residues 12 and 119. (1975) (38)
- Hydrogen-1 nuclear magnetic resonance investigation of high-potential iron-sulfur proteins from Ectothiorhodospira halophila and Ectothiorhodospira vacuolata: a comparative study of hyperfine-shifted resonances. (1986) (38)
- Solution structure of thioredoxin h1 from Arabidopsis thaliana (2004) (38)
- Macromolecular structure determination by NMR spectroscopy. (2005) (38)
- Structure of Human J-type Co-chaperone HscB Reveals a Tetracysteine Metal-binding Domain* (2008) (38)
- Hydrogen-1, carbon-13, and nitrogen-15 NMR spectroscopy of Anabaena 7120 flavodoxin: assignment of beta-sheet and flavin binding site resonances and analysis of protein-flavin interactions. (1990) (38)
- Nuclear magnetic resonance studies of the structure and binding sites of enzymes. XII. A conformational equilibrium in staphylococcal nuclease involving a histidine residue. (1970) (37)
- Elimination of Cross-Relaxation Effects from Two-Dimensional Chemical-Exchange Spectra of Macromolecules (1990) (37)
- N-Isotope effects on the Raman spectra of Fe2S2 ferredoxin and Rieske ferredoxin: evidence for structural rigidity of metal sites (2003) (37)
- NMR Exchange Format: a unified and open standard for representation of NMR restraint data (2015) (37)
- Three-dimensional structure and determinants of stability of the iron-sulfur cluster scaffold protein IscU from Escherichia coli. (2012) (37)
- Analysis of laboratory-frame and rotating-frame cross-relaxation buildup rates from macromolecules (1989) (36)
- Enzyme-bound intermediates in the conversion of glucose 1-phosphate to glucose 6-phosphate by phosphoglucomutase. Phosphorus NMR studies. (1984) (36)
- NMR determination of pKa values for Asp, Glu, His, and Lys mutants at each variable contiguous enzyme-inhibitor contact position of the turkey ovomucoid third domain. (2003) (36)
- How community has shaped the Protein Data Bank. (2013) (36)
- Tangled web of interactions among proteins involved in iron-sulfur cluster assembly as unraveled by NMR, SAXS, chemical crosslinking, and functional studies. (2015) (36)
- The AUDANA algorithm for automated protein 3D structure determination from NMR NOE data (2016) (36)
- Coupling between trans/cis proline isomerization and protein stability in staphylococcal nuclease (1996) (35)
- Nuclear magnetic resonance studies of the structure and binding sites of enzymes. XIV. Inhibitor binding to staphylococcal nuclease. (1970) (35)
- Structural insight into the self-sacrifice mechanism of enediyne resistance. (2006) (35)
- Strategy for the study of paramagnetic proteins with slow electronic relaxation rates by nmr spectroscopy: application to oxidized human [2Fe-2S] ferredoxin. (2004) (35)
- Detection and Classification of Hyperfine-Shifted 1H, 2H, and 15N Resonances from the Four Cysteines That Ligate Iron in Oxidized and Reduced Clostridium pasteurianum Rubredoxin (1995) (34)
- PONDEROSA, an automated 3D-NOESY peak picking program, enables automated protein structure determination (2011) (34)
- Multinuclear magnetic resonance studies of the 2Fe.2S* ferredoxin from Anabaena species strain PCC 7120. 3. Detection and characterization of hyperfine-shifted nitrogen-15 and hydrogen-1 resonances of the oxidized form. (1990) (34)
- (Diisopropylphosphoryl)serine proteinases. Proton and phosphorus-31 nuclear magnetic resonance-pH titration studies. (1979) (34)
- Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). (2019) (34)
- Evaluation of an algorithm for the automated sequential assignment of protein backbone resonances: A demonstration of the connectivity tracing assignment tools (CONTRAST) software package (1994) (34)
- Unique identifiers for small molecules enable rigorous labeling of their atoms (2017) (33)
- PACSY, a relational database management system for protein structure and chemical shift analysis (2012) (33)
- Cell-free protein synthesis technology in NMR high-throughput structure determination. (2010) (33)
- Protein Structure Refinement Using Carbon- 13 Nuclear Magnetic Resonance Spectroscopic Chemical Shifts and Quantum Chemistry (1995) (33)
- Thermal damage to chloroplast envelope membranes. (1989) (32)
- Interactions between Metal-binding Domains Modulate Intracellular Targeting of Cu(I)-ATPase ATP7B, as Revealed by Nanobody Binding* (2014) (32)
- Correlation of the Sweetness of Variants of the Protein Brazzein with Patterns of Hydrogen Bonds Detected by NMR Spectroscopy* (2003) (32)
- Lack of evidence for a tetrahedral intermediate in the hydrolysis of nitroanilide substrates by serine proteinases. Subzero-temperature stopped-flow experiments. (1981) (31)
- High–throughput automated platform for nuclear magnetic resonance–based structural proteomics (2005) (31)
- Solution structures of staphylococcal nuclease from multidimensional, multinuclear NMR: Nuclease-H124L and its ternary complex with Ca2+ and thymidine-3′,5′-bisphosphate (1997) (31)
- Solution structure of isoform 1 of Roadblock/LC7, a light chain in the dynein complex. (2005) (31)
- Three hydrophobic amino acids in Escherichia coli HscB make the greatest contribution to the stability of the HscB-IscU complex (2011) (30)
- 1H NMR of intact tissues at 11.1 T (1984) (30)
- Spin System Modeling of Nuclear Magnetic Resonance Spectra for Applications in Metabolomics and Small Molecule Screening. (2017) (30)
- The archiving and dissemination of biological structure data. (2016) (30)
- Solution Structure of a Ubiquitin-like Domain from Tubulin-binding Cofactor B* (2004) (30)
- Trans-hydrogen-bond (h2)J(NN) and (h1)J(NH) couplings in the DNA A-T base pair: natural bond orbital analysis. (2002) (30)
- Detection and classification of hyperfine-shifted 1H, 2H, and 15N resonances of the Rieske ferredoxin component of toluene 4-monooxygenase. (1999) (30)
- High-resolution proton nuclear magnetic resonance studies of the nickel(II) derivative of azurin. (1982) (29)
- Monkey electrophysiological and human psychophysical responses to mutants of the sweet protein brazzein: delineating brazzein sweetness. (2003) (29)
- Empirical correlation between protein backbone 15N and 13C secondary chemical shifts and its application to nitrogen chemical shift re-referencing (2009) (29)
- Water permeability of chloroplast envelope membranes (1985) (29)
- The Center for Eukaryotic Structural Genomics (2009) (29)
- Water is allocated differently to chloroplasts in sun and shade leaves. (1988) (29)
- Structural Characterization of Hsp12, the Heat Shock Protein from Saccharomyces cerevisiae, in Aqueous Solution Where It Is Intrinsically Disordered and in Detergent Micelles Where It Is Locally α-Helical* (2011) (29)
- NMR strategy for determining Xaa-Pro peptide bond configurations in proteins: mutants of staphylococcal nuclease with altered configuration at proline-117. (1993) (28)
- The Length of the Bound Fatty Acid Influences the Dynamics of the Acyl Carrier Protein and the Stability of the Thioester Bond† (2009) (28)
- NMR solution structure of ATTp, an Arabidopsis thaliana trypsin inhibitor. (2002) (28)
- The NMR restraints grid at BMRB for 5,266 protein and nucleic acid PDB entries (2009) (28)
- Internal motions of the three hydroxymethyl groups in aqueous sucrose (1987) (28)
- Tentative sequential model for the unfolding and refolding of staphylococcal nuclease at high pH. (1972) (28)
- PINE-SPARKY.2 for automated NMR-based protein structure research (2017) (28)
- Small-scale, semi-automated purification of eukaryotic proteins for structure determination (2007) (27)
- Nucleotide-Dependent Interactions within a Specialized Hsp70/Hsp40 Complex Involved in Fe–S Cluster Biogenesis (2014) (27)
- Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. (2019) (27)
- Metamorphic protein IscU changes conformation by cis-trans isomerizations of two peptidyl-prolyl peptide bonds. (2012) (27)
- Mitochondrial Cysteine Desulfurase and ISD11 Coexpressed in Escherichia coli Yield Complex Containing Acyl Carrier Protein (2017) (27)
- Role for NMR in structural genomics (2004) (27)
- Structure and heme environment of ferrocytochrome c553 from 1H NMR studies. (1982) (27)
- Theoretical Studies of Protium/Deuterium Fractionation Factors and Cooperative Hydrogen Bonding in Peptides (1995) (27)
- Natural abundance 13C NMR spectra of human muscle, normal and diseased (1984) (27)
- Two-dimensional exchange spectroscopy of proteins. (1994) (27)
- 1H NMR spectra of vertebrate [2Fe-2S] ferredoxins. Hyperfine resonances suggest different electron delocalization patterns from plant ferredoxins. (1991) (27)
- Three-dimensional structure of the water-insoluble protein crambin in dodecylphosphocholine micelles and its minimal solvent-exposed surface. (2006) (27)
- NMR-STAR: comprehensive ontology for representing, archiving and exchanging data from nuclear magnetic resonance spectroscopic experiments (2018) (27)
- Hydrogen exchange during cell-free incorporation of deuterated amino acids and an approach to its inhibition (2011) (26)
- Redox-Dependent Magnetic Alignment of Clostridium pasteurianum Rubredoxin: Measurement of Magnetic Susceptibility Anisotropy and Prediction of Pseudocontact Shift Contributions (1999) (26)
- Connectivity of proton and carbon spectra of the blue copper protein, plastocyanin, established by two‐dimensional nuclear magnetic resonance (1983) (26)
- Two‐dimensional correlated spectroscopy (COSY) of intact frog muscle: Spectral pattern characterization and lactate quantitation (1989) (26)
- 14,15N, 13C, 57Fe, and 1,2H Q-band ENDOR study of Fe-S proteins with clusters that have endogenous sulfur ligands. (1992) (26)
- Structure of the putative 32 kDa myrosinase‐binding protein from Arabidopsis (At3g16450.1) determined by SAIL‐NMR (2008) (26)
- Data management in structural genomics: an overview. (2008) (26)
- Two-dimensional NMR studies of Kazal proteinase inhibitors. 1. Sequence-specific assignments and secondary structure of turkey ovomucoid third domain. (1988) (26)
- Observation of the terminal methyl group in fatty acids of the linolenic series by a new 1H NMR pulse sequence providing spectral editing and solvent suppression. Application to excised frog muscle and rat brain. (1986) (26)
- Comparison of the accuracy of protein solution structures derived from conventional and network‐edited NOESY data (1995) (26)
- Heteronuclear (proton, carbon-13) two-dimensional chemical shift correlation NMR spectroscopy of a protein. Ferredoxin from Anabaena variabilis (1982) (26)
- NMR solution structure of type II human cellular retinoic acid binding protein: implications for ligand binding. (1998) (25)
- Nuclear magnetic resonance studies of the structure and binding sites of enzymes. X. Preparation of selectively deuterated analogs of staphylococcal nuclease. (1969) (25)
- Multinuclear magnetic resonance studies of the 2Fe.2S* ferredoxin from Anabaena species strain PCC 7120. 2. Sequence-specific carbon-13 and nitrogen-15 resonance assignments of the oxidized form. (1990) (25)
- Complete elimination of spin diffusion from selected resonances in two-dimensional cross-relaxation spectra of macromolecules by a novel pulse sequence (SNOESY) (1992) (25)
- An automated system designed for large scale NMR data deposition and annotation: application to over 600 assigned chemical shift data entries to the BioMagResBank from the Riken Structural Genomics/Proteomics Initiative internal database (2012) (25)
- Three‐dimensional structure of the AAH26994.1 protein from Mus musculus, a putative eukaryotic Urm1 (2005) (25)
- Broadening the functionality of a J-protein/Hsp70 molecular chaperone system (2017) (25)
- Redox and spectral properties of flavodoxin from Anabaena 7120. (1990) (25)
- Some plant leaves have orientation-dependent EPR and NMR spectra. (1984) (24)
- Detailed analysis of carbon-13 NMR spin systems in a uniformly carbon-13 enriched protein: flavodoxin from Anabaena 7120 (1988) (24)
- Near-Microscopic Magnetic Resonance Imaging of the Brains of Phenylalanine Hydroxylase-Deficient Mice, Normal Littermates, and of Normal BALB/c Mice at 9.4 Tesla (1994) (24)
- Refinement of the NMR solution structure of a protein to remove distortions arising from neglect of internal motion. (1991) (24)
- Solution structure of the toluene 4-monooxygenase effector protein (T4moD). (2001) (24)
- Strategies for eliminating unwanted cross-relaxation and coherence-transfer effects from two-dimensional chemical-exchange spectra (1991) (24)
- Nuclear Magnetic Resonance Studies of Two-Iron-Two-Sulfur Ferredoxins. 4. Interactions with Redox Partners? (1983) (23)
- A theory and a model for interpreting the proton nuclear magnetic resonance spectra of water in plant leaves. (1985) (23)
- Natural-abundance 15N NMR studies of Turkey ovomucoid third domain. Assignment of peptide 15N resonances to the residues at the reactive site region via proton-detected multiple-quantum coherence (1986) (23)
- Solution structure and backbone dynamics of component IV Glycera dibranchiata monomeric hemoglobin-CO. (1998) (23)
- Combined sodium hydroxide and ammonium hydroxide pretreatment of post-biogas digestion dairy manure fiber for cost effective cellulosic bioethanol production (2014) (23)
- Wheat Germ Cell‐Free Expression System for Protein Production (2006) (22)
- NMR relaxation study of internal motions in Staphylococcal nuclease (1988) (22)
- Practical Model Fitting Approaches to the Direct Extraction of NMR Parameters Simultaneously from All Dimensions of Multidimensional NMR Spectra (1998) (22)
- Spline method for correcting baseplane distortions in two-dimensional NMR spectra (1989) (22)
- Analysis of .chi.1 rotamer populations from NMR data by the CUPID method (1992) (22)
- Mechanism of Histone H3K4me3 Recognition by the Plant Homeodomain of Inhibitor of Growth 3* (2016) (22)
- Production in two-liter beverage bottles of proteins for NMR structure determination labeled with either 15N- or 13C-15N (2004) (22)
- Evidence for a strong hydrogen bond in the catalytic dyad of transition-state analogue inhibitor complexes of chymotrypsin from proton-triton NMR isotope shifts. (2002) (22)
- Blue-copper proteins: nuclear magnetic resonance investigations (1978) (22)
- Solution structure of turkey ovomucoid third domain as determined from nuclear magnetic resonance data. (1994) (22)
- Inadequacies of the Point-Dipole Approximation for Describing Electron-Nuclear Interactions in Paramagnetic Proteins: Hybrid Density Functional Calculations and the Analysis of NMR Relaxation of High-Spin Iron(III) Rubredoxin (1998) (22)
- Construction and performance of an NMR tube with a sample cavity formed within magnetic susceptibility-matched glass. (2011) (22)
- Hyperfine-Shifted 13C Resonance Assignments in an Iron−Sulfur Protein with Quantum Chemical Verification: Aliphatic C−H···S 3-Center−4-Electron Interactions (2011) (22)
- Imino proton assignments in the proton nuclear magnetic resonance spectrum of the lambda phage OR3 deoxyribonucleic acid fragment. (1983) (22)
- BioMagResBank (BMRB) as a Resource for Structural Biology. (2020) (22)
- Staphylococcal nuclease active-site amino acids: pH dependence of tyrosines and arginines by 13C NMR and correlation with kinetic studies. (1989) (22)
- Human Cancer Antigen Globo H Is a Cell-Surface Ligand for Human Ribonuclease 1 (2015) (21)
- Structural Basis for the Catalytic Mechanism of Mammalian 25-kDa Thiamine Triphosphatase* (2008) (21)
- AMPLIFICATION OF ONE-BOND 1H/2H ISOTOPE EFFECTS ON 15N CHEMICAL SHIFTS IN CLOSTRIDIUM PASTEURIANUM RUBREDOXIN BY FERMI-CONTACT EFFECTS THROUGH HYDROGE N BONDS (1998) (21)
- Robust, Integrated Computational Control of NMR Experiments to Achieve Optimal Assignment by ADAPT-NMR (2012) (21)
- NMRbot: Python scripts enable high-throughput data collection on current Bruker BioSpin NMR spectrometers (2013) (21)
- X‐ray structure of Arabidopsis At2g06050, 12‐oxophytodienoate reductase isoform 3 (2004) (21)
- Multinuclear, multidimensional NMR studies of Anabaena 7120 heterocyst ferredoxin. Sequence-specific resonance assignments and secondary structure of the oxidized form in solution. (1994) (21)
- Uncovering a membrane-distal conformation of KRAS available to recruit RAF to the plasma membrane (2020) (21)
- The Specialized Hsp70 (HscA) Interdomain Linker Binds to Its Nucleotide-Binding Domain and Stimulates ATP Hydrolysis in Both cis and trans Configurations (2014) (21)
- Quantum chemical calculations on structural models of the catalytic site of chymotrypsin: comparison of calculated results with experimental data from NMR spectroscopy. (2002) (21)
- Brazzein, a small, sweet protein: effects of mutations on its structure, dynamics and functional properties. (2005) (21)
- NMR structure of the mengovirus Leader protein zinc‐finger domain (2008) (21)
- Correlation between hydrogen bond lengths and reduction potentials in Clostridium pasteurianum rubredoxin. (2003) (21)
- Identification of proton NMR signals from the metal ligands in cadmium-substituted plastocyanin via two-dimensional multiple-quantum detection in the absence of explicitly resolved proton-cadmium-113 coupling (1985) (21)
- Realism about PDB (2007) (20)
- Chemical Genomics, Structure Elucidation, and in Vivo Studies of the Marine-Derived Anticlostridial Ecteinamycin. (2017) (20)
- Nearest-neighbor effects on backbone alpha and beta carbon chemical shifts in proteins (2007) (20)
- Structure of the trigonal form of recombinant oxidized flavodoxin from Anabaena 7120 at 1.40 A resolution. (1995) (20)
- Crystallization and preliminary analysis of oxidized, recombinant, heterocyst [2Fe-2S] ferredoxin from Anabaena 7120. (1992) (20)
- Selective quantification by 2D HSQC0 spectroscopy of thiocoraline in an extract from a sponge-derived Verrucosispora sp. (2011) (20)
- Structural basis for RNA recognition by a type II poly(A)-binding protein (2008) (20)
- Estimates of ϕ and ψ torsion angles in proteins from one-, two- and three-bond nuclear spin-spin couplings: Application to staphylococcal nuclease (1994) (20)
- Solution structure of a small protein containing a fluorinated side chain in the core (2006) (19)
- High Pressure Effects on Protein Structure (1998) (19)
- Quantitative evaluation of two-dimensional cross-relaxation NMR spectra of proteins. Interproton distances in Turkey ovomucoid third domain (1990) (19)
- Unique opportunities for NMR methods in structural genomics (2009) (19)
- Applications of Parametrized NMR Spin Systems of Small Molecules. (2018) (19)
- Plant cell wall profiling by fast maximum likelihood reconstruction (FMLR) and region-of-interest (ROI) segmentation of solution-state 2D 1H–13C NMR spectra (2013) (19)
- Phosphorus-31 spin-lattice relaxation in aqueous orthophosphate solutions (1980) (19)
- Thermodynamic criterion for the conformation of P1 residues of substrates and of inhibitors in complexes with serine proteinases. (1999) (19)
- Two-dimensional NMR studies of staphylococcal nuclease: evidence for conformational heterogeneity from hydrogen-1, carbon-13, and nitrogen-15 spin system assignments of the aromatic amino acids in the nuclease H124L-thymidine 3',5'-bisphosphate-Ca2+ ternary complex. (1990) (19)
- Calculations of one-, two- and three-bond nuclear spin-spin couplings in a model peptide and correlations with experimental data (1995) (19)
- Cell-free protein synthesis for functional and structural studies. (2014) (19)
- NMRmix: A Tool for the Optimization of Compound Mixtures in 1D 1H NMR Ligand Affinity Screens (2016) (19)
- Structure of Ala24/Asp61 --> Asp24/Asn61 substituted subunit c of Escherichia coli ATP synthase: implications for the mechanism of proton transport and rotary movement in the F0 complex. (2002) (18)
- Direct cross-relaxation NOESY (D.NOESY). A method for removing spin-diffusion cross peaks from two-dimensional NOE spectra of macromolecules (1991) (18)
- Properties of the His57-Asp102 dyad of rat trypsin D189S in the zymogen, activated enzyme, and alpha1-proteinase inhibitor complexed forms. (1999) (18)
- One-step purification of bacterially expressed recombinant transducin α-subunit and isotopically labeled PDE6 γ-subunit for NMR analysis (2007) (18)
- Increasing rigor in NMR-based metabolomics through validated and open source tools. (2017) (18)
- Turnip yellow mosaic virus and its capsid have thermal stabilities with opposite pH dependence: studies by differential scanning calorimetry and 31P nuclear magnetic resonance spectroscopy. (1985) (18)
- Micelle-induced folding of spinach thylakoid soluble phosphoprotein of 9 kDa and its functional implications. (2006) (18)
- Nuclear magnetic resonance studies of two-iron-two-sulfur ferredoxins. 3. Heteronuclear (carbon-13, proton) two-dimensional NMR spectra, 13C peak assignments, and 13C relaxation measurements (1983) (17)
- Detection and characterization of hyperfine-shifted resonances in the proton nuclear magnetic resonance spectrum of Anabaena 7120 ferredoxin at high magnetic fields. (1990) (17)
- Improvement of 13C15N chemical-shift correlation spectroscopy by implementing time proportional phase incrementation (1989) (17)
- Nuclear magnetic resonance studies of two-iron-two-sulfur ferredoxins. II: Determination of the sequence of Anabaena variabilis ferredoxin II, assignment of aromatic resonances in proton spectra, and effects of chemical modifications (1983) (17)
- Hyperfine-Shifted 13C and 15N NMR Signals from Clostridium pasteurianum Rubredoxin: Extensive Assignments and Quantum Chemical Verification (2009) (17)
- Active site in zymogens. Proton magnetic resonance pH titration curves of histidine-57 in porcine and bovine trypsinogens and in their complexes with bovine pancreatic trypsin inhibitor (Kunitz). (1978) (17)
- Assignment of the histidine proton magnetic resonance peaks of soybean trypsin inhibitor (Kunitz) by a differertial deuterium exchange technique. (1975) (17)
- Simultaneous detection and deconvolution of congested NMR spectra containing three isotopically labeled species. (2008) (17)
- Carbon-13-spin-system-directed strategy for assigning cross peaks in the COSY fingerprint region of a protein (1989) (17)
- Cautionary tail: the presence of an N-terminal tag on dynein light-chain Roadblock/LC7 affects its interaction with a functional partner. (2007) (16)
- Ovine caveolin-1: cDNA cloning, E. coli expression, and association with endothelial nitric oxide synthase (2001) (16)
- Proton nuclear magnetic resonance of human muscle extracts. (1984) (16)
- Magnetization exchange network editing: mathematical principles and experimental demonstration (1995) (16)
- Structural and functional characterization of a novel phosphatase from the Arabidopsis thaliana gene locus At1g05000 (2008) (16)
- Architectural Features of Human Mitochondrial Cysteine Desulfurase Complexes from Crosslinking Mass Spectrometry and Small-Angle X-Ray Scattering. (2018) (16)
- Phosphorus-31 nuclear magnetic resonance study of internal motion in ribonucleic acid of southern bean mosaic virus. (1982) (16)
- Two-dimensional NMR studies of Kazal proteinase inhibitors. 2. Sequence-specific assignments and secondary structure of reactive site modified turkey ovomucoid third domain. (1988) (16)
- Crystal structure of At2g03760, a putative steroid sulfotransferase from Arabidopsis thaliana (2004) (16)
- Elimination of chemical-exchange-mediated spin diffusion from exchange spectra of macromolecules. Exchange-decoupled NOESY (XD-NOESY) (1991) (16)
- Accurate Structure and Dynamics of the Metal-Site of Paramagnetic Metalloproteins from NMR Parameters Using Natural Bond Orbitals (2012) (16)
- NMR characterizations of an amyloidogenic conformational ensemble of the PI3K SH3 domain (2006) (16)
- Two-Dimensional 1H13C chemical-shift correlated spectroscopy of a protein at natural abundance (1984) (16)
- RNA-PAIRS: RNA probabilistic assignment of imino resonance shifts (2012) (16)
- Spinach plastocyanin: comparison of reduced and oxidized forms by natural abundance carbon-13 nuclear magnetic resonance spectroscopy. (1977) (16)
- Carbonyl carbon label selective (CCLS) 1H–15N HSQC experiment for improved detection of backbone 13C–15N cross peaks in larger proteins (2007) (15)
- Improved Measurement of Longer Proton-Proton Distances in Proteins by Relaxation Network Editing (1993) (15)
- Evidence for oxidation-state-dependent conformational changes in human ferredoxin from multinuclear, multidimensional NMR spectroscopy. (1998) (15)
- Nuclear magnetic resonance studies of spherical plant viruses. (1986) (15)
- Relationship between recombinant protein expression and host metabolome as determined by two-dimensional NMR spectroscopy (2017) (15)
- Three-dimensional structure determined for a subunit of human tRNA splicing endonuclease (Sen15) reveals a novel dimeric fold. (2007) (15)
- Compression of NMR data. Application to two-dimensional NMR spectroscopy and imaging (1988) (15)
- Improved frequency resolution in multidimensional constant-time experiments by multidimensional Bayesian analysis (1993) (15)
- ISCU(M108I) and ISCU(D39V) Differ from Wild-Type ISCU in Their Failure To Form Cysteine Desulfurase Complexes Containing Both Frataxin and Ferredoxin (2018) (15)
- Prevention of aggregation after refolding by balanced stabilization-destabilization: production of the Arabidopsis thaliana protein APG8a (At4g21980) for NMR structure determination. (2004) (15)
- Calculation of nuclear spin-spin coupling constants with ab initio molecular orbital wave functions (1993) (15)
- Fast automated protein NMR data collection and assignment by ADAPT-NMR on Bruker spectrometers. (2013) (15)
- Progressive Stereo Locking (PSL): A Residual Dipolar Coupling Based Force Field Method for Determining the Relative Configuration of Natural Products and Other Small Molecules. (2017) (15)
- Probabilistic Approach to Determining Unbiased Random-coil Carbon-13 Chemical Shift Values from the Protein Chemical Shift Database (2006) (15)
- Overexpression and purification of avian ovomucoid third domains in Escherichia coli. (1993) (15)
- Solution structure of YggX: A prokaryotic protein involved in Fe(II) trafficking (2005) (15)
- Conformational Analysis of Molecules with Five-Membered Rings through NMR Determination of the Continuous Probability Distribution (CUPID) for Pseudorotation (1996) (15)
- Carbon-13 and proton nuclear magnetic resonance spectroscopy of plant viruses: evidence for protein-nucleic acid interactions in belladonna mottle virus and detection of polyamines in turnip yellow mosaic virus. (1983) (15)
- NMR chemical shift mapping of the binding site of a protein proteinase inhibitor: changes in the 1H, 13C and 15N NMR chemical shifts of turkey ovomucoid third domain upon binding to bovine chymotrypsin Aα (2001) (15)
- Crystallographic studies of V44 mutants of Clostridium pasteurianum rubredoxin: Effects of side‐chain size on reduction potential (2004) (15)
- HIGH‐RESOLUTION PROTON MAGNETIC RESONANCE STUDIES OF TWO TRYPSIN INHIBITORS: SOYBEAN TRYPSIN INHIBITOR (KUNITZ) AND OVOMUCOID (HEN EGG WHITE) * (1973) (14)
- Mechanism of adenylate kinase. 1H, 13C, and 15N NMR assignments, secondary structures, and substrate binding sites. (1993) (14)
- Properties of conserved amino acid residues in tandem homologous protein domains. Hydrogen-1 nuclear magnetic resonance studies of the histidines of chicken ovomucoid. (1982) (14)
- Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold (2004) (14)
- Active-site serine phosphate and histidine residues of phosphoglucomutase: pH titration studies monitored by 1H and 31P NMR spectroscopy. (1985) (14)
- Automated evaluation of consistency within the PubChem Compound database (2019) (14)
- Multinuclear magnetic resonance and mutagenesis studies of the histidine residues of human mitochondrial ferredoxin. (1995) (14)
- Drafting table and light-box software for multidimensional NMR spectral analysis (PIXI). The personal computer workstation (1990) (14)
- Topological Editing of Cross-Relaxation Networks (1992) (14)
- Dosage Effects of Salt and pH Stresses on Saccharomyces cerevisiae as Monitored via Metabolites by Using Two Dimensional NMR Spectroscopy. (2013) (14)
- Structure‐function relationships of brazzein variants with altered interactions with the human sweet taste receptor (2016) (14)
- Two conformational states of Turkey ovomucoid third domain at low pH: three-dimensional structures, internal dynamics, and interconversion kinetics and thermodynamics. (2003) (13)
- In vivo study of chloroplast volume regulation. (1992) (13)
- Solution structure of human sorting nexin 22 (2007) (13)
- Letter to the Editor: Solution Structure of a Homodimeric Hypothetical Protein, At5g22580, a Structural Genomics Target from Arabidopsis Thaliana (2003) (13)
- The role of aromatic and acidic amino acids in the electron transfer reaction catalyzed by spinach ferredoxin-dependent glutamate synthase. (1998) (13)
- Analysis of the hyperfine-shifted nitrogen-15 resonances of the oxidized form of Anabaena 7120 heterocyst ferredoxin. (1995) (13)
- Preparation of isotopically labeled spinach acyl-acyl carrier protein for NMR structural studies. (2006) (13)
- Nuclear magnetic resonance studies of two-iron-two-sulfur ferredoxins. 5. Hyperfine-shifted peaks in proton and carbon-13 spectra (1983) (13)
- Evidence for pH-induced release of RNA from belladonna mottle virus and the stabilizing effect of polyamines and cations. (1983) (13)
- Protein engineering for the elucidation of the mechanism of electron transfer in redox proteins. (1994) (13)
- Thermal stability of cowpea mosaic virus components: differential scanning calorimetry studies. (1985) (13)
- Structure and Function of the PriC DNA Replication Restart Protein* (2016) (13)
- Multinuclear magnetic resonance studies of metal ion binding sites of phosphoglucomutase. (1985) (13)
- Nuclear magnetic resonance studies of two-iron-two-sulfur ferredoxins. 1. Properties of the histidine residues (1983) (13)
- Changes in the natural abundance 13C NMR spectra of intact frog muscle upon storage and caffeine contracture. (1982) (13)
- NMR-Based Identification of Metabolites in Polar and Non-Polar Extracts of Avian Liver (2017) (13)
- The Complex Energy Landscape of the Protein IscU (2015) (12)
- Carbon-13 NMR method for the detection of correlated hydrogen exchange at adjacent backbone peptide amides and its application to hydrogen exchange in five antiparallel beta strands within the hydrophobic core of Streptomyces subtilisin inhibitor (SSI). (2005) (12)
- Nuclear magnetic resonance studies of the structure and binding sites of enzymes. XI. Characterization of selectively deuterated analogs of staphylococcal nuclease. (1970) (12)
- The spatial distribution of chloroplast water in Acer platanoides sun and shade leaves (1993) (12)
- Detailed analysis of protein structure and function by NMR spectroscopy: survey of resonance assignments. (1984) (12)
- Carbon-13 NMR study of southern bean mosaic virus. (1982) (12)
- Hydrogen-1 nuclear magnetic resonance investigation of Clostridium pasteurianum rubredoxin: previously unobserved signals. (1986) (12)
- One-sample approach to determine the relative orientations of proteins in ternary and binary complexes from residual dipolar coupling measurements. (2009) (12)
- Two‐dimensional spectra of intact tissue: Homonuclear Hartmann‐Hahn spectroscopy provides increased sensitivity and information content as compared to COSY (1990) (12)
- Complete 1H and Partial 13C Resonance Assignments at 37 and 22°C for Brazzein, an Intensely Sweet Protein (1998) (12)
- High-resolution proton magnetic resonance spectroscopy of selectively deuterated enzymes. (1972) (12)
- An NMR structural study of nickel-substituted rubredoxin (2009) (12)
- Solution studies of staphylococcal nuclease H124L. 1. Backbone 1H and 15N resonances and secondary structure of the unligated enzyme as identified by three-dimensional NMR spectroscopy. (1992) (12)
- Solution structure of T4moC, the Rieske ferredoxin component of the toluene 4-monooxygenase complex (2004) (12)
- Templated Collagen "Double Helices" Maintain Their Structure. (2020) (11)
- Temperature‐dependent conformational change affecting Tyr11 and sweetness loops of brazzein (2013) (11)
- Ab Initio Calculations of Protium/Deuterium Fractionation Factors in O2H5+ Clusters (1995) (11)
- Continuous probability distribution (CUPID) analysis of potentials for internal rotations. (1996) (11)
- Solution structure of human myeloid-derived growth factor suggests a conserved function in the endoplasmic reticulum (2019) (11)
- Two-dimensional NMR approaches to the study of protein structure and function. (1984) (11)
- 6-chloro-3-β-d-erythrofuranosyl-l-phenyl- and -l-p-tolylpyrazolo-[3,4-b]quinoxaline (1980) (11)
- Solution structure of a single‐domain thiosulfate sulfurtransferase from Arabidopsis thaliana (2006) (11)
- Letter to the Editor: Hypothetical protein At2g24940.1 from Arabidopsis thaliana has a cytochrome b5 like fold* (2004) (11)
- Safeguarding the integrity of protein archive (2010) (11)
- Novel NMR and MS Approaches to Metabolomics (2012) (11)
- Distinguishing Chloroplast Water From Nonchloroplast Water in One-Dimensional NMR Microscope Images of Plant Leaves (1990) (11)
- ISCU interacts with NFU1, and ISCU[4Fe-4S] transfers its Fe-S cluster to NFU1 leading to the production of holo-NFU1 (2020) (11)
- Calculations of one-, two- and three-bond nuclear spin-spin couplings in a model peptide and correlations with experimental data (1994) (11)
- Simultaneous Basepoint Correction and Signal Recognition in Multidimensional NMR Spectra (1993) (11)
- 1H, 13C, and 15N resonance assignments for a ferrocytochrome c553 heme by multinuclear NMR spectroscopy. (1990) (10)
- Auto-induction medium containing glyphosate for high-level incorporation of unusual aromatic amino acids into proteins. (2010) (10)
- X‐ray structure of Arabidopsis At1g77680, 12‐oxophytodienoate reductase isoform 1 (2005) (10)
- Assignment of the 13C‐nmr spectra of virgin and reactive‐site modified turkey ovomucoid third domain (1990) (10)
- NOE Measurements in the Absence of Spin Diffusion: Application to Methylene Groups in Proteins and Effects on Local Structural Parameters (1995) (10)
- Chemical exchange spectroscopy based on carbon-13 NMR. Applications to enzymology and protein folding (1990) (10)
- Probabilistic validation of protein NMR chemical shift assignments (2016) (10)
- Detailed NMR Analysis of the Heme-Protein Interactions in Component IV Glycera dibranchiata Monomeric Hemoglobin-CO (1998) (10)
- Assignment of 1H, 13C, and 15N signals of oxidized Clostridium pasteurianum rubredoxin (1997) (10)
- Structure of Arabidopsis thaliana At1g77540 protein, a minimal acetyltransferase from the COG2388 family. (2006) (10)
- Applications of nuclear magnetic resonance in biochemistry: An analysis of the aromatic region of the proton magnetic resonance spectrum of staphylococcal nuclease (1968) (10)
- Effects of experimentally achievable improvements in the quality of NMR distance constraints on the accuracy of calculated protein structures. (1996) (10)
- Solution structure of At3g04780.1‐des15, an Arabidopsis thaliana ortholog of the C‐terminal domain of human thioredoxin‐like protein (2005) (10)
- Biological NMR spectroscopy (1997) (10)
- HIFI-C: a robust and fast method for determining NMR couplings from adaptive 3D to 2D projections (2007) (10)
- Expression platforms for producing eukaryotic proteins: a comparison of E. coli cell-based and wheat germ cell-free synthesis, affinity and solubility tags, and cloning strategies (2015) (9)
- Solution structure of Arabidopsis thaliana protein At5g39720.1, a member of the AIG2-like protein family. (2006) (9)
- Solution structure of reactive-site hydrolyzed turkey ovomucoid third domain by nuclear magnetic resonance and distance geometry methods. (1994) (9)
- Probing Protein-Protein Interactions Using Asymmetric Labeling and Carbonyl-Carbon Selective Heteronuclear NMR Spectroscopy (2018) (9)
- Mutations of surface residues in Anabaena vegetative and heterocyst ferredoxin that affect thermodynamic stability as determined by guanidine hydrochloride denaturation (1995) (9)
- An electrochemical, kinetic, and spectroscopic characterization of [2Fe-2S] vegetative and heterocyst ferredoxins from Anabaena 7120 with mutations in the cluster binding loop. (1998) (9)
- Assignment of 1H, 13C, and 15N signals of reduced Clostridium pasteurianum rubredoxin: Oxidation state-dependent changes in chemical shifts and relaxation rates (1997) (9)
- pH-Induced Conformational Change of IscU at Low pH Correlates with Protonation/Deprotonation of Two Conserved Histidine Residues (2014) (9)
- Quantification of cysteinyl sulfhydryl residues in peptides and proteins by ESI-MS or MALDI-MS. (1995) (9)
- 1H, 13C, and 31P nuclear magnetic resonance studies of cowpea mosaic virus: detection and exchange of polyamines and dynamics of the RNA. (1985) (9)
- Structures of proteins of biomedical interest from the Center for Eukaryotic Structural Genomics (2007) (9)
- Zinc‐substituted Desulfovibrio gigas desulforedoxins: Resolving subunit degeneracy with nonsymmetric pseudocontact shifts (2002) (9)
- STAR/CIF macromolecular NMR data dictionaries and data file formats (1996) (9)
- Inorganic Phosphate Compartmentation in the Normal Isolated Canine Brain (1993) (9)
- Differences in the Structure and Dynamics of the Apo- and Palmitate-ligated Forms of Aedes aegypti Sterol Carrier Protein 2 (AeSCP-2)* (2010) (9)
- Two-dimensional concurrent HMQC-COSY as an approach for small molecule chemical shift assignment and compound identification (2011) (9)
- CATALYTIC GROUPS OF SERINE PROTEINASES NMR INVESTIGATIONS (1979) (8)
- One‐ and two‐dimensional nmr spectral analysis of the consequences of single amino acid replacements in proteins (1986) (8)
- Letter to the Editor: Backbone 1H, 15N and 13C Assignments for the Subunit a of the E. Coli ATP Synthase (2004) (8)
- Letter to the Editor: Solution structure of a calmodulin-like calcium-binding domain from Arabidopsis thaliana (2004) (8)
- Probing the sweet determinants of brazzein: wild-type brazzein and a tasteless variant, brazzein-ins(R18a-I18b), exhibit different pH-dependent NMR chemical shifts. (2005) (8)
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- Solution structure of crambin in acetone/water mixed solvent (2006) (0)
- STRUCTURE OF ALA24/ASP61 TO ASP24/ASN61 SUBSTITUTED SUBUNIT C OF ESCHERICHIA COLI ATP SYNTHASE (2002) (0)
- SOLUTION STRUCTURE OF OVOMUCOID (THIRD DOMAIN) FROM DOMESTIC TURKEY (298K, PH 4.1) (NMR, 50 STRUCTURES) (REFINED MODEL USING NETWORK EDITING ANALYSIS) (1996) (0)
- wwPDB OneDep validation services (2017) (0)
- Solution structure of a self-sacrificing resistance protein, CalC from Micromonospora echinospora (2005) (0)
- Recombinant Expression, Isotope Labeling and Purification of the Vitamin D Receptor Binding Peptide. (2011) (0)
- SOLUTION STRUCTURE OF OVOMUCOID (THIRD DOMAIN) FROM DOMESTIC TURKEY (298K, PH 4.1) (NMR, 50 STRUCTURES) (STANDARD NOESY ANALYSIS) (1996) (0)
- Ensemble structures for Staphylococcal nuclease-H124L in ternary complex with Ca2+ and thymidine-3',5'-bisphosphate (2001) (0)
- OneDep: wwPDB system for deposition, biocuration, validation of macromolecular structures (2017) (0)
- Averaged structure for unligated Staphylococcal nuclease-H124L (2001) (0)
- pKa determinations for P1-Ala OMTKY3 (2003) (0)
- NMR solution structures of At1g77540 (2004) (0)
- Structure of 18:0-ACP with docked fatty acid (2006) (0)
- Solution structure of human myeloid-derived growth factor (2019) (0)
- NMR Structure of Ni Substitued Desulfovibrio vulgaris Rubredoxin (2009) (0)
- Solution NMR structure of apo Sterol Carrier Protein - 2 from Aedes aegypti (AeSCP-2) (2010) (0)
- SUBUNIT C OF THE F1FO ATP SYNTHASE OF ESCHERICHIA COLI; NMR, 10 STRUCTURES (1998) (0)
- Corrigendum to “Continuous probability distribution (CUPID) analysis of potentials for internal rotations” [J. Magn. Res. B 111 (1996) 109–126] (2008) (0)
- Solution Structure of apo-IscU(WT) (2011) (0)
- Inhibition of mitochondrial ferredoxin 1 (FDX1) prevents adaptation to proteotoxic stress (2018) (0)
- Studies on 3-Epimeric L-2-Hexulose-phenylosazones. Structure and Anomeric Con- figuration of the 3,6-Anhydroosazone Derivatives Obtained from L-xylo- and L-lyxo- 2-Hexulose-phenylosazone. (1982) (0)
- STRUCTURE OF THE ANABAENA FERREDOXIN D68K MUTANT (2001) (0)
- Solution structure of At3g03773.1 protein from Arabidopsis thaliana (2009) (0)
- H–C NMR spectra (2013) (0)
- Quantification of cysteinyl sulfhydryl residues in peptides and proteins by ESI-MS or MALDI-MS. (1995) (0)
- Solution NMR structure of protein BC066483 (2008) (0)
- Analysis of error propagation from NMR-derived internuclear distances into molecular structure of cyclo-pro-gly. (1998) (0)
- Zinc-substituted desulfovibrio gigas desulforedoxins (2002) (0)
- Mengovirus Leader: Structural Characterization of the Mengovirus Leader Protein Bound to Ran GTPase by Nuclear Magnetic Resonance (2014) (0)
- Role of backbone dynamics and structure in controlling the hydrolysis constants of serine proteinase inhibitors (2003) (0)
- Solution Structure of Ubiquitin like protein from Mus musculus (2004) (0)
- pKa determinations for P6-Asp OMTKY3 (2003) (0)
- Data quality in the PDB archive (2008) (0)
- Faculty Opinions recommendation of Influence of the Hofmeister anions on protein stability as studied by thermal denaturation and chemical shift perturbation. (2007) (0)
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