John Novembre
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John Novembrebiology Degrees
Biology
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Evolutionary Biology
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Systematics
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Genetics
#488
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#560
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Biology
John Novembre's Degrees
- Bachelors Biology University of California, Berkeley
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Why Is John Novembre Influential?
(Suggest an Edit or Addition)According to Wikipedia, John Peter Novembre is a computational biologist at the University of Chicago. He received a MacArthur Fellowship in 2015. Novembre has developed data visualization and analysis techniques to investigate correlations between genomic diversity, geography, and demographic structure.
John Novembre's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Fast model-based estimation of ancestry in unrelated individuals. (2009) (5267)
- Genes mirror geography within Europe (2008) (1365)
- Signals of recent positive selection in a worldwide sample of human populations. (2009) (730)
- An Abundance of Rare Functional Variants in 202 Drug Target Genes Sequenced in 14,002 People (2012) (691)
- Genome-wide SNP and haplotype analyses reveal a rich history underlying dog domestication (2010) (684)
- Interpreting principal component analyses of spatial population genetic variation (2008) (563)
- Genome Sequencing Highlights the Dynamic Early History of Dogs (2014) (482)
- The Role of Geography in Human Adaptation (2009) (406)
- A Simple Genetic Architecture Underlies Morphological Variation in Dogs (2010) (403)
- Visualizing spatial population structure with estimated effective migration surfaces (2014) (353)
- Derived immune and ancestral pigmentation alleles in a 7,000-year-old Mesolithic European (2014) (314)
- A genome-wide perspective on the evolutionary history of enigmatic wolf-like canids. (2011) (298)
- The Population Reference Sample, POPRES: a resource for population, disease, and pharmacological genetics research. (2008) (271)
- Accounting for background nucleotide composition when measuring codon usage bias. (2002) (262)
- Overexpression of the Cytokine BAFF and Autoimmunity Risk (2017) (255)
- The first horse herders and the impact of early Bronze Age steppe expansions into Asia (2018) (243)
- The Geographic Spread of the CCR5 Δ32 HIV-Resistance Allele (2005) (235)
- Inferring genetic ancestry: opportunities, challenges, and implications. (2010) (224)
- SIMCOAL: a general coalescent program for the simulation of molecular data in interconnected populations with arbitrary demography. (2000) (210)
- Spatial patterns of variation due to natural selection in humans (2009) (204)
- Chimpanzee genomic diversity reveals ancient admixture with bonobos (2016) (193)
- Polymorphisms of the HNF1A gene encoding hepatocyte nuclear factor-1 alpha are associated with C-reactive protein. (2008) (193)
- Circuit‐theory applications to connectivity science and conservation (2018) (175)
- Global distribution of genomic diversity underscores rich complex history of continental human populations. (2009) (171)
- Genome sequencing elucidates Sardinian genetic architecture and augments association analyses for lipid and blood inflammatory markers (2015) (168)
- A model-based approach for analysis of spatial structure in genetic data (2012) (146)
- Principal component analysis under population genetic models of range expansion and admixture. (2010) (132)
- The evolutionary history of the CCR5-Δ32 HIV-resistance mutation (2005) (117)
- Recombination rates in admixed individuals identified by ancestry-based inference (2011) (110)
- The Ecology of Emerging Infectious Diseases in Migratory Birds: An Assessment of the Role of Climate Change and Priorities for Future Research (2012) (109)
- Finding haplotype block boundaries by using the minimum-description-length principle. (2003) (102)
- Genetic subdivision and candidate genes under selection in North American grey wolves (2016) (97)
- Ascertainment bias in spatially structured populations: a case study in the eastern fence lizard. (2007) (95)
- Height-reducing variants and selection for short stature in Sardinia (2015) (94)
- Tread Lightly Interpreting Polygenic Tests of Selection (2018) (85)
- Visualizing the geography of genetic variants (2016) (82)
- Characterizing bias in population genetic inferences from low-coverage sequencing data. (2014) (82)
- The genetic prehistory of the Andean highlands 7000 years BP though European contact (2018) (82)
- Demographically-Based Evaluation of Genomic Regions under Selection in Domestic Dogs (2016) (82)
- Genetic variation in the Sorbs of eastern Germany in the context of broader European genetic diversity (2011) (81)
- Genetic history from the Middle Neolithic to present on the Mediterranean island of Sardinia (2020) (80)
- Perspectives on human population structure at the cusp of the sequencing era. (2011) (79)
- Novel statistical methods for integrating genetic and stable isotope data to infer individual‐level migratory connectivity (2013) (77)
- The evolutionary history of the CCR5-Delta32 HIV-resistance mutation. (2005) (73)
- Reconstructing genetic history of Siberian and Northeastern European populations (2015) (67)
- Pritchard, Stephens, and Donnelly on Population Structure (2016) (61)
- Genomic history of the Sardinian population (2018) (57)
- Maximum Likelihood Estimation of Frequencies of Known Haplotypes from Pooled Sequence Data (2012) (56)
- Power Analysis of Artificial Selection Experiments Using Efficient Whole Genome Simulation of Quantitative Traits (2014) (54)
- Parental relatedness through time revealed by runs of homozygosity in ancient DNA (2021) (53)
- Targeted capture and resequencing of 1040 genes reveal environmentally driven functional variation in grey wolves (2016) (51)
- Recent advances in the study of fine-scale population structure in humans. (2016) (51)
- Human population structure and the adaptive response to pathogen-induced selection pressures (2012) (50)
- Getting genetic ancestry right for science and society. (2021) (50)
- The influence of genomic context on mutation patterns in the human genome inferred from rare variants (2013) (50)
- Estimating recent migration and population-size surfaces (2019) (48)
- Estimating Time to the Common Ancestor for a Beneficial Allele (2016) (47)
- Natural Selection and Origin of a Melanistic Allele in North American Gray Wolves (2018) (36)
- forqs: forward-in-time simulation of recombination, quantitative traits and selection (2013) (35)
- Population and individual-specific regulatory variation in Sardinia (2017) (34)
- Detecting past and ongoing natural selection among ethnically Tibetan women at high altitude in Nepal (2017) (34)
- Genetic Landscapes Reveal How Human Genetic Diversity Aligns with Geography (2018) (33)
- De Novo Mutation Rate Estimation in Wolves of Known Pedigree (2019) (33)
- Genes mirror geography within Europe (2008) (29)
- Conflation of Short Identity-by-Descent Segments Bias Their Inferred Length Distribution (2014) (28)
- Deep sequencing of the LRRK2 gene in 14,002 individuals reveals evidence of purifying selection and independent origin of the p.Arg1628Pro mutation in Europe (2012) (27)
- Likelihood-Based Inference in Isolation-By-Distance Models Using the Spatial Distribution of Low-Frequency Alleles (2009) (27)
- Sequenced in 14 , 002 People An Abundance of Rare Functional Variants in 202 Drug Target Genes (2013) (27)
- Population-genetic comparison of the Sorbian isolate population in Germany with the German KORA population using genome-wide SNP arrays (2011) (26)
- Molecular anthropology in the genomic era. (2010) (26)
- A variant-centric perspective on geographic patterns of human allele frequency variation (2020) (24)
- Admixture 1.3 Software Manual (2015) (22)
- Analysis of rare variant population structure in Europeans explains differential stratification of gene-based tests (2014) (22)
- Similar genomic proportions of copy number variation within gray wolves and modern dog breeds inferred from whole genome sequencing (2017) (19)
- Codon Usage Patterns in Cytochrome Oxidase I Across Multiple Insect Orders (2003) (19)
- Spatial Localization of Recent Ancestors for Admixed Individuals (2014) (18)
- Adaptive drool in the gene pool (2007) (17)
- Human Parental Relatedness through Time - Detecting Runs of Homozygosity in Ancient DNA (2020) (17)
- Fast spatial ancestry via flexible allele frequency surfaces (2014) (16)
- A longitudinal cline characterizes the genetic structure of human populations in the Tibetan plateau (2017) (16)
- Using pseudoalignment and base quality to accurately quantify microbial community composition (2017) (16)
- Variations on a Common STRUCTURE: New Algorithms for a Valuable Model (2014) (14)
- Detecting runs of homozygosity from low-coverage ancient DNA (2020) (14)
- Demographic events and evolutionary forces shaping European genetic diversity. (2014) (14)
- Exploring Population Structure with Admixture Models and Principal Component Analysis. (2020) (13)
- A Temporal Perspective on the Interplay of Demography and Selection on Deleterious Variation in Humans (2017) (12)
- Fast and accurate site frequency spectrum estimation from low coverage sequence data (2015) (12)
- Population history of the Sardinian people inferred from whole-genome sequencing (2016) (10)
- The background and legacy of Lewontin's apportionment of human genetic diversity (2022) (9)
- Fast and flexible estimation of effective migration surfaces (2020) (9)
- Ancient genomes from the Himalayas illuminate the genetic history of Tibetans and their Tibeto-Burman speaking neighbors (2022) (9)
- Genome Sequencing Highlights Genes Under Selection and the Dynamic Early History of Dogs (2013) (8)
- Population history from the Neolithic to present on the Mediterranean island of Sardinia: An ancient DNA perspective (2019) (8)
- Response to Cavalli-Sforza Interview [Human Biology 82(3):245–266 (June 2010)] (2010) (8)
- Distinguishing multiple-merger from Kingman coalescence using two-site frequency spectra (2018) (8)
- Human evolution: Ancient DNA steps into the language debate (2015) (7)
- Indigenous Ancestry and Admixture in the Uruguayan Population (2021) (6)
- Inference and visualization of DNA damage patterns using a grade of membership model (2018) (5)
- A tribute to a true conservation innovator, Brad McRae, 1966-2017. (2018) (4)
- Estimating recent migration and population size surfaces (2018) (4)
- Modeling the spatiotemporal spread of beneficial alleles using ancient genomes (2021) (4)
- Public attitudes toward genetic risk scoring in medicine and beyond. (2021) (4)
- Geographic patterns of human allele frequency variation: a variant-centric perspective (2020) (3)
- Properties of 2-locus genealogies and linkage disequilibrium in temporally structured samples (2021) (3)
- Appendix to Paper by Wall and Herbeck (2003) (3)
- A tribute to a true conservation innovator, Brad McRae, 1966-2017. (2018) (2)
- A new era of human population genetics (2012) (2)
- Population and individual effects of non-coding variants inform genetic risk factors (2016) (2)
- Population genetic models for the spatial spread of adaptive variants: A review in light of SARS-CoV-2 evolution (2022) (2)
- Commentary on Sokal, Oden, and Thomson's “A Problem with Synthetic Maps” (1999) (2012) (2)
- Surfing waves of data in San Diego: sophisticated analyses provide a broad view of human genetic diversity (2014) (1)
- A new era of human population genetics (2012) (1)
- Haplotype-based inference of the distribution of fitness effects (2019) (1)
- human populations Signals of recent positive selection in a worldwide sample of Material Supplemental (2009) (1)
- Supplementary material for : The role of geography in human adaptation (2009) (1)
- Expected patterns of local ancestry in a hybrid zone (2018) (1)
- Population and individual-specific regulatory variation in (2017) (1)
- Brad McRae (1966-2017). (2018) (1)
- Nationwide genomic biobank in Mexico unravels demographic history and complex trait architecture from 6,057 individuals (2022) (1)
- Conflations of short IBD blocks can bias inferred length of IBD (2014) (1)
- Surfing waves of data in San Diego: sophisticated analyses provide a broad view of human genetic diversity (2014) (1)
- Addressing the challenges of polygenic scores in human genetic research. (2022) (1)
- M olecular B iology and E volution (2013) (0)
- Title : Genes mirror geography within Europe (0)
- Similar genomic proportions of copy number variation within gray wolves and modern dog breeds inferred from whole genome sequencing (2017) (0)
- Genetic Diversity Demographic Events and Evolutionary Forces Shaping European Subject Collection Human Variation Shaping European Genetic Diversity Demographic Events and Evolutionary Forces (2014) (0)
- S 9 Demographic Analysis Using G-PhoCS (2013) (0)
- and that he did not appreciate the various changes and improvements to our paper that took place in response to his review. (2010) (0)
- history of continental human populations Global distribution of genomic diversity underscores rich complex Material Supplemental (2009) (0)
- Tracking genes and finding mutations: finding genes for complex traits in the domestic dog (Canis familiaris) (2010) (0)
- Corrigendum (2017) (0)
- Karp: Accurate and fast taxonomic classification using pseudoalignment (2017) (0)
- Geographic Spread of an AIDS-Resistant Mutation (2005) (0)
- S4 Quality Filtering (0)
- Genomic history of the Sardinian population (2018) (0)
- A rarefaction approach for measuring population differences in rare and common variation. (2023) (0)
- Selection for lifetime reproductive success among ethnic Tibetans residing at high altitude in Nepal (2019) (0)
- Unelevated hemoglobin concentration and pulse associate with lifetime reproductive success of ethnic Tibetan women at high altitude in Nepal (2019) (0)
- Genetic history from the Middle Neolithic to present on the Mediterranean island of Sardinia (2020) (0)
- Bayenv output file (2015) (0)
- Technical Report: Assessment of the genetic analyses of Rasmussen et al. (2015) (2016) (0)
- Correction: A longitudinal cline characterizes the genetic structure of human populations in the Tibetan plateau (2017) (0)
- Genetics and population analysis Visualizing the geography of genetic variants (2017) (0)
- Decision letter: A community-maintained standard library of population genetic models (2020) (0)
- Intestinal microbiota of Nearctic-Neotropical migratory birds vary more over seasons and years than between host species. (2023) (0)
- Human migration and population structure 2 (2015) (0)
- Author response: A variant-centric perspective on geographic patterns of human allele frequency variation (2020) (0)
- Recent advances in the study of fine-scale population structure in humans (2016) (0)
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