John T Lis
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Engineering Computer Science
John T Lis's Degrees
- PhD Computer Science Stanford University
- Masters Electrical Engineering University of California, Berkeley
- Bachelors Computer Engineering University of California, Berkeley
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(Suggest an Edit or Addition)John T Lis's Published Works
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Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Nascent RNA Sequencing Reveals Widespread Pausing and Divergent Initiation at Human Promoters (2008) (1891)
- Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans (2012) (1009)
- Getting up to speed with transcription elongation by RNA polymerase II (2015) (682)
- Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing (2013) (632)
- The RNA polymerase II molecule at the 5′ end of the uninduced hsp70 gene of D. melanogaster is transcriptionally engaged (1988) (607)
- Defining mechanisms that regulate RNA polymerase II transcription in vivo (2009) (572)
- NAD+-Dependent Modulation of Chromatin Structure and Transcription by Nucleosome Binding Properties of PARP-1 (2004) (548)
- PR-Set7 is a nucleosome-specific methyltransferase that modifies lysine 20 of histone H4 and is associated with silent chromatin. (2002) (548)
- PARP Goes Transcription (2003) (544)
- Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers (2014) (534)
- Breaking barriers to transcription elongation (2006) (520)
- Protein traffic on the heat shock promoter: Parking, stalling, and trucking along (1993) (495)
- Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons (2014) (468)
- The 4D nucleome project (2017) (445)
- Mechanical disruption of individual nucleosomes reveals a reversible multistage release of DNA (2002) (438)
- Germline transformation used to define key features of heat-shock response elements. (1988) (414)
- A Rapid, Extensive, and Transient Transcriptional Response to Estrogen Signaling in Breast Cancer Cells (2011) (411)
- Stable binding of Drosophila heat shock factor to head-to-head and tail-to-tail repeats of a conserved 5 bp recognition unit (1989) (397)
- Transcription Regulation Through Promoter-Proximal Pausing of RNA Polymerase II (2008) (391)
- In vivo transcriptional pausing and cap formation on three Drosophila heat shock genes. (1993) (375)
- Control of transcriptional elongation. (2013) (359)
- CDK12 is a transcription elongation-associated CTD kinase, the metazoan ortholog of yeast Ctk1. (2010) (353)
- High resolution dynamic mapping of histone-DNA interactions in a nucleosome (2008) (352)
- Coordinated Effects of Sequence Variation on DNA Binding, Chromatin Structure, and Transcription (2013) (338)
- Phosphorylation of RNA polymerase II C-terminal domain and transcriptional elongation (1994) (326)
- P-TEFb kinase recruitment and function at heat shock loci. (2000) (326)
- RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells. (1986) (323)
- Rapid, Transcription-Independent Loss of Nucleosomes over a Large Chromatin Domain at Hsp70 Loci (2008) (318)
- Base-pair-resolution genome-wide mapping of active RNA polymerases using precision nuclear run-on (PRO-seq) (2016) (317)
- Regulating RNA polymerase pausing and transcription elongation in embryonic stem cells. (2011) (314)
- Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells. (2013) (303)
- Tracking FACT and the RNA Polymerase II Elongation Complex Through Chromatin in Vivo (2003) (300)
- New heat shock puffs and β=galactosidase activity resulting from transformation of Drosophila with an hsp70-lacZ hybrid gene (1983) (299)
- High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation. (2000) (296)
- Mammalian Heat Shock Response and Mechanisms Underlying Its Genome-wide Transcriptional Regulation. (2016) (285)
- A unified nomenclature for protein subunits of mediator complexes linking transcriptional regulators to RNA polymerase II. (2004) (280)
- The RNA processing exosome is linked to elongating RNA polymerase II in Drosophila (2002) (276)
- Coordination of transcription, RNA processing, and surveillance by P-TEFb kinase on heat shock genes. (2004) (260)
- Transcription Factor and Polymerase Recruitment, Modification, and Movement on dhsp70 In Vivo in the Minutes following Heat Shock (2003) (247)
- Cooperative binding of drosophila heat shock factor to arrays of a conserved 5 bp unit (1991) (242)
- Determinants of heat shock-induced chromosome puffing (1985) (233)
- Detecting protein-DNA interactions in vivo: distribution of RNA polymerase on specific bacterial genes. (1984) (222)
- Fractionation of DNA fragments by polyethylene glycol induced precipitation. (1980) (217)
- Defining the status of RNA polymerase at promoters. (2012) (216)
- Chromatin Landscape Dictates HSF Binding to Target DNA Elements (2010) (215)
- In vivo interactions of RNA polymerase II with genes of Drosophila melanogaster (1985) (199)
- Specific contributions of histone tails and their acetylation to the mechanical stability of nucleosomes. (2005) (193)
- X chromosome dosage compensation via enhanced transcriptional elongation in Drosophila (2010) (192)
- Single molecule analysis of RNA polymerase elongation reveals uniform kinetic behavior (2002) (189)
- Peptidylarginine deiminase 2-catalyzed histone H3 arginine 26 citrullination facilitates estrogen receptor α target gene activation (2012) (189)
- TATA box-binding protein (TBP)-related factor 2 (TRF2), a third member of the TBP family. (1999) (187)
- Dynamics of heat shock factor association with native gene loci in living cells (2006) (185)
- DNA sequence requirements for generating paused polymerase at the start of hsp70. (1992) (184)
- Drosophila Set1 is the major histone H3 lysine 4 trimethyltransferase with role in transcription (2011) (183)
- Topoisomerase I interacts with transcribed regions in Drosophila cells (1986) (182)
- The Drosophila BRM complex facilitates global transcription by RNA polymerase II (2002) (181)
- Divergent transcription: A new feature of active promoters (2009) (179)
- Spatial and temporal pattern of hsp26 expression during normal development. (1986) (179)
- Transcription Properties of a Cell Type–Specific TATA-Binding Protein, TRF (1997) (177)
- Fine structure analyses of the Drosophila and Saccharomyces heat shock factor--heat shock element interactions. (1994) (175)
- Efficient release from promoter-proximal stall sites requires transcript cleavage factor TFIIS. (2005) (174)
- Postinitiation transcriptional control in Drosophila melanogaster (1990) (171)
- Structure and expression of ubiquitin genes of Drosophila melanogaster (1988) (169)
- Mediator, not holoenzyme, is directly recruited to the heat shock promoter by HSF upon heat shock. (2001) (169)
- Overcoming the nucleosome barrier during transcript elongation. (2012) (159)
- Molecular mechanisms driving transcriptional stress responses (2018) (157)
- Rapid changes in Drosophila transcription after an instantaneous heat shock (1993) (154)
- Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation (2013) (150)
- Molecular mechanism of transcription inhibition by peptide antibiotic Microcin J25. (2004) (148)
- Promoter melting and TFIID complexes on Drosophila genes in vivo. (1992) (148)
- DNA melting on yeast RNA polymerase II promoters. (1993) (147)
- Spt6 enhances the elongation rate of RNA polymerase II in vivo (2009) (147)
- P-TEFb Is Critical for the Maturation of RNA Polymerase II into Productive Elongation In Vivo (2007) (145)
- New Technologies Provide Quantum Changes in the Scale, Speed, and Success of SELEX Methods and Aptamer Characterization (2014) (145)
- HSF access to heat shock elements in vivo depends critically on promoter architecture defined by GAGA factor, TFIID, and RNA polymerase II binding sites. (1995) (139)
- A novel arrangement of tandemly repeated genes at a major heat shock site in D. melanogaster (1978) (135)
- Cotranscriptional Folding of a Riboswitch at Nucleotide Resolution (2016) (134)
- The SR protein B52/SRp55 is essential for Drosophila development (1994) (132)
- Little Emperors : Behavioral Impacts of China ’ s One-Child Policy (2013) (129)
- Drosophila Paf1 Modulates Chromatin Structure at Actively Transcribed Genes (2006) (127)
- A germline transformation analysis reveals flexibility in the organization of heat shock consensus elements. (1987) (126)
- Comprehensive Analysis of RNA-Protein Interactions by High Throughput Sequencing-RNA Affinity Profiling (2014) (123)
- Recruitment timing and dynamics of transcription factors at the Hsp70 loci in living cells. (2010) (122)
- Tracking rates of transcription and splicing in vivo (2009) (120)
- Dynamics of potentiation and activation: GAGA factor and its role in heat shock gene regulation. (1997) (119)
- Nascent RNA analyses: tracking transcription and its regulation (2019) (118)
- RNA aptamers as effective protein antagonists in a multicellular organism. (1999) (118)
- Recruiting TATA-binding protein to a promoter: transcriptional activation without an upstream activator (1995) (115)
- RNA polymerase II pauses at the 5' end of the transcriptionally induced Drosophila hsp70 gene (1991) (113)
- Dynamic protein-DNA architecture of a yeast heat shock promoter (1995) (112)
- Intranuclear distribution and local dynamics of RNA polymerase II during transcription activation. (2007) (110)
- Identification of active transcriptional regulatory elements with GRO-seq (2015) (109)
- Transcriptional response to stress is pre-wired by promoter and enhancer architecture (2017) (109)
- Activator-induced spread of poly(ADP-ribose) polymerase promotes nucleosome loss at Hsp70. (2012) (108)
- Transcription factors GAF and HSF act at distinct regulatory steps to modulate stress-induced gene activation (2016) (107)
- Probing SWI/SNF remodeling of the nucleosome by unzipping single DNA molecules (2006) (106)
- Genome-Wide Control of RNA Polymerase II Activity by Cohesin (2013) (106)
- A TRF1:BRF Complex Directs Drosophila RNA Polymerase III Transcription (2000) (104)
- Physical map of two D. melanogaster DNA segments containing sequences coding for the 70,000 dalton heat shock protein (1979) (102)
- Transcriptional activation independent of TFIIH kinase and the RNA polymerase II mediator in vivo (1998) (101)
- Characterization of a Drosophila protein associated with boundaries of transcriptionally active chromatin. (1991) (99)
- Heat shock and developmental regulation of the Drosophila melanogaster hsp83 gene (1989) (97)
- A specific RNA hairpin loop structure binds the RNA recognition motifs of the Drosophila SR protein B52 (1997) (96)
- Cooperative and Competitive Protein Interactions at the Hsp70 Promoter* (1997) (94)
- In vitro selection of RNA molecules that displace cocaine from the membrane-bound nicotinic acetylcholine receptor. (1998) (93)
- Genes for the 70,000 dalton heat shock protein in two cloned D. melanogaster DNA segments (1979) (89)
- Localization of the hsp83 transcript within a 3292 nucleotide sequence from the 63B heat shock locus of D. melanogaster. (1983) (88)
- Distribution of GAGA protein on Drosophila genes in vivo. (1995) (87)
- Drosophila heat shock system as a general model to investigate transcriptional regulation. (2010) (80)
- Extensive polymerase pausing during Drosophila axis patterning enables high-level and pliable transcription. (2013) (80)
- A Cdk9-PP1 switch regulates the elongation-termination transition of RNA polymerase II (2018) (80)
- GAGA factor binding to DNA via a single trinucleotide sequence element. (1998) (79)
- Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme (2018) (79)
- GAGA Factor Maintains Nucleosome-Free Regions and Has a Role in RNA Polymerase II Recruitment to Promoters (2015) (79)
- Selection and elution of aptamers using nanoporous sol-gel arrays with integrated microheaters. (2009) (78)
- Mechanisms by which transcription factors gain access to target sequence elements in chromatin. (2013) (78)
- Short transcripts of the ternary complex provide insight into RNA polymerase II elongational pausing. (1995) (77)
- Transcription through chromatin: understanding a complex FACT. (2004) (77)
- Cdk7 Is Required for Full Activation of Drosophila Heat Shock Genes and RNA Polymerase II Phosphorylation In Vivo (2003) (75)
- Optimal heat-induced expression of the Drosophila hsp26 gene requires a promoter sequence containing (CT)n.(GA)n repeats. (1990) (75)
- The concentration of B52, an essential splicing factor and regulator of splice site choice in vitro, is critical for Drosophila development (1994) (71)
- Minichromosome maintenance helicase paralog MCM9 is dispensible for DNA replication but functions in germ-line stem cells and tumor suppression (2011) (71)
- Imaging Drosophila gene activation and polymerase pausing in vivo (2007) (71)
- The 4 D nucleome project (2017) (68)
- Specific SR protein-dependent splicing substrates identified through genomic SELEX. (2003) (68)
- Multiple, compensatory regulatory elements specify spermatocyte-specific expression of the Drosophila melanogaster hsp26 gene (1990) (66)
- Promoter sequence containing (CT)n.(GA)n repeats is critical for the formation of the DNase I hypersensitive sites in the Drosophila hsp26 gene. (1992) (66)
- Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast (2016) (65)
- Enhancer transcription: what, where, when, and why? (2018) (65)
- Single-molecule nascent RNA sequencing reveals regulatory domain architecture at promoters and enhancers (2018) (64)
- Chromatin conformation remains stable upon extensive transcriptional changes driven by heat shock (2019) (63)
- Nuclear run-on assays: assessing transcription by measuring density of engaged RNA polymerases. (1999) (63)
- 15 Structure and Regulation of Heat Shock Gene Promoters (1994) (62)
- Two closely linked transcription units within the 63B heat shock puff locus of D. melanogaster display strikingly different regulation. (1981) (61)
- Accurate Prediction of Inducible Transcription Factor Binding Intensities In Vivo (2012) (60)
- RNA aptamers directed to discrete functional sites on a single protein structural domain (2007) (58)
- Defining NELF-E RNA Binding in HIV-1 and Promoter-Proximal Pause Regions (2014) (58)
- Promoter activity of Tat at steps subsequent to TATA-binding protein recruitment (1997) (58)
- High-resolution mapping of DNase I-hypersensitive sites of Drosophila heat shock genes in Drosophila melanogaster and Saccharomyces cerevisiae (1984) (57)
- DNA distortion and multimerization: novel functions of the glutamine-rich domain of GAGA factor. (1999) (57)
- RAPID-SELEX for RNA Aptamers (2013) (56)
- The upstream activator CTF/NF1 and RNA polymerase II share a common element involved in transcriptional activation. (1994) (56)
- High-Resolution Mapping of RNA Polymerases Identifies Mechanisms of Sensitivity and Resistance to BET Inhibitors in t(8;21) AML. (2016) (55)
- RNA-DNA differences are generated in human cells within seconds after RNA exits polymerase II. (2014) (53)
- Dynamic evolution of regulatory element ensembles in primate CD4+ T cells (2018) (53)
- A Rapid, Extensive, and Transient Transcriptional Response to Estrogen Signaling in Breast Cancer Cells (2011) (52)
- Sodium Salicylate and Yeast Heat Shock Gene Transcription (*) (1995) (52)
- Phosphorylation of the RNA polymerase II C-terminal domain by TFIIH kinase is not essential for transcription of Saccharomyces cerevisiae genome (2009) (52)
- Pol II docking and pausing at growth and stress genes in C. elegans. (2014) (51)
- The polycomb group mutant esc leads to augmented levels of paused Pol II in the Drosophila embryo. (2011) (50)
- RNA aptamers that functionally interact with green fluorescent protein and its derivatives (2011) (49)
- Human Gene Promoters Are Intrinsically Bidirectional. (2015) (49)
- Cdk9 regulates a promoter-proximal checkpoint to modulate RNA polymerase II elongation rate in fission yeast (2018) (49)
- An RNA aptamer that interferes with the DNA binding of the HSF transcription activator (2006) (46)
- Kinetics of promoter Pol II on Hsp70 reveal stable pausing and key insights into its regulation (2014) (46)
- Cooperative binding of heat shock transcription factor to the Hsp70 promoter in vivo and in vitro. (1994) (44)
- Interactions between subunits of Drosophila Mediator and activator proteins. (2005) (44)
- CBP Regulates Recruitment and Release of Promoter-Proximal RNA Polymerase II. (2017) (43)
- Cloning and characterization of nine heat-shock-induced mRNAs of Drosophila melanogaster. (1981) (43)
- Transcription Factor TFIIH Is Required for Promoter Melting In Vivo (1999) (42)
- Binding of heat shock factor to and transcriptional activation of heat shock genes in Drosophila. (1995) (42)
- A highly conserved domain of RNA polymerase II shares a functional element with acidic activation domains of upstream transcription factors (1994) (41)
- Imaging RNA Polymerase II transcription sites in living cells. (2014) (40)
- Probing TBP interactions in transcription initiation and reinitiation with RNA aptamers that act in distinct modes. (2004) (40)
- Transcription imparts architecture, function, and logic to enhancer units (2019) (38)
- Pre-mRNA Splicing by the EssentialDrosophila Protein B52: Tissue and Target Specificity (2000) (38)
- Targeted H3R26 Deimination Specifically Facilitates Estrogen Receptor Binding by Modifying Nucleosome Structure (2014) (38)
- The Drosophila 7SK snRNP and the essential role of dHEXIM in development (2012) (37)
- Distinct properties and functions of CTCF revealed by a rapidly inducible degron system (2021) (37)
- Direct cloning of DNA that interacts in vivo with a specific protein: application to RNA polymerase II and sites of pausing in Drosophila. (1998) (37)
- PR-Set 7 Is a Nucleosome-Specific Methyltransferase that Modifies Lysine 20 of Histone H 4 and Is Associated with Silent (2002) (36)
- Inhibiting Heat Shock Factor 1 in Human Cancer Cells with a Potent RNA Aptamer (2014) (36)
- Localized heat-shock induction in Drosophila melanogaster. (1988) (35)
- Different upstream transcriptional activators have distinct coactivator requirements. (1999) (35)
- A hypersensitive site in hsp70 chromatin requires adjacent not internal DNA sequence (1985) (33)
- A universal DNA-based protein detection system. (2013) (33)
- Indirect immunofluorescent labeling of Drosophila polytene chromosomes: visualizing protein interactions with chromatin in vivo. (2004) (33)
- An AR-ERG transcriptional signature defined by long-range chromatin interactomes in prostate cancer cells (2019) (32)
- Polymerase processivity and termination on Drosophila heat shock genes. (1993) (32)
- Protein-DNA cross-linking as a means to determine the distribution of proteins on DNA in vivo. (1991) (31)
- Multiplexed Microcolumn-Based Process for Efficient Selection of RNA Aptamers (2013) (29)
- Pioneer-like factor GAF cooperates with PBAP (SWI/SNF) and NURF (ISWI) to regulate transcription (2020) (29)
- Chromatin Architecture of the Pitx2 Locus Requires CTCF- and Pitx2-Dependent Asymmetry that Mirrors Embryonic Gut Laterality. (2015) (28)
- Imaging transcription dynamics at endogenous genes in living Drosophila tissues. (2008) (28)
- Prediction of histone post-translational modification patterns based on nascent transcription data (2022) (27)
- Fcp1 Dephosphorylation of the RNA Polymerase II C-Terminal Domain Is Required for Efficient Transcription of Heat Shock Genes (2012) (27)
- A systematic study of the features critical for designing a high avidity multivalent aptamer. (2013) (27)
- Comparison of Femtosecond Laser and Continuous Wave UV Sources for Protein–Nucleic Acid Crosslinking (2007) (26)
- Kinetics of Xist-induced gene silencing can be predicted from combinations of epigenetic and genomic features (2019) (26)
- Glycogen Synthase Phosphatase Interacts with Heat Shock Factor To Activate CUP1 Gene Transcription inSaccharomyces cerevisiae (1999) (26)
- Nascent RNA sequencing reveals a dynamic global transcriptional response at genes and enhancers to the natural medicinal compound celastrol (2017) (26)
- Density-dependent cooperative non-specific binding in solid-phase SELEX affinity selection (2013) (25)
- HSF recruitment and loss at mostDrosophila heat shock loci is coordinated and depends on proximal promoter sequences (1996) (25)
- Paused Pol II captures enhancer activity and acts as a potent insulator. (2009) (24)
- Electron microscopical analysis of Drosophila polytene chromosomes (1986) (24)
- Evolutionary dynamics and population control during in vitro selection and amplification with multiple targets. (2002) (24)
- A consensus sequence polymer inhibits in vivo expression of heat shock genes (1986) (24)
- Distinct transcriptional responses of RNA polymerases I, II and III to aptamers that bind TBP (2005) (23)
- A 50 year history of technologies that drove discovery in eukaryotic transcription regulation (2019) (22)
- Promoter Cleavage: A TopoIIβ and PARP-1 Collaboration (2006) (21)
- 17 Modular Units of Heat Shock Regulatory Regions: Structure and Function (1990) (21)
- DNA sequence analysis reveals extensive homologies of regions preceding hsp70 and αβ heat shock genes in Drosophila melanogaster (1981) (20)
- DNA sequences flanking the starts of the hsp 70 and αβ heat shock genes are homologous (1981) (20)
- Sex-specific control of Drosophila melanogaster yolk protein 1 gene expression is limited to transcription (1988) (19)
- Genomic organization and transcription of the alpha beta heat shock DNA in Drosophila melanogaster. (1981) (19)
- Quantitative assessment of RNA-protein interactions with high-throughput sequencing–RNA affinity profiling (2015) (19)
- TFIIB aptamers inhibit transcription by perturbing PIC formation at distinct stages (2008) (19)
- An RNA aptamer perturbs heat shock transcription factor activity in Drosophila melanogaster (2011) (18)
- Update for users of the Cornell sequence analysis package (1984) (18)
- Promoter cleavage: a topoIIbeta and PARP-1 collaboration. (2006) (18)
- Stress-Induced Transcriptional Memory Accelerates Promoter-Proximal Pause-Release and Decelerates Termination over Mitotic Divisions (2019) (18)
- Distribution of B52 within a chromosomal locus depends on the level of transcription. (1994) (18)
- High-throughput binding characterization of RNA aptamer selections using a microplate-based multiplex microcolumn device (2014) (17)
- A rapid, sensitive, scalable method for Precision Run-On sequencing (PRO-seq) (2020) (17)
- The isolation and characterization of plaque-forming arabinose transducing bacteriophage λ (1975) (17)
- Protein-DNA cross-linking reveals dramatic variation in RNA polymerase II density on different histone repeats of Drosophila melanogaster (1987) (16)
- A comprehensive SARS-CoV-2–human protein–protein interactome reveals COVID-19 pathobiology and potential host therapeutic targets (2022) (15)
- The Metazoan-Specific Mediator Subunit 26 (Med26) Is Essential for Viability and Is Found at both Active Genes and Pericentric Heterochromatin in Drosophila melanogaster (2014) (14)
- How does Pol II overcome the nucleosome barrier? (2002) (13)
- Use of conditioned media is critical for studies of regulation in response to rapid heat shock (2016) (12)
- Knocking down gene function with an RNA aptamer expressed as part of an intron (2010) (11)
- Single-molecule nascent RNA sequencing identifies regulatory domain architecture at promoters and enhancers (2018) (11)
- Highly Multiplexed RNA Aptamer Selection using a Microplate-based Microcolumn Device (2016) (10)
- RNA polymerase mapping in plants identifies enhancers enriched in causal variants (2018) (9)
- Chemical roadblocking of DNA transcription for nascent RNA display (2020) (9)
- A comparison of experimental assays and analytical methods for genome-wide identification of active enhancers (2022) (9)
- Closely related DNA sequences specify distinct patterns of developmental expression in Drosophila melanogaster (1990) (7)
- CTCF blocks anti-sense transcription initiation at divergent gene promoters (2021) (6)
- Transcriptional Activation of Drosophila Heat Shock Genes (1991) (6)
- The H2BG53D oncohistone directly upregulates ANXA3 transcription and enhances cell migration in pancreatic ductal adenocarcinoma (2020) (6)
- A new player in Pol II pausing (2013) (5)
- DNA sequence analysis reveals extensive homologies of regions preceding hsp70 and alphabeta heat shock genes in Drosophila melanogaster. (1981) (5)
- Chromatin run-on reveals nascent RNAs that differentiate normal and malignant brain tissue (2017) (5)
- Erratum to Signaling pathways differentially affect RNA polymerase II initiation, pausing, and elongation rate in cells [Molecular Cell 50, (2013) 778] (2013) (4)
- Corrigendum: The 4D nucleome project (2017) (4)
- Discovering Aptamers by Cell-SELEX against Human Soluble Growth Factors Ectopically Expressed on Yeast Cell Surface (2014) (4)
- Localization and expression of transformed DNA sequences within heat shock puffs ofDrosophila melanogaster (2005) (4)
- Glucocorticoid receptor collaborates with pioneer factors and AP-1 to execute genome-wide regulation (2021) (4)
- Pioneer factor GAF cooperates with PBAP and NURF to regulate transcription (2020) (4)
- Expression of the major heat shock gene of Drosophila melanogaster in Saccharomyces cerevisiae. (1986) (4)
- Interdependence between histone marks and steps in Pol II transcription (2021) (3)
- A Cdk9-PP1 kinase-phosphatase switch regulates the elongation-termination transition of RNA polymerase II (2017) (3)
- Accurate Identification of Active Transcriptional Regulatory Elements from Global Run-On and Sequencing Data (2014) (3)
- Author response: Genome-wide dynamics of Pol II elongation and its interplay with promoter proximal pausing, chromatin, and exons (2014) (3)
- Identifying Transcription Error-Enriched Genomic Loci Using Nuclear Run-on Circular-Sequencing Coupled with Background Error Modeling. (2020) (2)
- Natural Selection has Shaped Coding and Non-coding Transcription in Primate CD4+ T-cells (2016) (2)
- TheSRProtein B52/SRp55 IsEssential for Drosophila Development (1994) (2)
- Corrigendum: Divergence of a conserved elongation factor and transcription regulation in budding and fission yeast. (2016) (2)
- RNA polymerase mapping in plants identifies intergenic regulatory elements enriched in causal variants (2021) (2)
- CTCF blocks antisense transcription initiation at divergent promoters (2022) (2)
- Improving slide-based assays by stirring: application of liquid-on-liquid mixing to immunofluorescence staining of polytene chromosomes. (2005) (2)
- RapidChanges inDrosophila Transcription after an Instantaneous HeatShock (1993) (1)
- Multiple, Compensatory Regulatory Elements Specify Spermatocyte-Specific Expression of the Drosophila melanogaster hsp26 Gene (1)
- RNA aptamer capture of macromolecular complexes for mass spectrometry analysis (2020) (1)
- An improved 4′-aminomethyltrioxsalen-based nucleic acid crosslinker for biotinylation of double-stranded DNA or RNA (2020) (1)
- Cdk9 regulates a promoter-proximal checkpoint to modulate RNA polymerase II elongation rate in fission yeast (2017) (1)
- Noninduced hsp7O Gene in Drosophila melanogaster Cells (1)
- 34 Heat Shock Factor (1992) (1)
- Resource A Rapid, Extensive, and Transient Transcriptional Response to Estrogen Signaling in Breast Cancer Cells (2011) (1)
- Chromatin run-on reveals the transcriptional etiology of glioblastoma multiforme (2018) (1)
- EmPC-seq: Accurate RNA-sequencing and Bioinformatics Platform to Map RNA Polymerases and Remove Background Error. (2021) (1)
- A comprehensive SARS-CoV-2-human protein-protein interactome network reveals novel pathobiology and host-targeting therapies for COVID-19 (2022) (1)
- Chromatin run-on and sequencing maps the transcriptional regulatory landscape of glioblastoma multiforme (2018) (0)
- Multiplex selection and elution of aptamers using nanoporous sol-gel droplets and a microheater array (2009) (0)
- Femto-Seq: A New Nonlinear Microcopy Approach for Elucidating Chromatin Structure at the Single Gene Level (2019) (0)
- Microsoft Word-EJS_ideSbioRB_FullFormat.docx (2020) (0)
- CBP regulates promoter-proximal RNA polymerase II (2016) (0)
- A Unified Model Describing The Architecture And Creation Of Promoters And Enhancers (2015) (0)
- New Views of Local and Genome-wide Transcription Regulation in Vivo (2009) (0)
- PRO-IP-seq Tracks Molecular Modifications of Engaged Pol II Complexes at Nucleotide Resolution (2023) (0)
- Examining Tale Protein Binding Kinetics and Site Competition using Single Molecule Imaging (2016) (0)
- Promoter melting and TFIID complexes on Drosophila genes in vivo. (2007) (0)
- Multiplex in vitro selection of aptamers using nanoporous sol-gel arrays with integrated microheaters (2009) (0)
- Chemical transcription roadblocking for nascent RNA display (2019) (0)
- Measuring the precise position of transitions in transcription with PRO‐IP‐seq (2022) (0)
- perspectiVes The 4D nucleome project (2017) (0)
- Investigating the Kinetics of HSF Binding Using High Throughput Single Molecule Imaging (2015) (0)
- SELEX-on-a chip of yeast TBP much enhanced conventional SELEX efficiency by reducing the number of cycles and improving binding affinity (2009) (0)
- Abstract LB-97: Optimizing SELEX with high-throughput sequencing (2012) (0)
- Use of conditioned media is critical for studies of regulation in response to rapid heat shock (2016) (0)
- Visualizing Specific Genomic Loci using Fluorescently Labeled Transcription Activator-Like Effectors (2016) (0)
- The Drosophila BEAF insulator protein interacts with the polybromo subunit of the PBAP chromatin remodeling complex (2022) (0)
- A comprehensive SARS-CoV-2-human protein-protein interactome network identifies pathobiology and host-targeting therapies for COVID-19 (2022) (0)
- An Improved 4’-Aminomethyltroxsalen-Based DNA Crosslinker for Biotinylation of DNA (2020) (0)
- The Isolation and Characterization of Plaque-forming Arabinose Transducing Bacteriophage 1 (1974) (0)
- Psi promotes Drosophila wing growth via direct transcriptional activation of cell cycle targets and repression of growth inhibitors. (2023) (0)
- High-Resolution Mapping of RNA Polymerases Identifies Mechanisms of Sensitivity and Resistance to BET Inhibitors in t ( 8 ; 21 ) AML Graphical (0)
- A 50 year history of technologies that drove discovery in eukaryotic transcription regulation (2019) (0)
- DNA sequence analysis reveals extensive homologies of regions preceding hsp 7 O and af 8 heat shock genes in Drosophila melanogaster ( transcription / genetic regulation / promoters / transposition / evolution ) (0)
- Evolution of promoter-proximal pausing enabled a new layer of transcription control (2023) (0)
- RNA Polymerase II Pauses atthe5'EndoftheTranscriptionall y Induced Drosophila hsp7OGene (1991) (0)
- RNA-DNA Differences Are Generated in Human Cells within Seconds After RNA Exits Pol II (2016) (0)
- Cis-regulatory control of transcriptional timing and noise in response to estrogen (2023) (0)
- AnAR-ERG transcriptional signature defined by long- range chromatin interactomes in prostate cancer cells (2019) (0)
- Psi promotes Drosophila wing growth through transcriptional repression of key developmental networks (2020) (0)
- NpgRJ_Nsmb_1102 549..554 (2017) (0)
- Decision letter: Live-cell single particle imaging reveals the role of RNA polymerase II in histone H2A.Z eviction (2020) (0)
- Rapid Changes in Drosophila Transcription after an Instantaneous Heat Shock (2003) (0)
- Transcriptional response to stress is pre-wired by promoter and enhancer architecture (2017) (0)
- SELEX-on-a-chip: Microchip integration of the sol-gel derived affinity column for monitoring RNA-protein interaction (2008) (0)
- Dynamic evolution of regulatory element ensembles in primate CD4+ T cells (2018) (0)
- Nascent RNA analyses: tracking transcription and its regulation (2019) (0)
- Transcription imparts architecture, function and logic to enhancer units (2020) (0)
- High-Resolution Locus-Specific Mapping of Chromatin Contacts using Two-Photon Photoactivated DNA Cross-Linking (2018) (0)
- Investigating the Kinetics and Specificity of Transcription Activator-Like Effector Binding using High Throughput Single Molecule Imaging (2016) (0)
- Massively‐Parallel Sequencing Of Nascent RNA Sequencing Reveals Widespread Pausing And Divergent Initiation From Mammalian Promoters (2009) (0)
- Investigating the Effect of PARP Mediated Compartments on Transcription Dynamics (2022) (0)
- Molecular mechanisms driving transcriptional stress responses (2018) (0)
- Systematic comparison of experimental assays and analytical pipelines for identification of active enhancers genome-wide (2021) (0)
- Author response: Condensin controls recruitment of RNA polymerase II to achieve nematode X-chromosome dosage compensation (2013) (0)
- A 2 Pol II TATA 1 . Opening Chromatin B RNA A 1 TATA 2 (1999) (0)
- Super-Resolution Imaging of GFP Expressing Cells using Dye Labeled GFP Aptamers (2014) (0)
- A Cdk9–PP1 switch regulates the elongation–termination transition of RNA polymerase II (2018) (0)
- Development of temperature-sensitive mutants of the Drosophila melanogaster P-TEFb (Cyclin T/CDK9) heterodimer using yeast two-hybrid screening. (2013) (0)
- Profile of John T. Lis. Interviewed by Kristie Nybo. (2012) (0)
- A Unified Nomenclature for Protein Subunits of Mediator Complexes Conserved from Fungi to Humans: Med6/pmc5/arc/ Drip33/trap32, Med7/arc/drip/trap34/crsp33, Linking Transcriptional Regulators to Rna Polymerase Ii Arc/crsp/drip150/trap170, Soh1/trap18 (note That Soh1 Has Not Been yet Identified in Pu (0)
- Abstract IA05: Genome-wide views into the mechanisms of transcription regulation (2016) (0)
- Table of Contents (1986) (0)
- Dynamics of potentiation and activation: GAGA factor and its role in heat shock gene regulation (1997) (0)
- MULTIPLEXED MICROCOLUMN DEVICES AND PROCESSES FOR SELECTION OF NUCLEIC ACID APTAMERS (2013) (0)
- SELEX-on-a-Chip: Microchip Integration of the Sol-Gel Derived Affinity Column for Monitoring Pesticides Residue (2013) (0)
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What Schools Are Affiliated With John T Lis?
John T Lis is affiliated with the following schools:
