Jonathan Marchini | Academic Influence

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Jonathan Marchini

Mathematics

#6482

World Rank

#8964

Historical Rank

Statistics

#632

World Rank

#716

Historical Rank

mathematics Degrees

Jonathan Marchini

Biology

#8944

World Rank

#12090

Historical Rank

Computational Biology

#221

World Rank

#222

Historical Rank

biology Degrees

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Mathematics
Biology

Jonathan Marchini's Degrees

PhD Statistical Genetics University of Oxford
Masters Statistics University of Oxford
Bachelors Mathematics University of Oxford

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Why Is Jonathan Marchini Influential?

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According to Wikipedia, Jonathan Laurence Marchini is a Bayesian statistician and professor of statistical genomics in the Department of Statistics at the University of Oxford, a tutorial fellow in statistics at Somerville College, Oxford and a co-founder and director of Gensci Ltd. He co-leads the Haplotype Reference Consortium.

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Jonathan Marchini's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

A global reference for human genetic variation (2015) (11857)
Genome-wide association study of 14,000 cases of seven common diseases and 3,000 shared controls (2007) (9208)
A second generation human haplotype map of over 3.1 million SNPs (2007) (4567)
A Flexible and Accurate Genotype Imputation Method for the Next Generation of Genome-Wide Association Studies (2009) (3816)
The UK Biobank resource with deep phenotyping and genomic data (2018) (3653)
A new multipoint method for genome-wide association studies by imputation of genotypes (2007) (2639)
Genome-wide association defines more than 30 distinct susceptibility loci for Crohn's disease (2008) (2621)
Replication of Genome-Wide Association Signals in UK Samples Reveals Risk Loci for Type 2 Diabetes (2007) (2245)
Meta-analysis of genome-wide association data and large-scale replication identifies additional susceptibility loci for type 2 diabetes (2008) (1882)
Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression (2018) (1816)
Fast and accurate genotype imputation in genome-wide association studies through pre-phasing (2012) (1632)
A linear complexity phasing method for thousands of genomes (2011) (1620)
Genotype imputation for genome-wide association studies (2010) (1545)
Association scan of 14,500 nonsynonymous SNPs in four diseases identifies autoimmunity variants (2007) (1421)
Common variants near MC4R are associated with fat mass, weight and risk of obesity (2008) (1307)
Improved whole-chromosome phasing for disease and population genetic studies (2013) (1201)
Identification of loci associated with schizophrenia by genome-wide association and follow-up (2008) (1069)
Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps (2018) (1028)
Genome-wide strategies for detecting multiple loci that influence complex diseases (2005) (962)
Genotype Imputation with Thousands of Genomes (2011) (954)
The UK10K project identifies rare variants in health and disease (2015) (926)
The effects of human population structure on large genetic association studies (2004) (886)
The Allelic Landscape of Human Blood Cell Trait Variation and Links to Common Complex Disease (2016) (885)
A high-resolution HLA and SNP haplotype map for disease association studies in the extended human MHC (2006) (764)
Sparse whole genome sequencing identifies two loci for major depressive disorder (2015) (717)
Genome-wide genetic data on ~500,000 UK Biobank participants (2017) (630)
Meta-analysis and imputation refines the association of 15q25 with smoking quantity (2010) (605)
Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls (2010) (600)
Designing Genome-Wide Association Studies: Sample Size, Power, Imputation, and the Choice of Genotyping Chip (2009) (594)
A General Approach for Haplotype Phasing across the Full Spectrum of Relatedness (2014) (482)
Genome-wide association study of copy number variation in 16,000 cases of eight common diseases and 3,000 shared controls (2010) (465)
Genome-wide association studies of brain imaging phenotypes in UK Biobank (2018) (402)
Genome-wide association and large scale follow-up identifies 16 new loci influencing lung function (2011) (401)
Genome-wide and fine-resolution association analysis of malaria in West Africa (2009) (394)
Integrating sequence and array data to create an improved 1000 Genomes Project haplotype reference panel (2014) (348)
A comparison of phasing algorithms for trios and unrelated individuals. (2006) (337)
Human polymorphism at microRNAs and microRNA target sites. (2013) (330)
Haplotype estimation using sequencing reads. (2013) (329)
Novel insights into the genetics of smoking behaviour, lung function, and chronic obstructive pulmonary disease (UK BiLEVE): a genetic association study in UK Biobank (2015) (326)
Improved imputation of low-frequency and rare variants using the UK10K haplotype reference panel (2015) (296)
Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes (2017) (294)
Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure (2020) (288)
HAPGEN2: simulation of multiple disease SNPs (2011) (287)
The OncoArray Consortium: A Network for Understanding the Genetic Architecture of Common Cancers (2016) (267)
Exome sequencing and characterization of 49,960 individuals in the UK Biobank (2020) (244)
Two-Stage Two-Locus Models in Genome-Wide Association (2006) (244)
Accurate, scalable and integrative haplotype estimation (2019) (230)
Computationally efficient whole-genome regression for quantitative and binary traits (2020) (226)
Genome-wide detection and characterization of positive selection in human populations (2007) (217)
Multiple Common Susceptibility Variants near BMP Pathway Loci GREM1, BMP4, and BMP2 Explain Part of the Missing Heritability of Colorectal Cancer (2011) (204)
The origin, evolution, and functional impact of short insertion–deletion variants identified in 179 human genomes (2013) (201)
Molecular Signatures of Major Depression (2015) (198)
A robust statistical method for case-control association testing with copy number variation (2008) (189)
Haplotype estimation for biobank scale datasets (2016) (178)
Genome-Wide Joint Meta-Analysis of SNP and SNP-by-Smoking Interaction Identifies Novel Loci for Pulmonary Function (2012) (167)
Exome sequencing and analysis of 454,787 UK Biobank participants (2021) (166)
Genome-wide meta-analysis of 241,258 adults accounting for smoking behaviour identifies novel loci for obesity traits (2017) (149)
Effect of five genetic variants associated with lung function on the risk of chronic obstructive lung disease, and their joint effects on lung function. (2011) (144)
Tensor decomposition for multi-tissue gene expression experiments (2016) (139)
Corrigendum: TCTEX1D2 mutations underlie Jeune asphyxiating thoracic dystrophy with impaired retrograde intraflagellar transport (2016) (131)
Whole exome sequencing and characterization of coding variation in 49,960 individuals in the UK Biobank (2019) (126)
A new statistical approach to detecting significant activation in functional MRI (2000) (113)
Sixteen new lung function signals identified through 1000 Genomes Project reference panel imputation (2015) (110)
Handedness, language areas and neuropsychiatric diseases: insights from brain imaging and genetics (2019) (100)
The Genetics of the Mood Disorder Spectrum: Genome-wide Association Analyses of More Than 185,000 Cases and 439,000 Controls (2018) (99)
Does Childhood Trauma Moderate Polygenic Risk for Depression? A Meta-analysis of 5765 Subjects From the Psychiatric Genomics Consortium (2017) (87)
Sequencing of 640,000 exomes identifies GPR75 variants associated with protection from obesity (2021) (85)
A multiple phenotype imputation method for genetic studies (2016) (84)
Increased genetic vulnerability to smoking at CHRNA5 in early-onset smokers. (2012) (81)
Unified single-cell analysis of testis gene regulation and pathology in five mouse strains (2019) (77)
Analysis of 10 independent samples provides evidence for association between schizophrenia and a SNP flanking fibroblast growth factor receptor 2 (2009) (75)
Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank (2019) (72)
Comparing methods of analyzing fMRI statistical parametric maps (2004) (70)
A rare variant in APOC3 is associated with plasma triglyceride and VLDL levels in Europeans (2014) (69)
Cystatin C and Cardiovascular Disease (2016) (68)
A New Statistical Approach to Detecting Significant Activation in Functional MRI (2000) (64)
Comparative performances of machine learning methods for classifying Crohn Disease patients using genome-wide genotyping data (2019) (61)
A Comparison of Ten Polygenic Score Methods for Psychiatric Disorders Applied Across Multiple Cohorts (2020) (60)
Intra-individual variation in resting metabolic rate during the menstrual cycle (2003) (59)
Pan-ancestry exome-wide association analyses of COVID-19 outcomes in 586,157 individuals (2021) (59)
An imputation platform to enhance integration of rice genetic resources (2018) (56)
Fine-mapping of an expanded set of type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps (2018) (55)
Multiway Admixture Deconvolution Using Phased or Unphased Ancestral Panels (2013) (54)
Genotype imputation using the Positional Burrows Wheeler Transform (2019) (53)
The spatial correspondence and genetic influence of interhemispheric connectivity with white matter microstructure (2018) (50)
Genotype calling and phasing using next-generation sequencing reads and a haplotype scaffold (2013) (49)
BGEN: a binary file format for imputed genotype and haplotype data (2018) (48)
Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depressive disorder (2017) (47)
Genome-wide association analysis implicates the involvement of eight loci with response to tocilizumab for the treatment of rheumatoid arthritis (2012) (44)
Rare Variant Analysis of Human and Rodent Obesity Genes in Individuals with Severe Childhood Obesity (2017) (43)
A new multipoint method for genome-wide association studies via imputation of genotypes : Supplementary Methods (2007) (43)
Comparing algorithms for genotype imputation. (2008) (43)
A common biological basis of obesity and nicotine addiction (2013) (41)
Common Genetic Variation Indicates Separate Causes for Periventricular and Deep White Matter Hyperintensities (2020) (41)
Genome-wide analysis provides genetic evidence that ACE2 influences COVID-19 risk and yields risk scores associated with severe disease (2022) (40)
Association of polygenic score for major depression with response to lithium in patients with bipolar disorder (2020) (37)
11,670 whole-genome sequences representative of the Han Chinese population from the CONVERGE project (2017) (36)
On Bias in the Estimation of Autocorrelations for fMRI Voxel Time-Series Analysis (2003) (35)
The genetic basis of human brain structure and function: 1,262 genome-wide associations found from 3,144 GWAS of multimodal brain imaging phenotypes from 9,707 UK Biobank participants (2017) (34)
Distinct Loci in the CHRNA5/CHRNA3/CHRNB4 Gene Cluster Are Associated With Onset of Regular Smoking (2013) (33)
Steroid receptor coactivator-1 modulates the function of Pomc neurons and energy homeostasis (2019) (31)
Multicohort analysis of the maternal age effect on recombination (2015) (28)
The effect of genome-wide association scan quality control on imputation outcome for common variants (2011) (28)
False discovery rate control in genome-wide association studies with population structure (2021) (24)
A Bayesian Method for Detecting and Characterizing Allelic Heterogeneity and Boosting Signals in Genome-Wide Association Studies (2009) (22)
Narrow-sense heritability estimation of complex traits using identity-by-descent information (2017) (22)
Low-frequency variation in TP53 has large effects on head circumference and intracranial volume (2018) (22)
Discussion on the meeting on ‘Statistical modelling and analysis of genetic data’ (2002) (21)
Genome-wide analysis in 756,646 individuals provides first genetic evidence that ACE2 expression influences COVID-19 risk and yields genetic risk scores predictive of severe disease (2020) (20)
Modeling interactions with known risk loci—a Bayesian model averaging approach (2011) (20)
Classical Human Leukocyte Antigen Alleles and C4 Haplotypes Are Not Significantly Associated With Depression (2020) (20)
Inferring Gene-by-Environment Interactions with a Bayesian Whole-Genome Regression Model (2020) (19)
Association of Whole-Genome and NETRIN1 Signaling Pathway–Derived Polygenic Risk Scores for Major Depressive Disorder and White Matter Microstructure in the UK Biobank (2019) (18)
Bayesian hierarchical mixture modeling to assign copy number from a targeted CNV array (2011) (17)
Phasing for medical sequencing using rare variants and large haplotype reference panels (2016) (15)
Genetic association analysis of SARS-CoV-2 infection in 455,838 UK Biobank participants (2020) (15)
Genome-wide association studies of brain structure and function in the UK Biobank (2017) (14)
Unified single-cell analysis of testis gene regulation and pathology in 5 mouse strains (2018) (13)
Consortium, G.P A map of human genome variation from population-scale sequencing. Nature 467, 1061-1073 (2010) (13)
Haplotype Estimation and Genotype Imputation (2019) (12)
UK Biobank Phasing and Imputation Documentation Version 1 . 2 13 November 2015 documentation author (2015) (12)
A model-based approach to capture genetic variation for future association studies. (2006) (11)
A catalog of associations between rare coding variants and COVID-19 outcomes (2020) (10)
Network inference in matrix-variate Gaussian models with non-independent noise (2013) (10)
Common and rare variant associations with clonal haematopoiesis phenotypes (2022) (10)
Exome sequencing of 628,388 individuals identifies common and rare variant associations with clonal hematopoiesis phenotypes (2022) (9)
Human Handedness: Genetics, Microtubules, Neuropsychiatric Diseases and Brain Language Areas (2018) (8)
Introduction to the Special Issue: Genome-Wide Association Studies (2009) (8)
Controlling the false discovery rate in GWAS with population structure (2020) (8)
Population-scale analysis of common and rare genetic variation associated with hearing loss in adults (2021) (7)
FDR control in GWAS with population structure (2020) (6)
A non-linear regression method for estimation of gene–environment heritability (2020) (5)
Reply to "Genomic Control to the extreme" (2004) (5)
Genotyping, sequencing and analysis of 140,000 adults from the Mexico City Prospective Study (2022) (5)
Joint Genotype Calling With Array and Sequence Data (2012) (5)
Integrative haplotype estimation with sub-linear complexity (2018) (4)
Gene-environment interactions using a Bayesian whole genome regression model (2019) (4)
Multiancestry exome sequencing reveals INHBE mutations associated with favorable fat distribution and protection from diabetes (2022) (4)
Explaining Missing Heritability Using Gaussian Process Regression (2016) (4)
Exome sequencing and characterization of 49,960 individuals in the UK Biobank (2020) (4)
Leveraging Identity-by-Descent for Accurate Genotype Inference in Family Sequencing Data (2015) (4)
Author response: Unified single-cell analysis of testis gene regulation and pathology in five mouse strains (2019) (3)
Type 2 Diabetes and Triglyceride Levels Genome-Wide Association Analysis Identifies Loci (3)
A phenome-wide association and Mendelian Randomisation study of polygenic risk for depression in UK Biobank (2020) (3)
Lecture 5 : The Poisson Distribution Jonathan Marchini (2008) (3)
Rare Variant Analysis of Human and Rodent Obesity Genes in Individuals with Severe Childhood Obesity (2017) (2)
Genomic partitioning and cross-population polygene scoring of major depressive disorder in N=11,651 Han Chinese women using low-pass sequencing data (2014) (2)
Independent Component Analysis of Functional Magnetic Resonance Imaging Data Using Wavelet Dictionaries (2007) (2)
Retraction Note: 11,670 whole-genome sequences representative of the Han Chinese population from the CONVERGE project (2017) (2)
Common genetic variation indicates separate etiologies for periventricular and deep white matter hyperintensities (2019) (2)
Universal continuous severity traits underlying hundreds of Parkinson\'s disease clinical features (2019) (2)
Four-Dimensional Sparse Bayesian Tensor Decomposition for Gene Expression Data (2020) (2)
The Plight of Muntaser Ibrahim (2019) (1)
Lecture 4 : The Binomial Distribution (1)
Low-frequency variation in TP53 has large effects on head circumference and intracranial volume (2019) (1)
The Uk Bileve Study: The First Genetic Study In Uk Biobank Identifies Novel Regions Associated With Airway Obstruction And Smoking Behaviour (2015) (1)
Molecular Signatures of M ajor Depression (2015) (1)
Genome-wide association study of liver fat, iron, and extracellular fluid fraction in the UK Biobank (2021) (1)
Assessing population structure and its effects on association studies in a genome wide SNP dataset. (2002) (1)
Haplotype Inference for the Phase I HapMap (2007) (1)
Correction: Genome-wide gene-environment analyses of major depressive disorder and reported lifetime traumatic experiences in UK Biobank (2020) (1)
Universitet Low-frequency variation in TP 53 has large effects on head circumference and intracranial (2019) (0)
Non-linear randomized Haseman-Elston regression for estimation of gene-environment heritability (2020) (0)
RETRACTED ARTICLE: 11,670 whole-genome sequences representative of the Han Chinese population from the CONVERGE project (2017) (0)
Applying polygenic risk scoring for psychiatric disorders to a large family with bipolar disorder and major depressive disorder (2018) (0)
The spatial correspondence and genetic influence of interhemispheric connectivity with white matter microstructure (2019) (0)
Bayesian methods for multivariate phenotype analysis in genome-wide association studies (2013) (0)
Imputing genotypes in genome-wide association studies (2008) (0)
Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression (2018) (0)
Refining the accuracy of validated target identification through coding variant fine-mapping in type 2 diabetes (2018) (0)
CONVERGE dataset: 12,000 whole-genome sequences representative of the Han Chinese population (2016) (0)
Fine-mapping type 2 diabetes loci to single-variant resolution using high-density imputation and islet-specific epigenome maps (2018) (0)
Genome-wide association and Mendelian randomisation analysis provide insights into the pathogenesis of heart failure (2020) (0)
Rice imputation files: reference panel and recombination map (2021) (0)
Diabetes and Triglyceride Levels Genome-Wide Association Analysis Identifies Loci for Type 2 (2011) (0)
Universal latent axes capturing Parkinson’s patient deep phenotypic variation reveals patients with a high genetic risk for Alzheimer’s disease are more likely to develop a more aggressive form of Parkinson’s (2019) (0)
Universal clinical Parkinson’s disease axes identify a major influence of neuroinflammation (2022) (0)
Genome-wide association analyses identify 44 risk variants and refine the genetic architecture ofmajor depressive disorder (2018) (0)
Statistical methods for the analysis of genetic association studies (2008) (0)
A model-based approach to capture genetic variation for future Material Supplemental (2006) (0)
An imputation platform to enhance integration of rice genetic resources (2018) (0)
Haplotype estimation for biobank scale datasets 1 2 (2016) (0)
Integrated analysis of environmental and genetic influences on cord blood DNA methylation in new-borns (2019) (0)
Bayesian methods for estimating human ancestry using whole genome SNP data (2012) (0)
Shared polygenic effects of FEV1 in the first genetic study in UK Biobank (2015) (0)
Talk in ASHG 2008 Philadelphia PA (2008) (0)
Chapter 10 – Genotype Imputation (2011) (0)
Imputation in genome-wide association analysis (2017) (0)
Rare coding variants in CHRNB2 reduce the likelihood of smoking (2022) (0)
Identification of common genetic risk variants for autism spectrum disorder (2019) (0)
Comparative performances of machine learning methods for classifying Crohn Disease patients using genome-wide genotyping data (2019) (0)
48 COVID-19 and H1N1 Pneumonia: Reanalysis and Comparison of Two Cohorts (2022) (0)
Statistical methods for genotype microarray data on large cohorts of individuals (2014) (0)

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University of Oxford

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