José Onuchic
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Brazilian-American physicist
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José Onuchicphysics Degrees
Physics
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#2834
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Biophysics
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#78
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Physics
José Onuchic's Degrees
- PhD Physics University of California, San Diego
Why Is José Onuchic Influential?
(Suggest an Edit or Addition)According to Wikipedia, José Nelson Onuchic is a Brazilian and American physicist, the Harry C & Olga K Wiess Professor of Physics at Rice University. He does research in molecular biophysics, condensed matter chemistry, and genetic networks, and is known for the folding funnel hypothesis stating that the native state of a protein is a deep minimum of free energy for the protein's natural conditions among its possible configurations. He was the college master for Lovett College at Rice University from 2014 to 2019.
José Onuchic's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Funnels, pathways, and the energy landscape of protein folding: A synthesis (1994) (2349)
- Theory of protein folding: the energy landscape perspective. (1997) (1832)
- Direct-coupling analysis of residue coevolution captures native contacts across many protein families (2011) (1155)
- Theory of protein folding. (2004) (1154)
- Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins. (2000) (1102)
- Water mediation in protein folding and molecular recognition. (2006) (820)
- Protein folding funnels: a kinetic approach to the sequence-structure relationship. (1992) (800)
- Effect of friction on electron transfer in biomolecules (1985) (552)
- Implications of the Hybrid Epithelial/Mesenchymal Phenotype in Metastasis (2015) (536)
- Protein electron transfer rates set by the bridging secondary and tertiary structure. (1991) (533)
- Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins (2003) (463)
- Protein folding mediated by solvation: Water expulsion and formation of the hydrophobic core occur after the structural collapse (2002) (454)
- Toward an outline of the topography of a realistic protein-folding funnel. (1995) (453)
- DIFFUSIVE DYNAMICS OF THE REACTION COORDINATE FOR PROTEIN FOLDING FUNNELS (1996) (428)
- MicroRNA-based regulation of epithelial–hybrid–mesenchymal fate determination (2013) (396)
- The Energetics and Physiological Impact of Cohesin Extrusion (2018) (321)
- An all‐atom structure‐based potential for proteins: Bridging minimal models with all‐atom empirical forcefields (2009) (315)
- Protein topology determines binding mechanism. (2004) (301)
- Folding a protein in a computer: An atomic description of the folding/unfolding of protein A (2003) (299)
- Folding funnels and frustration in off-lattice minimalist protein landscapes. (1998) (299)
- Protein folding funnels: the nature of the transition state ensemble. (1996) (295)
- SMOG@ctbp: simplified deployment of structure-based models in GROMACS (2010) (279)
- Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations (2006) (273)
- Pathway analysis of protein electron-transfer reactions. (1992) (268)
- Folding kinetics of proteinlike heteropolymers (1994) (267)
- Conformational transitions of adenylate kinase: switching by cracking. (2007) (261)
- Self-regulating gene: an exact solution. (2005) (248)
- Electron tunneling through covalent and noncovalent pathways in proteins (1987) (239)
- Transferable model for chromosome architecture (2016) (232)
- The energy landscape theory of protein folding: insights into folding mechanisms and scenarios. (2000) (223)
- Exploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A. (1999) (215)
- Quantifying the roughness on the free energy landscape: entropic bottlenecks and protein folding rates. (2004) (212)
- Dynamically controlled protein tunneling paths in photosynthetic reaction centers. (2000) (211)
- Genomics-aided structure prediction (2012) (210)
- Conservation of complex knotting and slipknotting patterns in proteins (2012) (210)
- Toward understanding cancer stem cell heterogeneity in the tumor microenvironment (2018) (200)
- A survey of flexible protein binding mechanisms and their transition states using native topology based energy landscapes. (2005) (198)
- How native-state topology affects the folding of dihydrofolate reductase and interleukin-1beta. (2000) (197)
- Walking along chromosomes with super-resolution imaging, contact maps, and integrative modeling (2018) (191)
- Fly-casting in protein-DNA binding: frustration between protein folding and electrostatics facilitates target recognition. (2007) (191)
- Understanding protein folding with energy landscape theory Part I: Basic concepts (2002) (188)
- Head swivel on the ribosome facilitates translocation via intra-subunit tRNA hybrid sites (2010) (184)
- Elucidating cancer metabolic plasticity by coupling gene regulation with metabolic pathways (2019) (179)
- Accommodation of aminoacyl-tRNA into the ribosome involves reversible excursions along multiple pathways. (2010) (177)
- The shadow map: a general contact definition for capturing the dynamics of biomolecular folding and function. (2012) (176)
- SMOG 2: A Versatile Software Package for Generating Structure-Based Models (2016) (176)
- Deciding fate in adverse times: Sporulation and competence in Bacillus subtilis (2009) (170)
- Classical and quantum pictures of reaction dynamics in condensed matter: resonances, dephasing, and all that (1988) (169)
- Interplay among tertiary contacts, secondary structure formation and side-chain packing in the protein folding mechanism: all-atom representation study of protein L. (2003) (166)
- Modeling the Genetic Regulation of Cancer Metabolism: Interplay between Glycolysis and Oxidative Phosphorylation. (2017) (164)
- Electron tunneling pathways in ruthenated proteins (1990) (163)
- Domain swapping is a consequence of minimal frustration. (2004) (163)
- De novo prediction of human chromosome structures: Epigenetic marking patterns encode genome architecture (2017) (162)
- Taking a Walk on a Landscape (2001) (161)
- Protein folding mechanisms and the multidimensional folding funnel (1998) (160)
- Kinetic and thermodynamic analysis of proteinlike heteropolymers: Monte Carlo histogram technique (1995) (160)
- Water and proteins: a love-hate relationship. (2004) (157)
- Dodging the crisis of folding proteins with knots (2009) (156)
- Coevolutionary signals across protein lineages help capture multiple protein conformations (2013) (156)
- NAF-1 and mitoNEET are central to human breast cancer proliferation by maintaining mitochondrial homeostasis and promoting tumor growth (2013) (153)
- A Stevedore's Protein Knot (2010) (150)
- A predictive theoretical model for electron tunneling pathways in proteins (1990) (145)
- Some aspects of electron-transfer reaction dynamics (1986) (143)
- High-resolution protein complexes from integrating genomic information with molecular simulation (2009) (142)
- Topological frustration and the folding of interleukin-1 beta. (2006) (141)
- Internal strain regulates the nucleotide binding site of the kinesin leading head (2007) (136)
- Absolute rate theories of epigenetic stability. (2005) (129)
- Biomolecular dynamics: order–disorder transitions and energy landscapes (2012) (128)
- Probing the folding free energy landscape of the src-SH3 protein domain (2002) (127)
- Structure-function analysis of NEET proteins uncovers their role as key regulators of iron and ROS homeostasis in health and disease. (2015) (124)
- Mechanical control of the directional stepping dynamics of the kinesin motor (2007) (124)
- Facile transfer of [2Fe-2S] clusters from the diabetes drug target mitoNEET to an apo-acceptor protein (2011) (121)
- Understanding protein folding with energy landscape theory Part II: Quantitative aspects (2002) (118)
- Robustness and generalization of structure‐based models for protein folding and function (2009) (117)
- Interrogating the topological robustness of gene regulatory circuits by randomization (2017) (115)
- Jagged–Delta asymmetry in Notch signaling can give rise to a Sender/Receiver hybrid phenotype (2015) (114)
- Theory and Practice of Electron Transfer within Proteinminus signProtein Complexes: Application to the Multidomain Binding of Cytochrome c by Cytochrome c Peroxidase. (1996) (111)
- Targeting CPT1A-mediated fatty acid oxidation sensitizes nasopharyngeal carcinoma to radiation therapy (2018) (111)
- Landscape approaches for determining the ensemble of folding transition states: success and failure hinge on the degree of frustration. (2000) (108)
- Simple energy landscape model for the kinetics of functional transitions in proteins. (2005) (106)
- Coevolutionary information, protein folding landscapes, and the thermodynamics of natural selection (2014) (104)
- Mapping electron tunneling pathways: an algorithm that finds the "minimum length"/maximum coupling pathway between electron donors and acceptors in proteins (1992) (103)
- Notch-Jagged signalling can give rise to clusters of cells exhibiting a hybrid epithelial/mesenchymal phenotype (2016) (102)
- Toward rationally redesigning bacterial two-component signaling systems using coevolutionary information (2014) (101)
- Pressure-induced protein-folding/unfolding kinetics. (1999) (101)
- Slipknotting upon native-like loop formation in a trefoil knot protein (2010) (101)
- Anomalous diffusion, spatial coherence, and viscoelasticity from the energy landscape of human chromosomes (2018) (100)
- Protein electron transport: single versus multiple pathways (1993) (100)
- NEET Proteins: A New Link Between Iron Metabolism, Reactive Oxygen Species, and Cancer. (2018) (99)
- Nonlocal helix formation is key to understanding S-adenosylmethionine-1 riboswitch function. (2009) (98)
- Electronic shift register memory based on molecular electron-transfer reactions (1989) (98)
- NRF2 activates a partial epithelial-mesenchymal transition and is maximally present in a hybrid epithelial/mesenchymal phenotype (2018) (97)
- Prediction of folding mechanism for circular-permuted proteins. (2001) (96)
- Numb prevents a complete epithelial–mesenchymal transition by modulating Notch signalling (2017) (96)
- Excited states of ribosome translocation revealed through integrative molecular modeling (2011) (94)
- Effect of friction on electron transfer: The two reaction coordinate case (1987) (93)
- Symmetry and frustration in protein energy landscapes: a near degeneracy resolves the Rop dimer-folding mystery. (2005) (92)
- Jagged mediates differences in normal and tumor angiogenesis by affecting tip-stalk fate decision (2015) (90)
- Molecular level stochastic model for competence cycles in Bacillus subtilis (2007) (89)
- Tunneling pathway and redox-state-dependent electronic couplings at nearly fixed distance in electron transfer proteins (1992) (89)
- Ligand-induced global transitions in the catalytic domain of protein kinase A (2009) (89)
- Energy landscape of knotted protein folding (2012) (88)
- Investigation of routes and funnels in protein folding by free energy functional methods. (2000) (88)
- The folding and dimerization of HIV-1 protease: evidence for a stable monomer from simulations. (2004) (87)
- Fast-folding experiments and the topography of protein folding energy landscapes. (1996) (85)
- Tristability in cancer-associated microRNA-TF chimera toggle switch. (2013) (84)
- Interprotein electron transfer from cytochrome c2 to photosynthetic reaction center: tunneling across an aqueous interface. (2005) (83)
- Extracting function from a β-trefoil folding motif (2008) (79)
- Direct single-molecule observation of a protein living in two opposed native structures (2009) (79)
- The three-way switch operation of Rac1/RhoA GTPase-based circuit controlling amoeboid-hybrid-mesenchymal transition (2014) (79)
- Magnesium fluctuations modulate RNA dynamics in the SAM-I riboswitch. (2012) (78)
- Enhancing intracellular accumulation and target engagement of PROTACs with reversible covalent chemistry (2019) (78)
- Electron tunneling in azurin: the coupling across a β-sheet (1995) (76)
- Free energy landscape for the binding process of Huperzine A to acetylcholinesterase (2013) (75)
- Dimeric interactions and complex formation using direct coevolutionary couplings (2015) (75)
- Multiple routes lead to the native state in the energy landscape of the β-trefoil family (2006) (74)
- Distinguishing mechanisms underlying EMT tristability (2017) (73)
- Folding time predictions from all-atom replica exchange simulations. (2007) (73)
- Nonlinear susceptibilities of finite conjugated organic polymers (1987) (71)
- 3D genomics across the tree of life reveals condensin II as a determinant of architecture type (2021) (71)
- Cancer-Related NEET Proteins Transfer 2Fe-2S Clusters to Anamorsin, a Protein Required for Cytosolic Iron-Sulfur Cluster Biogenesis (2015) (71)
- Mechanisms of protein assembly: lessons from minimalist models. (2006) (69)
- Molecular bridge effects on distant charge tunneling (1987) (68)
- Conformational Transitions in Adenylate Kinase (2008) (68)
- Effective stochastic dynamics on a protein folding energy landscape. (2006) (68)
- Electron tunneling pathways in proteins : a method to compute tunneling matrix elements in very large systems (1991) (67)
- Solvation in protein folding analysis: combination of theoretical and experimental approaches. (2004) (67)
- Backtracking on the folding landscape of the β-trefoil protein interleukin-1β? (2008) (64)
- The Fe-S cluster-containing NEET proteins mitoNEET and NAF-1 as chemotherapeutic targets in breast cancer (2015) (64)
- The Energetics and Physiological Impact of Cohesin Extrusion (2018) (63)
- Coupled motions in the SH2 and kinase domains of Csk control Src phosphorylation. (2005) (62)
- Understanding stochastic simulations of the smallest genetic networks. (2007) (61)
- Energy landscape along an enzymatic reaction trajectory: Hinges or cracks? (2008) (61)
- Integrated strategy reveals the protein interface between cancer targets Bcl-2 and NAF-1 (2014) (59)
- Mutations as trapdoors to two competing native conformations of the Rop-dimer (2007) (59)
- Dynamics of electron transfer pathways in cytochrome C oxidase. (2004) (59)
- Knotting a Protein in Explicit Solvent (2013) (59)
- Direct coupling analysis for protein contact prediction. (2014) (58)
- The folding funnel landscape for the peptide met‐enkephalin (1998) (58)
- Breast cancer tumorigenicity is dependent on high expression levels of NAF-1 and the lability of its Fe-S clusters (2016) (58)
- From protein folding to protein function and biomolecular binding by energy landscape theory. (2010) (58)
- The energy landscape for protein folding and possible connections to function (2004) (58)
- The dual-basin landscape in GFP folding (2008) (57)
- Modeling the Transitions between Collective and Solitary Migration Phenotypes in Cancer Metastasis (2015) (56)
- Topography of funneled landscapes determines the thermodynamics and kinetics of protein folding (2012) (56)
- The Many Faces of Structure-Based Potentials: From Protein Folding Landscapes to Structural Characterization of Complex Biomolecules (2012) (56)
- Redox-dependent gating of VDAC by mitoNEET (2019) (55)
- Elucidating the druggable interface of protein−protein interactions using fragment docking and coevolutionary analysis (2016) (55)
- A mechanism-based computational model to capture the interconnections among epithelial-mesenchymal transition, cancer stem cells and Notch-Jagged signaling (2018) (55)
- Exploring the Interplay between Topology and Secondary Structural Formation in the Protein Folding Problem (2003) (55)
- Construction of an effective landscape for multistate genetic switches. (2014) (54)
- Stretching lattice models of protein folding. (1999) (53)
- Toward decoding the principles of cancer metastasis circuits. (2014) (53)
- Limiting forms of the tunneling matrix element in the long distance bridge mediated electron transfer problem (1985) (53)
- Transition state and encounter complex for fast association of cytochrome c2 with bacterial reaction center. (2004) (52)
- A novel disulfide bond in the SH2 Domain of the C-terminal Src kinase controls catalytic activity. (2007) (51)
- The two-state reduction for electron and hole transfer in bridge-mediated electron-transfer reactions (1993) (51)
- Quantifying Cancer Epithelial-Mesenchymal Plasticity and its Association with Stemness and Immune Response (2019) (51)
- Hysteresis as a Marker for Complex, Overlapping Landscapes in Proteins. (2013) (51)
- Energy landscapes, glass transitions, and chemical reaction dynamics in biomolecular or solvent environment (1993) (50)
- Kinesin's backsteps under mechanical load. (2009) (50)
- Energetic frustration and the nature of the transition state ensemble in protein folding (2000) (49)
- Order and disorder control the functional rearrangement of influenza hemagglutinin (2014) (49)
- Overcoming residual frustration in domain-swapping: the roles of disulfide bonds in dimerization and aggregation (2005) (48)
- Connecting energy landscapes with experimental rates for aminoacyl-tRNA accommodation in the ribosome. (2010) (48)
- Structure of the human monomeric NEET protein MiNT and its role in regulating iron and reactive oxygen species in cancer cells (2017) (48)
- A Molecular Shift Register Based on Electron Transfer (1988) (47)
- Educating Future Scientists (2003) (47)
- Decoding leader cells in collective cancer invasion (2021) (47)
- From structure to function: the convergence of structure based models and co-evolutionary information. (2014) (47)
- Structure of infectious prions: stabilization by domain swapping (2005) (46)
- Connecting the Sequence-Space of Bacterial Signaling Proteins to Phenotypes Using Coevolutionary Landscapes (2016) (46)
- Periodic, Quasi-periodic and Chaotic Dynamics in Simple Gene Elements with Time Delays (2016) (46)
- The unique fold and lability of the [2Fe-2S] clusters of NEET proteins mediate their key functions in health and disease (2018) (45)
- Gambogic acid identifies an isoform-specific druggable pocket in the middle domain of Hsp90β (2016) (45)
- Activation of apoptosis in NAF-1-deficient human epithelial breast cancer cells (2016) (45)
- Generalized Manning Condensation Model Captures the RNA Ion Atmosphere. (2015) (45)
- KINETICS OF PROTEINLIKE MODELS : THE ENERGY LANDSCAPE FACTORS THAT DETERMINE FOLDING (1995) (45)
- The Unique Cysteine Knot Regulates the Pleotropic Hormone Leptin (2012) (44)
- Protein oligomerization through domain swapping: role of inter-molecular interactions and protein concentration. (2005) (44)
- Dynamic coupling between the SH2 domain and active site of the COOH terminal Src kinase, Csk. (2004) (43)
- Towards decoding the coupled decision-making of metabolism and epithelial-to-mesenchymal transition in cancer (2020) (43)
- Understanding the Principles of Pattern Formation Driven by Notch Signaling by Integrating Experiments and Theoretical Models (2020) (43)
- Knotting pathways in proteins. (2013) (42)
- Chemical physics of protein folding. (1998) (41)
- Jamming proteins with slipknots and their free energy landscape. (2009) (41)
- Effective two-state systems in bridge-mediated electron transfer. A Green function analysis (1993) (41)
- Reduced model captures Mg(2+)-RNA interaction free energy of riboswitches. (2014) (41)
- Long‐Range Electron Transfer in Myoblobin a (1988) (41)
- Specific and nonspecific collapse in protein folding funnels. (2002) (40)
- Pierced Lasso Bundles Are a New Class of Knot-like Motifs (2014) (39)
- ELECTRON-TRANSFER TUBES (2007) (39)
- Electron-tunneling pathways in proteins. (2000) (39)
- Operating principles of Notch–Delta–Jagged module of cell–cell communication (2015) (39)
- Adiabaticity and nonadiabaticity in bimolecular outer‐sphere charge transfer reactions (1988) (39)
- Proposed mechanism for stability of proteins to evolutionary mutations. (1998) (39)
- Electron transfer in proteins: a novel approach for the description of donor-acceptor coupling (1994) (39)
- Probing the kinetics of single molecule protein folding. (2004) (37)
- Equilibrium and kinetic folding pathways of a TIM barrel with a funneled energy landscape. (2005) (37)
- Pathways, pathway tubes, pathway docking, and propagators in electron transfer proteins (1995) (37)
- Interactions between mitoNEET and NAF-1 in cells (2017) (37)
- Connecting thermal and mechanical protein (un)folding landscapes. (2014) (36)
- Analyzing single molecule trajectories on complex energy landscapes using replica correlation functions (1999) (36)
- Modeling putative therapeutic implications of exosome exchange between tumor and immune cells (2014) (35)
- Testing the gene expression classification of the EMT spectrum (2018) (35)
- The origin of nonmonotonic complex behavior and the effects of nonnative interactions on the diffusive properties of protein folding. (2010) (35)
- Mirror images as naturally competing conformations in protein folding. (2012) (35)
- Connection between Simple Models and Quantum Chemical Models for Electron-Transfer Tunneling Matrix Element Calculations: A Dyson's Equations-Based Approach (1996) (35)
- Pericytes enable effective angiogenesis in the presence of proinflammatory signals (2019) (35)
- Contacting the protein folding funnel with NMR. (1997) (34)
- Deciphering the Dynamics of Epithelial-Mesenchymal Transition and Cancer Stem Cells in Tumor Progression (2018) (33)
- A new look at the primary charge separation in bacterial photosynthesis (1992) (33)
- A biophysical model uncovers the size distribution of migrating cell clusters across cancer types (2019) (33)
- Continuum electrostatic model for the binding of cytochrome c2 to the photosynthetic reaction center from Rhodobacter sphaeroides. (2003) (33)
- Electron tunneling pathways in proteins: influences on the transfer rate (1989) (33)
- Structural and energetic heterogeneity in protein folding. I. Theory (2002) (32)
- Phylogenetic analysis of eukaryotic NEET proteins uncovers a link between a key gene duplication event and the evolution of vertebrates (2017) (32)
- What protein folding teaches us about biological function and molecular machines. (2015) (32)
- The native energy landscape for interleukin-1beta. Modulation of the population ensemble through native-state topology. (2005) (31)
- Educating future scientists (2001) (31)
- A structural perspective on the dynamics of kinesin motors. (2011) (31)
- PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer. (2018) (30)
- RACIPE: a computational tool for modeling gene regulatory circuits using randomization (2017) (30)
- Geometrical features of the protein folding mechanism are a robust property of the energy landscape: a detailed investigation of several reduced models. (2008) (30)
- Extinction and resurrection in gene networks (2008) (30)
- Interdomain communication revealed in the diabetes drug target mitoNEET (2011) (29)
- Protein Folding and Structure Prediction from the Ground Up: The Atomistic Associative Memory, Water Mediated, Structure and Energy Model. (2016) (28)
- Intercellular stress reconstitution from traction force data. (2014) (28)
- β-Bulge triggers route-switching on the functional landscape of interleukin-1β (2012) (28)
- A structural model of polyglutamine determined from a host-guest method combining experiments and landscape theory. (2004) (28)
- A driving and coupling “Pac-Man” mechanism for chromosome poleward translocation in anaphase A (2006) (27)
- The Origin of Minus-end Directionality and Mechanochemistry of Ncd Motors (2012) (27)
- Gatekeepers in the ribosomal protein s6: thermodynamics, kinetics, and folding pathways revealed by a minimalist protein model. (2004) (26)
- Symmetry and Kinetic Optimization of Proteinlike Heteropolymers (1997) (26)
- Allostery in the ferredoxin protein motif does not involve a conformational switch (2011) (26)
- The physics of bacterial decision making (2014) (25)
- Protein dynamics and reaction rates: mode-specific chemistry in large molecules? (1988) (25)
- Conformational Transitions in Adenylate Kinase ALLOSTERIC COMMUNICATION REDUCES MISLIGATION * (2008) (25)
- Theory and Practice of Electron Transfer Within Protein-Protein Complexes: Application to the Multidomain Binding of Cytochrome c by Cytochrome c Peroxidase (1997) (25)
- Turning Oscillations Into Opportunities: Lessons from a Bacterial Decision Gate (2013) (25)
- Proteins at Work (2010) (25)
- Allosteric control in a metalloprotein dramatically alters function (2012) (24)
- Molecular origin of the weak susceptibility of kinesin velocity to loads and its relation to the collective behavior of kinesins (2017) (24)
- Exploring chromosomal structural heterogeneity across multiple cell lines (2020) (24)
- Consensus report of the 8 and 9th Weinman Symposia on Gene x Environment Interaction in carcinogenesis: novel opportunities for precision medicine (2018) (24)
- ELECTRON TRANSPORT IN DISORDERED POLYMERIC AND BIOLOGICAL SYSTEMS (1997) (24)
- Equilibrium unfolding of the poly(glutamic acid)20 helix. (2007) (23)
- Adiabaticity criteria for outer-sphere bimolecular electron-transfer reactions (1988) (23)
- Strand swapping regulates the iron-sulfur cluster in the diabetes drug target mitoNEET (2012) (23)
- Docking and electron transfer between cytochrome c2 and the photosynthetic reaction center (1995) (22)
- Multiple versus single pathways in electron transfer in proteins: Influence of protein dynamics and hydrogen bonds (2003) (22)
- Generalized pathway model to compute and analyze tunneling matrix elements in proteins (1998) (22)
- Folding Circular Permutants of IL-1β: Route Selection Driven by Functional Frustration (2012) (21)
- Effect of gatekeepers on the early folding kinetics of a model β-barrel protein (2003) (21)
- Exploring biomolecular machines: energy landscape control of biological reactions (2006) (21)
- Design and proof of concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain (2021) (21)
- Role of metabolic spatiotemporal dynamics in regulating biofilm colony expansion (2018) (20)
- Energy Landscape Analysis of Protein Dimers (2004) (20)
- Magnesium controls aptamer-expression platform switching in the SAM-I riboswitch (2019) (20)
- Theoretical understanding of the interprotein electron transfer between cytochrome c2 and the photosynthetic reaction center (2003) (20)
- Electronic coupling in starburst dendrimers: connectivity, disorder, and finite size effects in macromolecular Bethe lattices (1993) (19)
- The Dominant Folding Route Minimizes Backbone Distortion in SH3 (2012) (19)
- The role of atomic level steric effects and attractive forces in protein folding (2012) (19)
- A magnesium-induced triplex pre-organizes the SAM-II riboswitch (2017) (19)
- Pierced Lasso Topology Controls Function in Leptin. (2017) (19)
- A NEW FRAMEWORK FOR ELECTRON-TRANSFER CALCULATIONS-BEYOND THE PATHWAYS-LIKE MODELS (1998) (19)
- Computational modeling of phosphotransfer complexes in two-component signaling. (2010) (19)
- Modeling the response of a tumor-suppressive network to mitogenic and oncogenic signals (2017) (19)
- An integrated mechanobiochemical feedback mechanism describes chromosome motility from prometaphase to anaphase in mitosis (2008) (19)
- A sequence-compatible amount of native burial information is sufficient for determining the structure of small globular proteins (2009) (18)
- Protein Folding and Structure Prediction from the Ground Up II: AAWSEM for α/β Proteins. (2017) (18)
- Turning death into creative force during biofilm engineering (2012) (17)
- A Scalable Computational Approach for Simulating Complexes of Multiple Chromosomes. (2020) (17)
- The Nucleome Data Bank: web-based resources to simulate and analyze the three-dimensional genome (2019) (17)
- Molecular Simulations Suggest a Force-Dependent Mechanism of Vinculin Activation. (2017) (17)
- The role of coevolutionary signatures in protein interaction dynamics, complex inference, molecular recognition, and mutational landscapes. (2019) (16)
- Substrate-Specific Reorganization of the Conformational Ensemble of CSK Implicates Novel Modes of Kinase Function (2012) (16)
- Exploring the protein folding funnel landscape (1997) (16)
- The folding energy landscape of the dimerization domain of Escherichia coli Trp repressor: a joint experimental and theoretical investigation. (2006) (16)
- Integrating molecular dynamics simulations with chemical probing experiments using SHAPE-FIT. (2015) (16)
- Structure and Dynamics of Solvent Landscapes in Charge-Transfer Reactions (1996) (16)
- A mechanobiochemical mechanism for monooriented chromosome oscillation in mitosis (2007) (15)
- Constructing sequence‐dependent protein models using coevolutionary information (2016) (15)
- Structural and Dynamical Order of a Disordered Protein: Molecular Insights into Conformational Switching of PAGE4 at the Systems Level (2019) (15)
- Cooperation between Magnesium and Metabolite Controls Collapse of the SAM-I Riboswitch. (2017) (14)
- Lowered pH Leads to Fusion Peptide Release and a Highly Dynamic Intermediate of Influenza Hemagglutinin. (2016) (14)
- Thermodynamics and kinetics of folding of a small peptide (2001) (14)
- Strain Mediated Adaptation Is Key for Myosin Mechanochemistry: Discovering General Rules for Motor Activity (2016) (14)
- Structural consequences of hereditary spastic paraplegia disease-related mutations in kinesin (2018) (14)
- Phylogenetic analysis of the CDGSH iron-sulfur binding domain reveals its ancient origin (2018) (14)
- Structural and Energetic Heterogeneity in Protein Folding (2000) (14)
- Drug-Tolerant Idling Melanoma Cells Exhibit Theory-Predicted Metabolic Low-Low Phenotype (2019) (14)
- A method to analyze multi-pathway effects on protein mediated donor-acceptor coupling interactions (1996) (13)
- Estimating the effect of protein dynamics on electron transfer to the special pair in the photosynthetic reaction center (1997) (13)
- Forging tools for refining predicted protein structures (2019) (13)
- Influence of intersite modes on the exchange interaction in electron transfer at large distances (1986) (13)
- Mechanisms of Protein Assembly: Lessons from Minimalist Models (2006) (13)
- Nrf2 Modulates the Hybrid Epithelial/Mesenchymal Phenotype and Notch Signaling During Collective Cancer Migration (2021) (13)
- Decoding the mechanisms underlying cell-fate decision-making during stem cell differentiation by random circuit perturbation (2020) (12)
- Rapid assessment of T-cell receptor specificity of the immune repertoire (2020) (12)
- Braiding topology and the energy landscape of chromosome organization proteins (2019) (12)
- Atomistic simulations indicate the functional loop-to-coiled-coil transition in influenza hemagglutinin is not downhill (2018) (12)
- Sequence co-evolutionary information is a natural partner to minimally-frustrated models of biomolecular dynamics (2016) (12)
- Quantum and classical dynamics in biochemical reactions (2004) (11)
- Modeling the interplay between geometrical and energetic effects in protein folding. (2005) (11)
- Macromolecular assembly of polycystin-2 intracytosolic C-terminal domain (2011) (11)
- Quantum tunneling in biological reactions: the interplay between theory and experiments (2008) (11)
- Interrogating the Topological Robustness of Gene Regulatory Circuits (2016) (11)
- Fluorescent Proteins Detect Host Structural Rearrangements via Electrostatic Mechanism. (2018) (11)
- Uncovering the molecular mechanisms behind disease-associated leptin variants (2018) (11)
- Template-Guided Protein Structure Prediction and Refinement Using Optimized Folding Landscape Force Fields. (2018) (11)
- Protein Structure Prediction in CASP13 using AWSEM-Suite. (2020) (11)
- Molecular mechanisms of the interhead coordination by interhead tension in cytoplasmic dyneins (2018) (11)
- The energy landscape for solvent dynamics in electron transfer reactions: A minimalist model (2002) (10)
- Deciphering the structure of the condensin protein complex (2018) (10)
- Electron Transfer: From Model Compounds to Proteins (1991) (10)
- Geometrical Frustration in Interleukin-33 Decouples the Dynamics of the Functional Element from the Folding Transition State Ensemble (2015) (10)
- Shaping the genome via lengthwise compaction, phase separation, and lamina adhesion (2022) (9)
- A VDAC1-mediated NEET protein chain transfers [2Fe-2S] clusters between the mitochondria and the cytosol and impacts mitochondrial dynamics (2022) (9)
- Electron tunneling in azurin: the coupling across a beta-sheet. (1995) (9)
- Exploring Energy Landscapes of Intrinsically Disordered Proteins: Insights into Functional Mechanisms. (2021) (8)
- RNA as a Complex Polymer with Coupled Dynamics of Ions and Water in the Outer Solvation Sphere. (2018) (8)
- Constructing a folding model for protein S6 guided by native fluctuations deduced from NMR structures. (2015) (8)
- DNA supercoiling-mediated collective behavior of co-transcribing RNA polymerases (2021) (8)
- Dynamic views of ribosome function: Energy landscapes and ensembles (2011) (8)
- Modeling Chikungunya control strategies and Mayaro potential outbreak in the city of Rio de Janeiro (2020) (8)
- Sterically-Confined Rearrangements of SARS-CoV-2 Spike Protein Control Cell Invasion (2021) (8)
- BAP1 forms a trimer with HMGB1 and HDAC1 that modulates gene × environment interaction with asbestos. (2021) (8)
- The anti-apoptotic proteins NAF-1 and iASPP interact to drive apoptosis in cancer cells† †Electronic supplementary information (ESI) available: Experimental section Fig. S1–S4 and Tables S1–S4. See DOI: 10.1039/c8sc03390k (2018) (8)
- Intrinsically disordered proteins: Ensembles at the limits of Anfinsen's dogma (2022) (8)
- Different Scenarios for Inter-Protein Electron Tunneling: The Effect of Water-Mediated Pathways (2002) (7)
- Chromosome Modeling on Downsampled Hi-C Maps Enhances the Compartmentalization Signal. (2021) (7)
- Improving the Thermostability of Xylanase A from Bacillus subtilis by Combining Bioinformatics and Electrostatic Interactions Optimization. (2021) (6)
- Massive conformation change in the prion protein: Using dual‐basin structure‐based models to find misfolding pathways (2012) (6)
- Designing bacterial signaling interactions with coevolutionary landscapes (2018) (6)
- A biophysical model of Epithelial-Mesenchymal Transition uncovers the frequency and size distribution of Circulating Tumor Cell clusters across cancer types (2019) (6)
- Design and proof-of-concept for targeted phage-based COVID-19 vaccination strategies with a streamlined cold-free supply chain (2021) (6)
- Structure-Based Model of RNA Pseudoknot Captures Magnesium-Dependent Folding Thermodynamics. (2019) (6)
- A semi-analytical description of protein folding that incorporates detailed geometrical information. (2011) (6)
- Folding a protein in the computer: reality or hope? (2005) (6)
- An analytical study of the interplay between geometrical and energetic effects in protein folding. (2008) (6)
- The pierced lasso topology leptin has a bolt on dynamic domain composed by the disordered loops I and III. (2020) (5)
- Rotation-Activated and Cooperative Zipping Characterize Class I Viral Fusion Protein Dynamics. (2018) (5)
- Solvent Effects on Protein Folding/Unfolding (2000) (5)
- Donor—Acceptor Electronic Coupling in Ruthenium-Modified Heme Proteins (1996) (5)
- SMOG 2 and OpenSMOG: Extending the limits of structure-based models. (2021) (5)
- Learning Genomic Energy Landscapes from Experiments (2019) (4)
- Biotin-painted proteins have thermodynamic stability switched by kinetic folding routes. (2022) (4)
- Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues (2022) (4)
- Biomolecular Dynamics — Quantum or Classical? Results for Photosynthetic Electron Transfer (1990) (4)
- Nrf2 regulates collective cancer migration by modulating the hybrid epithelial/mesenchymal phenotype (2021) (4)
- Ab initio protein folding simulations using atomic burials as informational intermediates between sequence and structure (2014) (4)
- A Transferable Model For Chromosome Architecture (2016) (4)
- Examining the Ensembles of Amyloid-β Monomer Variants and their Propensities to Form Fibers Using an Energy Landscape Visualization Method (2021) (4)
- Apropos of Universal Epitope Discovery for COVID-19 Vaccines: A Framework for Targeted Phage Display-Based Delivery and Integration of New Evaluation Tools (2021) (4)
- Altered backbone and side-chain interactions result in route heterogeneity during the folding of interleukin-1β (IL-1β). (2013) (4)
- Information and redundancy in the burial folding code of globular proteins within a wide range of shapes and sizes (2016) (4)
- Guiding the design of bacterial signaling interactions using a coevolutionary landscape (2017) (3)
- PAGE4 and Conformational Switching: Insights from Molecular Dynamics Simulations and Implications for Prostate Cancer (2018) (3)
- Pericytes enable effective angiogenesis in the presence of pro-inflammatory signals (2019) (3)
- Molecular Bridge Effects on Distant Charge Tunneling. (1988) (3)
- Key aspects of the past 30 years of protein design (2022) (3)
- Learning from cancer how to defeat bacteria (2013) (3)
- Estimation of Residue-Residue Coevolution using Direct Coupling Analysis Identifies Many Native Contacts Across a Large Number of Domain Families (2012) (3)
- Mechanistic basis of propofol-induced disruption of kinesin processivity (2021) (3)
- Quantitative Characteristic of ncRNA Regulation in Gene Regulatory Networks. (2019) (3)
- Sterically confined rearrangements of SARS-CoV-2 Spike protein control cell invasion (2021) (3)
- Chelated Magnesium Logic Gate Regulates Riboswitch Pseudoknot Formation. (2021) (3)
- Design of a True Molecular Electronic Device: The Electron Transfer Shift Register Memory (1989) (2)
- Jamming Proteins with Slipknots and Their Free Energy Landscape (2010) (2)
- Stochastic fluctuations promote ordered pattern formation of cells in the Notch-Delta signaling pathway (2022) (2)
- Physics transforming the life sciences (2014) (2)
- Exploring Energy Landscapes of Intrinsically Disordered Proteins: Insights into Functional Mechanisms (2021) (2)
- Structural Reorganization and Relaxation Dynamics of Axially Stressed Chromosomes (2022) (2)
- Special issue on protein folding: Experimental and theoretical approaches (2008) (1)
- Expanding Direct Coupling Analysis to Identify Heterodimeric Interfaces from Limited Protein Sequence Data. (2021) (1)
- Mechanical Interplay Between Transcription Elongation and DNA Supercoiling (2021) (1)
- A Tubular View of Electron Transfer in Azurin (1996) (1)
- Decoding the coupled decision-making of the epithelial-mesenchymal transition and metabolic reprogramming in cancer (2022) (1)
- tRNA translocation on the 70S ribosome: the post- translocational translocation intermediate TI(POST) (2010) (1)
- Faculty Opinions recommendation of Sequence co-evolution gives 3D contacts and structures of protein complexes. (2016) (1)
- Faculty Opinions recommendation of Predictive energy landscapes for protein-protein association. (2016) (1)
- Electron Transfer in Proteins: Beyond the Single Pathway Approach. (1996) (1)
- Exploring the energy landscape of riboswitches using collective variables based on tertiary contacts. (2022) (1)
- Epithelial-mesenchymal transition in cancer (2020) (1)
- SMOG 2 and OpenSMOG: Extending the limits of structure-based models (2021) (1)
- Protein Sequence Coevolution, Energy Landscapes and their Connections to Protein Structure, Folding and Function (2018) (1)
- Magnesium Dependence of the RNA Free Energy Landscape (2015) (1)
- Construction of A Self-consistent Landscape for Multistable Gene Regulatory Circuits (2014) (1)
- Modeling Mayaro and Chikungunya Control Strategies in Rio de Janeiro Outbreaks (2019) (1)
- Consensus report of the 8 and 9th Weinman Symposia on Gene x Environment Interaction in carcinogenesis: novel opportunities for precision medicine (2018) (1)
- Deciphering the Dynamics of Epithelial-Mesenchymal Transition and Cancer Stem Cells in Tumor Progression (2019) (1)
- The Rop-Dimer: A Folded Protein Living Between Two Alternate Structures (2009) (1)
- A landscape analysis of friction effects in protein folding (1998) (1)
- Breaking the Code of Bacteria Decision Making (2012) (1)
- Genetic and Structural Analysis of SARS-CoV-2 Spike Protein for Universal Epitope Selection (2022) (1)
- Gene Circuit Explorer (GeneEx): an interactive web-app for visualizing, simulating and analyzing gene regulatory circuits (2020) (1)
- Uncovering the statistical physics of 3D chromosomal organization using data-driven modeling. (2022) (1)
- Contact map dependence of a T-cell receptor binding repertoire. (2021) (1)
- Understanding structural and dynamic control of the effective electronic coupling in protein electron transfer (2008) (0)
- Towards rationally redesigning bacterial signaling systems using information encoded in abundant sequence data (2014) (0)
- Designing proteins to transfer electrons (1993) (0)
- Knotting proteins in implicit solvent (2013) (0)
- 21pWF-1 Exploring the Physical Mechanisms of the Protein Folding Landscape (2003) (0)
- All-atom Models For RNA And Proteins: Simulating Folding And Function (2009) (0)
- 2P114 Analytical Model for Protein Folding(Proteins-stability, folding, and other physicochemical properties,Poster Presentations) (2007) (0)
- A theoretical study of Electron transfer in protein : Influence of protein dynamics and hydrogen bonds (2003) (0)
- Sergio Mascarenhas a Polymath in Physics (2022) (0)
- Simulations of the Ribosome Suggest Reversible Transitions and Parallel Pathways are Involved in the Large-Scale Functional Motions of tRNA During Translation (2010) (0)
- Investigation of the pH Induced Conformational Rearrangement of Influenza Hemagglutinin (2016) (0)
- Faculty Opinions recommendation of Breaking symmetry in protein dimers: designs and functions. (2016) (0)
- Glass-Like Behavior of Magnesium Ions Inside RNA APTamers (2012) (0)
- Distinguishing mechanisms underlying EMT tristability (2017) (0)
- $\alpha$-Helical to $\beta$-Helical Conformation Change in the C-Terminal of the Mammalian Prion Protein (2011) (0)
- Supplementary text: Direct-coupling analysis of residue co-evolution captures native contacts across many protein families (2011) (0)
- Ultrasmall memories based on electron transfer reactions (1989) (0)
- Comparative Analysis of the Residue Co-Evolution of the DNA-Binding Response Regulator Subfamilies (2020) (0)
- The folding of an ``average'' beta trefoil protein. (2007) (0)
- Evolutionary differences in the ACE2 reveals the molecular origins of COVID-19 susceptibility (2021) (0)
- Protein Knot Forming, Terminal-Through-Loop Threading Events can Occur on the Microsecond (<10) Timescale (2012) (0)
- Phylogenetic analysis of the CDGSH iron-sulfur binding domain reveals its ancient origin (2018) (0)
- Information storage at the molecular level - The design of a molecular shift register memory (1989) (0)
- Building toy models of proteins using coevolutionary information (2015) (0)
- Title : A Transferable Model For Chromosome Architecture (2016) (0)
- Analytical Model for Protein Folding (2007) (0)
- Exploring the Origin of Directionality of Ncd Motor using Structure-Based Model (2012) (0)
- How fast is the collapse of proteins during folding (1997) (0)
- Theoretical and computational tools to model multistable gene regulatory networks (2023) (0)
- Modeling Epithelial-Mesenchymal Transitions in Metastatic Cancer (2015) (0)
- Tubular Breakdown of Electron Transfer in Proteins (1998) (0)
- Theoretical modeling of signal processing systems in biology (2011) (0)
- Active dynamics of chromosome polymers (2022) (0)
- Spatial-temporal order-disorder transition in angiogenic NOTCH signaling controls cell fate specification (2022) (0)
- Order parametr for design of proteinlike heteropolymers (1998) (0)
- NAF-1 and iASPP interact to drive apoptosis in cancer cells † (2018) (0)
- Atomistic Simulations of the pH Induced Functional Rearrangement of Influenza Hemagglutinin (2017) (0)
- Inter-head Tension of Cytoplasmic Dynein Regulates the Coordination between Two Heads (2018) (0)
- Faculty Opinions recommendation of A many-body term improves the accuracy of effective potentials based on protein coevolutionary data. (2016) (0)
- Numb prevents a complete EMT by modulating Notch signalling (2017) (0)
- The Crystal Structure of a Human MitoNEET double mutant in which Gly 66 are Asp 67 are both Replaced with Ala Residues (2012) (0)
- Multistability in GTPase-Based Decision Circuits (2014) (0)
- Faculty Opinions recommendation of Three-dimensional structures of membrane proteins from genomic sequencing. (2016) (0)
- High-resolution Prediction and Refinement of Protein Structures (0)
- Faculty Opinions recommendation of Robust and accurate prediction of residue-residue interactions across protein interfaces using evolutionary information. (2016) (0)
- Backbone 1H, 13C, and 15N Chemical Shift Assignments for human Leptin (2020) (0)
- An associative memory Hamiltonian model for DNA and nucleosomes (2022) (0)
- Tunneling Pathways In Proteins: From Biology To Molecular Electronics (1990) (0)
- The Force-Induced Activation of Talin in a Structure-Based Model Simulation (2012) (0)
- Erratum: "Biotin-painted proteins have thermodynamic stability switched by kinetic folding routes" [J. Chem. Phys. 156, 195101 (2022)]. (2022) (0)
- 47 The energy landscape for protein folding and biomolecular machines (2015) (0)
- Dynamics of Electron Transfer Pathways in Redox Proteins (2004) (0)
- A non-orthogonal basis analysis of two-state system in protein electron transfer reactions (1998) (0)
- Tribute to David N. Beratan. (2020) (0)
- Cooperativity of Kinesin Motor Proteins under External Loads (2017) (0)
- Energy vs. native fold: Determinants of the folding transition state structure (1999) (0)
- The Energy Landscape and Dynamics of a Model β-Hairpin (1998) (0)
- The Crystal Structure of a Human MitoNEET mutant with an Ala inserted between Asp 67 and Lys 68 (2012) (0)
- Modeling the Regulation of Cancer Metabolism : Interplay between Glycolysis and OXPHOS (0)
- Redox-controlled proton gating in bovine cytochrome $c$ oxidase (2015) (0)
- Abstract 294: Tumor concentration of metformin is a determinant factor of its regulation of fatty acid β-oxidation and c-Src pathway in triple-negative breast cancer (2023) (0)
- Exploring the protein funnel energy landscape for folding and function (2005) (0)
- De Novo Chromosome Structure Prediction (2017) (0)
- Revealing the Energy Landscapes of Ribosome Function (2011) (0)
- Tribute to Peter G. Wolynes. (2013) (0)
- Optimized Energy Dissipation of Minde Oscillator for Symmetric CellDivision (2014) (0)
- Mechanisms of Protein Assembly and Folding: Lessons from Minimalist Models (2007) (0)
- Side-chain mobility in the folded state of Myoglobin (2017) (0)
- Interphase chromosomes of the Aedes aegypti mosquito are liquid crystalline and can sense mechanical cues. (2023) (0)
- CONFERENCE ON RESEARCH AT THE INTERFACE OF THE LIFE AND PHYSICAL SCIENCES: BRIDGING THE SCIENCES (2004) (0)
- The unique fold and lability of the [2Fe-2S] clusters of NEET proteins mediate their key functions in health and disease (2018) (0)
- The energy landscape for folding and function (2006) (0)
- PNAS Plus Significance Statements (2018) (0)
- EXPLORING THE ENERGY LANDSCAPE OF PROTEIN FOLDING FUNNELS (1996) (0)
- Anomalous Diffusion , Spatial Coherence , and Viscoelasticity from the Epigenetic Energy Landscape of Human Chromosomes (0)
- Title : De Novo Prediction of Human Chromosome Structure s : Epigenetic Marking Patterns Encode Genome Architecture (2017) (0)
- Predicting Actin Interfaces from Genomic Data (2018) (0)
- The Mechanism of Geometrical Frustration in SH3 (2010) (0)
- Predictive Computational Modeling of Chromatin Folding (2016) (0)
- Abstract 1133: Partial EMT, hybrid epithelial-mesenchymal phenotype and epithelial plasticity: role of (miR-200/ZEB) loop (2014) (0)
- Education at the Interface -- Experiences and Perspectives (2010) (0)
- Temporally correlated active forces drive chromosome structure and dynamics (2023) (0)
- Insights in connecting phenotypes in bacteria to coevolutionary information. (2016) (0)
- Energy Landscapes of Protein Self-Assembly: Lessons from Native Topology-Based Models (2007) (0)
- Sergio Mascarenhas a Polymath in Physics (2022) (0)
- Study on the Dynamics of Influenza Hemagglutinin Based on Energy Landscape Theory (2014) (0)
- Structure Based Protein Models and In Vitro Experiments to Investigate the Folding Landscape of the Human Obesity Protein Leptin (2012) (0)
- The role of spatial dynamics in modulating metabolic interactions in biofilm development (2017) (0)
- The Geometrical Origins of a Protein Folding Mechanism (2012) (0)
- Classification : Biological Sciences Molecular Origin of the Weak Susceptibility of Kinesin Velocity to Loads and its Relation to the Collective Behavior of Kinesins Short title : Molecular Origin of the Weak Susceptibility of Kinesin (2017) (0)
- Towards Decoding the Metabolic Plasticity in Cancer: Coupling of Gene Regulation and Metabolic Pathways (2018) (0)
- Contact map dependence of a T-cell receptor binding repertoire. (2023) (0)
- Author response: Sterically confined rearrangements of SARS-CoV-2 Spike protein control cell invasion (2021) (0)
- Abstract 2448: Elucidating the metabolic plasticity of cancer by coupling gene regulation with metabolic pathways (2019) (0)
- Faculty Opinions recommendation of Structural basis of histidine kinase autophosphorylation deduced by integrating genomics, molecular dynamics, and mutagenesis. (2016) (0)
- Atomistic Simulations Reveal a Hindered Transition of the B-Loop Domain of Influenza Hemagglutinin (2018) (0)
- Abstract P5-05-06: Metformin concentration is a deciding factor of its pro- or anti-tumor function in triple negative breast cancer (2022) (0)
- The Role of Exosome-Mediated Cell-Cell Communication in Inducing Phenotypic Changes (2016) (0)
- The role of metabolic spatiotemporal dynamics in modulating biofilm colony expansion (0)
- 2P063 Analytical Model for Protein Folding improved by introducting topological factors(The 48th Annual Meeting of the Biophysical Society of Japan) (2010) (0)
- Protein dynamics controlling electron tunneling routes. Going beyond the Pathways Model (2002) (0)
- Determination of the water geometry in violuric acid monohydrate with a Monte Carlo simulation (1988) (0)
- The protein bridge between redox centres (2020) (0)
- Faculty Opinions recommendation of 3D domain swapping: as domains continue to swap. (2016) (0)
- Abstract 4999: Identifying intercellular phenotypic stability factors for a hybrid epithelial-mesenchymal phenotype (2018) (0)
- Through Bond and Through Space Limits of the Long Distance Electron Transfer Problem (1987) (0)
- Interpreting Protein Folding Experiments with Energy Landscape Theory (2001) (0)
- Multiscale Modeling of Chromatin: Bridging Experiment with Theory (2016) (0)
- An approach to detect the dominant folds of proteinlike heteropolymers from the statistics of a homopolymeric chain (2000) (0)
- Road-blocker HSP disease mutation disrupts pre-organization for ATP hydrolysis in kinesin through a second sphere control (2022) (0)
- Molecular Electronic Shift Registers (1990) (0)
- Abstract 779: The role of exosome-mediated cell-cell communication in inducing phenotypic changes (2016) (0)
- Crystal structure of human Mitochondrial inner NEET protein (MiNT)/CISD3 (2017) (0)
- Phase separation of AB compartments are modulated by lamina-chromatin interaction. (2023) (0)
- Abstract 2397: Significance of the combination of biguanides and fatty acid β-oxidation inhibitors in triple-negative breast cancer (2021) (0)
- New aspects of the theory of electron transfer reaction dynamics (1987) (0)
- Exploring the landscape for protein folding: from function to molecular machines (2013) (0)
- Electron transfer in pentaammineruthenium(III) (a5Ru) derivatives of cytochrtome c peroxidase (1991) (0)
- Native dynamics from diversity in NMR structures (2015) (0)
- Abstract 5568: Towards decoding the interplay between glycolysis and oxidative phosphorylation in cancer (2017) (0)
- BAP1 is a novel regulator of HIF-1α. (2023) (0)
- Multilevel Modeling To Understand The Folding Hysteresis Of GFP (2009) (0)
- Max Delbruck Prize in Biological Physics Talk: Exploring the Energy Landscape for Protein Folding and Function: Integrating Structural Models and Sequence Coevolution Information. (2019) (0)
- Preface to Special Topic on Protein Dynamics: Beyond Static Snapshots in Structural Biology (2016) (0)
- The Crystal Structure of a Human MitoNEET mutant with Asp 67 replaced by a Gly (2012) (0)
- Investigating human chromosome organization by whole-genome simulations. (2023) (0)
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