Joseph Felsenstein
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American phylogeneticist
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#3
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#2
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Evolutionary Biology
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#21
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#11
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#77
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#35
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Biology
Joseph Felsenstein's Degrees
- PhD Genetics Columbia University
- Bachelors Mathematics Columbia University
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Why Is Joseph Felsenstein Influential?
(Suggest an Edit or Addition)According to Wikipedia, Joseph "Joe" Felsenstein is a Professor Emeritus in the Departments of Genome Sciences and Biology at the University of Washington in Seattle. He is best known for his work on phylogenetic inference, and is the author of Inferring Phylogenies, and principal author and distributor of the package of phylogenetic inference programs called PHYLIP. Closely related to his work on phylogenetic inference is his introduction of methods for making statistically independent comparisons using phylogenies.
Joseph Felsenstein's Published Works
Published Works
- CONFIDENCE LIMITS ON PHYLOGENIES: AN APPROACH USING THE BOOTSTRAP (1985) (41063)
- Evolutionary trees from DNA sequences: A maximum likelihood approach (2005) (11357)
- Phylogenies and the Comparative Method (1985) (8682)
- Cases in which Parsimony or Compatibility Methods will be Positively Misleading (1978) (3263)
- Phylogenies from molecular sequences: inference and reliability. (1988) (2223)
- Maximum likelihood estimation of a migration matrix and effective population sizes in n subpopulations by using a coalescent approach (2001) (1704)
- The evolutionary advantage of recombination. (1974) (1506)
- Maximum-likelihood estimation of migration rates and effective population numbers in two populations using a coalescent approach. (1999) (1000)
- SKEPTICISM TOWARDS SANTA ROSALIA, OR WHY ARE THERE SO FEW KINDS OF ANIMALS? (1981) (948)
- A simulation comparison of phylogeny algorithms under equal and unequal evolutionary rates. (1994) (886)
- A Hidden Markov Model approach to variation among sites in rate of evolution. (1996) (857)
- Phylogenies and quantitative characters (1988) (749)
- Inferring species trees directly from biallelic genetic markers: bypassing gene trees in a full coalescent analysis. (2009) (725)
- The theoretical population genetics of variable selection and migration. (1976) (670)
- Inferring phylogenies from protein sequences by parsimony, distance, and likelihood methods. (1996) (649)
- Maximum Likelihood and Minimum-Steps Methods for Estimating Evolutionary Trees from Data on Discrete Characters (1973) (644)
- Numerical Methods for Inferring Evolutionary Trees (1982) (643)
- Maximum-likelihood estimation of evolutionary trees from continuous characters. (1973) (619)
- Maximum likelihood estimation of population growth rates based on the coalescent. (1998) (596)
- DISTANCE METHODS FOR INFERRING PHYLOGENIES: A JUSTIFICATION (1984) (514)
- The number of evolutionary trees (1978) (493)
- Estimating effective population size and mutation rate from sequence data using Metropolis-Hastings sampling. (1995) (455)
- EVOLUTIONARY TREES FROM GENE FREQUENCIES AND QUANTITATIVE CHARACTERS: FINDING MAXIMUM LIKELIHOOD ESTIMATES (1981) (439)
- Confidence Limits on Phylogenies With a Molecular Clock (1985) (419)
- An evolutionary model for maximum likelihood alignment of DNA sequences (1991) (378)
- Is there something wrong with the bootstrap on phylogenies? A reply to Hillis and Bull (1993) (352)
- PHYLIP: phylogenetic inference package version 3.5c. Distributed over the Internet (1993) (343)
- Parsimony in Systematics: Biological and Statistical Issues (1983) (323)
- An alternating least squares approach to inferring phylogenies from pairwise distances. (1997) (317)
- Accuracy of coalescent likelihood estimates: do we need more sites, more sequences, or more loci? (2006) (295)
- Inching toward reality: An improved likelihood model of sequence evolution (2004) (266)
- A likelihood approach to character weighting and what it tells us about parsimony and compatibility (1981) (254)
- Inbreeding and variance effective numbers in populations with overlapping generations. (1971) (246)
- Short Tree, Long Tree, Right Tree, Wrong Tree: New Acquisition Bias Corrections for Inferring SNP Phylogenies (2015) (243)
- Estimating effective population size from samples of sequences: inefficiency of pairwise and segregating sites as compared to phylogenetic estimates. (1992) (225)
- Comparative Methods with Sampling Error and Within‐Species Variation: Contrasts Revisited and Revised (2008) (220)
- THE ROBUSTNESS OF HOMOGENEITY TESTS IN 2 X N TABLES. (1965) (211)
- Invariants of phylogenies in a simple case with discrete states (1987) (207)
- Maximum likelihood estimation of recombination rates from population data. (2000) (205)
- Linkage and selection: theoretical analysis of the deterministic two locus random mating model. (1967) (189)
- The effect of assortative mating on the genetic composition of a population. (1968) (186)
- The evolutionary advantage of recombination. II. Individual selection for recombination. (1976) (180)
- The effect of linkage on directional selection. (1965) (180)
- PHYLOGENIES FROM RESTRICTION SITES: A MAXIMUM‐LIKELIHOOD APPROACH (1992) (178)
- A Pain in the Torus: Some Difficulties with Models of Isolation by Distance (1975) (176)
- Usefulness of single nucleotide polymorphism data for estimating population parameters. (2000) (166)
- A Comparative Method for Both Discrete and Continuous Characters Using the Threshold Model (2011) (166)
- Using the quantitative genetic threshold model for inferences between and within species (2005) (165)
- Population genetics and ecology (1976) (159)
- A primer of population biology (1972) (153)
- How can we infer geography and history from gene frequencies? (1982) (153)
- Estimating effective population size from samples of sequences: a bootstrap Monte Carlo integration method. (1992) (144)
- Statistical inference of phylogenies (1983) (138)
- Controlling for non-independence in comparative analysis of patterns across populations within species (2011) (136)
- Mathematics vs. Evolution: Mathematical Evolutionary Theory. (1989) (126)
- Alternative Methods of Phylogenetic Inference and their Interrelationship (1979) (116)
- The occurrence of new mutants in the X-linked recessive Lesch-Nyhan disease. (1976) (104)
- The troubled growth of statistical phylogenetics. (2001) (102)
- Taking Variation of Evolutionary Rates Between Sites into Account in Inferring Phylogenies (2001) (100)
- 10. The Statistical Approach to Inferring Evolutionary Trees and What It Tells Us About Parsimony and Compatibility (1984) (73)
- Likelihoods on coalescents: a Monte Carlo sampling approach to inferring parameters from population samples of molecular data (1999) (71)
- Excursions along the Interface between Disruptive and Stabilizing Selection. (1979) (68)
- Quantitative characters, phylogenies, and morphometrics (2002) (67)
- Phylogenies from Gene Frequencies: A Statistical Problem (1985) (65)
- DISTANCE METHODS: A REPLY TO FARRIS (1986) (62)
- Isolation by distance in a hierarchically clustered population (1983) (59)
- An efficient method for matching nucleic acid sequences (1982) (58)
- THE TOPOLOGY-DEPENDENT PERMUTATION TEST FOR MONOPHYLY DOES NOT TEST FOR MONOPHYLY (1996) (55)
- On the Biological Significance of the Cost of Gene Substitution (1971) (55)
- Parsimony and likelihood: an exchange (1986) (55)
- A Two-Stage Pruning Algorithm for Likelihood Computation for a Population Tree (2008) (52)
- Computational Molecular Evolution.Oxford Series in Ecology and Evolution.ByZiheng Yang. Oxford and New York: Oxford University Press. $115.00 (hardcover); $52.50 (paper). xvi + 357 p.; ill.; index. 0‐19‐856699‐9 (hc); 0‐19‐856702‐2 (pb). 2006. (2008) (45)
- The rate of loss of multiple alleles in finite haploid populations. (1971) (45)
- Estimators of the human effective sex ratio detect sex biases on different timescales. (2010) (44)
- Counting phylogenetic invariants in some simple cases. (1991) (40)
- Population Differences in Quantitative Characters and Gene Frequencies: A Comment on Papers by Lewontin and Rogers (1986) (38)
- Continuous-genotype models and assortative mating (1981) (37)
- Methods for Inferring Phylogenies: A Statistical View (1983) (36)
- A maximum likelihood approach to the detection of selection from a phylogeny (1990) (35)
- A mathematically tractable family of genetic mapping functions with different amounts of interference. (1979) (34)
- Genetic drift in clines which are maintained by migration and natural selection. (1975) (34)
- A model of kin selection for an altruistic trait considered as a quantitative character. (1978) (32)
- The Number of Evolutionary Steps on Random and Minimum Length Trees for Random Evolutionary Data (1993) (31)
- r- and K-Selection in a Completely Chaotic Population Model (1979) (28)
- Estimation of hominoid phylogeny from a DNA hybridization data set (2005) (28)
- Book Review:An Introduction to Mathematical Taxonomy. G. Dunn, B. S. Everitt (1983) (26)
- Probability models and statistical methods in genetics (1972) (24)
- Uncorrelated genetic drift of gene frequencies and linkage disequilibrium in some models of linked overdominant polymorphisms. (1974) (22)
- The effect of assortative mating on the genetic composition of a population. (1982) (22)
- Bibliography of theoretical population genetics (1981) (20)
- USING THE BOOTSTRAP (1985) (18)
- Sampling among haplotype resolutions in a coalescent‐based genealogy sampler (2000) (18)
- Answer to criticism of Morton and Lalouel. (1977) (17)
- Parsimony in systematics (1983) (15)
- The substitutional load in a finite population (1972) (15)
- Access to theory (1987) (14)
- The assessment of population affinities in man (1973) (12)
- Perils of molecular introspection (1988) (12)
- Swapping Birth and Death: Symmetries and Transformations in Phylodynamic Models (2018) (10)
- Discussion: Jackknife, Bootstrap and Other Resampling Methods in Regression Analysis (1986) (9)
- Applications of Metropolis-Hastings Genealogy Sampling (1997) (9)
- Molecular evolutionary genetics By. M. Nei. New York: Columbia University Press. (1987). 512 pp. $50.00 (1987) (8)
- A view of population genetics. (1980) (7)
- Macroevolution in a Model Ecosystem (1978) (6)
- Finding All Monothetic Subsets of a Taxonomic Group (1975) (6)
- [Statistical Analysis of Hominoid Molecular Evolution]: Comment (1987) (5)
- Isolation by distance: reply to Lalouel and Morton (1979) (4)
- Coalescents, Phylogenies, and Likelihoods. (1999) (4)
- ANNUAL MEETING SOCIETY FOR THE STUDY OF EVOLUTION (1986) (4)
- Evolution in the twentieth century (1986) (4)
- ANNUAL MEETING SOCIETY FOR THE STUDY OF EVOLUTION (1986) (4)
- Proceedings of the Michigan Morphometrics Workshop. Based on a Workshop Held in Ann Arbor, Michigan, 16-29 May 1988.F. James Rohlf , Fred L. Bookstein (1992) (4)
- Theoretical Aspects of Population Genetics. Monographs in Population Biology. Volume 4.Motoo Kimura , Tomoko Ohta (1972) (3)
- Obituary: Allan Charles Wilson (1934–1991) (1991) (3)
- Evolutionary advantage of recombination. [Computer simulation] (1974) (2)
- Biomolecular data. A resource in transition: edited by Rita R. Colwell, Oxford University Press, 1989. £30.00 (xiv + 367 pages) ISBN 0 19 854247 X (1989) (2)
- Covariation of gene frequencies in a stepping-stone lattice of populations1 (2014) (2)
- Human Evolutionary Trees.E. A. Thompson (1977) (2)
- 1 TREES OF GENES IN POPULATIONS (2)
- Taxonomic analysis in biology (book review) (1986) (2)
- Another Beacon in the Fog (1983) (2)
- WAITING FOR POST-NEO-DARWIN. (1986) (2)
- Evolutionary Theory: Mathematical and Conceptual Foundations. By Sean H Rice. Sunderland (Massachusetts): Sinauer Associates. $49.95 (paper). xiv + 370 p; ill.; index. ISBN: 0–87893–702–1. 2004. (2006) (2)
- Reply to Turner's Letter (1972) (2)
- Molecular population genetics and evolution. (1976) (1)
- Waiting for Post-Neo-Darwin@@@Evolutionary Theory: Paths into the Future. (1986) (1)
- An ancestor's influence (2004) (1)
- WHAT MATHEMATICIANS WILL SEE OF PHYLOGENIES1 (2006) (1)
- Computers in Systematics: One Perspective (1983) (1)
- Bootstrap Confidence Levels for Phylogenetic Trees (2008) (1)
- Exact coalescent likelihoods for unlinked markers in finite-sites mutation models (2011) (1)
- Biological and Statistical Issues (2016) (1)
- Comparatively better (1984) (0)
- A View of Population Genetics: Mathematical Population Genetics . Warren J. Ewens. Springer-Verlag, New York, 1979. xii, 328 pp. $32. Biomathematics, vol. 9. (1980) (0)
- Genes in populations. (1992) (0)
- Phylogenies Meet Quantitative Genetics: Some Attempts to Extrapolate (2014) (0)
- Book Review:Taxonomic Analysis in Biology: Computers, Models, and Databases. Lois A. Abbott, Frank A. Bisby, David J. Rogers (1986) (0)
- A Theme That Will Be Repeated@@@Evolution and Variation in Multigene Families (1982) (0)
- Book Review (1980) (0)
- Population Genetics from France: The Genetic Structure of Populations . Albert Jacquard. Translated from the French edition (Paris, 1970) by D. and B. Charlesworth. Springer-Verlag, New York, 1974. xviii, 570 pp., illus. $39.40. Biomathematics, vol. 5. (1974) (0)
- Quantitative genetics. (1979) (0)
- ANNUAL MEETING SOCIETY FOR THE STUDY OF EVOLUTION (1986) (0)
- Theoretical studies of speciation and evolutionary inference. Annual progress report, October 1980-September 1981 (1981) (0)
- ANNUAL MEETING SOCIETY FOR THE STUDY OF EVOLUTION (1986) (0)
- Genetic structure of populations. (1975) (0)
- Further selection (1988) (0)
- Phylogeny , II : Compatibility and Maximum Likelihood — DRAFT February 26 , 1998 Lecturer : (1998) (0)
- Editorial help (2004) (0)
- Book Review:First Course in Population Genetics. Ching Chun Li (1977) (0)
- Comparative methods in R hackathon (2008) (0)
- Book Review:Polymorphisms with Linked Loci. V. Arunachalam, A. R. G. Owen (1973) (0)
- EDITORIAL COMMITTEE (1984) (2017) (0)
- Statistical phylogeography: Migrate-N, IMa, and ABC (2018) (0)
- Genetics of Populations. Philip W. Hedrick (1985) (0)
- Computational molecular biology: Sources and methods for sequence analysis: edited by Arthur M. Lesk, Oxford University Press, 1988. £25.00 (xii + 254 pages) ISBN 0 19 854218 6 (1989) (0)
- Evolutionary Genetics Population Genetics, part 2 (2002) (0)
- The American Society of Naturalists Phylogenies and the Comparative Method (2008) (0)
- THE QUARTERLY REVIEW (1982) (0)
- Determining Phylogenies by Parsimony February 27 , 1996 Lecturer : (0)
- ISCB/SPRINGER series in computational biology (2014) (0)
- Allan Charles Wilson (1934-1991) (1991) (0)
- Book Review:The Mathematical Theory of Quantitative Genetics. M. G. Bulmer (1982) (0)
- OF VARIABLE SELECTION AND MIGRATION (1976) (0)
- Book reviews (1991) (0)
- Quantitative Genetics: Quantitative Genetic Variation . James N. Thompson, Jr., and J. M. Thoday, Eds. Academic Press, New York, 1979. xiv, 306 pp., illus. $19.50. (1979) (0)
- A THEME THAT WILL BE REPEATED (1982) (0)
- Selected Genetic Papers of J. B. S. Haldane. Edited by K. R. Dronamraju. Garland Publishing. 1990. 542 pages. $100.00. ISBN 0 8240 0473 6. (1992) (0)
- Population Theory: Mathematical Topics in Population Genetics . Ken-ichi Kojima, Ed. Springer-Verlag, New York, 1970. x, 400 pp., illus. $18.70. Biomathematics, vol. 1. (1971) (0)
- Letter from Joseph Felsenstein to Joshua Lederberg (1978) (0)
- The Geometry of Population Genetics.Ethan Akin (1981) (0)
- Molecular Evolution (0)
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