Jotun Hein

Q: What Schools Are Affiliated With Jotun Hein

Jotun Hein is affiliated with the following schools: Imperial College London, University of Oxford

Jotun Hein's AcademicInfluence.com Rankings

Jotun Hein

Mathematics

#5336

World Rank

#7515

Historical Rank

Statistics

#442

World Rank

#513

Historical Rank

mathematics Degrees

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Mathematics

Why Is Jotun Hein Influential?

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According to Wikipedia, Jotun John Piet Hein is Professor of Bioinformatics at the Department of Statistics of the University of Oxford and a professorial fellow of University College, Oxford. Hein was previously Director of the Bioinformatics Research Centre at Aarhus University, Denmark.

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Jotun Hein's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Consequences of recombination on traditional phylogenetic analysis. (2000) (550)
Gene Genealogies, Variation and Evolution - A Primer in Coalescent Theory (2004) (519)
Pfold: RNA secondary structure prediction using stochastic context-free grammars (2003) (494)
Unified approach to alignment and phylogenies. (1990) (403)
RNA secondary structure prediction using stochastic context-free grammars and evolutionary history (1999) (386)
Reconstructing evolution of sequences subject to recombination using parsimony. (1990) (284)
On the Complexity of Comparing Evolutionary Trees (1996) (243)
Statistical Methods in Bioinformatics: An Introduction (2002) (219)
A heuristic method to reconstruct the history of sequences subject to recombination (1993) (210)
A new method that simultaneously aligns and reconstructs ancestral sequences for any number of homologous sequences, when the phylogeny is given. (1989) (187)
Genome-Wide Identification of Human Functional DNA Using a Neutral Indel Model (2005) (182)
Bayesian coestimation of phylogeny and sequence alignment (2005) (176)
Recombination as a point process along sequences. (1999) (165)
Using biological networks to search for interacting loci in genome-wide association studies (2009) (156)
The genetic diversity of European type PRRSV is similar to that of the North American type but is geographically skewed within Europe. (2002) (153)
Uncertainty in homology inferences: assessing and improving genomic sequence alignment. (2008) (150)
Autocatalytic Sets and the Origin of Life (2010) (137)
A simulation study of the reliability of recombination detection methods. (2001) (129)
Gene finding with a hidden Markov model of genome structure and evolution (2003) (127)
Recombination and the molecular clock. (2000) (126)
The coalescent with gene conversion. (2000) (125)
A comparative method for finding and folding RNA secondary structures within protein-coding regions. (2004) (111)
Constructing Minimal Ancestral Recombination Graphs (2005) (110)
StatAlign: an extendable software package for joint Bayesian estimation of alignments and evolutionary trees (2008) (102)
A nucleotide substitution model with nearest-neighbour interactions (2004) (98)
Statistical alignment: computational properties, homology testing and goodness-of-fit. (2000) (91)
Minimum Recombination Histories by Branch and Bound (2005) (78)
A molecular clock dates the common ancestor of European-type porcine reproductive and respiratory syndrome virus at more than 10 years before the emergence of disease. (2001) (77)
The Cardamine hirsuta genome offers insight into the evolution of morphological diversity (2016) (75)
The Role of Flexibility and Conformational Selection in the Binding Promiscuity of PDZ Domains (2012) (75)
Recombination, balancing selection and phylogenies in MHC and self-incompatibility genes. (2001) (71)
Frnakenstein: multiple target inverse RNA folding (2012) (68)
Rahnuma: hypergraph-based tool for metabolic pathway prediction and network comparison (2009) (67)
An optimal algorithm to reconstruct trees from additive distance data. (1989) (66)
A tree reconstruction method that is economical in the number of pairwise comparisons used. (1989) (65)
Parsimonious Reconstruction of Sequence Evolution and Haplotype Blocks (2003) (64)
An Efficient Algorithm for Statistical Multiple Alignment on Arbitrary Phylogenetic Trees (2003) (59)
The ancestry of a sample of sequences subject to recombination. (1999) (55)
Statistical Alignment: Recent Progress, New Applications, and Challenges (2005) (52)
Comparative analysis of metabolic networks provides insight into the evolution of plant pathogenic and nonpathogenic lifestyles in Pseudomonas. (2011) (46)
On the minimum number of recombination events in the evolutionary history of DNA sequences (2004) (46)
An Algorithm for Statistical Alignment of Sequences Related by a Binary Tree (2000) (45)
An evolutionary model for protein-coding regions with conserved RNA structure. (2004) (45)
On the number of ancestors to a DNA sequence. (1997) (45)
Simultaneous Bayesian estimation of alignment and phylogeny under a joint model of protein sequence and structure. (2014) (44)
Combining many multiple alignments in one improved alignment (1999) (43)
Combining statistical alignment and phylogenetic footprinting to detect regulatory elements (2008) (41)
Applying the Thorne-Kishino-Felsenstein model to sequence evolution on a star-shaped tree (2001) (40)
Recursions for statistical multiple alignment (2003) (39)
BigFoot: Bayesian alignment and phylogenetic footprinting with MCMC (2009) (35)
GIBBS SAMPLER FOR STATISTICAL MULTIPLE ALIGNMENT (2005) (32)
Dynamic and Physical Clustering of Gene Expression during Epidermal Barrier Formation in Differentiating Keratinocytes (2009) (32)
Reconstructing pedigrees: a combinatorial perspective. (2006) (31)
Evolving stochastic context--free grammars for RNA secondary structure prediction (2012) (30)
A stochastic model for the evolution of metabolic networks with neighbor dependence (2009) (30)
Comparison of Coding DNA (1998) (29)
Stochastic models of sequence evolution including insertion—deletion events (2009) (28)
A maximum-likelihood approach to analyzing nonoverlapping and overlapping reading frames (1995) (27)
Dynamics based alignment of proteins: an alternative approach to quantify dynamic similarity (2010) (26)
Bayesian Phylogenetic Inference under a Statistical Insertion-Deletion Model (2003) (26)
Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs (2015) (24)
Ongoing Recombination in SARS-CoV-2 Revealed through Genealogical Reconstruction (2021) (23)
Reticular alignment: A progressive corner-cutting method for multiple sequence alignment (2010) (21)
Phylogenetic Analysis Reveals That ERVs "Die Young" but HERV-H Is Unusually Conserved (2016) (20)
A Bayesian Approach to the Evolution of Metabolic Networks on a Phylogeny (2010) (19)
An investigation into irreducible autocatalytic sets and power law distributed catalysis (2014) (17)
Annotation of selection strengths in viral genomes (2007) (16)
Genome Rearrangement in Mitochondria and Its Computational Biology (2004) (16)
Counting All Possible Ancestral Configurations of Sample Sequences in Population Genetics (2006) (16)
Using hidden Markov models and observed evolution to annotate viral genomes (2006) (16)
A Generative Angular Model of Protein Structure Evolution (2016) (15)
A Large Version of the Small Parsimony Problem (2003) (15)
Genomic Rearrangements in Arabidopsis Considered as Quantitative Traits (2017) (15)
On Recombination-Induced Multiple and Simultaneous Coalescent Events (2007) (15)
Discussion: Recent Common Ancestors of all Present-Day Individuals (1999) (14)
How reliably can we predict the reliability of protein structure predictions? (2008) (13)
The Icelandic Cancer Project – a population-wide approach to studying cancer (2004) (13)
StatAlign 2.0: combining statistical alignment with RNA secondary structure prediction (2013) (13)
An analysis of structural influences on selection in RNA genes. (2008) (13)
A tree · a window · a hill; generalization of nearest-neighbor interchange in phylogenetic optimization (1994) (12)
Orthologous endogenous retroviruses exhibit directional selection since the chimp-human split (2015) (12)
The Exaptation of HERV-H: Evolutionary Analyses Reveal the Genomic Features of Highly Transcribed Elements (2019) (11)
Accurate Computation of Likelihoods in the Coalescent with Recombination Via Parsimony (2008) (11)
Coalescent Inference Using Serially Sampled, High-Throughput Sequencing Data from Intrahost HIV Infection (2015) (11)
GeneRecon - a coalescent based tool for fine-scale association mapping (2006) (10)
ParIS Genome Rearrangement server (2005) (10)
Oxfold: kinetic folding of RNA using stochastic context-free grammars and evolutionary information (2013) (10)
Quantifying variances in comparative RNA secondary structure prediction (2013) (10)
Investigating selection on viruses: a statistical alignment approach (2008) (9)
Human evolution: Pedigrees for all humanity (2004) (9)
Comparative annotation of viral genomes with non-conserved gene structure (2007) (9)
KwARG: parsimonious reconstruction of ancestral recombination graphs with recurrent mutation (2020) (8)
Genomic alignment (2004) (8)
A Simulation‐Based Approach to Statistical Alignment (2018) (7)
Genome-wide functional element detection using pairwise statistical alignment outperforms multiple genome footprinting techniques (2010) (7)
Erratum: The Cardamine hirsuta genome offers insight into the evolution of morphological diversity (2016) (6)
Tree measures and the number of segregating sites in time-structured population samples (2005) (6)
Evolutionary Analyses of Base-Pairing Interactions in DNA and RNA Secondary Structures (2019) (5)
Evolution of Metabolic Networks (2006) (5)
How Many Transcripts Does It Take to Reconstruct the Splice Graph? (2006) (4)
Pleiotropic constraints promote the evolution of cooperation in cellular groups (2022) (4)
Genomic Rearrangements Considered as Quantitative Traits (2016) (4)
Stochastic Turing Patterns (2006) (4)
A characterisation of the reconstructed birth-death process through time rescaling. (2019) (4)
Identifying Gene Clusters and Regulatory Themes using Time Course Expression Data , Hidden Markov Models and Transcription Factor Information (2004) (2)
On the Complexity of Comparing Evolutionary Trees (Extended Abstract) (1995) (2)
Reconstructing the ancestral germ line methylation state of young repeats. (2011) (2)
Search for Life in Catalytic Reaction Systems (2010) (2)
Sex-specific aspects of endogenous retroviral insertion and deletion (2013) (2)
University of Oxford Department of Statistics Summer Project MCMC and the Infinite Sites Model (2009) (1)
INVESTIGATION OF ONGOING RECOMBINATION THROUGH GENEALOGICAL RECONSTRUCTION FOR SARS-CoV-2 (2021) (1)
Quantifying variances in comparative RNA secondary structure prediction (2013) (1)
genomic sequence alignment Uncertainty in homology inferences : Assessing and improving data (2008) (1)
Toroidal Diffusions and Protein Structure Evolution (2018) (1)
Complexity results for autocatalytic network models. (2020) (1)
Comparing Phylogeographies: Incompatible Geographical Histories in Pathogens’ Genomes (2020) (1)
Recoverability of Ancestral Recombination Graph Topologies (2021) (1)
RNA Secondary Structures (2010) (1)
Sex-specific aspects of endogenous retroviral insertion and deletion (2013) (1)
Approximate statistical alignment by iterative sampling of substitution matrices (2015) (1)
Detecting interacting genetic loci with effects on quantitative traits where the nature and order of the interaction are unknown (2010) (1)
Combinatorial pattern matching : 8th Annual Symposium, CPM 97, Aarhus, Denmark, June 30-July 2, 1997 : proceedings (1997) (1)
Frnakenstein: multiple target inverse RNA folding (2012) (1)
Integrative Genomics and Functional Explanation (2009) (1)
The Cardamine hirsuta genome highlights the pervasive role of transcription factors and tandem gene duplications in generating morphological diversity (2016) (1)
Systematic inference of regulation by protein kinases finds surprising level of transcription factor deactivation (2021) (0)
Reconstruction of Ancestral Metabolisms (2009) (0)
Professor Jotun Hein – Case for Support (2008) (0)
The TPS algorithm & the Evolutionary Path of Protein Structures (0)
Modelling Leaf Shape Evolution (2011) (0)
Genome annotation and selectional analysis of viral evolution (2008) (0)
Algorithms for Haplotype Inference In the Presence of Recombination (2006) (0)
Identifiability of a simple biological system (0)
A Novel Automated Screening Method for Combinatorially Generated Small Molecules (2021) (0)
Ancestral Reconstruction for Association Mapping (2010) (0)
Professor Jotun Hein " Comparative Virus Annotation " (2005) (0)
Combinatorial results for network-based models of metabolic origins (2019) (0)
Case for Support Epsrc Grant Application November 2006 " Engineering Systems Biology of the Cell Cycle " Part I: Previous Research Track Record (2008) (0)
Ancestral protein sequence reconstruction using a tree-structured Ornstein-Uhlenbeck variational autoencoder (2022) (0)
Probabilistic models of RNA secondary structure (2013) (0)
Protein Similarity Derived Solely from Molecular Dynamics (2010) (0)
Orthologous endogenous retroviruses exhibit directional selection since the chimp-human split (2015) (0)
Evolving stochastic context-free grammars for RNA secondary structure prediction (2012) (0)
A Novel Automated Screening Method For Combinatorial Small Molecules (2020) (0)
An optimal algorithm to reconstruct trees from additive distance data (1989) (0)
From Global Studies of Biological Variation towards Functional Explanations of Phenotype (2008) (0)
Combinatorics of Polymer-Based Models of Early Metabolism (2021) (0)
The impact of COVID-19 certification mandates on the number of cases of and hospitalizations with COVID-19 in the UK: A difference-in-differences analysis (2023) (0)
MCMC Network: Graphical Interface for Bayesian Analysis of Metabolic Networks (2010) (0)
RNA, SCFGs and Classifiers (2009) (0)
Algorithms for Statistical Multiple Alignment (2003) (0)
Integrative Analysis of the Genetic Factors behind Asthma and Atopic Dermatitis ” Part I : Previous Research Track Record (2008) (0)
Efficient representation of uncertainty in multiple sequence alignments using directed acyclic graphs (2015) (0)
Multiple sequence analysis in the presence of alignment uncertainty (2014) (0)
Comparison of Parallel Solution Techniques for the Eikonal Equation (2013) (0)
Evolutionary analysis of base-pairing interactions in DNA and RNA secondary structures (2018) (0)
Phylogenetics. - Charles Semple and Mike Steel. 2003. Oxford University Press, New York. xiii + 239 pp. ISBN 0-19-850942-1. $90.00. (2004) (0)
Combinatorics of polymer models of early metabolism (2021) (0)
Technical Report : An n-free-passes CYK algorithm for error-correction and the prediction of non-canonical base-pairs in RNA secondary structure (2013) (0)
Integrating prior knowledge to reverse-engineer simple biological systems Short-Project Report (2008) (0)
MCMC Integration over Evolutionary Histories of Metabolic Networks (2008) (0)
Algorithms for Haplotype Inference from Genotypes in the Presence of Recombination (2006) (0)
Comparison of oding (2007) (0)
Professor Jotun Hein and Professor David Stuart Case for Support Bbsrc Grant Application April 2005 " Statistical Models of Protein Structure Evolution " Background (0)
Computational Cell Biology (2003) (0)
Comparative Analysis of Nitrogen Assimilation Pathways in Pseudomonas using Hypergraphs (2007) (0)
Aligning Covariance Models (2009) (0)
Inference of Structure, Function and Motion of an Ancestral Protein (2011) (0)
On weak circular squares in binary words (1997) (0)
Correlated alignment ( CorAl ) : simultaneous multiple sequence alignment and inference of networks of coevolving residues Computational prediction of protein structural interaction networks (2011) (0)
Improved Bayesian Phylogenetic Inference in a Statistical Alignment Framework (2011) (0)
Systematic inference of indirect transcriptional regulation by protein kinases and phosphatases (2022) (0)
Population Pedigree Inference from Genomic Data (0)
An evolutionary algorithm for stochastic context-free grammar design , with applications to RNA secondary structure prediction (2011) (0)
The Structure of the Computational Biosciences (2007) (0)
Genealogical and Genetic Ancestry for K Loci (2011) (0)
Molecular evolution of selected families of human endogenous retroviruses (2011) (0)

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What Schools Are Affiliated With Jotun Hein?

Jotun Hein is affiliated with the following schools: