Judith Blake
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Computational biologist
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Computer Science Biology
Judith Blake 's Degrees
- PhD Computational Biology University of California, Berkeley
- Masters Bioinformatics Stanford University
- Bachelors Biology University of California, Berkeley
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Why Is Judith Blake Influential?
(Suggest an Edit or Addition)According to Wikipedia, Judith Anne Blake is a computational biologist at the Jackson Laboratory and Professor of Mammalian Genetics. Education Blake completed her Bachelor of Arts degree in Biology in 1974 at the University of Connecticut. She moved to Harvard University for postgraduate study where she was awarded a Master of Arts degree in 1978 followed by a PhD in 1981. Her PhD investigated chromosomal variation in the Jamaican lizard Anolis grahami and was supervised by Ernest Edward Williams.
Judith Blake 's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Gene Ontology: tool for the unification of biology (2000) (34828)
- Gene Ontology Consortium: The Gene Ontology (GO) database and informatics resource (2004) (2444)
- Gene Ontology Consortium: going forward (2014) (2293)
- A promoter-level mammalian expression atlas (2014) (1664)
- Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs (2002) (1543)
- The Gene Ontology resource: enriching a GOld mine (2020) (1508)
- The Gene Ontology Resource: 20 years and still GOing strong (2019) (1467)
- Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii (1996) (1149)
- Creating the gene ontology resource: design and implementation. (2001) (1128)
- The Gene Ontology project in 2008 (2007) (741)
- Functional annotation of a full-length mouse cDNA collection (2001) (682)
- Gene Ontology Annotations and Resources (2012) (503)
- Mouse Genome Database (MGD) 2019 (2018) (491)
- The Gene Ontology in 2010: extensions and refinements (2009) (449)
- The Mouse Genome Database (MGD): mouse biology and model systems (2007) (439)
- The Gene Ontology Consortium (2000) (419)
- The Mouse Genome Database (MGD): facilitating mouse as a model for human biology and disease (2014) (370)
- The Mouse Genome Database (MGD): from genes to mice—a community resource for mouse biology (2004) (289)
- Finding Our Way through Phenotypes (2015) (284)
- The Mouse Genome Database (MGD): premier model organism resource for mammalian genomics and genetics (2010) (269)
- Mouse Genome Database (MGD)-2017: community knowledge resource for the laboratory mouse (2016) (262)
- The Mouse Genome Database (MGD): comprehensive resource for genetics and genomics of the laboratory mouse (2011) (261)
- A critical assessment of Mus musculus gene function prediction using integrated genomic evidence (2008) (261)
- MGD: the Mouse Genome Database (2003) (254)
- Concept annotation in the CRAFT corpus (2012) (253)
- The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse (2013) (229)
- The Gene Ontology: enhancements for 2011 (2011) (211)
- Mouse Genome Database (MGD)-2018: knowledgebase for the laboratory mouse (2017) (203)
- Pax genes: regulators of lineage specification and progenitor cell maintenance (2014) (173)
- The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability (2016) (168)
- RNAcentral: a hub of information for non-coding RNA sequences (2018) (164)
- Gene Ontology annotations: what they mean and where they come from (2008) (164)
- Beyond the data deluge: Data integration and bio-ontologies (2006) (148)
- The Gene Ontology's Reference Genome Project: A Unified Framework for Functional Annotation across Species (2009) (147)
- The Protein Ontology: a structured representation of protein forms and complexes (2010) (143)
- Logical Development of the Cell Ontology (2011) (141)
- Systems biology of the 2-cell mouse embryo (2004) (131)
- The Mouse Genome Database (MGD): expanding genetic and genomic resources for the laboratory mouse (2000) (126)
- The mouse genome database (MGD): new features facilitating a model system (2006) (119)
- Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon (2014) (118)
- A short study on the success of the Gene Ontology (2004) (114)
- The Gene Ontology (GO) Project: Structured Vocabularies for Molecular Biology and Their Application to Genome and Expression Analysis (2008) (114)
- Alliance of Genome Resources Portal: unified model organism research platform (2019) (113)
- The Mouse Genome Database genotypes::phenotypes (2008) (112)
- The Mouse Genome Database (MGD): the model organism database for the laboratory mouse (2002) (110)
- Framework for a Protein Ontology (2006) (109)
- Text mining for biology - the way forward: opinions from leading scientists (2008) (109)
- Extension and integration of the gene ontology (GO): combining GO vocabularies with external vocabularies. (2002) (107)
- Standardized description of scientific evidence using the Evidence Ontology (ECO) (2014) (107)
- On the Use of Gene Ontology Annotations to Assess Functional Similarity among Orthologs and Paralogs: A Short Report (2012) (102)
- Biological Nomenclatures: A Source of Lexical Knowledge and Ambiguity (2003) (100)
- A molecular phylogeny of the bivalve mollusks. (1997) (97)
- The Mouse Genome Database (MGD): updates and enhancements (2005) (95)
- Mouse genome database 2016 (2015) (91)
- GlyGen: Computational and Informatics Resources for Glycoscience. (2020) (88)
- A method for increasing expressivity of Gene Ontology annotations using a compositional approach (2014) (83)
- Functional co-expression of CYP2D6 and human NADPH-cytochrome P450 reductase in Escherichia coli. (1998) (82)
- The Mouse Genome Database (MGD): integrating biology with the genome (2004) (80)
- The Mouse Genome Database (MGD): integration nexus for the laboratory mouse (2001) (80)
- Phylogeny and relationships of pleurotomariid gastropods (Mollusca: Gastropoda): an assessment based on partial 18S rDNA and cytochrome c oxidase I sequences. (1997) (75)
- The Mouse Genome Database: enhancements and updates (2009) (75)
- Protein Ontology: a controlled structured network of protein entities (2013) (75)
- Mouse Genome Database (2000) (74)
- Bio-ontologies—fast and furious (2004) (73)
- Towards BioDBcore: a community-defined information specification for biological databases (2011) (71)
- The mouse Gene Expression Database (GXD): updates and enhancements (2004) (70)
- Mouse Genome Informatics (MGI): Resources for Mining Mouse Genetic, Genomic, and Biological Data in Support of Primary and Translational Research. (2017) (70)
- The Mouse Genome Database: Genotypes, Phenotypes, and Models of Human Disease (2012) (68)
- Integrating text mining into the MGI biocuration workflow (2009) (67)
- The Mouse Genome Database (MGD): genetic and genomic information about the laboratory mouse. The Mouse Genome Database Group (1999) (66)
- Protein Ontology (PRO): enhancing and scaling up the representation of protein entities (2016) (63)
- Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort (2013) (61)
- A procedure for assessing GO annotation consistency (2005) (60)
- Providing the Missing Link: the Exposure Science Ontology ExO (2012) (59)
- The Mouse Genome Database (MGD). A comprehensive public resource of genetic, phenotypic and genomic data. The Mouse Genome Informatics Group (1997) (58)
- Mouse Genome Database (MGD): Knowledgebase for mouse–human comparative biology (2020) (57)
- Towards BioDBcore: a community-defined information specification for biological databases (2010) (57)
- Ontology development for biological systems: immunology (2007) (57)
- Program description: Strategies for biological annotation of mammalian systems: implementing gene ontologies in mouse genome informatics. (2001) (55)
- Cisplatin-resistant triple-negative breast cancer subtypes: multiple mechanisms of resistance (2019) (51)
- Ten Quick Tips for Using the Gene Ontology (2013) (47)
- Neogastropod Phylogeny: A Molecular Perspective (1997) (46)
- Perplexing Pax: From puzzle to paradigm (2008) (44)
- The Gene Ontology (GO) Project: Structured Vocabularies for Molecular Biology and Their Application to Genome and Expression Analysis (2003) (43)
- Pax3 transcripts in melanoblast development (2005) (42)
- Hematopoietic cell types: Prototype for a revised cell ontology (2009) (41)
- PhenoGO: an integrated resource for the multiscale mining of clinical and biological data (2009) (36)
- Rules and guidelines for mouse gene nomenclature: a condensed version. International Committee on Standardized Genetic Nomenclature for Mice. (1997) (35)
- OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data (2016) (33)
- Mouse Genome Informatics (MGI): reflecting on 25 years (2015) (33)
- Aberrant PAX3 and PAX7 expression. A link to the metastatic potential of embryonal rhabdomyosarcoma and cutaneous malignant melanoma? (2003) (32)
- The Mouse Genome Database (MGD): a community resource. Status and enhancements. The Mouse Genome Informatics Group (1998) (32)
- Rules and guidelines for mouse gene, allele, and mutation nomenclature: a condensed version. (2002) (32)
- Access to immunology through the Gene Ontology (2008) (32)
- Model organism data evolving in support of translational medicine (2018) (31)
- Gearing up to handle the mosaic nature of life in the quest for orthologs (2017) (31)
- Corrigendum: ''RNAcentral : a hub of information for non-coding RNA sequences'' [Nucleic acids research, 47 (2019) D1, p. D221-D229] (2019) (30)
- Mouse Genome Informatics (MGI) Resources for Pathology and Toxicology (2007) (28)
- The Gene Ontology’s Reference Genome Project: A Unified Framework for Functional Annotation across Species (2009) (26)
- Investigation of COVID-19 comorbidities reveals genes and pathways coincident with the SARS-CoV-2 viral disease (2020) (25)
- An en masse phenotype and function prediction system for Mus musculus (2008) (24)
- Harmonizing model organism data in the Alliance of Genome Resources (2022) (24)
- Improving Interpretation of Cardiac Phenotypes and Enhancing Discovery With Expanded Knowledge in the Gene Ontology (2018) (23)
- The Alliance of Genome Resources: Building a Modern Data Ecosystem for Model Organism Databases (2019) (22)
- Informatics for mouse genetics and genome mapping. (1998) (22)
- Manual Gene Ontology annotation workflow at the Mouse Genome Informatics Database (2012) (22)
- DFLAT: functional annotation for human development (2014) (22)
- OMIT: Dynamic, Semi-Automated Ontology Development for the microRNA Domain (2014) (21)
- The representation of protein complexes in the Protein Ontology (PRO) (2011) (21)
- Connecting sequence and biology in the laboratory mouse. (2003) (20)
- Mouse genome informatics in a new age of biological inquiry (2000) (20)
- Supplementary data need to be kept in public repositories (2005) (20)
- Integration of Mouse Phenome Data Resources (2008) (19)
- Autism candidate genes via mouse phenomics (2011) (18)
- Representing Kidney Development Using the Gene Ontology (2014) (17)
- TOWARDS COORDINATED INTERNATIONAL SUPPORT OF CORE DATA RESOURCES FOR THE LIFE SCIENCES (2017) (16)
- Mouse Genome Database: From sequence to phenotypes and disease models (2015) (16)
- Ontological visualization of protein-protein interactions (2005) (15)
- Corralling conditional mutations: A unified resource for mouse phenotypes (2002) (15)
- RNAcentral: a hub of information for non-coding RNA sequences (2018) (14)
- Ontology based molecular signatures for immune cell types via gene expression analysis (2013) (14)
- A report on the International Nomenclature Workshop held May 1997 at the Jackson Laboratory, Bar Harbor, Maine, U.S.A. (1997) (13)
- TGF-beta signaling proteins and the Protein Ontology (2009) (13)
- Disease model curation improvements at Mouse Genome Informatics (2012) (13)
- Ten Years of Collaborative Progress in the Quest for Orthologs (2021) (12)
- A semantic approach for knowledge capture of MIcroRNA-Target gene interactions (2015) (12)
- Investigation of COVID-19 comorbidities reveals genes and pathways coincident with the SARS-CoV-2 viral disease. (2020) (12)
- Recent advances in biocuration: Meeting Report from the fifth International Biocuration Conference (2012) (12)
- Gene regulation knowledge commons: community action takes care of DNA binding transcription factors (2016) (11)
- Reactome and the Gene Ontology: digital convergence of data resources (2021) (11)
- An effective biomedical document classification scheme in support of biocuration: addressing class imbalance (2019) (11)
- Gene Ontology: a controlled vocabulary to describe the function, biological process and cellular location of gene products in genome databases (1999) (11)
- The development of non-coding RNA ontology (2016) (11)
- Mouse Genome Informatics (MGI): latest news from MGD and GXD (2021) (11)
- The Characterisation of Pax3 Expressant Cells in Adult Peripheral Nerve (2013) (10)
- Modeling biochemical pathways in the gene ontology (2016) (10)
- The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology (2016) (10)
- Application of comparative biology in GO functional annotation: the mouse model (2015) (10)
- Orthology for comparative genomics in the mouse genome database (2015) (10)
- Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD) (2017) (10)
- Human disease genes and their cloned mouse orthologs: exploration of the FANTOM2 cDNA sequence data set. (2003) (10)
- Ontology engineering (2010) (9)
- A Resource of Quantitative Functional Annotation for Homo sapiens Genes (2012) (8)
- Using Ontology Visualization to Coordinate Cross-species Functional Annotation for Human Disease Genes (2006) (8)
- A Natural Language Processing (NLP) Tool to Assist in the Curation Of the Laboratory Mouse Tumor Biology Database (2006) (7)
- Mouse phenotype database integration consortium: Integration of mouse phenome data resources (vol 18, pg 157, 2007) (2007) (7)
- Mouse Genome Informatics: Mapping/Homology Data (2002) (7)
- An ontology-based MicroRNA knowledge sharing and acquisition framework (2012) (7)
- Report of the second international nomenclature workshop (1999) (7)
- Building the Scientific Knowledge Mine (SciKnowMine): a community-driven framework for text mining t (2010) (6)
- Report of the Second International Nomenclature Workshop. Cambridge, United Kingdom, May 1-2, 1999. (1999) (6)
- Integrating image caption information into biomedical document classification in support of biocuration (2020) (5)
- Sensing the cilium, digital capture of ciliary data for comparative genomics investigations (2018) (5)
- The impact of rapid gene discovery technology on studies of evolution and biodiversity. (1997) (5)
- Using ontology visualization to facilitate access to knowledge about human disease genes (2009) (5)
- Using ontology visualization to understand annotations and reason about them (2006) (5)
- Automated Annotation-Based Bio-Ontology Alignment with Structural Validation (2009) (4)
- 1-8-2019 Mouse Genome Database ( MGD ) 2019 (2019) (4)
- Aberrant PAX 3 and PAX 7 expression . A link to the metastatic potential of embryonal rhabdomyosarcoma and cutaneous malignant melanoma ? (2003) (4)
- Interoperability of Biological Data Bases: A Meeting Report (1994) (4)
- Similarity Between Semantic Description Sets: Addressing Needs Beyond Data Integration (2011) (4)
- Force 11 White Paper : Improving The Future of Research Communications and e-Scholarship February (2012) (4)
- Curating gene sets: challenges and opportunities for integrative analysis (2019) (4)
- Occurrence of Gene Ontology , Protein Ontology , and NCBI Taxonomy Concepts in Text toward Automatic Gene Ontology Annotation of Genes and Gene Products (2013) (3)
- Triage with the SciKnowMine System in the Mouse Genome Informatics ( MGI ) Curation Process (2013) (3)
- Using gene ontology to study branching morphogenesis in mice (2009) (2)
- P4-S The Mouse Genome Informatics Database: An Integrated Resource for Mouse Genetics and Genomics. (2007) (2)
- Integration of Mouse Phenome Data Resources The Mouse Phenotype Database Integration Consortium * (2007) (2)
- Computing on development (2007) (2)
- A domain ontology for the Non-Coding RNA field (2015) (2)
- New Challenges For NLP Frameworks Programme (2010) (2)
- The Constrained Maximal Expression Level Owing to Haploidy Shapes Gene Content on the Mammalian X Chromosome (2015) (2)
- Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (2021) (2)
- The Mouse Genome Database and The Gene Expression Database: Genotype to Phenotype (2002) (2)
- Methodology for the inference of gene function from phenotype data (2014) (2)
- Waiting for a Robust Disease Ontology: A Merger of OMIM and MeSH as a Practical Interim Solution (2011) (2)
- Data integration in the mouse genome informatics (MGI) database (2005) (2)
- A method for increasing expressivity of Gene Ontology annotations using a compositional approach (2014) (1)
- Faculty Opinions recommendation of Modified penetrance of coding variants by cis-regulatory variation contributes to disease risk. (2019) (1)
- Homeodomain proteins in mice and plants: What we know and what we don't (2008) (1)
- Using bio-ontologies as data annotation, integration & analytical tools at the Mouse Genome Informatics resource (2008) (1)
- Functional Annotation of Protein Isoforms and Modified Forms (2008) (1)
- Ontology based molecular signatures for immune cell types via gene expression analysis (2013) (1)
- Comprehensive gene ontology annotation of ciliary genes in the laboratory mouse (2017) (1)
- Faculty Opinions recommendation of Patient-Derived Organoids Predict Chemoradiation Responses of Locally Advanced Rectal Cancer. (2019) (1)
- Unification of multi-species vertebrate anatomy ontologies for comparative biology in Uberon (2014) (1)
- Using Ontology Graphs to Understand Annotations and Reason about Them (2006) (1)
- Mouse Genome Informatics (MGI): reflecting on 25 years (2015) (1)
- [1] Equipping and organizing comparative molecular genetics laboratories (1993) (1)
- The 15th Genomic Standards Consortium meeting (2013) (1)
- DFLAT: functional annotation for human development (2014) (1)
- Orthology for comparative genomics in the mouse genome database (2015) (1)
- From sipping on a straw to drinking from a fire hose: data integration in a public genome database (2004) (1)
- The mouse genome database: a resource for today and tomorrow. (2000) (1)
- ExO: An Ontology for Exposure Science (2011) (1)
- Concept annotation in the CRAFT corpus (2012) (1)
- Genome in Development and Cloning (2004) (0)
- BIOMOLECULAR NETWORKS: FROM ANALYSIS TO SYNTHESIS – SESSION INTRODUCTION (2008) (0)
- Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (2022) (0)
- 15. Genomics and Conservation Genetics (2009) (0)
- Faculty Opinions recommendation of SparkINFERNO: A scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants. (2020) (0)
- A simplified method for creating a cell cycle ontology for the laboratory mouse (2012) (0)
- Mouse and rat genome informatics. (2003) (0)
- Contents Vol. 105, 2004 (2004) (0)
- Functional annotation of proteoforms in the mouse genome database using the protein ontology (2017) (0)
- A Special Section of Reviews From the 2nd Conference on Standards and Ontologies for Functional Genomics (SOFG) (2004) (0)
- OmniSearch: a semantic search system based on the Ontology for MIcroRNA Target (OMIT) for microRNA-target gene interaction data (2016) (0)
- GO Content Meeting Nov 15-16 2005 The Institute for Genomic Research , Rockville , MD Attendees (0)
- Equipping and organizing comparative molecular genetics laboratories. (1993) (0)
- One Source for Comprehensive Data for Mouse Biology: The Mouse Genome Informatics (MGI) Resource. (2009) (0)
- A flip trap screen reveals a novel transcript in the HoxB genomic region (2009) (0)
- Application of comparative biology in GO functional annotation: the mouse model (2015) (0)
- Faculty Opinions recommendation of Quantitative analysis of proteins which are members of the same protein complex but cause locus heterogeneity in disease. (2020) (0)
- Databases for Use in Molecular Biology: Concepts in their Design, Access and Use (1998) (0)
- Faculty Opinions recommendation of An integrative tissue-network approach to identify and test human disease genes. (2019) (0)
- The Gene Ontology knowledgebase in 2023 (2023) (0)
- Faculty Opinions recommendation of The virtuous cycle of human genetics and mouse models in drug discovery. (2019) (0)
- Equipping and organizing a molecular systematics laboratory (1993) (0)
- Gene Ontology Signatures for Immune Cell-Types Inferred by Gene Expression Analysis (2011) (0)
- Faculty Opinions recommendation of Lethal infection of K18-hACE2 mice infected with severe acute respiratory syndrome coronavirus. (2020) (0)
- Databases and ontologies Ontology development for biological systems : immunology (2007) (0)
- Protein-Centric Connection of Biomedical Knowledge: Protein Ontology (PRO) Research and Annotation Tools (2011) (0)
- Mouse Genome Informatics (MGI): The Ever‐Expanding Resource (2007) (0)
- FACILITATING REPRODUCTIVE RESEARCH WITH THE ONLINE MOUSE GENOME INFORMATICS RESOURCES (2007) (0)
- Faculty Opinions recommendation of tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine. (2018) (0)
- BIOMOLECULAR NETWORKS: FROM ANALYSIS TO SYNTHESIS (2009) (0)
- Methodology for the inference of gene function from phenotype data (2014) (0)
- Effective biomedical document classification for identifying publications relevant to the mouse Gene Expression Database (GXD) (2020) (0)
- The Non-Coding RNA Ontology (NCRO): a comprehensive resource for the unification of non-coding RNA biology (2016) (0)
- Increased expressivity of mouse protein function representation using the gene ontology (2013) (0)
- Model organism data evolving in support of translational medicine (2018) (0)
- The Cell Ontology 2016: enhanced content, modularization, and ontology interoperability (2016) (0)
- Using Biomedical Ontologies for Data Representation and Management in the Mouse Genome Informatics (MGI) System (2012) (0)
- Faculty Opinions recommendation of A Compendium of Co-regulated Protein Complexes in Breast Cancer Reveals Collateral Loss Events. (2018) (0)
- Finding Our Way Through Phenotypes (2019) (0)
- Faculty Opinions recommendation of Co-regulatory networks of human serum proteins link genetics to disease. (2018) (0)
- Databases and ontologies Reactome and the Gene Ontology: Digital con-vergence of data resources (2021) (0)
- Perspective Finding Our Way through Phenotypes (2014) (0)
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Judith Blake is affiliated with the following schools:
