Jukka Corander

Q: What Schools Are Affiliated With Jukka Corander

Jukka Corander is affiliated with the following schools: Åbo Akademi University, University of Helsinki, University of Oslo, Stockholm University, University of Oxford

Jukka Corander's AcademicInfluence.com Rankings

Jukka Corander

Mathematics

#6627

World Rank

#9144

Historical Rank

Statistics

#646

World Rank

#730

Historical Rank

Measure Theory

#1474

World Rank

#1844

Historical Rank

mathematics Degrees

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Mathematics

Jukka Corander's Degrees

PhD Statistics University of Helsinki
Masters Mathematics University of Helsinki
Bachelors Mathematics University of Helsinki

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Jukka Corander's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Bayesian analysis of genetic differentiation between populations. (2003) (846)
The fecal microbiota of irritable bowel syndrome patients differs significantly from that of healthy subjects. (2007) (844)
Enhanced Bayesian modelling in BAPS software for learning genetic structures of populations (2008) (803)
Bayesian identification of admixture events using multilocus molecular markers (2006) (633)
Hierarchical and Spatially Explicit Clustering of DNA Sequences with BAPS Software (2013) (481)
BAPS 2: enhanced possibilities for the analysis of genetic population structure (2004) (470)
Evolution and transmission of drug resistant tuberculosis in a Russian population (2014) (409)
Bayesian spatial modeling of genetic population structure (2008) (403)
CYP2D6 worldwide genetic variation shows high frequency of altered activity variants and no continental structure (2007) (390)
Dense genomic sampling identifies highways of pneumococcal recombination (2014) (342)
Emergence of Epidemic Multidrug-Resistant Enterococcus faecium from Animal and Commensal Strains (2013) (320)
Approximate Bayesian Computation (2013) (318)
Bayesian Optimization for Likelihood-Free Inference of Simulator-Based Statistical Models (2015) (250)
Producing polished prokaryotic pangenomes with the Panaroo pipeline (2020) (236)
Bayesian analysis of population structure based on linked molecular information. (2007) (232)
Global Emergence and Dissemination of Enterococci as Nosocomial Pathogens: Attack of the Clones? (2016) (224)
Detection of recombination events in bacterial genomes from large population samples (2011) (200)
Fundamentals and Recent Developments in Approximate Bayesian Computation (2016) (199)
Core Genome Multilocus Sequence Typing Scheme for High-Resolution Typing of Enterococcus faecium (2015) (194)
Restricted Gene Flow among Hospital Subpopulations of Enterococcus faecium (2012) (186)
Patterns of genome evolution that have accompanied host adaptation in Salmonella (2014) (184)
Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131 (2017) (183)
Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution (2014) (177)
Hyper-Recombination, Diversity, and Antibiotic Resistance in Pneumococcus (2009) (174)
Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe (2016) (173)
Fast and flexible bacterial genomic epidemiology with PopPUNK (2018) (171)
In defence of model‐based inference in phylogeography (2010) (170)
Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes (2016) (162)
Combined Analysis of Variation in Core, Accessory and Regulatory Genome Regions Provides a Super-Resolution View into the Evolution of Bacterial Populations (2016) (162)
Novel staphylococcal species that form part of a Staphylococcus aureus-related complex: the non-pigmented Staphylococcus argenteus sp. nov. and the non-human primate-associated Staphylococcus schweitzeri sp. nov. (2015) (158)
Genetic diversity of cultivated flax (Linum usitatissimum L.) germplasm assessed by retrotransposon-based markers (2011) (151)
Acinetobacter species in the skin microbiota protect against allergic sensitization and inflammation. (2014) (146)
Parallel independent evolution of pathogenicity within the genus Yersinia (2014) (145)
Model choice in gene mapping: what and why. (2002) (130)
RhierBAPS: An R implementation of the population clustering algorithm hierBAPS (2018) (130)
Gene exchange drives the ecological success of a multi-host bacterial pathogen (2018) (123)
Cryptic ecology among host generalist Campylobacter jejuni in domestic animals (2014) (121)
Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis (2015) (121)
Implications of a circulating vaccine-derived poliovirus in Nigeria. (2010) (120)
Likelihood-free inference via classification (2014) (118)
High degree of cryptic population differentiation in the Baltic Sea herring Clupea harengus (2013) (116)
pyseer: a comprehensive tool for microbial pangenome-wide association studies (2018) (116)
Phylogeny, phylogeography and genetic diversity of the Pisum genus (2010) (115)
Recombination is a key driver of genomic and phenotypic diversity in a Pseudomonas aeruginosa population during cystic fibrosis infection (2015) (114)
Identifying Currents in the Gene Pool for Bacterial Populations Using an Integrative Approach (2009) (114)
Ecological Overlap and Horizontal Gene Transfer in Staphylococcus aureus and Staphylococcus epidermidis (2015) (113)
Efficient Inference of Recent and Ancestral Recombination within Bacterial Populations (2017) (112)
Fast hierarchical Bayesian analysis of population structure (2018) (111)
International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact (2019) (110)
Global and regional dissemination and evolution of Burkholderia pseudomallei (2017) (110)
Likelihood-Free Inference by Ratio Estimation (2016) (108)
Frequency-dependent selection in vaccine-associated pneumococcal population dynamics (2017) (107)
Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus (2012) (104)
mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species (2018) (103)
Genetic diversity and population structure of pea (Pisum sativum L.) varieties derived from combined retrotransposon, microsatellite and morphological marker analysis (2008) (100)
Transcriptome Remodeling Contributes to Epidemic Disease Caused by the Human Pathogen Streptococcus pyogenes (2016) (94)
Layered adaptive importance sampling (2015) (93)
Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis (2018) (92)
Multilocus sequence types of Finnish bovine Campylobacter jejuni isolates and their attribution to human infections (2010) (90)
Genetic spatial structure in a butterfly metapopulation correlates better with past than present demographic structure (2008) (86)
Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis (2016) (83)
Bayesian inference of atomistic structure in functional materials (2017) (81)
Recent Recombination Events in the Core Genome Are Associated with Adaptive Evolution in Enterococcus faecium (2013) (77)
Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis (2016) (74)
An Adaptive Population Importance Sampler: Learning From Uncertainty (2015) (72)
Population Biology of Intestinal Enterococcus Isolates from Hospitalized and Nonhospitalized Individuals in Different Age Groups (2014) (70)
Diversification of Colonization Factors in a Multidrug-Resistant Escherichia coli Lineage Evolving under Negative Frequency-Dependent Selection (2019) (69)
Orthogonal parallel MCMC methods for sampling and optimization (2015) (68)
The impact of antimicrobials on gonococcal evolution (2019) (67)
Transfer of noncoding DNA drives regulatory rewiring in bacteria (2014) (66)
COEXISTENCE OF THE SOCIAL TYPES: GENETIC POPULATION STRUCTURE IN THE: ANT FORMICA EXSECTA (2004) (65)
The Genetics of Sexuality and Aggression (GSA) Twin Samples in Finland (2012) (64)
Plasmids Shaped the Recent Emergence of the Major Nosocomial Pathogen Enterococcus faecium (2020) (64)
Bayesian model learning based on a parallel MCMC strategy (2006) (64)
The de novo genome assembly and annotation of a female domestic dromedary of North African origin (2015) (61)
Alcohol and aggressive behavior in men–moderating effects of oxytocin receptor gene (OXTR) polymorphisms (2012) (60)
Historical Zoonoses and Other Changes in Host Tropism of Staphylococcus aureus, Identified by Phylogenetic Analysis of a Population Dataset (2013) (59)
ELFI: Engine for Likelihood Free Inference (2016) (58)
Genetic changes associated to declining populations of Formica ants in fragmented forest landscape (2005) (56)
Parallell interacting MCMC for learning of topologies of graphical models (2008) (56)
Adaptive importance sampling in signal processing (2015) (53)
The Evolutionary Path to Extraintestinal Pathogenic, Drug-Resistant Escherichia coli Is Marked by Drastic Reduction in Detectable Recombination within the Core Genome (2013) (53)
Bayesian search of functionally divergent protein subgroups and their function specific residues (2006) (52)
Reconstructing population histories from single nucleotide polymorphism data. (2011) (50)
Differences in bacterial community composition in Baltic Sea sediment in response to fish farming (2011) (49)
Inferring Cognitive Models from Data using Approximate Bayesian Computation (2016) (49)
Genome evolution and the emergence of pathogenicity in avian Escherichia coli (2021) (48)
Sequence analysis of percent G+C fraction libraries of human faecal bacterial DNA reveals a high number of Actinobacteria (2009) (48)
Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom (2018) (48)
Weak Epistasis May Drive Adaptation in Recombining Bacteria (2017) (48)
Progression and mortality of interstitial lung disease in mixed connective tissue disease: a long-term observational nationwide cohort study (2018) (46)
Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis (2019) (46)
Fast nearest neighbor search through sparse random projections and voting (2016) (44)
Recombination produces coherent bacterial species clusters in both core and accessory genomes (2015) (44)
Genomic and Functional Analysis of Emerging Virulent and Multidrug-Resistant Escherichia coli Lineage Sequence Type 648 (2019) (43)
The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis (2014) (42)
Learning Chordal Markov Networks by Constraint Satisfaction (2013) (42)
Recombination-mediated remodelling of host–pathogen interactions during Staphylococcus aureus niche adaptation (2015) (42)
Estimating the Transmission Dynamics of Streptococcus pneumoniae from Strain Prevalence Data (2013) (41)
Labeled directed acyclic graphs: a generalization of context-specific independence in directed graphical models (2013) (41)
Recombination-Mediated Host Adaptation by Avian Staphylococcus aureus (2017) (41)
Random Partition Models and Exchangeability for Bayesian Identification of Population Structure (2007) (40)
Climate induces seasonality in pneumococcal transmission (2015) (40)
Genomic determinants of speciation and spread of the Mycobacterium tuberculosis complex (2018) (40)
Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning Regressions (2020) (40)
Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era (2021) (39)
Women's and men's sexual preferences and activities with respect to the partner's age: evidence for female choice (2015) (39)
Population structure in the Neisseria, and the biological significance of fuzzy species (2012) (38)
Clinical isolates of Yersinia enterocolitica Biotype 1A represent two phylogenetic lineages with differing pathogenicity-related properties (2012) (37)
Improved Statistical Modeling of Tumor Growth and Treatment Effect in Preclinical Animal Studies with Highly Heterogeneous Responses In Vivo (2012) (37)
Bayesian modeling of recombination events in bacterial populations (2008) (36)
Genealogical lineage sorting leads to significant, but incorrect Bayesian multilocus inference of population structure (2011) (36)
Forecasting size-fractionated particle number concentrations in the urban atmosphere (2012) (36)
Bayesian estimation of bacterial community composition from 454 sequencing data (2012) (34)
A fast universal self-tuned sampler within Gibbs sampling (2014) (33)
PANINI: Pangenome Neighbour Identification for Bacterial Populations (2017) (33)
Improving Illumina assemblies with Hi‐C and long reads: An example with the North African dromedary (2019) (33)
Monomorphic genotypes within a generalist lineage of Campylobacter jejuni show signs of global dispersion (2016) (32)
Multilocus Sequence Types of Environmental Campylobacter jejuni Isolates and their Similarities to those of Human, Poultry and Bovine C. jejuni Isolates (2013) (31)
Novel R Pipeline for Analyzing Biolog Phenotypic Microarray Data (2015) (30)
Using Bayes’ theorem in behavioural crime linking of serial homicide (2013) (30)
A comprehensive and high-quality collection of Escherichia coli genomes and their genes (2021) (30)
Stratified Graphical Models - Context-Specific Independence in Graphical Models (2013) (30)
Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment (2019) (30)
An Adaptive Population Importance Sampler: Learning from the Uncertanity (2014) (29)
What’s in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B (2016) (29)
A Bayesian Approach to Modelling Graphical Vector Autoregressions (2006) (29)
Statistical Inference of Intractable Generative Models via Classification (2014) (29)
Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov. (2019) (29)
Mitogenome Sequencing in the Genus Camelus Reveals Evidence for Purifying Selection and Long-term Divergence between Wild and Domestic Bactrian Camels (2017) (29)
Two-phase importance sampling for inference about transmission trees (2014) (28)
Disease evolution in mixed connective tissue disease: results from a long-term nationwide prospective cohort study (2017) (28)
Sparse Markov Chains for Sequence Data (2014) (28)
A Logical Approach to Context-Specific Independence (2016) (28)
Bayesian assessment of dimensionality in reduced rank regression (2004) (28)
Experiences in Bayesian inference in Baltic salmon management (2014) (27)
Genome-wide epistasis and co-selection study using mutual information (2019) (27)
Bayesian unsupervised classification framework based on stochastic partitions of data and a parallel search strategy (2009) (27)
Random projection based clustering for population genomics (2014) (27)
Designing ecologically optimized pneumococcal vaccines using population genomics (2020) (27)
Intestinal carriage of ampicillin- and vancomycin-resistant Enterococcus faecium in humans, dogs and cats in the Netherlands (2018) (26)
Genomic signatures of domestication in Old World camels (2020) (26)
Dynamics of intestinal multidrug-resistant bacteria colonisation contracted by visitors to a high-endemic setting: a prospective, daily, real-time sampling study (2021) (26)
Statistical Challenges in the Quantification of Gunshot Residue Evidence (2013) (25)
Co-evolutionary signals identify Burkholderia pseudomallei survival strategies in a hostile environment. (2021) (25)
Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002-17: a nationwide, longitudinal, microbial population genomic study. (2021) (25)
Transcriptome Analysis Reveals Signature of Adaptation to Landscape Fragmentation (2014) (25)
Description of Klebsiella spallanzanii sp. nov. and of Klebsiella pasteurii sp. nov (2019) (25)
Gene Loss and Lineage-Specific Restriction-Modification Systems Associated with Niche Differentiation in the Campylobacter jejuni Sequence Type 403 Clonal Complex (2015) (25)
On the Identifiability of Transmission Dynamic Models for Infectious Diseases (2015) (25)
Marginal Pseudo-Likelihood Learning of Discrete Markov Network Structures (2017) (24)
Bayesian semi-supervised classification of bacterial samples using MLST databases (2011) (24)
Evidence for a primate origin of zoonotic Helicobacter suis colonizing domesticated pigs (2017) (24)
An adaptive population importance sampler (2014) (23)
Context-specific independence in graphical log-linear models (2014) (23)
Genome-wide association studies with high-dimensional phenotypes (2012) (23)
Understanding pneumococcal serotype 1 biology through population genomic analysis (2016) (23)
Bayesian clustering of DNA sequences using Markov chains and a stochastic partition model (2014) (23)
ON MULTIPLE TRY SCHEMES AND THE PARTICLE METROPOLIS-HASTINGS ALGORITHM (2014) (23)
The evolution of ecological facilitation within mixed-species biofilms in the mouse gastrointestinal tract (2018) (23)
Genomic Epidemiology of Penicillin-Nonsusceptible Pneumococci with Nonvaccine Serotypes Causing Invasive Disease in the United States (2017) (22)
Fine-scale haplotype structure reveals strong signatures of positive selection in a recombining bacterial pathogen (2019) (22)
SuperDCA for genome-wide epistasis analysis (2017) (22)
Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence (2018) (22)
Genetic effects on anger control and their interaction with alcohol intoxication: A self-report study (2010) (22)
The role of local partial independence in learning of Bayesian networks (2016) (22)
Population subdivision and the detection of recombination in non-typable Haemophilus influenzae. (2012) (22)
No genetic evidence of sex‐biased dispersal in a lekking bird, the capercaillie (Tetrao urogallus) (2007) (22)
Bayesian identification of bacterial strains from sequencing data (2015) (22)
Labelled Graphical Models (2003) (22)
The global dissemination of hospital clones of Enterococcus faecium (2021) (21)
The contribution of genetic variation of Streptococcus pneumoniae to the clinical manifestation of invasive pneumococcal disease (2017) (21)
On the Outage Capacity of Orthogonal Space-Time Block Codes Over Multi-Cluster Scattering MIMO Channels (2014) (21)
Common potholes in modeling solid- liquid reactions-methods for avoiding them (2011) (20)
Evaluation of a statistical forecast model for size-fractionated urban particle number concentrations using data from five European cities (2013) (20)
Are single nucleotide polymorphisms in the oxytocin and vasopressin 1A/1B receptor genes likely candidates for variation in ejaculatory function? (2012) (20)
Prior Knowledge Elicitation: The Past, Present, and Future (2021) (19)
Bayesian clustering and feature selection for cancer tissue samples (2009) (19)
Learning discrete decomposable graphical models via constraint optimization (2017) (19)
A gradient adaptive population importance sampler (2015) (19)
Directional gene flow and ecological separation in Yersinia enterocolitica (2015) (19)
Low-Rank Doubly Stochastic Matrix Decomposition for Cluster Analysis (2016) (18)
Have I seen you before? Principles of Bayesian predictive classification revisited (2013) (18)
Learning Gaussian graphical models with fractional marginal pseudo-likelihood (2016) (17)
One Health or Three? Transmission modelling of Klebsiella isolates reveals ecological barriers to transmission between humans, animals and the environment (2021) (17)
Fundamentals and Recent Developments in Approximate Bayesian Computation. (2016) (17)
SEK: sparsity exploiting k-mer-based estimation of bacterial community composition (2014) (16)
New Pathogenesis Mechanisms and Translational Leads Identified by Multidimensional Analysis of Necrotizing Myositis in Primates (2020) (16)
Genetic import and phenotype specific alleles associated with hyper-invasion in Campylobacter jejuni (2015) (16)
Different evolutionary trends form the twilight zone of the bacterial pan-genome (2021) (15)
MCMC-Driven Adaptive Multiple Importance Sampling (2015) (15)
A unified approach to joint modeling of multiple quantitative and qualitative traits in gene mapping. (2002) (15)
A Bayesian Predictive Model for Clustering Data of Mixed Discrete and Continuous Type (2015) (15)
Asymptotic Analysis of Rayleigh Product Channels: A Free Probability Approach (2017) (15)
Likelihood-free inference by penalised logistic regression (2016) (15)
Bayesian graphical model determination using decision theory (2003) (14)
K-Pax2: Bayesian identification of cluster-defining amino acid positions in large sequence datasets (2015) (14)
Doubly Stochastic Neighbor Embedding on Spheres (2016) (14)
Bayesian Clustering of Fuzzy Feature Vectors Using a Quasi-Likelihood Approach (2009) (13)
A Naive Bayes Classifier for Protein Function Prediction (2009) (13)
gplas: a comprehensive tool for plasmid analysis using short-read graphs (2019) (13)
Recursive Learning for Sparse Markov Models (2016) (13)
Adaptive Approximate Bayesian Computation Tolerance Selection (2019) (13)
The impact of host metapopulation structure on the population genetics of colonizing bacteria (2015) (12)
Analysis of a privacy-preserving PCA algorithm using random matrix theory (2016) (12)
Nucleotide diversity of functionally different groups of immune response genes in Old World camels based on newly annotated and reference-guided assemblies (2020) (12)
rPinecone: Define sub-lineages of a clonal expansion via a phylogenetic tree (2018) (12)
Bacterial genomic epidemiology with mixed samples (2021) (12)
Inference on population histories by approximating infinite alleles diffusion. (2013) (12)
Negative frequency-dependent selection and asymmetrical transformation stabilise multi-strain bacterial population structures (2020) (12)
Mode and dynamics of vanA-type vancomycin resistance dissemination in Dutch hospitals (2020) (12)
From Random Matrix Theory to Coding Theory: Volume of a Metric Ball in Unitary Group (2015) (12)
High-resolution sweep metagenomics using fast probabilistic inference (2018) (11)
Statistical modelling of measurement errors in gas chromatographic analyses of blood alcohol content. (2010) (11)
Identification of a Novel Genomic Island Associated with vanD-Type Vancomycin Resistance in Six Dutch Vancomycin-Resistant Enterococcus faecium Isolates (2018) (11)
Patterns of cross‐resistance and collateral sensitivity between clinical antibiotics and natural antimicrobials (2019) (11)
Smelly parallel MCMC chains (2015) (11)
Diagnosing model misspecification and performing generalized Bayes' updates via probabilistic classifiers (2019) (11)
Real-time sampling of travelers shows intestinal colonization by multidrug-resistant bacteria to be a dynamic process with multiple transient acquisitions (2019) (11)
Strain Variability of Listeria monocytogenes under NaCl Stress Elucidated by a High-Throughput Microbial Growth Data Assembly and Analysis Protocol (2020) (11)
Machine learning accelerated likelihood-free event reconstruction in dark matter direct detection (2018) (11)
Orthogonal MCMC algorithms (2014) (11)
Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae (2020) (11)
Computing exact clustering posteriors with subset convolution (2013) (10)
Resolving outbreak dynamics using Approximate Bayesian Computation for stochastic birth-death models (2017) (10)
Pneumococcal within-host diversity during colonization, transmission and treatment (2022) (10)
Fast k-NN search (2015) (9)
Adaptive MCMC for synthetic likelihoods and correlated synthetic likelihoods. (2020) (9)
Optimal Viterbi Bayesian predictive classification for data from finite alphabets (2013) (9)
Bacmeta: simulator for genomic evolution in bacterial metapopulations (2018) (9)
On the inconsistency of ℓ1-penalised sparse precision matrix estimation (2016) (9)
Efficient Bayesian approach for multilocus association mapping including gene-gene interactions (2010) (9)
Structure Learning for Bayesian Networks over Labeled DAGs (2018) (9)
Inverse finite-size scaling for high-dimensional significance analysis. (2018) (9)
Boosting heritability: estimating the genetic component of phenotypic variation with multiple sample splitting (2019) (8)
Addition Chains Meet Postage Stamps: Reducing the Number of Multiplications (2013) (8)
A large-scale genomic snapshot of Klebsiella spp. isolates in Northern Italy reveals limited transmission between clinical and non-clinical settings (2022) (8)
Bayesian Unsupervised Learning of DNA Regulatory Binding Regions (2009) (8)
Kpax3: Bayesian bi-clustering of large sequence datasets (2018) (8)
Phylogeographic separation and formation of sexually discrete lineages in a global population of Yersinia pseudotuberculosis (2017) (8)
The rocky road to personalized medicine: computational and statistical challenges. (2012) (8)
T-BAPS: A Bayesian Statistical Tool for Comparison of Microbial Communities Using Terminal-restriction Fragment Length Polymorphism (T-RFLP) Data (2007) (8)
Prediction of post-vaccine population structure of Streptococcus pneumoniae using accessory gene frequencies (2018) (8)
Antimicrobial exposure in sexual networks drives divergent evolution in modern gonococci (2018) (7)
Phylogenomics of Enterococcus faecalis from wild birds: new insights into host-associated differences in core and accessory genomes of the species. (2019) (7)
The binding mechanism of the virulence factor Streptococcus suis adhesin P subtype to globotetraosylceramide is associated with systemic disease (2020) (7)
COEXISTENCE OF THE SOCIAL TYPES: GENETIC POPULATION STRUCTURE IN THE ANT FORMICA EXSECTA (2004) (7)
Likelihood-Free Inference with Deep Gaussian Processes (2020) (7)
Quantifying bacterial evolution in the wild: A birthday problem for Campylobacter lineages (2020) (7)
A Bayesian Decision-Support Tool for Child Sexual Abuse Assessment and Investigation (2019) (7)
Improved inference and prediction of bacterial genotype-phenotype associations using pangenome-spanning regressions (2019) (7)
Predicting evolution using frequency-dependent selection in bacterial populations (2018) (7)
Statistical Approach to Quality Control of Large Thermodynamic Databases (2012) (7)
Inductive Inference and Partition Exchangeability in Classification (2011) (7)
The interplay between community and hospital Enterococcus faecium clones within health-care settings: a genomic analysis (2022) (7)
Bayesian inference of physiologically meaningful parameters from body sway measurements (2017) (7)
Genomes of a major nosocomial pathogen Enterococcus faecium are shaped by adaptive evolution of the chromosome and plasmidome (2019) (7)
PYLFIRE: Python implementation of likelihood-free inference by ratio estimation (2019) (7)
ARK: Aggregation of Reads by K-Means for Estimation of Bacterial Community Composition (2015) (7)
Convergent Amino Acid Signatures in Polyphyletic Campylobacter jejuni Subpopulations Suggest Human Niche Tropism (2018) (7)
Designing ecologically-optimised vaccines using population genomics (2019) (7)
Fish farming affects the abundance and diversity of the mercury resistance gene merA in marine sediments. (2011) (7)
Marginal and simultaneous predictive classification using stratified graphical models (2014) (7)
Bayesian Block-Diagonal Predictive Classifier for Gaussian Data (2012) (7)
Split-BOLFI for for misspecification-robust likelihood free inference in high dimensions (2020) (6)
Controlling anger in self-reported sober and alcohol intoxicated states: moderating effects of trait anger and alcohol consumption. (2011) (6)
A high prevalence of bla OXA-48 in Klebsiella (Raoultella) ornithinolytica and related species in hospital wastewater in South West England (2021) (6)
Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis (2015) (6)
Full Likelihood Analysis of Genetic Risk with Variable Age at Onset Disease—Combining Population-Based Registry Data and Demographic Information (2009) (6)
Signatures of negative frequency dependent selection in colonisation factors and the evolution of a multi-drug resistant lineage of Escherichia coli (2018) (5)
Publisher Correction: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis (2019) (5)
Population analysis of Legionella pneumophila reveals a basis for resistance to complement-mediated killing (2020) (5)
PCV72 EMPIRICAL EVALUATION OF THE PREDICTIVE PERFORMANCE OF CLASSIFICATION TOOLS IN CORONARY HEART DISEASE—P-COURSE, A NAIVE BAYES TOOL, OUTPERFORMS NOVEL LOGISTIC REGRESSION APPROACHES (2007) (5)
Genomic Epidemiology with Mixed Samples (2020) (5)
Monomorphic genotypes within a generalist lineage of (2016) (5)
Genetic effects on life-history traits in the Glanville fritillary butterfly (2017) (5)
Statistical properties of interaction parameter estimates in direct coupling analysis (2017) (5)
Genomic rearrangements uncovered by genome-wide co-evolution analysis of a major nosocomial pathogen, Enterococcus faecium (2020) (5)
Bayesian predictive modeling and comparison of oil samples (2014) (5)
Bayesian learning of graphical vector autoregressions with unequal lag-lengths (2009) (5)
Volume of Metric Balls in High-Dimensional Complex Grassmann Manifolds (2015) (5)
Mandrake: visualizing microbial population structure by embedding millions of genomes into a low-dimensional representation (2021) (4)
Identifying Multiple Potential Metabolic Cycles in Time-Series from Biolog Experiments (2016) (4)
Bacterial Population Genomics (2019) (4)
Learning Genetic Population Structures Using Minimization of Stochastic Complexity (2010) (4)
On the finite-SNR Diversity-Multiplexing Tradeoff in large Rayleigh product channels (2015) (4)
Genomic determinants of sympatric speciation of the Mycobacterium tuberculosis complex across evolutionary timescales. (2018) (4)
Is There a Real Bayesian Revolution in Pattern Recognition for Bioinformatics (2006) (4)
Stratified Gaussian graphical models (2014) (4)
Probabilistic Prediction of Contacts in Protein-Ligand Complexes (2012) (4)
Posterior Predictive Comparisons for the Two-sample Problem (2015) (4)
A high-throughput multiplexing and selection strategy to complete bacterial genomes (2021) (4)
Re-analysis of bipolar disorder and schizophrenia gene expression complements the Kraepelinian dichotomy. (2012) (4)
Genome-wide association, prediction and heritability in bacteria with application to Streptococcus pneumoniae (2022) (3)
ABC of the future (2021) (3)
Genome of Superficieibacter maynardsmithii, a novel, antibiotic susceptible representative of Enterobacteriaceae (2021) (3)
Probabilistic elicitation of expert knowledge through assessment of computer simulations (2020) (3)
Stochastic cluster embedding (2021) (3)
Simultaneous Predictive Gaussian Classifiers (2016) (3)
On the Jensen-Shannon divergence and the variation distance for categorical probability distributions (2022) (3)
Genomic footprints of selection under domestication in old world camelids. [W122] (2016) (3)
Inverse Modeling of Complex Interactive Behavior with ABC (2016) (3)
Structure Learning of Contextual Markov Networks using Marginal Pseudo‐likelihood (2017) (3)
Sequentially Guided MCMC Proposals for Synthetic Likelihoods and Correlated Synthetic Likelihoods (2020) (3)
Genomic rearrangements uncovered by genome-wide co-evolution analysis of a major nosocomial pathogen Enterococcus faecium (2020) (3)
Marginal Pseudo-Likelihood Learning of Markov Network structures (2014) (3)
Bayesian Adaptive Approach to Estimating Sample Sizes for Seizures of Illicit Drugs *,† (2012) (3)
A comprehensive and high-quality collection of E. coli genomes and their genes (2020) (3)
Genomic and antimicrobial resistance analyses of Neisseria gonorrhoeae isolates, Burkina Faso, 2018–2019 (2022) (3)
Parallel interacting Markov adaptive importance sampling (2015) (2)
Genome-wide association, prediction and heritability in bacteria (2021) (2)
Context-Specific and Local Independence in Markovian Dependence Structures (2016) (2)
Meta-analysis of Bayesian analyses. (2019) (2)
Classification and Bayesian Optimization for Likelihood-Free Inference (2015) (2)
Exact Bayesian learning of Partition Directed Acyclic Graphs (2018) (2)
Mode and dynamics of vanA-type vancomycin resistance dissemination in Dutch hospitals (2021) (2)
High-resolution sweep metagenomics using fast probabilistic inference (2021) (2)
Bayesian Model Learning Based on Predictive Entropy (2006) (2)
Author Correction: Genome evolution and the emergence of pathogenicity in avian Escherichia coli (2021) (2)
Analysis of recent and ancestral recombination reveals high-resolution population structure in Streptococcus pneumoniae (2016) (2)
Generalised Bayes Updates with $f$-divergences through Probabilistic Classifiers (2020) (2)
The FUSS algorithm: A Fast Universal Self-tuned Sampler within Gibbs (2014) (2)
Outage Capacity of Rayleigh Product Channels: a Free Probability Approach (2015) (2)
T-SNE Is Not Optimized to Reveal Clusters in Data (2021) (2)
Emergence and Dissemination of Antimicrobial Resistance in Escherichia Coli Causing Bloodstream Infections: A Nationwide Longitudinal Microbial Population Genomic Cohort Study in Norway between 2002-2017 (2020) (2)
Causal discovery for the microbiome (2022) (2)
A high-throughput microbial growth data assembly and analysis protocol to elucidate the strain-specific NaCl tolerance variation in Listeria monocytogenes. (2020) (2)
Corrigendum: mlplasmids: a user-friendly tool to predict plasmid- and chromosome-derived sequences for single species (2019) (2)
High-dimensional structure learning of binary pairwise Markov networks: A comparative numerical study (2019) (2)
On the Fluctuation of Mutual Information in Double Scattering MIMO Channels (2014) (2)
Cross-species evolutionary rewiring in the enteric bacteriumCampylobacter (2021) (2)
An object oriented Python interface for atomistic simulations (2016) (2)
Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe (2022) (2)
Response to ‘Refined analyses suggest that recombination is a minor source of genomic diversity in Pseudomonas aeruginosa chronic cystic fibrosis infections’ by Williams et al. (2016) (2016) (1)
Acinetobacter in the skin microbiota protects from atopic sensitisation (2014) (1)
Co-evolutionary signals from Burkholderia pseudomallei genomics identify its survival strategies and highlight improving environmental health as prevention policy (2021) (1)
Corrigendum: Climate induces seasonality in pneumococcal transmission (2016) (1)
High-dimensional structure learning of sparse vector autoregressive models using fractional marginal pseudo-likelihood (2020) (1)
The global dissemination of hospital clones of Enterococcus faecium (2021) (1)
A two-hit epistasis model prevents core genome disharmony in recombining bacteria (2023) (1)
The effect of recombination on the evolution of a population of Neisseria meningitidis (2020) (1)
On the volume of a metric ball in unitary group (2015) (1)
Composite local low-rank structure in learning drug sensitivity. (2019) (1)
Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus (2012) (1)
Likelihood-free inference via classification (2014) (1)
Rapid statistical methods for inferring intra- and inter-hospital transmission of nosocomial pathogens from whole genome sequence data (2018) (1)
International links between Streptococcus pneumoniae vaccine serotype 4 sequence type (ST) 801 in Northern European shipyard outbreaks of invasive pneumococcal disease (2022) (1)
Strong pathogen competition in neonatal gut colonisation (2022) (1)
On Bayesian graphical model determination (2000) (1)
Sequence element enrichment analysis to determine the 1 genetic basis of bacterial phenotypes 2 3 (2016) (1)
Bayesian semi-parametric forecasting of ultrafine particle number concentration with penalised splines and autoregressive errors (2012) (1)
Efficient Bayesian Inference of Atomistic Structure in Complex Functional Materials (2017) (1)
Approximate Bayesian inference from noisy likelihoods with Gaussian process emulated MCMC (2021) (1)
Integrated analysis of population genomics, transcriptomics and virulence provides novel insights into Streptococcus pyogenes pathogenesis (2019) (1)
Clinical isolates of Yersinia enterocolitica Biotype 1A represent two phylogenetic lineages with differing pathogenicity-related properties (2012) (1)
Antimicrobial resistance genes and clonal success in Escherichia coli isolates causing bloodstream infection - Authors' reply. (2021) (1)
Marginal Pseudo-Likelihood Inference for Markov Networks (2014) (1)
Bayesian semi-parametric forecasting of particle number concentration: penalised splines and autoregressive errors (2012) (1)
Proceedings of the Seventeenth International Conference on Artificial Intelligence and Statistics, JMLR W&CP, Vol. 33 (2014) (1)
Bacmeta: simulation for genomic evolution in bacterial metapopulations (2017) (1)
Asymptotic Matrix Variate von-Mises Fisher and Bingham Distributions with Applications (2015) (1)
Global and local epidemiology of Group A Streptococcus indicates that naturally-acquired immunity is enduring and strain-specific (2021) (1)
Learning Genetic Population Structures Using Minimization of (2010) (1)
SAT0709 Mortality prediction in mixed connective tissue disease (2017) (0)
A tribute to Mats Gyllenberg, on the occasion of his 60th birthday (2016) (0)
Marginal Pseudo-Likelihood Inference for Markov Networks Marginal Pseudo-Likelihood Inference for Markov Networks (2014) (0)
Outage capacity of OSTBCs over pico-cellular MIMO channels (2014) (0)
A tribute to Mats Gyllenberg, on the occasion of his 60th birthday (2016) (0)
Data from: Novel R pipeline for analyzing Biolog phenotypic microarray data (2015) (0)
Baseline adjustment increases accurate interpretation of posturographic sway scores. (2015) (0)
New features in a nutshell (2009) (0)
3 F eb 2 01 4 Addition Chains Meet Postage Stamps : Reducing the Number of Multiplications Jukka Kohonen (2021) (0)
P867Yield of targeted AF screening in a high-risk cohort with chronic kidney disease, diabetes mellitus and cardiovascular disease (2018) (0)
Genetic import and phenotype specific alleles associated with hyper-invasion in Campylobacter jejuni (2015) (0)
The highly diverse and complex plasmid population found in Escherichia coli colonising travellers to Laos and their role in antimicrobial resistance gene carriage (2022) (0)
AN ADAPTIVE POPULATION IMPORTANCE SAMPLER : LEARNING FROM ERRORS (2014) (0)
Quantifying the common genetic variability of bacterial traits (2023) (0)
Meric et al. 2015 GBE: 83 novel Staphylococcus epidermidis genome assemblies (2015) (0)
Nucleotide diversity of functionally different groups of immune response genes in Old World camels based on newly annotated and reference-guided assemblies (2020) (0)
Labeled directed acyclic graphs: a generalization of context-specific independence in directed graphical models (2014) (0)
Characterization of Genetic Diversity and Structure Analysiswithin Pea (Pisum Sativum L.) Germplasm at Agritec Ltd.Collection (2007) (0)
Consistent typing of plasmids with the mge-cluster pipeline (2022) (0)
The COVID-19 Pandemic Sparked Off a Large-Scale Outbreak of Carbapenem-Resistant Acinetobacter baumannii from the Endemic Strains at an Italian Hospital (2023) (0)
Resolving outbreak dynamics using approximate Bayesian computation for stochastic birth–death models (2019) (0)
IEEE International Symposium on Information Theory,ISIT 2015, Hong Kong, June 14-19, 2015 (2015) (0)
The evolution of ecological facilitation within mixed-species biofilms in the mouse gastrointestinal tract (2018) (0)
Correction: Transcriptome Analysis Reveals Signature of Adaptation to Landscape Fragmentation (2014) (0)
Genomes link the global spread of Burkholderia pseudomallei to human 1 movement and trade 2 3 (2017) (0)
Statistical properties of the allelic mismatch distribution in neutrally evolving haploid populations (2016) (0)
Pneumococcal colonization and carriage (2014) (0)
Enterococcus spp. from chicken meat collected 20 years apart overcome multiple stresses occurring in the poultry production chain: Antibiotics, copper and acids (2022) (0)
Learning pairwise Markov network structures using correlation neighborhoods (2019) (0)
Inferring the heritability of bacterial traits in the era of machine learning (2022) (0)
Learning discrete decomposable graphical models via constraint optimization (2015) (0)
Evolution of Chlorhexidine Susceptibility and of the EfrEF Operon among Enterococcus faecalis from Diverse Environments, Clones, and Time Spans (2022) (0)
Signals of selection during domestication in old world camelids. [P0686] (2016) (0)
BISP 7 Seventh Workshop on BAYESIAN INFERENCE IN STOCHASTIC PROCESSES (2011) (0)
Correction: Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence (2019) (0)
Producing polished prokaryotic pangenomes with the Panaroo pipeline (2020) (0)
Interacting networks of resistance , virulence and core machinery genes identified by genome-wide 1 epistasis analysis 2 Short title : Genome-wide epistasis analysis in bacteria 3 (2016) (0)
Designing ecologically optimized pneumococcal vaccines using population genomics (2020) (0)
Correction: Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence (2019) (0)
Identifying Bacterial Strains from Sequencing Data. (2018) (0)
The binding mechanism of Streptococcus suis accessory virulence factor and adhesin SadP to globotetraosylceramide (2020) (0)
ABC coming of age (2017) (0)
Co-evolutionary signals from Burkholderia pseudomallei population genomics highlight its survival strategy in a hostile environment (2020) (0)
Have I seen you before? Principles of Bayesian predictive classification revisited (2011) (0)
Marginal and simultaneous predictive classification using stratified graphical models (2015) (0)
Macroevolution of gastric Helicobacter species unveils interspecies admixture and time of divergence (2018) (0)
Simultaneous Predictive Gaussian Classifiers (2016) (0)
Self-supervised learning for DNA sequences with circular dilated convolutional networks (2023) (0)
Co-evolutionary signals from Burkholderia pseudomallei population genomics highlight its survival strategy in a hostile environment (2020) (0)
ELFI, a software package for likelihood-free inference (2017) (0)
26th International Conference on Neural Information Processing Systems (NIPS 2013), Lake Tahoe, 5-8 December, 2013 (2013) (0)
Identification of multiplicatively acting modulatory mutational signatures in cancer (2022) (0)
Multi-drug resistant E. coli displace commensal E. coli from the intestinal tract, a trait associated with elevated levels of genetic diversity in carbohydrate metabolism genes (2022) (0)
Gene expression meta-analysis of bipolar disorder and schizophrenia (2010) (0)
Personality and Social Psychology Controlling anger in self-reported sober and alcohol intoxicated states: Moderating effects of trait anger and alcohol consumption (2011) (0)
The genomic (re)definition of EPEC (2019) (0)
Improving Illumina assemblies with HiC and long reads: An example with the North (2019) (0)
Accounting for stellar activity signals in radial-velocity data by using change point detection techniques (2022) (0)
Discovering recent selection forces shaping the evolution of dengue viruses based on polymorphism data across geographic scales (2022) (0)
University of Birmingham Convergent amino acid signatures in polyphyletic Campylobacter jejuni sub-populations suggest human niche tropism (2018) (0)
A bayesian random fragment insertion model for de novo detection of DNA regulatory binding regions (2007) (0)
The impact of antimicrobials on gonococcal evolution (2019) (0)
Identification of selective sweeps in bacteria (2023) (0)
Denoising Cluster Analysis (2015) (0)
A conversation with Elja Arjas (Helsinki, November 2021 and March 2022) (2022) (0)
Bayesian Model Learning Based on Predictive (2006) (0)
Frequency-dependent selection in vaccine-associated pneumococcal population dynamics (2017) (0)
SuperDCA for genome-wide epistasis analysis 1 (2017) (0)
On the exact volume of metric balls in complex Grassmann manifolds (2015) (0)
The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis (2014) (0)
Disease-associated genotypes of the commensal skin bacterium Staphylococcus epidermidis (2018) (0)
Learning Cancer Drug Sensitivities in Large-Scale Screens from Multi-omics Data with Local Low-Rank Structure (2019) (0)
Boosting heritability: estimating the genetic component of phenotypic variation with multiple sample splitting (2021) (0)
Nonparametric likelihood-free inference with Jensen-Shannon divergence for simulator-based models with categorical output (2022) (0)
Title: Fast and flexible bacterial genomic epidemiology with PopPUNK Running title: Bacterial genomic epidemiology with PopPUNK (2018) (0)
Global and regional dissemination and evolution of Burkholderia pseudomallei 1 2 (2016) (0)
FRI0725 Prediction of interstitial lung disease in mixed connective tissue disease (2017) (0)
Mitogenome Sequencing in the Genus Camelus Reveals Evidence for Purifying Selection and Long-term Divergence between Wild and Domestic Bactrian Camels (2017) (0)
Erratum: Publisher Correction: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis (Nature communications (2015) 6 (6740)) (2019) (0)
Bayesian semi-parametric forecasting with penalised splines and autoregressive errors (2012) (0)
Edinburgh Explorer Likelihood-free inference by ratio estimation (2022) (0)
On predictive inference for intractable models via approximate Bayesian computation (2022) (0)
Gene exchange drives the ecological success of a multi-host bacterial pathogen (2018) (0)
Supporting material : Improved statistical modeling of tumor growth and treatment effect in pre-clinical animal studies with highly heterogeneous responses in vivo (2012) (0)
Genomic signatures of domestication in Old World camels (2020) (0)
An investigation into extended spectrum beta-lactamase colonisation in travellers to Laos (2020) (0)
Erratum: Crowdsourced assessment of common genetic contribution to predicting anti-TNF treatment response in rheumatoid arthritis (2016) (0)
Context-specific independence in graphical log-linear models (2015) (0)
DSP Adaptive Importance Sampling in Signal Processing (2015) (0)
On the inconsistency of ℓ1-penalised sparse precision matrix estimation (2016) (0)
Introduction Jon Williamson Draft of August 5 , 2005 Combining Probability and Logic (2005) (0)
The population-level impact of Enterococcus faecalis genetics on intestinal colonisation and extraintestinal infection (2022) (0)
Likelihood-free Model Choice for Simulator-based Models with the Jensen-Shannon Divergence (2022) (0)
Materials & Methods Phylogeographical signal resides in the accessory genome (2015) (0)
PCV74 A COMPARATIVE PHARMACOECONOMIC ANALYSIS OF STATINS IN RUSSIA (2010) (0)

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