Julian Parkhill
#63,307
Most Influential Person Now
Geneticist, working with pathogens
Julian Parkhill's AcademicInfluence.com Rankings
Julian Parkhillbiology Degrees
Biology
#4093
World Rank
#6151
Historical Rank
Genetics
#390
World Rank
#453
Historical Rank
Download Badge
Biology
Julian Parkhill's Degrees
- Bachelors Biochemistry University of Oxford
Why Is Julian Parkhill Influential?
(Suggest an Edit or Addition)According to Wikipedia, Julian Parkhill is Professor of Bacterial Evolution in the Department of Veterinary Medicine at the University of Cambridge. He previously served as head of pathogen genomics at the Wellcome Sanger Institute.
Julian Parkhill's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- A human gut microbial gene catalogue established by metagenomic sequencing (2010) (9177)
- Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence (1998) (7740)
- Artemis: sequence visualization and annotation (2000) (3144)
- Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2) (2002) (2919)
- Roary: rapid large-scale prokaryote pan genome analysis (2015) (2885)
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses (2014) (2297)
- The genome sequence of the food-borne pathogen Campylobacter jejuni reveals hypervariable sequences (2000) (1980)
- Massive gene decay in the leprosy bacillus (2001) (1664)
- ACT: the Artemis comparison tool (2005) (1560)
- Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins (2014) (1439)
- An integrated catalog of reference genes in the human gut microbiome (2014) (1431)
- Dominant and diet-responsive groups of bacteria within the human colonic microbiota (2011) (1412)
- The minimum information about a genome sequence (MIGS) specification (2008) (1344)
- Complete genome sequence of a multiple drug resistant Salmonella enterica serovar Typhi CT18 (2001) (1206)
- Genome sequence of Yersinia pestis, the causative agent of plague (2001) (1195)
- Evolution of MRSA During Hospital Transmission and Intercontinental Spread (2010) (1091)
- The genome of the blood fluke Schistosoma mansoni (2009) (992)
- The complete genome sequence of Mycobacterium bovis (2003) (957)
- Comparative analysis of the genome sequences of Bordetella pertussis, Bordetella parapertussis and Bordetella bronchiseptica (2003) (948)
- Complete genomes of two clinical Staphylococcus aureus strains: evidence for the rapid evolution of virulence and drug resistance. (2004) (928)
- Salmonella enterica Serovar Typhimurium Exploits Inflammation to Compete with the Intestinal Microbiota (2007) (926)
- Artemis: an integrated platform for visualization and analysis of high-throughput sequence-based experimental data (2011) (887)
- The multidrug-resistant human pathogen Clostridium difficile has a highly mobile, mosaic genome (2006) (877)
- Out-of-Africa migration and Neolithic co-expansion of Mycobacterium tuberculosis with modern humans (2013) (866)
- Rapid Pneumococcal Evolution in Response to Clinical Interventions (2011) (865)
- Meticillin-resistant Staphylococcus aureus with a novel mecA homologue in human and bovine populations in the UK and Denmark: a descriptive study (2011) (859)
- DNAPlotter: circular and linear interactive genome visualization (2008) (781)
- Genomic plasticity of the causative agent of melioidosis, Burkholderia pseudomallei. (2004) (740)
- Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491 (2000) (732)
- Whole-genome sequencing to delineate Mycobacterium tuberculosis outbreaks: a retrospective observational study (2013) (718)
- Genetic Analysis of the Capsular Biosynthetic Locus from All 90 Pneumococcal Serotypes (2006) (671)
- Circlator: automated circularization of genome assemblies using long sequencing reads (2015) (645)
- Emergence and global spread of epidemic healthcare-associated Clostridium difficile (2012) (640)
- Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak. (2012) (631)
- Evidence for several waves of global transmission in the seventh cholera pandemic (2011) (613)
- High-throughput clone library analysis of the mucosa-associated microbiota reveals dysbiosis and differences between inflamed and non-inflamed regions of the intestine in inflammatory bowel disease (2011) (610)
- EPIGENETIC REGULATION OF CELLULAR MEMORY BY THE POLYCOMB AND TRITHORAX GROUP PROTEINS (2008) (579)
- Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database (2008) (563)
- Simultaneous assay of every Salmonella Typhi gene using one million transposon mutants. (2009) (559)
- Genome plasticity of BCG and impact on vaccine efficacy (2007) (549)
- Whole-genome sequencing for analysis of an outbreak of meticillin-resistant Staphylococcus aureus: a descriptive study (2013) (539)
- Whole-genome sequencing to identify transmission of Mycobacterium abscessus between patients with cystic fibrosis: a retrospective cohort study (2013) (533)
- The genome of Rhizobium leguminosarum has recognizable core and accessory components (2006) (529)
- Targeted Restoration of the Intestinal Microbiota with a Simple, Defined Bacteriotherapy Resolves Relapsing Clostridium difficile Disease in Mice (2012) (521)
- Insights from the complete genome sequence of Mycobacterium marinum on the evolution of Mycobacterium tuberculosis. (2008) (519)
- Sequencing ancient calcified dental plaque shows changes in oral microbiota with dietary shifts of the Neolithic and Industrial revolutions (2013) (503)
- Epidemic multiple drug resistant Salmonella Typhimurium causing invasive disease in sub-Saharan Africa have a distinct genotype. (2009) (498)
- Routine Use of Microbial Whole Genome Sequencing in Diagnostic and Public Health Microbiology (2012) (484)
- Whole-genome sequencing for prediction of Mycobacterium tuberculosis drug susceptibility and resistance: a retrospective cohort study (2015) (480)
- High-throughput sequencing provides insights into genome variation and evolution in Salmonella Typhi (2008) (477)
- Microevolution and history of the plague bacillus, Yersinia pestis. (2004) (470)
- The complete genome, comparative and functional analysis of Stenotrophomonas maltophilia reveals an organism heavily shielded by drug resistance determinants (2008) (453)
- Comparative genome and phenotypic analysis of Clostridium difficile 027 strains provides insight into the evolution of a hypervirulent bacterium (2009) (447)
- ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads (2017) (435)
- Pre-Columbian mycobacterial genomes reveal seals as a source of New World human tuberculosis (2014) (431)
- Genome Project Standards in a New Era of Sequencing (2009) (422)
- A genomic portrait of the emergence, evolution, and global spread of a methicillin-resistant Staphylococcus aureus pandemic (2013) (420)
- Comparative genome analysis of Salmonella Enteritidis PT4 and Salmonella Gallinarum 287/91 provides insights into evolutionary and host adaptation pathways. (2008) (419)
- Genomic and genetic analyses of diversity and plant interactions of Pseudomonas fluorescens (2009) (417)
- Evolution and transmission of drug resistant tuberculosis in a Russian population (2014) (409)
- Emergence and spread of a human-transmissible multidrug-resistant nontuberculous mycobacterium (2016) (406)
- Genome sequence of the enterobacterial phytopathogen Erwinia carotovora subsp. atroseptica and characterization of virulence factors. (2004) (404)
- Expanding the biotechnology potential of lactobacilli through comparative genomics of 213 strains and associated genera (2015) (383)
- Interpolated variable order motifs for identification of horizontally acquired DNA: revisiting the Salmonella pathogenicity islands (2006) (379)
- Evolutionary dynamics of Clostridium difficile over short and long time scales (2010) (370)
- Reductive evolution and niche adaptation inferred from the genome of Mycobacterium ulcerans, the causative agent of Buruli ulcer. (2007) (367)
- Phylogeographical analysis of the dominant multidrug-resistant H58 clade of Salmonella Typhi identifies inter- and intracontinental transmission events (2015) (363)
- Massive gene decay in the leprosy (2001) (362)
- Accelerated telomere shortening in ataxia telangiectasia (1996) (354)
- Whole genome comparison of Campylobacter jejuni human isolates using a low-cost microarray reveals extensive genetic diversity. (2001) (345)
- Microbiology in the post-genomic era (2008) (343)
- Human placenta has no microbiome but can harbour potential pathogens (2019) (343)
- Dense genomic sampling identifies highways of pneumococcal recombination (2014) (342)
- Newly introduced genomic prophage islands are critical determinants of in vivo competitiveness in the Liverpool Epidemic Strain of Pseudomonas aeruginosa. (2008) (340)
- Population genomics of post-vaccine changes in pneumococcal epidemiology (2013) (339)
- Antibiotic Treatment of Clostridium difficile Carrier Mice Triggers a Supershedder State, Spore-Mediated Transmission, and Severe Disease in Immunocompromised Hosts (2009) (339)
- The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients (2008) (331)
- Complete Genome Sequence and Comparative Genome Analysis of Enteropathogenic Escherichia coli O127:H6 Strain E2348/69 (2008) (330)
- The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129. (2003) (319)
- Comparative genomic structure of prokaryotes. (2004) (317)
- Distinguishable Epidemics of Multidrug-Resistant Salmonella Typhimurium DT104 in Different Hosts (2013) (312)
- Whole genome analysis of diverse Chlamydia trachomatis strains identifies phylogenetic relationships masked by current clinical typing (2012) (301)
- The Transcription Factor T-bet Regulates Intestinal Inflammation Mediated by Interleukin-7 Receptor+ Innate Lymphoid Cells (2012) (300)
- Comparative Genomic Analyses of Seventeen Streptococcus pneumoniae Strains: Insights into the Pneumococcal Supragenome (2007) (291)
- Complete Sequence and Organization of pBtoxis, the Toxin-Coding Plasmid of Bacillus thuringiensis subsp. israelensis (2002) (288)
- Extensive DNA Inversions in the B. fragilis Genome Control Variable Gene Expression (2005) (275)
- Modulation of the human gut microbiota by dietary fibres occurs at the species level (2016) (273)
- Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition (2014) (273)
- Shigella sonnei genome sequencing and phylogenetic analysis indicate recent global dissemination from Europe (2012) (272)
- Complete Genome Sequence and Lytic Phase Transcription Profile of a Coccolithovirus (2005) (266)
- Description and Nomenclature of Neisseria meningitidis Capsule Locus (2013) (265)
- A Strand-Specific RNA–Seq Analysis of the Transcriptome of the Typhoid Bacillus Salmonella Typhi (2009) (264)
- Genome-wide association study identifies vitamin B5 biosynthesis as a host specificity factor in Campylobacter (2013) (262)
- GeneDB: a resource for prokaryotic and eukaryotic organisms (2004) (257)
- Genome sequence of a proteolytic (Group I) Clostridium botulinum strain Hall A and comparative analysis of the clostridial genomes. (2007) (246)
- GeneDB—an annotation database for pathogens (2011) (239)
- The Impact of Different DNA Extraction Kits and Laboratories upon the Assessment of Human Gut Microbiota Composition by 16S rRNA Gene Sequencing (2014) (239)
- Proteomic and microarray characterization of the AggR regulon identifies a pheU pathogenicity island in enteroaggregative Escherichia coli (2006) (238)
- Proteomic and Genomic Characterization of Highly Infectious Clostridium difficile 630 Spores (2009) (236)
- Producing polished prokaryotic pangenomes with the Panaroo pipeline (2020) (236)
- Global Population Structure and Evolution of Bordetella pertussis and Their Relationship with Vaccination (2014) (233)
- Complete Genome Sequence of Uropathogenic Proteus mirabilis, a Master of both Adherence and Motility (2008) (232)
- Partitioning core and satellite taxa from within cystic fibrosis lung bacterial communities (2010) (230)
- Whole genome sequencing identifies zoonotic transmission of MRSA isolates with the novel mecA homologue mecC (2013) (228)
- Multireplicon genome architecture of Lactobacillus salivarius. (2006) (226)
- Sequence-Based Analysis Uncovers an Abundance of Non-Coding RNA in the Total Transcriptome of Mycobacterium tuberculosis (2011) (224)
- Genomic Evidence for the Evolution of Streptococcus equi: Host Restriction, Increased Virulence, and Genetic Exchange with Human Pathogens (2009) (224)
- Rapid Evolution of Virulence and Drug Resistance in the Emerging Zoonotic Pathogen Streptococcus suis (2009) (224)
- Single-cell genomics (2008) (224)
- Genome Evolution of Wolbachia Strain wPip from the Culex pipiens Group (2008) (222)
- Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis (2018) (221)
- Reverse Transcriptase-Mediated Tropism Switching in Bordetella Bacteriophage (2002) (218)
- The Complete Genome Sequence and Comparative Genome Analysis of the High Pathogenicity Yersinia enterocolitica Strain 8081 (2006) (218)
- Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei (2003) (216)
- Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome sequence (2007) (214)
- Chlamydia trachomatis: genome sequence analysis of lymphogranuloma venereum isolates. (2007) (213)
- 16S rRNA gene-based profiling of the human infant gut microbiota is strongly influenced by sample processing and PCR primer choice (2015) (211)
- Recognizing the reagent microbiome (2018) (208)
- Genome analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of the etiologic agent of tuberculosis (2013) (206)
- Meningococcal Genetic Variation Mechanisms Viewed through Comparative Analysis of Serogroup C Strain FAM18 (2006) (202)
- Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data (2016) (202)
- Intra-continental spread of human invasive Salmonella Typhimurium pathovariants in sub-Saharan Africa (2012) (200)
- Genome Sequence of a Recently Emerged, Highly Transmissible, Multi-Antibiotic- and Antiseptic-Resistant Variant of Methicillin-Resistant Staphylococcus aureus, Sequence Type 239 (TW) (2009) (200)
- Large-scale whole genome sequencing of M. tuberculosis provides insights into transmission in a high prevalence area (2015) (198)
- Genomic Encyclopedia of Bacteria and Archaea: Sequencing a Myriad of Type Strains (2014) (195)
- Comprehensive Identification of Single Nucleotide Polymorphisms Associated with Beta-lactam Resistance within Pneumococcal Mosaic Genes (2014) (193)
- Analysis of Campylobacter jejuni capsular loci reveals multiple mechanisms for the generation of structural diversity and the ability to form complex heptoses (2004) (193)
- Genomic history of the seventh pandemic of cholera in Africa (2017) (190)
- Prepublication data sharing (2009) (190)
- The Chlamydophila abortus genome sequence reveals an array of variable proteins that contribute to interspecies variation. (2005) (187)
- Microevolution of extensively drug-resistant tuberculosis in Russia. (2012) (186)
- Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology. (2013) (186)
- Patterns of genome evolution that have accompanied host adaptation in Salmonella (2014) (184)
- Genomic epidemiology of Neisseria gonorrhoeae with reduced susceptibility to cefixime in the USA: a retrospective observational study (2014) (183)
- Systematic longitudinal survey of invasive Escherichia coli in England demonstrates a stable population structure only transiently disturbed by the emergence of ST131 (2017) (183)
- Whole-genome sequencing to establish relapse or re-infection with Mycobacterium tuberculosis: a retrospective observational study (2013) (181)
- Microbial genome-wide association studies: lessons from human GWAS (2016) (181)
- Inferring patient to patient transmission of Mycobacterium tuberculosis from whole genome sequencing data (2013) (180)
- Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline (2014) (180)
- A Commensal Gone Bad: Complete Genome Sequence of the Prototypical Enterotoxigenic Escherichia coli Strain H10407 (2010) (177)
- The newly described mecA homologue, mecALGA251, is present in methicillin-resistant Staphylococcus aureus isolates from a diverse range of host species. (2012) (176)
- Molecular tracing of the emergence, adaptation, and transmission of hospital-associated methicillin-resistant Staphylococcus aureus (2012) (176)
- Complete Genome Sequence and Comparative Metabolic Profiling of the Prototypical Enteroaggregative Escherichia coli Strain 042 (2010) (175)
- Whole-Genome Sequencing for Routine Pathogen Surveillance in Public Health: a Population Snapshot of Invasive Staphylococcus aureus in Europe (2016) (173)
- Comprehensive Assignment of Roles for Salmonella Typhimurium Genes in Intestinal Colonization of Food-Producing Animals (2013) (173)
- Salmonella enterica Serovar Typhi Possesses a Unique Repertoire of Fimbrial Gene Sequences (2001) (173)
- Methicillin-resistant Staphylococcus aureus emerged long before the introduction of methicillin into clinical practice (2017) (171)
- The complete nucleotide sequence of the resistance plasmid R478: defining the backbone components of incompatibility group H conjugative plasmids through comparative genomics. (2004) (170)
- Intercontinental dissemination of azithromycin-resistant shigellosis through sexual transmission: a cross-sectional study. (2015) (169)
- Patent Human Infections with the Whipworm, Trichuris trichiura, Are Not Associated with Alterations in the Faecal Microbiota (2013) (166)
- Salmonella bongori Provides Insights into the Evolution of the Salmonellae (2011) (165)
- The Citrobacter rodentium Genome Sequence Reveals Convergent Evolution with Human Pathogenic Escherichia coli (2009) (165)
- Molecular tracing of the emergence, diversification, and transmission of S. aureus sequence type 8 in a New York community (2014) (165)
- Composition, Acquisition, and Distribution of the Vi Exopolysaccharide-Encoding Salmonella enterica Pathogenicity Island SPI-7 (2003) (163)
- Sequence element enrichment analysis to determine the genetic basis of bacterial phenotypes (2016) (162)
- Pneumococcal Capsular Switching: A Historical Perspective (2012) (159)
- A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes (2014) (159)
- Pseudogene accumulation in the evolutionary histories of Salmonella enterica serovars Paratyphi A and Typhi (2009) (159)
- Novel staphylococcal species that form part of a Staphylococcus aureus-related complex: the non-pigmented Staphylococcus argenteus sp. nov. and the non-human primate-associated Staphylococcus schweitzeri sp. nov. (2015) (158)
- A Very Early-Branching Staphylococcus aureus Lineage Lacking the Carotenoid Pigment Staphyloxanthin (2011) (156)
- Role of Conjugative Elements in the Evolution of the Multidrug-Resistant Pandemic Clone Streptococcus pneumoniaeSpain23F ST81 (2008) (156)
- The Burkholderia cepacia Epidemic Strain Marker Is Part of a Novel Genomic Island Encoding Both Virulence and Metabolism-Associated Genes in Burkholderia cenocepacia (2004) (155)
- Wolbachia variability and host effects on crossing type in Culex mosquitoes (2005) (153)
- Recurrence due to Relapse or Reinfection With Mycobacterium tuberculosis: A Whole-Genome Sequencing Approach in a Large, Population-Based Cohort With a High HIV Infection Prevalence and Active Follow-up (2014) (150)
- Genome Evolution and Plasticity of Serratia marcescens, an Important Multidrug-Resistant Nosocomial Pathogen (2014) (148)
- Parallel independent evolution of pathogenicity within the genus Yersinia (2014) (145)
- Emergence of the Asian 1 Genotype of Dengue Virus Serotype 2 in Viet Nam: In Vivo Fitness Advantage and Lineage Replacement in South-East Asia (2010) (144)
- Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings (2016) (144)
- Corrigendum: Streptococcus agalactiae clones infecting humans were selected and fixed through the extensive use of tetracycline (2015) (144)
- Community dynamics and the lower airway microbiota in stable chronic obstructive pulmonary disease, smokers and healthy non-smokers (2016) (141)
- A genomic approach to bacterial taxonomy: an examination and proposed reclassification of species within the genus Neisseria (2012) (138)
- Phylogenetic Relationships of the Wolbachia of Nematodes and Arthropods (2006) (137)
- The Genome of a Pathogenic Rhodococcus: Cooptive Virulence Underpinned by Key Gene Acquisitions (2010) (135)
- The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries (2016) (133)
- A decade of advances in transposon-insertion sequencing (2020) (133)
- The role of prophage-like elements in the diversity of Salmonella enterica serovars. (2004) (131)
- Progressive genome-wide introgression in agricultural Campylobacter coli (2012) (130)
- Real-Time Genomic Epidemiological Evaluation of Human Campylobacter Isolates by Use of Whole-Genome Multilocus Sequence Typing (2013) (130)
- Whole-genome sequencing for rapid susceptibility testing of M. tuberculosis. (2013) (130)
- Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification (2016) (130)
- A Shared Population of Epidemic Methicillin-Resistant Staphylococcus aureus 15 Circulates in Humans and Companion Animals (2014) (127)
- Microevolution of Monophasic Salmonella Typhimurium during Epidemic, United Kingdom, 2005–2010 (2016) (126)
- Co-evolution of genomes and plasmids within Chlamydia trachomatis and the emergence in Sweden of a new variant strain (2009) (126)
- Gene exchange drives the ecological success of a multi-host bacterial pathogen (2018) (123)
- Comparative cell wall core biosynthesis in the mycolated pathogens, Mycobacterium tuberculosis and Corynebacterium diphtheriae. (2004) (123)
- Whole-genome sequences of Chlamydia trachomatis directly from clinical samples without culture (2013) (123)
- Cryptic ecology among host generalist Campylobacter jejuni in domestic animals (2014) (121)
- Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis (2015) (121)
- The Ecological Dynamics of Fecal Contamination and Salmonella Typhi and Salmonella Paratyphi A in Municipal Kathmandu Drinking Water (2016) (121)
- Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi. (2000) (120)
- A bimodal pattern of relatedness between the Salmonella Paratyphi A and Typhi genomes: convergence or divergence by homologous recombination? (2006) (119)
- Emergence of a Globally Dominant IncHI1 Plasmid Type Associated with Multiple Drug Resistant Typhoid (2011) (118)
- Rapid Emergence of Multidrug Resistant, H58-Lineage Salmonella Typhi in Blantyre, Malawi (2015) (112)
- An extended genotyping framework for Salmonella enterica serovar Typhi, the cause of human typhoid (2016) (112)
- Capturing the cloud of diversity reveals complexity and heterogeneity of MRSA carriage, infection and transmission (2015) (110)
- Global and regional dissemination and evolution of Burkholderia pseudomallei (2017) (110)
- SCP1, a 356 023 bp linear plasmid adapted to the ecology and developmental biology of its host, Streptomyces coelicolor A3(2) (2004) (110)
- Tracking the establishment of local endemic populations of an emergent enteric pathogen (2013) (109)
- Signatures of Adaptation in Human Invasive Salmonella Typhimurium ST313 Populations from Sub-Saharan Africa (2015) (109)
- Genome sequencing defines phylogeny and spread of methicillin-resistant Staphylococcus aureus in a high transmission setting (2015) (108)
- Evolutionary dynamics of methicillin-resistant Staphylococcus aureus within a healthcare system (2015) (108)
- A comparison of dense transposon insertion libraries in the Salmonella serovars Typhi and Typhimurium (2013) (107)
- Novel Mycobacterium tuberculosis Complex Isolate from a Wild Chimpanzee (2013) (107)
- Distribution of tetracycline and erythromycin resistance genes among human oral and fecal metagenomic DNA. (2009) (107)
- New insertion sequences and a novel repeated sequence in the genome of Mycobacterium tuberculosis H37Rv. (1999) (106)
- Evidence for niche adaptation in the genome of the bovine pathogen Streptococcus uberis (2009) (106)
- Complete Genome Sequence of the Plant Pathogen Erwinia amylovora Strain ATCC 49946 (2010) (105)
- Intra- and Interhost Evolutionary Dynamics of Equine Influenza Virus (2010) (105)
- Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus (2012) (104)
- Novel mutations in penicillin-binding protein genes in clinical Staphylococcus aureus isolates that are methicillin resistant on susceptibility testing, but lack the mec gene (2013) (104)
- Integrated view of Vibrio cholerae in the Americas (2017) (104)
- Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens (2012) (104)
- Wheat bran promotes enrichment within the human colonic microbiota of butyrate‐producing bacteria that release ferulic acid (2016) (103)
- The Bacteriology of Pouchitis: A Molecular Phylogenetic Analysis Using 16S rRNA Gene Cloning and Sequencing (2010) (103)
- Identification of Antigen-Specific B Cell Receptor Sequences Using Public Repertoire Analysis (2015) (103)
- High-Resolution Single Nucleotide Polymorphism Analysis Distinguishes Recrudescence and Reinfection in Recurrent Invasive Nontyphoidal Salmonella Typhimurium Disease (2012) (103)
- A pilot study of rapid whole-genome sequencing for the investigation of a Legionella outbreak (2013) (103)
- Essential roles of methionine and S-adenosylmethionine in the autarkic lifestyle of Mycobacterium tuberculosis (2015) (101)
- Mutations revealed by sequencing the 5' half of the gene for ataxia telangiectasia. (1996) (100)
- Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics (2019) (99)
- A simple method for directional transcriptome sequencing using Illumina technology (2009) (99)
- Molecular Analysis of incHI1 Antimicrobial Resistance Plasmids from Salmonella Serovar Typhi Strains Associated with Typhoid Fever (2003) (99)
- Comparative genomics of the emerging human pathogen Photorhabdus asymbiotica with the insect pathogen Photorhabdus luminescens (2009) (98)
- The Bordetellae: lessons from genomics (2004) (98)
- The genome sequence of the fish pathogen Aliivibrio salmonicida strain LFI1238 shows extensive evidence of gene decay (2008) (97)
- The decaying genome of Mycobacterium leprae. (2001) (96)
- Evidence for Soft Selective Sweeps in the Evolution of Pneumococcal Multidrug Resistance and Vaccine Escape (2014) (96)
- Comparative genomics of prevaccination and modern Bordetella pertussis strains (2010) (96)
- A High-Resolution View of Genome-Wide Pneumococcal Transformation (2012) (95)
- Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement (2009) (94)
- Evolution of the Rhodococcus equi vap Pathogenicity Island Seen through Comparison of Host-Associated vapA and vapB Virulence Plasmids (2008) (94)
- Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community (2017) (93)
- One Health Genomic Surveillance of Escherichia coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates from Humans versus Livestock (2018) (92)
- Staphylococcus aureus Adapts to Oxidative Stress by Producing H2O2-Resistant Small-Colony Variants via the SOS Response (2015) (92)
- The Impact of Recombination on dN/dS within Recently Emerged Bacterial Clones (2011) (92)
- Erratum: Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence (1998) (91)
- Genomics of Mycobacterium bovis. (2001) (90)
- Lung function and microbiota diversity in cystic fibrosis (2020) (90)
- A non-endoscopic device to sample the oesophageal microbiota: a case-control study (2016) (90)
- Respiratory microbiota resistance and resilience to pulmonary exacerbation and subsequent antimicrobial intervention (2015) (90)
- Prevalence and properties of mecC methicillin-resistant Staphylococcus aureus (MRSA) in bovine bulk tank milk in Great Britain (2013) (90)
- Public Health Value of Next-Generation DNA Sequencing of Enterohemorrhagic Escherichia coli Isolates from an Outbreak (2012) (89)
- Comprehensive global genome dynamics of Chlamydia trachomatis show ancient diversification followed by contemporary mixing and recent lineage expansion (2017) (88)
- Genome sequence of Staphylococcus lugdunensis N920143 allows identification of putative colonization and virulence factors (2011) (87)
- Species-wide whole genome sequencing reveals historical global spread and recent local persistence in Shigella flexneri (2015) (87)
- Bacterial epidemiology and biology - lessons from genome sequencing (2011) (87)
- PolyTB: A genomic variation map for Mycobacterium tuberculosis (2014) (87)
- Early insights into the potential of the Oxford Nanopore MinION for the detection of antimicrobial resistance genes (2015) (87)
- Complete Genome of Acute Rheumatic Fever-Associated Serotype M5 Streptococcus pyogenes Strain Manfredo (2006) (87)
- Gut microbiota trajectory in early life may predict development of celiac disease (2018) (86)
- SpolPred: rapid and accurate prediction of Mycobacterium tuberculosis spoligotypes from short genomic sequences (2012) (86)
- Genome mining identifies cepacin as a plant-protective metabolite of the biopesticidal bacterium Burkholderia ambifaria (2019) (86)
- Multidrug-Resistant Salmonella enterica Serovar Paratyphi A Harbors IncHI1 Plasmids Similar to Those Found in Serovar Typhi (2007) (84)
- Complete Nucleotide Sequence of the Conjugative Tetracycline Resistance Plasmid pFBAOT6, a Member of a Group of IncU Plasmids with Global Ubiquity (2004) (84)
- Interacting networks of resistance, virulence and core machinery genes identified by genome-wide epistasis analysis (2016) (83)
- Genetic Basis for Lipopolysaccharide O-Antigen Biosynthesis in Bordetellae (1999) (82)
- The Flag-2 Locus, an Ancestral Gene Cluster, Is Potentially Associated with a Novel Flagellar System from Escherichia coli (2005) (82)
- Prevalence and characterization of human mecC methicillin-resistant Staphylococcus aureus isolates in England (2013) (80)
- Fighting Obesity with Bacteria (2013) (80)
- Novel Determinants of Antibiotic Resistance: Identification of Mutated Loci in Highly Methicillin-Resistant Subpopulations of Methicillin-Resistant Staphylococcus aureus (2014) (80)
- Rapid Virulence Annotation (RVA): Identification of virulence factors using a bacterial genome library and multiple invertebrate hosts (2008) (80)
- A Staphylococcus xylosus Isolate with a New mecC Allotype (2012) (80)
- Evolution and Epidemiology of Multidrug-Resistant Klebsiella pneumoniae in the United Kingdom and Ireland (2017) (79)
- Comparison of the Genome Sequence of the Poultry Pathogen Bordetella avium with Those of B. bronchiseptica, B. pertussis, and B. parapertussis Reveals Extensive Diversity in Surface Structures Associated with Host Interaction (2006) (79)
- Genome of the Actinomycete Plant Pathogen Clavibacter michiganensis subsp. sepedonicus Suggests Recent Niche Adaptation (2008) (79)
- Resolution of a Meningococcal Disease Outbreak from Whole-Genome Sequence Data with Rapid Web-Based Analysis Methods (2012) (79)
- Dominant Role of Nucleotide Substitution in the Diversification of Serotype 3 Pneumococci over Decades and during a Single Infection (2013) (79)
- Whole Genome Sequencing Shows a Low Proportion of Tuberculosis Disease Is Attributable to Known Close Contacts in Rural Malawi (2015) (79)
- Evolution and Global Transmission of a Multidrug-Resistant, Community-Associated Methicillin-Resistant Staphylococcus aureus Lineage from the Indian Subcontinent (2019) (79)
- Split personalities. (2002) (79)
- Genome analysis of an inducible prophage and prophage remnants integrated in the Streptococcus pyogenes strain SF370. (2002) (78)
- TLR Signaling Modulates Side Effects of Anticancer Therapy in the Small Intestine (2015) (78)
- BamView: viewing mapped read alignment data in the context of the reference sequence (2010) (77)
- Genomic analysis of smooth tubercle bacilli provides insights into ancestry and pathoadaptation of Mycobacterium tuberculosis (2020) (77)
- A decade of genomic history for healthcare-associated Enterococcus faecium in the United Kingdom and Ireland (2016) (77)
- Genomic and Genetic Analysis of Bordetella Bacteriophages Encoding Reverse Transcriptase-Mediated Tropism-Switching Cassettes (2004) (77)
- Selective and Genetic Constraints on Pneumococcal Serotype Switching (2015) (76)
- Brothers in arms (2005) (76)
- Elucidating Emergence and Transmission of Multidrug-Resistant Tuberculosis in Treatment Experienced Patients by Whole Genome Sequencing (2013) (75)
- A Novel Linear Plasmid Mediates Flagellar Variation in Salmonella Typhi (2007) (75)
- A novel hybrid SCCmec-mecC region in Staphylococcus sciuri (2013) (75)
- Genetic flux over time in the Salmonella lineage (2007) (74)
- Reagent contamination can critically impact sequence-based microbiome analyses (2014) (73)
- Genome‐wide association of functional traits linked with Campylobacter jejuni survival from farm to fork (2017) (73)
- A Comprehensive Survey of Single Nucleotide Polymorphisms (SNPs) across Mycobacterium bovis Strains and M. bovis BCG Vaccine Strains Refines the Genealogy and Defines a Minimal Set of SNPs That Separate Virulent M. bovis Strains and M. bovis BCG Strains (2009) (72)
- The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex (2012) (72)
- Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing (2017) (72)
- Ankyrin repeat domain-encoding genes in the wPip strain of Wolbachia from the Culex pipiens group (2007) (72)
- Development of a Multiplex PCR Assay for Rapid Molecular Serotyping of Haemophilus parasuis (2015) (71)
- High-throughput bacterial SNP typing identifies distinct clusters of Salmonella Typhi causing typhoid in Nepalese children (2010) (71)
- Whole Genome Sequence Analysis of a Large Isoniazid-Resistant Tuberculosis Outbreak in London: A Retrospective Observational Study (2016) (71)
- The Capsule Regulatory Network of Klebsiella pneumoniae Defined by density-TraDISort (2018) (70)
- What Is Resistance? Impact of Phenotypic versus Molecular Drug Resistance Testing on Therapy for Multi- and Extensively Drug-Resistant Tuberculosis (2017) (70)
- Site-specific insertion and deletion mutants in the mer promoter-operator region of Tn501; the nineteen base-pair spacer is essential for normal induction of the promoter by MerR. (1990) (70)
- Use of Vitek 2 Antimicrobial Susceptibility Profile To Identify mecC in Methicillin-Resistant Staphylococcus aureus (2013) (69)
- Twenty-eight divergent polysaccharide loci specifying within- and amongst-strain capsule diversity in three strains of Bacteroides fragilis (2010) (69)
- Diversification of Colonization Factors in a Multidrug-Resistant Escherichia coli Lineage Evolving under Negative Frequency-Dependent Selection (2019) (69)
- The Ess/Type VII secretion system of Staphylococcus aureus shows unexpected genetic diversity (2016) (69)
- Independent evolution of the core and accessory gene sets in the genus Neisseria: insights gained from the genome of Neisseria lactamica isolate 020-06 (2010) (69)
- Interleukin 6 Increases Production of Cytokines by Colonic Innate Lymphoid Cells in Mice and Patients With Chronic Intestinal Inflammation (2015) (68)
- Genomic analysis of isolates from the United Kingdom 2012 pertussis outbreak reveals that vaccine antigen genes are unusually fast evolving. (2015) (68)
- Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history (2020) (67)
- The impact of antimicrobials on gonococcal evolution (2019) (67)
- Variable recombination dynamics during the emergence, transmission and ‘disarming’ of a multidrug-resistant pneumococcal clone (2014) (67)
- BamView: visualizing and interpretation of next-generation sequencing read alignments (2012) (66)
- Emergence of methicillin resistance predates the clinical use of antibiotics (2022) (66)
- Arginine-deprivation–induced oxidative damage sterilizes Mycobacterium tuberculosis (2018) (66)
- Rapid Whole-Genome Sequencing for Investigation of a Suspected Tuberculosis Outbreak (2012) (65)
- Genomic perspectives on the evolution and spread of bacterial pathogens (2015) (65)
- The pCoo Plasmid of Enterotoxigenic Escherichia coli Is a Mosaic Cointegrate (2005) (65)
- Global phylogeography and evolutionary history of Shigella dysenteriae type 1 (2016) (65)
- Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand (2017) (65)
- Bacterial resistances to mercury and copper (1991) (65)
- A Common Genomic Framework for a Diverse Assembly of Plasmids in the Symbiotic Nitrogen Fixing Bacteria (2008) (64)
- Genome-Based Infection Tracking Reveals Dynamics of Clostridium difficile Transmission and Disease Recurrence (2015) (64)
- Resolving the structural features of genomic islands: a machine learning approach. (2008) (64)
- Discovery and Biosynthesis of Gladiolin: A Burkholderia gladioli Antibiotic with Promising Activity against Mycobacterium tuberculosis. (2017) (64)
- Construction and characterization of a mercury‐independent MerR activator (MerRAC): transcriptional activation in the absence of Hg(II) is accompanied by DNA distortion. (1993) (64)
- Rapid single-colony whole-genome sequencing of bacterial pathogens (2013) (63)
- Genomic epidemiology of age-associated meningococcal lineages in national surveillance: an observational cohort study (2015) (62)
- Recent independent emergence of multiple multidrug-resistant Serratia marcescens clones within the United Kingdom and Ireland (2016) (61)
- Yersinia pestis pFra Shows Biovar-Specific Differences and Recent Common Ancestry with aSalmonella enterica Serovar Typhi Plasmid (2001) (61)
- Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles (2015) (61)
- The failure of different strains of Yersinia pestis to produce lipopolysaccharide O-antigen under different growth conditions is due to mutations in the O-antigen gene cluster. (2001) (61)
- A novel streptococcal integrative conjugative element involved in iron acquisition (2008) (61)
- Genomic Analysis and Comparison of Two Gonorrhea Outbreaks (2016) (61)
- Emergence of dominant toxigenic M1T1 Streptococcus pyogenes clone during increased scarlet fever activity in England: a population-based molecular epidemiological study (2019) (60)
- Multiple major disease-associated clones of Legionella pneumophila have emerged recently and independently (2016) (60)
- Genome specialization and decay of the strangles pathogen, Streptococcus equi, is driven by persistent infection (2015) (59)
- Genome flexibility in Neisseria meningitidis (2009) (59)
- Integrated chromosomal and plasmid sequence analyses reveal diverse modes of carbapenemase gene spread among Klebsiella pneumoniae (2020) (58)
- Genome-based characterization of hospital-adapted Enterococcus faecalis lineages (2016) (58)
- Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis (2018) (57)
- Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network (2016) (57)
- Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland (2016) (57)
- First detection of livestock-associated meticillin-resistant Staphylococcus aureus CC398 in bulk tank milk in the United Kingdom, January to July 2012. (2012) (57)
- The secondary resistome of multidrug-resistant Klebsiella pneumoniae (2017) (56)
- Stepwise pathogenic evolution of Mycobacterium abscessus (2021) (56)
- Acquisition and loss of virulence-associated factors during genome evolution and speciation in three clades of Bordetella species (2016) (55)
- Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae (2017) (55)
- Assessment of the influence of intrinsic environmental and geographical factors on the bacterial ecology of pit latrines‡ (2016) (55)
- Structure, Diversity, and Mobility of the Salmonella Pathogenicity Island 7 Family of Integrative and Conjugative Elements within Enterobacteriaceae (2012) (55)
- Variation in the Effectors of the Type III Secretion System among Photorhabdus Species as Revealed by Genomic Analysis (2004) (54)
- Defining the Estimated Core Genome of Bacterial Populations Using a Bayesian Decision Model (2014) (54)
- Genome and Transcriptome Adaptation Accompanying Emergence of the Definitive Type 2 Host-Restricted Salmonella enterica Serovar Typhimurium Pathovar (2013) (54)
- Genomic Epidemiology of Vibrio cholerae O1 Associated with Floods, Pakistan, 2010 (2014) (53)
- Emergence of a New Epidemic Neisseria meningitidis Serogroup A Clone in the African Meningitis Belt: High-Resolution Picture of Genomic Changes That Mediate Immune Evasion (2014) (53)
- Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis (2016) (52)
- Population genomic datasets describing the post-vaccine evolutionary epidemiology of Streptococcus pneumoniae (2015) (52)
- Whole-genome sequencing reveals clonal expansion of multiresistant Staphylococcus haemolyticus in European hospitals (2014) (50)
- Identification, variation and transcription of pneumococcal repeat sequences (2011) (50)
- Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment (2016) (50)
- Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA (2009) (49)
- Recombination in Streptococcus pneumoniae Lineages Increase with Carriage Duration and Size of the Polysaccharide Capsule (2016) (48)
- Phase variation of a Type IIG restriction-modification enzyme alters site-specific methylation patterns and gene expression in Campylobacter jejuni strain NCTC11168 (2016) (48)
- Comparative genome analysis of Wolbachia strain wAu (2014) (48)
- New Variant of Multidrug-Resistant Salmonella enterica Serovar Typhimurium Associated with Invasive Disease in Immunocompromised Patients in Vietnam (2018) (48)
- The multidrug-resistant PMEN1 pneumococcus is a paradigm for genetic success (2012) (48)
- Changing the paradigm for hospital outbreak detection by leading with genomic surveillance of nosocomial pathogens (2018) (48)
- Evaluation of an Optimal Epidemiological Typing Scheme for Legionella pneumophila with Whole-Genome Sequence Data Using Validation Guidelines (2016) (48)
- Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom (2018) (48)
- Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity (2012) (47)
- Unlocking the genome of the human typhoid bacillus. (2002) (46)
- Emergence of host-adapted Salmonella Enteritidis through rapid evolution in an immunocompromised host (2016) (45)
- A Study on the Geophylogeny of Clinical and Environmental Vibrio cholerae in Kenya (2013) (45)
- Fluorescence-Based Flow Sorting in Parallel with Transposon Insertion Site Sequencing Identifies Multidrug Efflux Systems in Acinetobacter baumannii (2016) (45)
- Whole-Genome Sequencing Confirms that Burkholderia pseudomallei Multilocus Sequence Types Common to Both Cambodia and Australia Are Due to Homoplasy (2014) (44)
- Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data (2018) (44)
- A small predatory core genome in the divergent marine Bacteriovorax marinus SJ and the terrestrial Bdellovibrio bacteriovorus (2012) (44)
- Emergent and evolving antimicrobial resistance cassettes in community-associated fusidic acid and meticillin-resistant Staphylococcus aureus (2015) (44)
- Genetic Characterisation of Malawian Pneumococci Prior to the Roll-Out of the PCV13 Vaccine Using a High-Throughput Whole Genome Sequencing Approach (2012) (43)
- Whole-genome sequencing to establish relapse or reinfection with Mycobacterium tuberculosis : a retrospective observational study (2013) (43)
- Global Phylogenomic Analysis of Nonencapsulated Streptococcus pneumoniae Reveals a Deep-Branching Classic Lineage That Is Distinct from Multiple Sporadic Lineages (2014) (43)
- Citrobacter rodentium is an Unstable Pathogen Showing Evidence of Significant Genomic Flux (2011) (43)
- The Microevolution and Epidemiology of Staphylococcus aureus Colonization during Atopic Eczema Disease Flare (2017) (43)
- Multiple inverted DNA repeats of Bacteroides fragilis that control polysaccharide antigenic variation are similar to the hin region inverted repeats of Salmonella typhimurium. (2003) (42)
- Time between Collection and Storage Significantly Influences Bacterial Sequence Composition in Sputum Samples from Cystic Fibrosis Respiratory Infections (2014) (42)
- The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis (2014) (42)
- Phylogenetically informative mutations in genes implicated in antibiotic resistance in Mycobacterium tuberculosis complex (2020) (42)
- Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis (2020) (41)
- Improved Prediction of Bacterial Genotype-Phenotype Associations Using Interpretable Pangenome-Spanning Regressions (2020) (40)
- Comparison of bacterial genome assembly software for MinION data and their applicability to medical microbiology (2016) (40)
- Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis (2017) (39)
- Comparative genomics and proteomics of Helicobacter mustelae, an ulcerogenic and carcinogenic gastric pathogen (2010) (39)
- Generating whole bacterial genome sequences of low-abundance species from complex samples with IMS-MDA (2013) (39)
- Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era (2021) (39)
- Tyrosine site‐specific recombinases mediate DNA inversions affecting the expression of outer surface proteins of Bacteroides fragilis (2004) (39)
- Pivotal Roles for pH, Lactate, and Lactate-Utilizing Bacteria in the Stability of a Human Colonic Microbial Ecosystem (2020) (39)
- Agricultural intensification and the evolution of host specialism in the enteric pathogen Campylobacter jejuni (2020) (38)
- Genomic identification of cryptic susceptibility to penicillins and β-lactamase inhibitors in methicillin-resistant Staphylococcus aureus (2019) (38)
- A longitudinal study of the infant nasopharyngeal microbiota: The effects of age, illness and antibiotic use in a cohort of South East Asian children (2017) (38)
- Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events (2017) (38)
- Evaluation of phylogenetic reconstruction methods using bacterial whole genomes: a simulation based study (2018) (38)
- Seeding and Establishment of Legionella pneumophila in Hospitals: Implications for Genomic Investigations of Nosocomial Legionnaires’ Disease (2017) (38)
- Mutations in the MAB_2299c TetR Regulator Confer Cross-Resistance to Clofazimine and Bedaquiline in Mycobacterium abscessus (2018) (38)
- Identification of DNA markers for a transmissible Pseudomonas aeruginosa cystic fibrosis strain. (2005) (38)
- Evolution of the Staphylococcus argenteus ST2250 Clone in Northeastern Thailand Is Linked with the Acquisition of Livestock-Associated Staphylococcal Genes (2017) (38)
- In-depth genetic analysis of Clostridium difficile PCR-ribotype 027 strains reveals high genome fluidity including point mutations and inversions (2010) (37)
- Sequence and Analysis of a Plasmid-Encoded Mercury Resistance Operon from Mycobacterium marinum Identifies MerH, a New Mercuric Ion Transporter (2008) (37)
- Investigations into genome diversity of Haemophilus influenzae using whole genome sequencing of clinical isolates and laboratory transformants (2012) (37)
- Characterisation and distribution of a cryptic Salmonella typhi plasmid pHCM2. (2002) (36)
- Impact of carbohydrate substrate complexity on the diversity of the human colonic microbiota (2018) (36)
- Replacement of Adenylate Cyclase Toxin in a Lineage of Bordetella bronchiseptica (2008) (36)
- Sequence-based analysis of pQBR103; a representative of a unique, transfer-proficient mega plasmid resident in the microbial community of sugar beet (2007) (36)
- Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates (2018) (36)
- Gene Content and Diversity of the Loci Encoding Biosynthesis of Capsular Polysaccharides of the 15 Serovar Reference Strains of Haemophilus parasuis (2013) (35)
- Genomic Profiling Reveals Distinct Routes To Complement Resistance in Klebsiella pneumoniae (2020) (34)
- Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila (2017) (34)
- A One Health Study of the Genetic Relatedness of Klebsiella pneumoniae and Their Mobile Elements in the East of England (2019) (34)
- The Murray collection of pre-antibiotic era Enterobacteriacae: a unique research resource (2015) (34)
- Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974 (2013) (34)
- Pan-genomic perspective on the evolution of the Staphylococcus aureus USA300 epidemic (2016) (33)
- Genomic Analysis of Companion Rabbit Staphylococcus aureus (2016) (33)
- Sharing of carbapenemase-encoding plasmids between Enterobacteriaceae in UK sewage uncovered by MinION sequencing (2017) (33)
- Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom (2017) (33)
- Systematic Surveillance Detects Multiple Silent Introductions and Household Transmission of Methicillin-Resistant Staphylococcus aureus USA300 in the East of England (2016) (33)
- Transcriptional Regulation of Culex pipiens Mosquitoes by Wolbachia Influences Cytoplasmic Incompatibility (2013) (33)
- Genomic Analysis of Salmonella enterica Serovar Typhimurium from Wild Passerines in England and Wales (2016) (32)
- Quantifying acquisition and transmission of Enterococcus faecium using genomic surveillance (2020) (32)
- Zero tolerance for healthcare-associated MRSA bacteraemia: is it realistic? (2014) (32)
- Whole Genome Sequencing for Determining the Source of Mycobacterium bovis Infections in Livestock Herds and Wildlife in New Zealand (2018) (32)
- Chemokine (C-C Motif) Receptor 2 Mediates Dendritic Cell Recruitment to the Human Colon but Is Not Responsible for Differences Observed in Dendritic Cell Subsets, Phenotype, and Function Between the Proximal and Distal Colon (2015) (32)
- The Impact of NOD2 Variants on Fecal Microbiota in Crohn’s Disease and Controls Without Gastrointestinal Disease (2018) (32)
- Emergence of host-adapted Salmonella Enteritidis through rapid evolution in an immunocompromised host. (2016) (32)
- Implications of multiple freeze-thawing on respiratory samples for culture-independent analyses✩ (2014) (31)
- Genomic surveillance of Escherichia coli ST131 identifies local expansion and serial replacement of subclones (2019) (31)
- Definition of a major p53 binding site on Ad2E1B58K protein and a possible nuclear localization signal on the Ad12E1B54K protein (1999) (31)
- Old Drugs To Treat Resistant Bugs: Methicillin-Resistant Staphylococcus aureus Isolates with mecC Are Susceptible to a Combination of Penicillin and Clavulanic Acid (2015) (31)
- Limited contribution of non-intensive chicken farming to ESBL-producing Escherichia coli colonization in humans in Vietnam: an epidemiological and genomic analysis (2019) (31)
- Expression of Cellulosome Components and Type IV Pili within the Extracellular Proteome of Ruminococcus flavefaciens 007 (2013) (30)
- Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment (2019) (30)
- Author Correction: Human placenta has no microbiome but can contain potential pathogens (2019) (30)
- A novel Ancestral Beijing sublineage of Mycobacterium tuberculosis suggests the transition site to Modern Beijing sublineages (2019) (30)
- Transient Silencing of Antibiotic Resistance by Mutation Represents a Significant Potential Source of Unanticipated Therapeutic Failure (2019) (30)
- Transmission of methicillin-resistant Staphylococcus aureus in long-term care facilities and their related healthcare networks (2016) (30)
- Incidence and Characterisation of Methicillin-Resistant Staphylococcus aureus (MRSA) from Nasal Colonisation in Participants Attending a Cattle Veterinary Conference in the UK (2013) (30)
- Clinical and laboratory-induced colistin-resistance mechanisms in Acinetobacter baumannii (2019) (30)
- Whole-genome sequencing of multidrug-resistant Mycobacterium tuberculosis isolates from Myanmar (2016) (30)
- The widespread use of topical antimicrobials enriches for resistance in Staphylococcus aureus isolated from patients with atopic dermatitis† (2018) (29)
- The extant World War 1 dysentery bacillus NCTC1: a genomic analysis (2014) (29)
- Identification and Characterization of Genetic Determinants of Isoniazid and Rifampicin Resistance in Mycobacterium tuberculosis in Southern India (2019) (29)
- Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches (2017) (29)
- Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis (2015) (29)
- Single-molecule sequencing reveals the molecular basis of multidrug-resistance in ST772 methicillin-resistant Staphylococcus aureus (2015) (29)
- What’s in a Name? Species-Wide Whole-Genome Sequencing Resolves Invasive and Noninvasive Lineages of Salmonella enterica Serotype Paratyphi B (2016) (29)
- Microbiota That Affect Risk for Shigellosis in Children in Low-Income Countries (2015) (29)
- Population Structure of Multidrug-Resistant Klebsiella oxytoca within Hospitals across the United Kingdom and Ireland Identifies Sharing of Virulence and Resistance Genes with K. pneumoniae (2017) (29)
- MRSA Transmission Dynamics Among Interconnected Acute, Intermediate-Term, and Long-Term Healthcare Facilities in Singapore. (2017) (28)
- Global Scale Dissemination of ST93: A Divergent Staphylococcus aureus Epidemic Lineage That Has Recently Emerged From Remote Northern Australia (2018) (28)
- Mycobacterium abscessus Complex Identification with Matrix-Assisted Laser Desorption Ionization–Time of Flight Mass Spectrometry (2015) (28)
- Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project. (2020) (28)
- Some Synonymous and Nonsynonymous gyrA Mutations in Mycobacterium tuberculosis Lead to Systematic False-Positive Fluoroquinolone Resistance Results with the Hain GenoType MTBDRsl Assays (2017) (27)
- Genome-wide epistasis and co-selection study using mutual information (2019) (27)
- Relative abundance of the Prevotella genus within the human gut microbiota of elderly volunteers determines the inter-individual responses to dietary supplementation with wheat bran arabinoxylan-oligosaccharides (2020) (27)
- Genome-wide mutational biases fuel transcriptional diversity in the Mycobacterium tuberculosis complex (2019) (26)
- Adenovirus type 12 early region 1B 54K protein significantly extends the life span of normal mammalian cells in culture (1997) (26)
- Fibrinogen‐binding and platelet‐aggregation activities of a Lactobacillus salivarius septicaemia isolate are mediated by a novel fibrinogen‐binding protein (2012) (26)
- Improved characterisation of MRSA transmission using within-host bacterial sequence diversity (2019) (26)
- Genomic surveillance of Escherichia coli in municipal wastewater treatment plants as an indicator of clinically relevant pathogens and their resistance genes (2019) (26)
- Reclassification of the Specialized Metabolite Producer Pseudomonas mesoacidophila ATCC 31433 as a Member of the Burkholderia cepacia Complex (2017) (26)
- The Influence of HIV on the Evolution of Mycobacterium tuberculosis (2017) (26)
- Emergence and dissemination of antimicrobial resistance in Escherichia coli causing bloodstream infections in Norway in 2002-17: a nationwide, longitudinal, microbial population genomic study. (2021) (25)
- Whole genome investigation of a divergent clade of the pathogen Streptococcus suis (2015) (25)
- Dissemination of Mycobacterium abscessus via global transmission networks (2021) (25)
- Co-evolutionary signals identify Burkholderia pseudomallei survival strategies in a hostile environment. (2021) (25)
- Read and assembly metrics inconsequential for clinical utility of whole-genome sequencing in mapping outbreaks (2013) (25)
- Genomic characterization of novel Neisseria species (2019) (25)
- Batch effects account for the main findings of an in utero human intestinal bacterial colonization study (2021) (25)
- Genome Sequence of the Zoonotic Pathogen Chlamydophila psittaci (2010) (24)
- Detection of livestock-associated meticillin-resistant Staphylococcus aureus CC398 in retail pork, United Kingdom, February 2015. (2015) (24)
- Lineage-specific Virulence Determinants of Haemophilus influenzae Biogroup aegyptius (2012) (24)
- Genomic diversity of Salmonella enterica -The UoWUCC 10K genomes project (2021) (24)
- Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients (2017) (24)
- Transposon Insertion Sequencing Elucidates Novel Gene Involvement in Susceptibility and Resistance to Phages T4 and T7 in Escherichia coli O157 (2018) (24)
- The dissemination of multidrug-resistant Enterobacter cloacae throughout the UK and Ireland (2016) (24)
- O-Antigen-Dependent Colicin Insensitivity of Uropathogenic Escherichia coli (2018) (23)
- An unusual Burkholderia gladioli double chain-initiating nonribosomal peptide synthetase assembles ‘fungal’ icosalide antibiotics† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c8sc04897e (2019) (23)
- Understanding pneumococcal serotype 1 biology through population genomic analysis (2016) (23)
- Domestication of Campylobacter jejuni NCTC 11168 (2019) (23)
- Survey of Culture, GoldenGate Assay, Universal Biosensor Assay, and 16S rRNA Gene Sequencing as Alternative Methods of Bacterial Pathogen Detection (2013) (23)
- Defining the ABC of gene essentiality in streptococci (2017) (23)
- The Distribution and ‘In Vivo’ Phase Variation Status of Haemoglobin Receptors in Invasive Meningococcal Serogroup B Disease: Genotypic and Phenotypic Analysis (2013) (23)
- Streptococcus suis contains multiple phase-variable methyltransferases that show a discrete lineage distribution (2018) (23)
- Convergent evolution and topologically disruptive polymorphisms among multidrug-resistant tuberculosis in Peru (2017) (22)
- Genomic variations leading to alterations in cell morphology of Campylobacter spp (2016) (22)
- Genomic information infrastructure after the deluge (2010) (22)
- Complete Assembly of Escherichia coli Sequence Type 131 Genomes Using Long Reads Demonstrates Antibiotic Resistance Gene Variation within Diverse Plasmid and Chromosomal Contexts (2019) (22)
- Identification of Tse8 as a Type VI secretion system toxin from Pseudomonas aeruginosa that targets the bacterial transamidosome to inhibit protein synthesis in prey cells (2021) (22)
- Global Phylogeny of Shigella sonnei Strains from Limited Single Nucleotide Polymorphisms (SNPs) and Development of a Rapid and Cost-Effective SNP-Typing Scheme for Strain Identification by High-Resolution Melting Analysis (2012) (22)
- Molecular epidemiology and expression of capsular polysaccharides in Staphylococcus aureus clinical isolates in the United States (2019) (22)
- The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study (2019) (22)
- Population genetic structuring of methicillin-resistant Staphylococcus aureus clone EMRSA-15 within UK reflects patient referral patterns (2017) (22)
- Microevolution of Burkholderia pseudomallei during an Acute Infection (2014) (22)
- Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England (2017) (21)
- A dual transacylation mechanism for polyketide synthase chain release in enacyloxin antibiotic biosynthesis (2019) (21)
- Travel- and Community-Based Transmission of Multidrug-Resistant Shigella sonnei Lineage among International Orthodox Jewish Communities (2016) (21)
- Locally Confined Clonal Complexes of Mycobacterium ulcerans in Two Buruli Ulcer Endemic Regions of Cameroon (2015) (21)
- Genomic epidemiology of a national outbreak of post-surgical Mycobacterium abscessus wound infections in Brazil (2017) (21)
- ‘Going wrong with confidence’: misleading sequence analyses of CiaB and ClpX (1999) (20)
- Role of Alanine Racemase Mutations in Mycobacterium tuberculosis d-Cycloserine Resistance (2017) (20)
- Circlator: automated circularization of genome assemblies using long sequencing reads (2015) (20)
- Complete Genome Sequence of Pseudomonas aeruginosa Reference Strain PAK (2019) (20)
- Increasing incidence of group B streptococcus neonatal infections in the Netherlands is associated with clonal expansion of CC17 and CC23 (2020) (20)
- Leapfrogging laboratories: the promise and pitfalls of high-tech solutions for antimicrobial resistance surveillance in low-income settings (2020) (20)
- Engineering bacteriocin‐mediated resistance against the plant pathogen Pseudomonas syringae (2019) (20)
- Molecular epidemiology and whole genome sequencing analysis of clinical Mycobacterium bovis from Ghana (2018) (19)
- Induction of bacterial mercury- and copper-responsive promoters: Functional differences between inducible systems and implications for their use in gene-fusions for in vivo metal biosensors (1995) (19)
- Limited Impact of Adolescent Meningococcal ACWY Vaccination on Neisseria meningitidis Serogroup W Carriage in University Students (2018) (19)
- Comparative Genomic Analysis of Meningitis- and Bacteremia-Causing Pneumococci Identifies a Common Core Genome (2015) (19)
- Prospective genomic surveillance of methicillin-resistant Staphylococcus aureus (MRSA) associated with bloodstream infection, England, 1 October 2012 to 30 September 2013 (2019) (18)
- Human placenta has no microbiome but can contain potential pathogens (2019) (18)
- Pathogenomics of non-pathogens (2004) (18)
- dfrA thyA Double Deletion in para-Aminosalicylic Acid-Resistant Mycobacterium tuberculosis Beijing Strains (2016) (18)
- Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin (2018) (18)
- Kill and cure: genomic phylogeny and bioactivity of Burkholderia gladioli bacteria capable of pathogenic and beneficial lifestyles (2021) (18)
- Role of Conjugative Elements in the Evolution of the Multidrug-Resistant Pandemic Clone Streptococcus pneumoniae ST81 † (2009) (17)
- Consequences of whiB7 (Rv3197A) Mutations in Beijing Genotype Isolates of the Mycobacterium tuberculosis Complex (2013) (17)
- Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center (2019) (17)
- Genomics: Relative pathogenic values (2003) (17)
- Gut microbiomes from Gambian infants reveal the development of a non-industrialized Prevotella-based trophic network (2021) (17)
- Genomic Dissection of an Icelandic Epidemic of Respiratory Disease in Horses and Associated Zoonotic Cases (2017) (16)
- What has high-throughput sequencing ever done for us? (2013) (16)
- Investigating the Campylobacter jejuni Transcriptional Response to Host Intestinal Extracts Reveals the Involvement of a Widely Conserved Iron Uptake System (2018) (16)
- Selection and characterization of mercury-independent activation mutants of the Tn501 transcriptional regulator, MerR. (1998) (16)
- Community outbreaks of group A Streptococcus revealed by genome sequencing (2017) (16)
- Genomic survey of Clostridium difficile reservoirs in the East of England implicates environmental contamination of wastewater treatment plants by clinical lineages (2018) (16)
- Multi-Compartment Profiling of Bacterial and Host Metabolites Identifies Intestinal Dysbiosis and Its Functional Consequences in the Critically Ill Child (2019) (15)
- Detecting eukaryotic microbiota with single-cell sensitivity in human tissue (2018) (15)
- Complete Genome Sequence of Bordetella pertussis D420 (2015) (15)
- A global genomic approach uncovers novel components for twitching motility-mediated biofilm expansion in Pseudomonas aeruginosa (2018) (15)
- Correction: Signatures of Adaptation in Human Invasive Salmonella Typhimurium ST313 Populations from Sub-Saharan Africa (2015) (15)
- Phenotypic and Genomic Analysis of Hypervirulent Human-associated Bordetella bronchiseptica (2012) (14)
- Questioning the fetal microbiome illustrates pitfalls of low-biomass microbial studies (2023) (14)
- In defense of complete genomes (2000) (14)
- Identifying virulence determinants of multidrug-resistant Klebsiella pneumoniae in Galleria mellonella (2020) (14)
- Robust high throughput prokaryote de novo assembly and improvement pipeline for Illumina data (2016) (14)
- Evolutionary strategies of human pathogens. (2003) (13)
- Fetal inheritance of chromosomally integrated HHV-6 predisposes to preeclampsia in the mother (2020) (13)
- Genomes beyond compare (2004) (13)
- Fetal inheritance of chromosomally integrated human herpesvirus 6 predisposes the mother to pre-eclampsia (2020) (13)
- Genetic variation regulates the activation and specificity of Restriction-Modification systems in Neisseria gonorrhoeae (2019) (12)
- Bacillary dysentery from World War 1 and NCTC1, the first bacterial isolate in the National Collection (2014) (12)
- Defining nosocomial transmission of Escherichia coli and antimicrobial resistance genes: a genomic surveillance study (2021) (12)
- Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei (2019) (12)
- 16S rRNA gene-based profiling of the human infant gut microbiota is strongly influenced by sample processing and PCR primer choice (2015) (12)
- Mechanisms of β-lactam resistance of Streptococcus uberis isolated from bovine mastitis cases. (2020) (12)
- Staphylococcus pseudoxylosus sp. nov., isolated from bovine mastitis. (2019) (12)
- Investigation of a Cluster of Sequence Type 22 Methicillin-Resistant Staphylococcus aureus Transmission in a Community Setting (2017) (11)
- Contributions of the genome sequence of Erwinia amylovora to the fire blight community (2008) (11)
- Inferring Mycobacterium bovis transmission between cattle and badgers using isolates from the Randomised Badger Culling Trial (2021) (11)
- The speciation and hybridization history of the genus Salmonella (2019) (11)
- Genome-Based Analysis of Enterococcus faecium Bacteremia Associated with Recurrent and Mixed-Strain Infection (2017) (11)
- Unusual features in organisation of capsular polysaccharide-related genes of C. jejuni strain X. (2013) (11)
- High-resolution sweep metagenomics using fast probabilistic inference (2018) (11)
- Rapid detection and evolutionary analysis of Legionella pneumophila serogroup 1 sequence type 47. (2017) (10)
- Transmission of M abscessus in patients with cystic fibrosis – Authors' reply (2013) (10)
- Methodology for Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates in a Routine Hospital Microbiology Laboratory (2019) (10)
- Wild-Type and Non-Wild-Type Mycobacterium tuberculosis MIC Distributions for the Novel Fluoroquinolone Antofloxacin Compared with Those for Ofloxacin, Levofloxacin, and Moxifloxacin (2016) (10)
- Cobalamin synthesis in Yersinia enterocolitica 8081. Functional aspects of a putative metabolic island. (2003) (10)
- Fitting the niche by genomic adaptation (2003) (10)
- A highly conserved mecC-encoding SCCmec type XI in a bovine isolate of methicillin-resistant Staphylococcus xylosus (2018) (10)
- Armed to the teeth. (2002) (10)
- Pathogenomic analyses of Mycobacterium microti, an ESX-1-deleted member of the Mycobacterium tuberculosis complex causing disease in various hosts (2021) (10)
- An inter-laboratory study to investigate the impact of the bioinformatics component on microbiome analysis using mock communities (2021) (10)
- Draft Genome Sequence of the Streptococcus pneumoniae Avery Strain A66 (2015) (10)
- 'Candidatus Ornithobacterium hominis': insights gained from draft genomes obtained from nasopharyngeal swabs (2019) (10)
- The First population structure and comparative genomics analysis of Mycobacterium africanum strains from Ghana reveals higher diversity of Lineage 5 (2016) (10)
- Pathogenomics: an updated European Research Agenda. (2008) (10)
- Separating Bacteria by Capsule Amount Using a Discontinuous Density Gradient. (2019) (10)
- Genomics of the Argentinian cholera epidemic elucidate the contrasting dynamics of epidemic and endemic Vibrio cholerae (2020) (9)
- Identification and initial characterisation of a protein involved in Campylobacter jejuni cell shape (2017) (9)
- Large-scale genomic analysis of antimicrobial resistance in the zoonotic pathogen Streptococcus suis (2021) (9)
- Pilot Evaluation of a Fully Automated Bioinformatics System for Analysis of Methicillin-Resistant Staphylococcus aureus Genomes and Detection of Outbreaks (2019) (9)
- Globetrotting strangles: the unbridled national and international transmission of Streptococcus equi between horses (2021) (9)
- Pathogens in decay (2004) (8)
- Comparative Apicomplexan genomics (2005) (8)
- Emergence and genomic diversification of a virulent serogroup W:ST-2881(CC175) Neisseria meningitidis clone in the African meningitis belt (2017) (8)
- Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis (2019) (8)
- Genome-based characterization of hospital-adapted Enterococcus faecalis lineages. (2016) (8)
- Spatiotemporal Co-existence of Two Mycobacterium ulcerans Clonal Complexes in the Offin River Valley of Ghana (2016) (8)
- Comment on: Characterization of the embB gene in Mycobacterium tuberculosis isolates from Barcelona and rapid detection of main mutations related to ethambutol resistance using a low-density DNA array (2014) (8)
- Defining metrics for whole-genome sequence analysis of MRSA in clinical practice (2020) (8)
- Integration of tools and resources for display and analysis of genomic data for protozoan parasites. (2005) (8)
- Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv (2020) (8)
- Author Correction: Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics (2019) (8)
- Rapid sequencing of MRSA direct from clinical plates in a routine microbiology laboratory (2019) (8)
- Nasal carriage of Staphylococcus pseudintermedius in patients with granulomatosis with polyangiitis (2018) (8)
- Staphylococcus caeli sp. nov., isolated from air sampling in an industrial rabbit holding. (2019) (7)
- Evaluation of a fully automated bioinformatics tool to predict antibiotic resistance from MRSA genomes (2020) (7)
- Fundamental differences in physiology of Bordetella pertussis dependent on the two-component system Bvg revealed by gene essentiality studies (2020) (7)
- The Significance of the CtBP — AdE1A Interaction during Viral Infection and Transformation (2007) (7)
- Restricting genome data won't stop bioterrorism (2002) (7)
- Contrasting approaches to genome-wide association studies impact the detection of resistance mechanisms in Staphylococcus aureus (2019) (7)
- Streptococcus bovimastitidis sp. nov., isolated from a dairy cow with mastitis. (2018) (7)
- All walks of life. (2003) (7)
- The hospital microbiome project: meeting report for the UK science and innovation network UK-USA workshop ‘beating the superbugs: hospital microbiome studies for tackling antimicrobial resistance’, October 14th 2013 (2014) (7)
- Genetic variation associated with infection and the environment in the accidental pathogen Burkholderia pseudomallei (2019) (7)
- Cell surface remodeling of Mycobacterium abscessus under cystic fibrosis airway growth conditions. (2020) (7)
- A mecC allotype, mecC3, in the CoNS Staphylococcus caeli, encoded within a variant SCCmecC (2018) (7)
- Population structure and transmission of Mycobacterium bovis in Ethiopia (2020) (7)
- GenomesequenceofStaphylococcus lugdunensisN 920143 allows identi ¢ cationof putative colonizationandvirulence factors (2011) (7)
- Complete assembly of Escherichia coli ST131 genomes using long reads demonstrates antibiotic resistance gene variation within diverse plasmid and chromosomal contexts (2019) (7)
- Antimicrobial exposure in sexual networks drives divergent evolution in modern gonococci (2018) (7)
- The importance of complete genome sequences. (2002) (7)
- Spatial structuring of a Legionella pneumophila population within the water system of a large occupational building (2018) (7)
- Are commercial providers a viable option for clinical bacterial sequencing? (2018) (6)
- Population-level genomics identifies the emergence and global spread of a human transmissible multidrug-resistant nontuberculous mycobacterium (2016) (6)
- Discovery of a Pseudomonas aeruginosa Type VI secretion system toxin targeting bacterial protein synthesis using a global genomics approach (2019) (6)
- A whole-genome screen identifies Salmonella enterica serovar Typhi genes involved in fluoroquinolone susceptibility (2020) (6)
- Re-annotation and re-analysis of the Campylobacter jejuni NCTC11168 genome and functional characterisation of selected genes involved in strain pathogenesis (2007) (6)
- Annotation of microbial genomes (2002) (6)
- Comparative genomics of Czech vaccine strains of Bordetella pertussis. (2018) (6)
- Erratum: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis (2015) (6)
- Time to remove the model organism blinkers. (2008) (6)
- Global spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis (2022) (6)
- Mutational spectra distinguish SARS-CoV-2 replication niches (2022) (6)
- Searching for clues. (2002) (6)
- A Novel Inducible Prophage from Burkholderia vietnamiensis G4 Is Widely Distributed across the Species and Has Lytic Activity against Pathogenic Burkholderia (2020) (5)
- The use of genome annotation data and its impact on biological conclusions (2004) (5)
- Low genomic diversity of Legionella pneumophila within clinical specimens (2018) (5)
- Publisher Correction: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis (2019) (5)
- Large scale genomic analysis shows no evidence for repeated pathogen adaptation during the invasive phase of bacterial meningitis in humans (2016) (5)
- Signatures of negative frequency dependent selection in colonisation factors and the evolution of a multi-drug resistant lineage of Escherichia coli (2018) (5)
- Association between bacterial homoplastic variants and radiological pathology in tuberculosis (2020) (5)
- A bad combination. (2003) (5)
- The value of comparison (2003) (5)
- Methodology for whole genome sequencing of MRSA in a routine hospital microbiology laboratory. (2019) (5)
- Genomic Assemblies of Members of Burkholderia and Related Genera as a Resource for Natural Product Discovery (2020) (5)
- A role for arthropods as vectors of multidrug-resistant Enterobacterales in surgical site infections from South Asia (2021) (5)
- Genomic and temporal analyses of Mycobacterium bovis in southern Brazil (2021) (5)
- Genomic analysis of carbapenemase-encoding plasmids from Klebsiella pneumoniae across Europe highlights three major patterns of dissemination (2019) (4)
- Draft genome sequence of a multidrug-resistant caprine isolate of Staphylococcus cohnii subsp. urealyticus from Tanzania encoding ermB, tet(K), dfrG, fusF and fosD. (2019) (4)
- The full monty. (1997) (4)
- Surveillance and Epidemiology of Drug Resistant Infections Consortium (SEDRIC): Supporting the transition from strategy to action (2018) (4)
- Mycobacterium abscessus pathogenesis identified by phenogenomic analyses (2022) (4)
- Within-Host Sampling of a Natural Population Shows Signs of Selection on Pde1 during Bacterial Meningitis (2017) (4)
- Explorer The Impact of Different DNA Extraction Kits and Laboratories upon the Assessment of Human Gut Microbiota Composition by 16 S rRNA Gene Sequencing (2017) (4)
- Microbial genomics. Dynamic duos. (2001) (4)
- A scalable analytical approach from bacterial genomes to epidemiology (2021) (4)
- The Genome Sequences of Three Paraburkholderia sp. Strains Isolated from Wood-Decay Fungi Reveal Them as Novel Species with Antimicrobial Biosynthetic Potential (2019) (4)
- Population genomics: modeling the new and a renaissance of the old. (2008) (4)
- Author Correction: Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis (2018) (4)
- Complete Genome Sequence of Plesiomonas shigelloides Type Strain NCTC10360 (2016) (4)
- Online Clinical Investigations (2013) (3)
- Whole-Genome Sequences of Five Strains of Kocuria rosea, NCTC2676, NCTC7514, NCTC7512, NCTC7528, and NCTC7511 (2019) (3)
- The widespread use of topical antimicrobials enriches for resistance in Staphylococcus aureus isolated from Atopic Dermatitis patients (2018) (3)
- Genomic characterisation of multidrug-resistant Escherichia coli, Klebsiella pneumoniae, and Acinetobacter baumannii in two intensive care units in Hanoi, Viet Nam: a prospective observational cohort study. (2022) (3)
- Evolution and Global Transmission of a Multidrug-Resistant, Community-Associated Methicillin-Resistant <named-content content-type='genus-species'>Staphylococcus aureus</named-content> Lineage from the Indian Subcontinent (2019) (3)
- News & CommentLost and found (2001) (3)
- Genome mining and characterisation of multiple bioactive compounds from a Burkholderia gladioli isolate collection (2016) (3)
- Erratum for Boinett et al., Complete Genome Sequence of Bordetella pertussis D420 (2015) (3)
- Single-molecule sequencing reveals the molecular basis of multidrug-resistance in ST772 methicillin-resistant Staphylococcus aureus (2015) (3)
- Methicillin resistant Staphylococcus aureus emerged long before the introduction of methicillin in to clinical practice (2017) (3)
- Erratum—Genome giants (2002) (3)
- A comprehensive portrait of antimicrobial resistance in the zoonotic pathogen Streptococcus suis (2020) (3)
- A decade of advances in transposon-insertion sequencing (2020) (3)
- Towards richer descriptions of our collection of genomes andmetagenomes (2006) (3)
- Correction: Dynamics and impact of homologous recombination on the evolution of Legionella pneumophila (2017) (3)
- Mycobacterium tuberculosis Lineages Associated with Mutations and Drug Resistance in Isolates from India (2022) (3)
- Strains: Insights into the Pneumococcal Supragenome (2007) (3)
- Faculty of 1000 evaluation for CRISPR provides acquired resistance against viruses in prokaryotes. (2007) (3)
- Erratum: Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings (2017) (2)
- Erratum: Global phylogeography and evolutionary history of Shigella dysenteriae type 1 (2016) (2)
- Cross-species evolutionary rewiring in the enteric bacteriumCampylobacter (2021) (2)
- Increased Virulence of Outer Membrane Porin Mutants of Mycobacterium abscessus (2021) (2)
- DksA is a central regulatory switch for stress protection and virulence in Acinetobacter baumannii (2021) (2)
- Genomic Profiling Reveals Distinct Routes To Complement Resistance in <named-content content-type='genus-species'>Klebsiella pneumoniae</named-content> (2020) (2)
- Contrasting patterns of longitudinal population dynamics and antimicrobial resistance mechanisms in two priority bacterial pathogens over 7 years in a single center (2019) (2)
- Genome Sequencing of a Historic Staphylococcus aureus Collection Reveals New Enterotoxin Genes and Sheds Light on the Evolution and Genomic Organization of This Key Virulence Gene Family (2021) (2)
- Biosynthesis of a 'fungal' peptide antibiotic by Burkholderia gladioli (2016) (2)
- Sequencing the environment (2004) (2)
- 1 The Wellcome Trust Sanger Institute, Genome Campus, Hinxton, Cambridge, (2010) (2)
- Antimicrobial Resistance Exchange Between Humans and Animals: Why We Need to Know More (2022) (2)
- The devil is in the detail. (2003) (2)
- Screening for Highly Transduced Genes in Staphylococcus aureus Revealed Both Lateral and Specialized Transduction (2020) (2)
- Genomic fitness profiling of Acinetobacter baumannii reveals modes of action for common biocides and mechanisms of biocide-antibiotic antagonism (2021) (2)
- Complete Whole-Genome Sequences of Two Raoultella terrigena Strains, NCTC 13097 and NCTC 13098, Isolated from Human Cases (2019) (2)
- Mycobacterium tuberculosis wild-type and non-wild-type MIC distributions for the novel fluoroquinolone antofloxacin compared with ofloxacin, levofloxacin, and moxifloxacin (2016) (2)
- invasive disease in sub-Saharan Africa have a distinct genotype Typhimurium causing Salmonella Epidemic multiple drug resistant Material Supplemental (2009) (2)
- Discovery and Biosynthesis of Gladiolin : A (2017) (2)
- PowerBacGWAS: a computational pipeline to perform power calculations for bacterial genome-wide association studies (2022) (2)
- Late Breaking Abstract - Multidimensional genomic mapping reveals the pathophysiology of Mycobacterium abscessus (2018) (2)
- Mo1816 The Impact of NOD2 Variants on Gut Microbiota in Crohn's Disease and Healthy Controls (2015) (2)
- A Staphyloccocus xylosus isolate with a new mecC allotype 1 2 Running title: A new mecC allotype 3 4 (2012) (2)
- Emergence and Dissemination of Antimicrobial Resistance in Escherichia Coli Causing Bloodstream Infections: A Nationwide Longitudinal Microbial Population Genomic Cohort Study in Norway between 2002-2017 (2020) (2)
- Mobility of antimicrobial resistance across serovars and disease presentations in non-typhoidal Salmonella from animals and humans in Vietnam (2022) (2)
- A matter of fitness. (2003) (2)
- Emergence and global spread of a multidrug-resistant, community-associated MRSA lineage from the Indian subcontinent (2018) (2)
- Correction: A Common Genomic Framework for a Diverse Assembly of Plasmids in the Symbiotic Nitrogen Fixing Bacteria (2008) (2)
- Lost and found. (2001) (2)
- Metal homeostasis in Escherichia coli: The regulation of bacterial gene expression by cupric and mercuric ions. (1991) (2)
- Conservation of vaccine antigen sequences encoded by sequenced strains of Streptococcus equi subsp. equi (2021) (2)
- Investigations into genome diversity of Haemophilus influenzae using whole genome sequencing of clinical isolates and laboratory transformants (2012) (2)
- Kill and cure: genomic phylogeny and bioactivity of a diverse collection of Burkholderia gladioli bacteria capable of pathogenic and beneficial lifestyles (2020) (2)
- Draft Genome Sequence of 24570, the Type Strain of Shigella flexneri (2015) (2)
- Bacterial genotypic and patient risk factors for adverse outcomes in Escherichia coli bloodstream infections: a prospective molecular epidemiological study (2021) (2)
- High-resolution sweep metagenomics using fast probabilistic inference (2021) (2)
- Genomic Insights Into the Mechanism of Carbapenem Resistance Dissemination in Enterobacterales From a Tertiary Public Heath Setting in South Asia (2022) (2)
- Strength in diversity (2004) (2)
- Temporal population structure of invasive Group B Streptococcus during a period of rising disease incidence shows expansion of a CC17 clone (2018) (2)
- PWE-082 The Impact Of Nod2 Variants On Gut Microbiota In Crohn’s Disease And Healthy Controls (2014) (2)
- Spatial dynamics and vaccine-induced fitness changes of Bordetella pertussis (2021) (2)
- A genomic epidemiology study of multidrug-resistant Escherichia coli, Klebsiella pneumoniae and Acinetobacter baumannii in two intensive care units in Hanoi, Vietnam (2020) (2)
- The Genome of Burkholderia cenocepacia J2315, an Epidemic Pathogen of Cystic Fibrosis Patients (2009) (2)
- CCR2 mediates dendritic cell recruitment to the human colon but is not responsible for differences observed in dendritic cell subsets, phenotype and function between the proximal and distal colon (2015) (2)
- Large-scale genomic analysis of antimicrobial resistance in the zoonotic pathogen Streptococcus suis (2021) (1)
- PWE-069 Sampling Oesophageal Microbial Communities in Barrett’s Oesophagus Using Minimally Invasive and Endoscopic Methods (2016) (1)
- Electronic Access to Mycobacterium tuberculosis Sequence Data. (2001) (1)
- O03.4 Genomic Epidemiology of Neisseria Gonorrhoeae with Reduced Susceptibility to Cefixime in the United States (2013) (1)
- A two-hit epistasis model prevents core genome disharmony in recombining bacteria (2023) (1)
- Correction: Expression of Cellulosome Components and Type IV Pili within the Extracellular Proteome of Ruminococcus flavefaciens 007 (2013) (1)
- YI.4 Gonococcal Genomics Shows Impact of Recombination on Obscuring Phylogenetic Signal and Disseminating Resistance Loci (2013) (1)
- Evolutionary dynamics of methicillin-resistant Staphylococcus aureus within a healthcare system (2015) (1)
- Sequence element enrichment analysis to determine the 1 genetic basis of bacterial phenotypes 2 3 (2016) (1)
- Loss of Genomic Diversity in a Neisseria meningitidis Clone Through a Colonization Bottleneck (2018) (1)
- Reply to Dookie et al., “Whole-Genome Sequencing To Guide the Selection of Treatment for Drug-Resistant Tuberculosis” (2018) (1)
- Longitudinal genomic surveillance of MRSA reveals extensive transmission in hospitals and the community (2017) (1)
- An annotator's view. (2001) (1)
- SpeS: A Novel Superantigen and Its Potential as a Vaccine Adjuvant against Strangles (2020) (1)
- Prospective Surveillance and Rapid Whole-Genome Sequencing Detects Two Unsuspected Outbreaks of Carbapenemase-Producing Klebsiella pneumoniae in a UK Teaching Hospital (2017) (1)
- Correction for Waterfield et al., Rapid Virulence Annotation (RVA): Identification of virulence factors using a bacterial genome library and multiple invertebrate hosts (2009) (1)
- Phenotypic and Genomic Analysis of Hypervirulent Human-associated Bordetella bronchiseptica (2012) (1)
- News & CommentSibling rivalry (2002) (1)
- Genome watch: Diversity at every level (2005) (1)
- Comparative genome analysis of Wolbachia strain wAu (2014) (1)
- Limited impact of adolescent meningococcal ACWY vaccination on group (2017) (1)
- Complete Whole-Genome Sequence of Haemophilus haemolyticus NCTC 10839 (2019) (1)
- The composition and functional protein subsystems of the human nasal microbiome in granulomatosis with polyangiitis: a pilot study (2019) (1)
- Characterisation of vietnamycin: a novel Burkholderia antibiotic targeting mupirocin-resistant methicillin-resistant Staphylococcus aureus (MRSA) (2016) (1)
- Invasive Salmonella typhimurium populations from Sub-Saharan Africa: Transmission and adaptation dynamics (2014) (1)
- The hospital microbiome project: meeting report for the UK science and innovation network UK-USA workshop ‘beating the superbugs: hospital microbiome studies for tackling antimicrobial resistance’, October 14th 2013 (2014) (1)
- T4 Global spread of mycobacterium abscessus clones amongst cystic fibrosis patient (2016) (1)
- Co-evolutionary signals from Burkholderia pseudomallei genomics identify its survival strategies and highlight improving environmental health as prevention policy (2021) (1)
- The multidrug-resistant PMEN1 pneumococcus is a paradigm for genetic success (2012) (1)
- Evidence of antimicrobial resistance-conferring genetic elements among pneumococci isolated prior to 1974 (2013) (1)
- Early insights into the potential of the Oxford Nanopore MinION for antimicrobial resistance gene detection (2015) (1)
- Mycobacterium avium complex genomics and transmission in a London hospital (2022) (1)
- Atlas of group A streptococcal vaccine candidates compiled using large-scale comparative genomics (2019) (1)
- Phylogeographic variation in recombination rates within a global clone of methicillin-resistant Staphylococcus aureus (2012) (1)
- Corrigendum: Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland. (2017) (1)
- Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand (2017) (1)
- A whole-genome sequencing approach to targeting Mycobacterium tuberculosis outbreak management (2012) (1)
- Of staphs, streps and other things. (2001) (1)
- Whole-genome analysis of pathogen evolution (2007) (1)
- Eukaryotes: not beyond compare (2004) (1)
- Profiling gut microbiota and bile acid metabolism in critically ill children (2021) (1)
- Complete Genome Sequence of Neisseria weaveri Strain NCTC13585 (2016) (1)
- Global phylogenomics of multidrug-resistant Staphylococcus aureus sequence type 772: the Bengal Bay clone (2017) (1)
- Shrinking genomics (2004) (1)
- Tales of the unexpected (2005) (1)
- Engineering bacteriocin-mediated resistance against plant pathogenic bacteria in plants (2019) (1)
- Evidence for a bacterial dysbiosis in pouchitis after restorative proctocolectomy using 16 S rRNA sequencing: Preliminary report of an ongoing study (2008) (1)
- Candidatus Ornithobacterium hominis sp. nov.: insights gained from draft genomes obtained from nasopharyngeal swabs (2018) (1)
- A shared population of epidemic MRSA-15 circulates in humans and companion animals (2014) (1)
- "Antigen Discovery for Next-Generation Pertussis Vaccines using Immunoproteomics and Transposon Directed Insertion Sequencing". (2022) (1)
- 2 Bacterial Human Pathogen Genomes: an Overview (2004) (1)
- Within-host evolution of Enterococcus faecium during longitudinal carriage and transition to bloodstream infection in immunocompromised patients (2017) (0)
- aureusstant Staphylococcus in mecC Profile To Identify Use of Vitek 2 Antimicrobial Susceptibility (2013) (0)
- the causative agent of Buruli ulcer Mycobacterium ulcerans of evolution and niche adaptation inferred from the genome (2007) (0)
- 1 Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the 1 Republic of Ireland 2 (2015) (0)
- WS16.8 Whole genome sequencing provides evidence of within-patient evolution and adaptation to the lung of Mycobacterium abscessus (2014) (0)
- Genome giants. (2002) (0)
- Brothers in arms. (2021) (0)
- Lineage-specifi c Virulence Determinants of Haemophilus infl uenzae Biogroup aegyptius (2012) (0)
- M, Contributions of the Cenome Sequence of Erwinia a;nylos'ora to the Fire (2008) (0)
- Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network (2016) (0)
- Genomic identification of cryptic susceptibility to penicillins and β-lactamase inhibitors in methicillin-resistant Staphylococcus aureus (2019) (0)
- Staphylococcus Aureus BSAC study data (2015) (0)
- Comparative genomics of Brachyspira pilosicoli strains: genome rearrangements, reductions and correlation of genetic compliment with phenotypic diversity (2012) (0)
- The magnificent seven. (2003) (0)
- Temporal Fluctuations of Gut Microbiota and Bile Acid Metabolism in Critically Ill Children (2021) (0)
- Diversity at every level (2005) (0)
- Transmission of methicillin-resistant Staphylococcus aureus in long-term care facilities and their related healthcare networks (2016) (0)
- Genomic pot pourri (2004) (0)
- Predicted protein coding sequences from 616 S. pneumoniae isolates (2015) (0)
- Recognizing the reagent microbiome (2018) (0)
- P194 Molecular anatomy of invasive group A streptococcal (iGAS) isolates in England (2013) (0)
- Faculty Opinions recommendation of Assessment of whole genome amplification-induced bias through high-throughput, massively parallel whole genome sequencing. (2007) (0)
- The impact of antimicrobials on gonococcal evolution (2019) (0)
- Lung function and microbiota diversity in cystic fibrosis (2020) (0)
- Genomic Surveillance of MRSA associated with bloodstream infection in England (2019) (0)
- Increasing incidence of group B streptococcus neonatal infections in the Netherlands is associated with clonal expansion of CC17 and CC23 (2020) (0)
- The building blocks of pathogenicity. (2003) (0)
- Faculty Opinions recommendation of Frequency-dependent selection can forecast evolution in Streptococcus pneumoniae. (2020) (0)
- Genomic Dissection of an Icelandic Epidemic of Equine Respiratory Disease (2016) (0)
- A19 The impact of HIV-1 on the evolution of Mycobacterium tuberculosis (2018) (0)
- Sequencing and analysis of the genome of the Whipple's disease bacterium Tropheryma whipplei. Commentary (2003) (0)
- Colonization and transmission of Staphylococcus aureus in schools: a citizen science project. (2023) (0)
- Complete Whole-Genome Sequence of Salmonella enterica subsp. enterica Serovar Java NCTC5706 (2016) (0)
- Interacting networks of resistance , virulence and core machinery genes identified by genome-wide 1 epistasis analysis 2 Short title : Genome-wide epistasis analysis in bacteria 3 (2016) (0)
- The use of genome wide association methods to investigate pathogenicity, population structure and serovar in Haemophilus parasuis (2014) (0)
- Draft Genome Sequence of a Multiresistant Bovine Isolate of Staphylococcus lentus from Tanzania (2016) (0)
- Running Title : Emergence of distinct lineages of S . Enteritidis 66 (2016) (0)
- P1.38 Bacterial populations detected within first void urine samples of symptomatic male patients with urethritis (2017) (0)
- Size matters? (2001) (0)
- Whole-genome sequencing-a transformation in bacterial epidemiology The application of whole-genome sequencing affords the opportunity to generate bacterial nucleic acid sequence (2018) (0)
- Gut microbiomes from Gambian infants reveal the development of a non-industrialized Prevotella-based trophic network (2021) (0)
- Comparative Analysis of Salmonella Typhi Genome Sequences (2007) (0)
- 2 Evidence for Dysbiosis in Pouchitis Using 16S RRNA Sequencing (2008) (0)
- Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches (2018) (0)
- Development of a CRISPR interference system in Campylobacter jejuni (2022) (0)
- Analysis of pit latrine microbiota reveals depth-related variation in composition, and key parameters and taxa associated with latrine fill-up rate (2022) (0)
- Discovery of cepacin biosynthetic gene cluster (2019) (0)
- Defining the ABC of gene essentiality in streptococci (2017) (0)
- Erratum: Publisher Correction: Genomic signatures of human and animal disease in the zoonotic pathogen Streptococcus suis (Nature communications (2015) 6 (6740)) (2019) (0)
- The dual emergence of Salmonella Enteritidis as a cause of enterocolitis in high‐income settings and invasive nontyphoidal Salmonella disease in low‐income settings Authors (2016) (0)
- Evolution of mobile genetic element composition in an epidemic methicillin-resistant Staphylococcus aureus: temporal changes correlated with frequent loss and gain events (2017) (0)
- Sibling rivalry. (2002) (0)
- Sa1751 Interleukin-6 Drives Production of Pathogenic Cytokines by Innate Lymphoid Cells in Patients and Mice With Chronic Intestinal Inflammation (2015) (0)
- Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom (2017) (0)
- The Ess/Type VII secretion system of Staphylococcus aureus shows unexpected genetic diversity (2016) (0)
- Comparative genomic view of mechanisms of variation in Neisseria meningitidis through sequencing and analysis of a third meningococcal genome from serogroup C strain FAM18 (2005) (0)
- Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis (2018) (0)
- Correction to: Detecting eukaryotic microbiota with single-cell sensitivity in human tissue (2018) (0)
- The Stenotrophomonas maltophilia K279a genome sequence project (2004) (0)
- The gut microbiome of 7-37 month old children from The Gambia shows the development of a distinct non-industrial Prevotella-based trophic network (2021) (0)
- Comparative genomics for the identification of virulence factors in Burkholderia cepacia (2001) (0)
- Contamination Of Reagents Can Critically Impact Sequence-Based Microbiome Studies (2015) (0)
- Erratum for Kulohoma et al., Comparative Genomic Analysis of Meningitis- and Bacteremia-Causing Pneumococci Identifies a Common Core Genome (2015) (0)
- Evolutionary History and Spread of Multidrug Resistant IncHI1 Plasmids in Salmonella Typhi (2011) (0)
- Author Correction: Genome-wide analysis of multi- and extensively drug-resistant Mycobacterium tuberculosis (2018) (0)
- 706: LOSS OF FECAL MICROBIAL DENSITY AND INTESTINAL FERMENTATION EFFICIENCY IN CRITICALLY ILL CHILDREN (2018) (0)
- Co-cultivation and transcriptome sequencing of two co-existing fish pathogens Moritella viscosa and Aliivibrio wodanis (2015) (0)
- Induction of the mer operon of Tn501 by the MerR repressor/activator. (1991) (0)
- Comparative genomics of the classical Bordetella subspecies: the evolution and exchange of virulence-associated diversity amongst closely related pathogens (2012) (0)
- A Signature-Tagged Mutagenesis Strategy In Burkholderia cepacia To Identify Genes Required For In Vivo Growth And Survival . (2001) (0)
- Fetal inheritance of chromosomally integrated human herpesvirus 6 predisposes the mother to pre-eclampsia (2020) (0)
- Edinburgh Explorer Transposon Insertion Sequencing Elucidates Novel Gene Involvement in Susceptibility and Resistance to Phages T4 and T7 in O157 (2018) (0)
- MYCOBACTERIUM ABSCESSUS POINT SOURCE OUTBREAK IN THE LOCAL POTABLE WATER SUPPLY AFFECTING PEOPLE WITH CYSTIC FIBROSIS (2019) (0)
- New environments, versatile genomes (2004) (0)
- Correction to: Detecting eukaryotic microbiota with single-cell sensitivity in human tissue (2018) (0)
- Erratum: Distinct Salmonella Enteritidis lineages associated with enterocolitis in high-income settings and invasive disease in low-income settings (2017) (0)
- Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data (2018) (0)
- The pathobiology of Mycobacterium abscessus revealed through phenogenomic analysis (2021) (0)
- Secreted Protein with Host Epithelium Tuberculous Granuloma Induction via Interaction of a Bacterial (2014) (0)
- Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates (2018) (0)
- Prevalence of shared Mycobacterium abscessus complex in the Queensland cystic fibrosis population. (2018) (0)
- Detecting eukaryotic microbiota with single-cell sensitivity in human tissue (2018) (0)
- Faculty Opinions recommendation of Genome-wide experimental determination of barriers to horizontal gene transfer. (2008) (0)
- Development and validation of a CRISPR interference system for gene regulation in Campylobacter jejuni (2022) (0)
- Large-Scale Evaluation of a Rapid Fully Automated Analysis Platform to Detect and Refute Outbreaks Based on MRSA Genome Comparisons (2022) (0)
- 1 Shigella sonnei genome sequencing and phylogenetic analysis indicate recent 1 global dissemination from Europe 2 (2018) (0)
- INFECTIOUS DISEASE GENOMICS & GLOBAL HEALTH (2010) (0)
- Spot the difference (2002) (0)
- Pathovar Serovar Typhimurium Salmonella enterica Host-Restricted Accompanying Emergence of the Definitive Type 2 Genome and Transcriptome Adaptation 2013 (2013) (0)
- Improved characterisation of MRSA transmission using within-host bacterial 1 sequence diversity 2 3 (0)
- A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes (2014) (0)
- Whole genome sequencing reveals high-resolution epidemiological links between clinical and environmental Klebsiella pneumoniae (2016) (0)
- Microbial genomics: spot the difference. . . (2002) (0)
- 176. THE COMPOSITION OF THE HUMAN NASAL MICROBIOME IN GRANULOMATOSIS WITH POLYANGIITIS: A PILOT STUDY (2019) (0)
- Draft genome sequence of the Streptococcus pneumoniae Avery strain A 66 (2015) (0)
- Edinburgh Research Explorer Comparison of the genome sequence of the poultry pathogen Bordetella avium with those of B. bronchiseptica, B. pertussis, and B. parapertussis reveals extensive diversity in surface structures associated with host interaction reveals (2018) (0)
- Correction: A Common Genomic Framework for a Diverse Assembly of Plasmids in the Symbiotic Nitrogen Fixing Bacteria (2008) (0)
- Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data (2018) (0)
- Complete Genome Sequence of Uropathogenic Proteus mirabilis , a Master of both Adherence and Motility (cid:1) † (2008) (0)
- Methodswith Rapid Web-Based Analysis Outbreak from Whole-Genome Sequence Resolution of a Meningococcal Disease (2012) (0)
- High-throughput transposon mutagenesis in the family Enterobacteriaceae reveals core essential genes and rapid turnover of essentiality (2022) (0)
- Genomic and temporal analyses of Mycobacterium bovis in southern Brazil. (2021) (0)
- Dissemination of carbapenemase-producing Enterobacterales in Ireland from 2012 to 2017: a retrospective genomic surveillance study (2023) (0)
- recombinationTyphi genomes: Convergence or divergence by homologous Paratyphi Salmonella A bimodal pattern of relatedness between the (2006) (0)
- Genomes link the global spread of Burkholderia pseudomallei to human 1 movement and trade 2 3 (2017) (0)
- ALTERNATIVE TRANSMISSION PATHWAYS OF MYCOBACTERIUM ABSCESSUS GROUP (MABS) RESPIRATORY INFECTIONS (2020) (0)
- Rhizosphere In Situ Stable Isotope Probing of Methanogenic Archaea in the Rice (2014) (0)
- Livelihood hazards (2005) (0)
- The Murray collection of pre-antibiotic era Enterobacteriacae: a unique research resource (2015) (0)
- Gut microbiota trajectory in early life may predict development of celiac disease (2018) (0)
- Reagent and laboratory contamination can critically impact sequence-based microbiome analyses (2014) (0)
- Faculty Opinions recommendation of Temporal fragmentation of speciation in bacteria. (2007) (0)
- The good, the bad and the ugly? (2003) (0)
- The Dynamics of Staphylococcus aureus carriage and Comparisons by Age in Two Studies of an Investigational S aureus 4-Antigen Vaccine (SA4Ag) (2016) (0)
- Bacterial minimalism (2004) (0)
- Construction andcharacterization ofa mercury- independent MerRactivator (MerR AC):transcriptional activation intheabsence ofHg(Il) isaccompanied by DNA distortion (1993) (0)
- In Silico Spoligotyping (2012) (0)
- Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition (2014) (0)
- Identification and Characterization of Genetic Determinants of Isoniazid and Rifampicin Resistance in Mycobacterium tuberculosis in Southern India (2019) (0)
- Genomes on ice (2016) (0)
- Individual-specific changes in the human gut microbiota after challenge with enterotoxigenic Escherichia coli and subsequent ciprofloxacin treatment (2016) (0)
- Back in the limelight. (2001) (0)
- Ileal pouch microbial diversity (2011) (0)
- Modulation of the human gut microbiota by dietary fibres occurs at the species level (2016) (0)
- Evaluation of PacBio sequencing for full-length bacterial 16S rRNA gene classification (2016) (0)
- Burkholderia pseudomallei sequencing identifies genomic clades with distinct recombination, accessory, and epigenetic profiles. (2015) (0)
- Investigation of a Cluster of ST22 MRSA Transmission in a Community Setting (2017) (0)
- Running title: Multidrug resistance plasmid in Salmonella Paratyphi A (2007) (0)
- Global and regional dissemination and evolution of Burkholderia pseudomallei 1 2 (2016) (0)
- Outbreakof a Suspected Tuberculosis Rapid Whole-Genome Sequencing for (2014) (0)
- Correction for ‘ ‘ Linear-After-The-Exponential ( LATE ) – PCR : An advanced method of asymmetric PCR and its uses in quantitative real-time analysis (2009) (0)
- Table of Contents (1993) (0)
- Anticancer Therapy in the Small Intestine TLR Signaling Modulates Side Effects of (2015) (0)
- Faculty Opinions recommendation of A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action. (2006) (0)
- Gene exchange drives the ecological success of a multi-host bacterial pathogen (2018) (0)
- pertussis vaccines in four European countries. (2015) (0)
- Acquisition and loss of virulence-associated factors during genome evolution and speciation in three clades of Bordetella species (2016) (0)
- Genomic analysis of Burkholderia ambifaria identifies key specialised metabolites for biopesticidal applications (2019) (0)
- Phylogenomic exploration of the relationships between strains of Mycobacterium avium subspecies paratuberculosis (2016) (0)
- Evidence of widespread endemic populations of highly multidrug-resistant Klebsiella pneumoniae seen concurrently through the lens of two hospital intensive care units in Vietnam (2021) (0)
- Microevolution during the emergence of a monophasic 1 Salmonella Typhimurium epidemic in the United Kingdom 2 3 Running Title : Monophasic Salmonella microevolution 4 5 (2015) (0)
- , Sequence Type 239 (TW) aureus Staphylococcus Methicillin-Resistant Antiseptic-Resistant Variant of Highly Transmissible, Multi-Antibiotic- and Genome Sequence of a Recently Emerged, (2014) (0)
- Effect of inflammation on gut flora diversity in inflammatory bowel disease patients: 16S rDNA sequence analysis (2006) (0)
- A 15-YEAR SPATIOTEMPORAL ANALYSIS OF MYCOBACTERIUM TUBERCULOSIS LINEAGES 1 AND 2 IN CHIANG RAI, THAILAND (2019) (0)
- Genome mining identifies cepacin as a plant-protective metabolite of the biopesticidal bacterium Burkholderia ambifaria (2019) (0)
- SEQUENCING THE ENTIRE GENOME OF ERWINIA AMYLOVORA (2006) (0)
- Ancient DNA from dental calculus records past dietary changes (2013) (0)
- Producing polished prokaryotic pangenomes with the Panaroo pipeline (2020) (0)
- holderia gladioli double chain-initiating nonribosomal peptide synthetase assembles ‘ fungal ’ icosalide antibiotics † (2019) (0)
- Morphological, genomic and transcriptomic responses of Klebsiella pneumoniae to the last-line antibiotic colistin (2018) (0)
- Edinburgh Research Explorer Signatures of adaptation in human invasive Salmonella Typhimurium ST313 populations from sub-Saharan Africa (2018) (0)
- Co-evolutionary signals from Burkholderia pseudomallei population genomics highlight its survival strategy in a hostile environment (2020) (0)
- Genomic surveillance reveals low prevalence of livestock-associated methicillin-resistant Staphylococcus aureus in the East of England (2017) (0)
- Genomic Shift in Population Dynamics of mcr-1-positive Escherichia coli in Human Carriage. (2022) (0)
- Bacterial pathogens of man (2005) (0)
- Cystic Fibrosis Respiratory Infections Composition in Sputum Samples from Significantly Influences Bacterial Time between Collection and Storage (2014) (0)
- Community outbreaks of group A Streptococcus revealed by genome sequencing (2017) (0)
- Variable recombination dynamics during the emergence, transmission and ‘disarming’ of a multidrug-resistant pneumococcal clone (2014) (0)
- Comparative analysis of C. jejuni gene clusters involvedin CPS biosynthesis (2003) (0)
- Faculty Opinions recommendation of Autism-related dietary preferences mediate autism-gut microbiome associations. (2021) (0)
- Quantifying acquisition and transmission of Enterococcus faecium using genomic surveillance (2020) (0)
- Topical antimicrobial resistance in S. aureus from patients with AD (2018) (0)
- Plant biology: Plants transmit light down stems (2016) (0)
- Mycobacterium tuberculosis on the evolution of marinum Mycobacterium Insights from the complete genome sequence of Material Supplemental (2008) (0)
- P058 Prevalence of shared Mycobacterium abscessus complex (MABSC) in the Queensland cystic fibrosis population (2018) (0)
- Methicillin-resistant Staphylococcus aureus emerged long before the introduction of methicillin into clinical practice (2017) (0)
- Evolution of the community-onset invasive Staphylococcus argenteus ST2250 clone in northeast Thailand is linked with the acquisition of livestock-associated staphylococcal genes (2017) (0)
- Pilot evaluation of a fully automated bioinformatics system for the analysis of MRSA genomes and detection of outbreaks (2019) (0)
- 386 The genetic diversity of Staphylococcus aureus colonisation in atopic eczema disease flare (2017) (0)
- among HIV-1 patients in Israel, (2018) (0)
- Wild-Type and Non-Wild-Type Mycobacterium tuberculosis MIC Distributions for the Novel Fluoroquinolone Antofloxacin Compared with Those for Ofloxacin, Levofloxacin, and Moxifloxacin (2016) (0)
- Genome-wide host-pathogen analyses reveal genetic interaction points in tuberculosis disease (2023) (0)
- WS8.4 Temporal bacterial community dynamics of cystic fibrosis lung infections (2013) (0)
- PolyTB: A web-based resource designed to explore Mycobacterium tuberculosis complex (MTBC) genomic variation at a global scale (2014) (0)
- Fitting linear mixed models to a highly-structured dataset effectively controls for population structure in bacterial genome-wide association studies (2019) (0)
- 1 Genomic identification of cryptic susceptibility to penicillins and β-lactamase 1 inhibitors in methicillin-resistant Staphylococcus aureus 2 3 (2019) (0)
- University of Dundee Methicillin-resistant Staphylococcus aureus emerged long before the introduction of methicillin into clinical practice (2017) (0)
- mergent and evolving antimicrobial resistance cassettes in ommunity-associated fusidic acid and meticillin-resistant taphylococcus aureus (2015) (0)
- Machine-Learning Model for Prediction of Cefepime Susceptibility in Escherichia coli from Whole-Genome Sequencing Data (2023) (0)
This paper list is powered by the following services:
Other Resources About Julian Parkhill
What Schools Are Affiliated With Julian Parkhill?
Julian Parkhill is affiliated with the following schools:
