Kutlu Ö. Ülgen
#143,107
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Turkish biochemical engineer
Kutlu Ö. Ülgen's AcademicInfluence.com Rankings
Kutlu Ö. Ülgenengineering Degrees
Engineering
#8382
World Rank
#9916
Historical Rank
Applied Physics
#3384
World Rank
#3476
Historical Rank
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Engineering
Kutlu Ö. Ülgen's Degrees
- Bachelors Chemical Engineering Middle East Technical University
- Masters Biochemical Engineering Istanbul Technical University
Why Is Kutlu Ö. Ülgen Influential?
(Suggest an Edit or Addition)According to Wikipedia, Kutlu Özergin Ülgen is a Turkish biochemical engineer researching pharmacophore modelling to identify pharmacological chaperones used to treat infectious diseases, genetic diseases, and cancer. Ülgen is a professor in the department of chemical engineering at Boğaziçi University.
Kutlu Ö. Ülgen's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Bubble column reactors (2005) (931)
- The stability of enzymes after sonication (2000) (164)
- Integration of metabolome data with metabolic networks reveals reporter reactions (2006) (151)
- PHISTO: pathogen-host interaction search tool (2012) (126)
- Mathematical description of ethanol fermentation by immobilised Saccharomyces cerevisiae (1998) (88)
- Reconstruction and flux analysis of coupling between metabolic pathways of astrocytes and neurons: application to cerebral hypoxia (2007) (82)
- Infection Strategies of Bacterial and Viral Pathogens through Pathogen–Human Protein–Protein Interactions (2012) (73)
- Metabolic pathway analysis of yeast strengthens the bridge between transcriptomics and metabolic networks (2004) (68)
- A review on wax printed microfluidic paper-based devices for international health. (2017) (66)
- Advances in microfluidic devices made from thermoplastics used in cell biology and analyses. (2017) (64)
- Improvement of ethanol production from starch by recombinant yeast through manipulation of environmental factors (2002) (54)
- Effect of carbon source perturbations on transcriptional regulation of metabolic fluxes in Saccharomyces cerevisiae (2007) (46)
- Systematic analysis of transcription-level effects of neurodegenerative diseases on human brain metabolism by a newly reconstructed brain-specific metabolic network (2014) (46)
- Metabolic pathway analysis of enzyme-deficient human red blood cells. (2004) (44)
- Bioconversion of starch into ethanol by a recombinant Saccharomyces cerevisiae strain YPG-AB (2002) (40)
- Screening applications in drug discovery based on microfluidic technology. (2016) (40)
- Comparative interactomics for virus–human protein–protein interactions: DNA viruses versus RNA viruses (2017) (39)
- Integrative investigation of metabolic and transcriptomic data (2006) (37)
- Understanding signaling in yeast: Insights from network analysis (2007) (33)
- Molecular facets of sphingolipids: Mediators of diseases (2009) (32)
- Flux analysis of recombinant Saccharomyces cerevisiae YPB-G utilizing starch for optimal ethanol production (2004) (30)
- Systems biology of pathogen-host interaction: Networks of protein-protein interaction within pathogens and pathogen-human interactions in the post-genomic era (2013) (28)
- A Study on Hydrodynamics and Heat Transfer in a Bubble Column Reactor with Yeast and Bacterial Cell Suspensions (2008) (27)
- Application of supercritical gel drying method on fabrication of mechanically improved and biologically safe three-component scaffold composed of graphene oxide/chitosan/hydroxyapatite and characterization studies (2019) (25)
- Integration of Metabolic Modeling and Phenotypic Data in Evaluation and Improvement of Ethanol Production Using Respiration-Deficient Mutants of Saccharomyces cerevisiae (2008) (24)
- A systematic methodology for large scale compound screening: A case study on the discovery of novel S1PL inhibitors. (2016) (20)
- Drug targets for tumorigenesis: Insights from structural analysis of EGFR signaling network (2009) (20)
- Cybernetic modelling of growth and ethanol production in a recombinant Saccharomyces cerevisiae strain secreting a bifunctional fusion protein (2002) (20)
- Effect of inoculum type on actinorhodin production by Streptomyces coelicolor A3(2) (1995) (18)
- Modelling of calcium dynamics in brain energy metabolism and Alzheimer's disease (2005) (17)
- Analysis of Protein Adsorption to Ion Exchangers in a Finite Bath (1997) (17)
- Fabrication of cyclo olefin polymer microfluidic devices for trapping and culturing of yeast cells (2017) (16)
- Analysis of enzymopathies in the human red blood cells by constraint-based stoichiometric modeling approaches (2006) (15)
- Annotation of unknown yeast ORFs by correlation analysis of microarray data and extensive literature searches (2006) (14)
- Plasmid stability in a recombinant S cerevisiae strain secreting a bifunctional fusion protein (2001) (14)
- A Network-Based Approach on Elucidating the Multi-Faceted Nature of Chronological Aging in S. cerevisiae (2011) (13)
- Genome-Scale Metabolic Modeling for Unraveling Molecular Mechanisms of High Threat Pathogens (2020) (12)
- Quantitative description of protein adsorption by frontal analysis (2000) (12)
- Optimal substrate feeding policy for fed-batch cultures of S. cerevisiae expressing bifunctional fusion protein displaying amylolytic activities (2003) (12)
- Reconstruction of Protein-Protein Interaction Network of Insulin Signaling in Homo Sapiens (2010) (12)
- Targeting the Akt1 allosteric site to identify novel scaffolds through virtual screening (2014) (12)
- Drug target identification in sphingolipid metabolism by computational systems biology tools: Metabolic control analysis and metabolic pathway analysis (2010) (11)
- Reconstruction and crosstalk of protein-protein interaction networks of Wnt and Hedgehog signaling in Drosophila melanogaster (2011) (11)
- Recovery of antithrombin III from milk by expanded bed chromatography. (2002) (10)
- Transcriptional remodeling in response to transfer upon carbon-limited or metformin-supplemented media in S. cerevisiae and its effect on chronological life span (2015) (10)
- Systems biology of pathogen‐host interaction: Networks of protein‐protein interaction within pathogens and pathogen‐human interactions in the post‐genomic era (2012) (10)
- Recovery of actinorhodin from fermentation broth. (2001) (10)
- Investigation of novel pharmacological chaperones for Gaucher Disease. (2017) (8)
- The impact of medium acidity on the chronological life span of Saccharomyces cerevisiae – lipids, signaling cascades, mitochondrial and vacuolar functions (2014) (8)
- Assessment of crosstalks between the Snf1 kinase complex and sphingolipid metabolism in S. cerevisiae via systems biology approaches. (2013) (7)
- A structured model for intracellular EcoRI endonuclease production by recombinant E. coli 294 (2001) (7)
- Modeling of the induced expression for high-level production of a foreign protein by recombinant E. coli under the control of the T7 phage promoter (2003) (6)
- Exometabolic and transcriptional response in relation to phenotype and gene copy number in respiration‐related deletion mutants of S. cerevisiae (2008) (6)
- Sphingosine kinase 1 (SK1) allosteric inhibitors that target the dimerization site (2017) (6)
- Multiomics Approach to Novel Therapeutic Targets for Cancer and Aging-Related Diseases: Role of Sld7 in Yeast Aging Network. (2017) (5)
- Thermoplastic microfluidic bioreactors with integrated electrodes to study tumor treating fields on yeast cells. (2020) (5)
- Cell trapping microfluidic chip made of Cyclo olefin polymer enabling two concurrent cell biology experiments with long term durability (2020) (5)
- Wnt Signaling Network in Homo Sapiens (2012) (5)
- Unlocking Human Brain Metabolism by Genome-Scale and Multiomics Metabolic Models: Relevance for Neurology Research, Health, and Disease. (2018) (5)
- Drug target identification in sphingolipid metabolism by computational systems biology tools: metabolic control analysis and metabolic pathway analysis. (2010) (5)
- Advances in Genome-Scale Metabolic Modeling toward Microbial Community Analysis of the Human Microbiome. (2021) (4)
- Transfer function approach in structured modeling of recombinant yeast utilizing starch (2004) (4)
- Drug targets for tumorigenesis: insights from structural analysis of EGFR signaling network. (2009) (4)
- A Drug Repurposing and Protein-Protein Interaction Network Study of Ribosomopathies Using Yeast as a Model System. (2019) (3)
- Exploiting Pretrained Biochemical Language Models for Targeted Drug Design (2022) (3)
- Stoichiometric network reconstruction and analysis of yeast sphingolipid metabolism incorporating different states of hydroxylation (2011) (3)
- A low cost PS based microfluidic platform to investigate cell cycle towards developing a therapeutic strategy for cancer (2018) (3)
- Discovery of YopE Inhibitors by Pharmacophore-Based Virtual Screening and Docking (2013) (3)
- Inflammatory response and its relation to sphingolipid metabolism proteins: Chaperones as potential indirect anti-inflammatory agents. (2019) (2)
- Fabrication of steel displacement amplifiers integrated to microfluidic channels (2016) (2)
- Purification of TaqI endonuclease from Thermus aquaticus. (1998) (2)
- Understanding HMF Inhibition on Yeast Growth Coupled with Ethanol Production for the Improvement of Bio-Based Industrial Processes (2022) (1)
- Understanding the Link between Inflammasome and Apoptosis through the Response of THP-1 Cells against Drugs Using Droplet-Based Microfluidics (2022) (1)
- Stoichiometric network reconstruction and analysis of yeast sphingolipid metabolism: a detailed understanding of the pathway (2009) (1)
- Stoichiometric network reconstruction and analysis of yeast sphingolipid metabolism incorporating different states of hydroxylation. (2011) (1)
- Optimization of the mobile phase conditions for the purification ofTaql endonuclease (2000) (1)
- Growth of Thermus aquaticus and its TaqI endonuclease production (1999) (1)
- Preliminary Studies on Flow Assisted Propagation of Fluorescent Microbeads in Microfluidic Channels for Molecular Communication Systems (2020) (1)
- Emerging Roles for Metabolic Engineering - Understanding Primitive and Complex Metabolic Models and Their Relevance to Healthy and Diseased Kidney Podocytes (2008) (1)
- Carvacrol Enhances the Antimicrobial Potency of Berberine in Bacillus subtilis (2022) (0)
- Investigation of the relationship between sphingolipid and insulin signaling pathways (2010) (0)
- Modeling of TaqI Endonuclease Purification by HPLC (2002) (0)
- Identification of Therapeutic Targets for Medulloblastoma by Tissue-Specific Genome-Scale Metabolic Model (2023) (0)
- Understanding the ADHD-Gut Axis by Metabolic Network Analysis (2023) (0)
- Deciphering the Cross-Talk Between Sphingolipid Mechanism and Signaling Pathways in Baker's Yeast (2008) (0)
- Understanding the adaptive laboratory evolution of multiple stress‐resistant yeast strains by genome‐scale modeling (2022) (0)
- Neuroinflammation, Energy and Sphingolipid Metabolism Biomarkers Are Revealed by Metabolic Modeling of Autistic Brains (2023) (0)
- Investigation of the relationship between sphingolipid and insulin signaling pathways (2010) (0)
- Fabrication Protocol for Thermoplastic Microfluidic Devices: Nanoliter Volume Bioreactors for Cell Culturing. (2021) (0)
- Cell trapping microfluidic chip made of Cyclo olefin polymer enabling two concurrent cell biology experiments with long term durability (2020) (0)
- Real-Time Single-Cell Monitoring of Drug Effects Using Droplet-Based Microfluidic Technology: A Proof-of-Concept Study. (2021) (0)
- Investigation of The Effects of Neurological Diseases on Human Brain Metabolism by A Computational Systems Biology Approach (2012) (0)
- A low cost PS based microfluidic platform to investigate cell cycle towards developing a therapeutic strategy for cancer (2018) (0)
- Comprehensive genome-scale metabolic model of the human pathogen Cryptococcus neoformans: A platform for understanding pathogen metabolism and identifying new drug targets (2023) (0)
- Protein refolding using chemical refolding additives (2012) (0)
- Integration of transcriptome data with interaction network reveals functional connections between Snf1 kinase complex and sphingolipid metabolism in S. Cerevisiae (2012) (0)
- Fabrication of cyclo olefin polymer microfluidic devices for trapping and culturing of yeast cells (2017) (0)
- Live Cell Imaging of Peptide Uptake Using a Microfluidic Platform (2021) (0)
- Reconstruction of Wnt/Calcium signaling pathway in C. elegans (2009) (0)
- Interpreting Chemical Words of a Data-driven Segmentation Method as Protein Family Pharmacophores and Functional Groups (2022) (0)
- Structural robustness of protein interaction networks are due to modularity (2005) (0)
- In Silico Identification of Novel Orthosteric Inhibitors of Sphingosine Kinase 1 (SK1). (2016) (0)
- Application of Thermoplastic Microbioreactor to the Single Cell Study of Budding Yeast to Decipher the Effect of 5-Hydroxymethylfurfural on Growth (2019) (0)
- Transcriptional remodeling in response to transfer upon carbon-limited or metformin-supplemented media in S. cerevisiae and its effect on chronological life span (2015) (0)
- A Comprehensive Protein Interaction Network of Calcium Triggered Mechanisms in S. cerevisiae (2012) (0)
- Identification of potential Tpx inhibitors against pathogen-host interactions (2015) (0)
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