Karsten Rippe
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Karsten Rippe's Degrees
- Masters Biochemistry University of California, Berkeley
- Bachelors Biology University of California, San Diego
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(Suggest an Edit or Addition)Karsten Rippe's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Capturing Chromosome Conformation (2002) (3324)
- Patterns of somatic structural variation in human cancer genomes (2020) (377)
- Patterns of somatic structural variation in human cancer genomes (2020) (377)
- Loss of the abundant nuclear non-coding RNA MALAT1 is compatible with life and development (2012) (373)
- SIRT6 recruits SNF2H to DNA break sites, preventing genomic instability through chromatin remodeling. (2013) (316)
- Action at a distance: DNA-looping and initiation of transcription. (1995) (274)
- Histone acetylation increases chromatin accessibility (2005) (270)
- Trichostatin A-induced histone acetylation causes decondensation of interphase chromatin (2003) (249)
- Genome-wide nucleosome positioning during embryonic stem cell development (2012) (245)
- Formation of Chromatin Subcompartments by Phase Separation. (2018) (239)
- Analyses of non-coding somatic drivers in 2,658 cancer whole genomes (2020) (220)
- Comprehensive molecular characterization of mitochondrial genomes in human cancers (2017) (197)
- DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats (2017) (195)
- The 4D nucleome: Evidence for a dynamic nuclear landscape based on co‐aligned active and inactive nuclear compartments (2015) (187)
- Making contacts on a nucleic acid polymer. (2001) (185)
- Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition (2020) (180)
- Integrative genomic and transcriptomic analysis of leiomyosarcoma (2018) (174)
- HP1 is involved in regulating the global impact of DNA methylation on alternative splicing. (2015) (170)
- Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming (2020) (153)
- Transcriptional activation via DNA-looping: visualization of intermediates in the activation pathway of E. coli RNA polymerase x sigma 54 holoenzyme by scanning force microscopy. (1997) (152)
- Mouse Heterochromatin Adopts Digital Compaction States without Showing Hallmarks of HP1-Driven Liquid-Liquid Phase Separation (2020) (151)
- DNA sequence- and conformation-directed positioning of nucleosomes by chromatin-remodeling complexes (2007) (144)
- Epigenetic Upregulation of lncRNAs at 13q14.3 in Leukemia Is Linked to the In Cis Downregulation of a Gene Cluster That Targets NF-kB (2013) (140)
- Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer (2020) (128)
- Nucleosome repositioning links DNA (de)methylation and differential CTCF binding during stem cell development (2014) (125)
- Retrieving the intracellular topology from multi-scale protein mobility mapping in living cells (2014) (121)
- HMGB2 Loss upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering across Cell Types. (2018) (121)
- A 'loop recapture' mechanism for ACF-dependent nucleosome remodeling (2005) (119)
- Nuclear body movement is determined by chromatin accessibility and dynamics. (2004) (117)
- Three-dimensional organization of promyelocytic leukemia nuclear bodies (2010) (117)
- Alu element‐containing RNAs maintain nucleolar structure and function (2015) (115)
- Suv4-20h2 mediates chromatin compaction and is important for cohesin recruitment to heterochromatin. (2013) (114)
- Structure of a bacterial pyridoxal 5′-phosphate synthase complex (2006) (112)
- Nucleosome geometry and internucleosomal interactions control the chromatin fiber conformation. (2008) (108)
- NUDT9, a Member of the Nudix Hydrolase Family, Is an Evolutionarily Conserved Mitochondrial ADP-ribose Pyrophosphatase* (2003) (107)
- Alternating d(G‐A) sequences form a parallel‐stranded DNA homoduplex. (1992) (105)
- Dynamics of telomeres and promyelocytic leukemia nuclear bodies in a telomerase-negative human cell line. (2009) (101)
- TERRA and the state of the telomere (2015) (100)
- Structural insights into tail-anchored protein binding and membrane insertion by Get3 (2009) (98)
- Dual color localization microscopy of cellular nanostructures (2009) (96)
- Human ISWI chromatin-remodeling complexes sample nucleosomes via transient binding reactions and become immobilized at active sites (2010) (93)
- Environment‐induced epigenetic reprogramming in genomic regulatory elements in smoking mothers and their children (2016) (92)
- Genome organization: balancing stability and plasticity. (2008) (92)
- Predicting nucleosome positions on the DNA: combining intrinsic sequence preferences and remodeler activities (2009) (91)
- Pan-mutant-IDH1 inhibitor BAY1436032 is highly effective against human IDH1 mutant acute myeloid leukemia in vivo (2017) (91)
- Chromatin remodelling in mammalian cells by ISWI‐type complexes – where, when and why? (2011) (90)
- On the Mechanism of Nucleosome Assembly by Histone Chaperone NAP1* (2006) (89)
- Dissecting DNA-histone interactions in the nucleosome by molecular dynamics simulations of DNA unwrapping. (2011) (85)
- Analysis of Ligand Binding by Two-Colour Fluorescence Cross-Correlation Spectroscopy (2002) (83)
- Specificity, propagation, and memory of pericentric heterochromatin (2014) (81)
- Multiscale analysis of dynamics and interactions of heterochromatin protein 1 by fluorescence fluctuation microscopy. (2009) (80)
- Structure and Function of the Hetero-oligomeric Cysteine Synthase Complex in Plants* (2010) (80)
- High-precision structural analysis of subnuclear complexes in fixed and live cells via spatially modulated illumination (SMI) microscopy (2008) (78)
- Histone H2A C-Terminus Regulates Chromatin Dynamics, Remodeling, and Histone H1 Binding (2010) (77)
- NAP1 Modulates Binding of Linker Histone H1 to Chromatin and Induces an Extended Chromatin Fiber Conformation* (2005) (77)
- Genomic footprints of activated telomere maintenance mechanisms in cancer (2017) (75)
- Superhelix dimensions of a 1868 base pair plasmid determined by scanning force microscopy in air and in aqueous solution. (1997) (71)
- The effect of internucleosomal interaction on folding of the chromatin fiber. (2008) (71)
- PML induces compaction, TRF2 depletion and DNA damage signaling at telomeres and promotes their alternative lengthening (2015) (70)
- Looping dynamics of linear DNA molecules and the effect of DNA curvature: a study by Brownian dynamics simulation. (1998) (70)
- Nuclear architecture by RNA. (2012) (69)
- De novo assembly of a PML nuclear subcompartment occurs through multiple pathways and induces telomere elongation (2011) (68)
- Dynamic organization of the cell nucleus. (2007) (68)
- Dissecting intratumour heterogeneity of nodal B-cell lymphomas at the transcriptional, genetic and drug-response levels (2020) (67)
- Association states of the transcription activator protein NtrC from E. coli determined by analytical ultracentrifugation. (1998) (64)
- The GTPase cycle of the chloroplast import receptors Toc33/Toc34: implications from monomeric and dimeric structures. (2008) (64)
- Simultaneous binding of two DNA duplexes to the NtrC-enhancer complex studied by two-color fluorescence cross-correlation spectroscopy. (2000) (64)
- DNA (de)methylation in embryonic stem cells controls CTCF-dependent chromatin boundaries (2019) (64)
- Hypermutation of the Inactive X Chromosome Is a Frequent Event in Cancer (2013) (64)
- Mobility of multi-subunit complexes in the nucleus: accessibility and dynamics of chromatin subcompartments (2005) (62)
- Statistical–mechanical lattice models for protein–DNA binding in chromatin (2010) (57)
- Structure and drug interactions of parallel-stranded DNA studied by infrared spectroscopy and fluorescence. (1993) (56)
- PML body meets telomere (2012) (54)
- Genome organization and function in the cell nucleus (2011) (54)
- CHD3 and CHD4 form distinct NuRD complexes with different yet overlapping functionality (2017) (53)
- Heterochromatin Protein 1β (HP1β) has distinct functions and distinct nuclear distribution in pluripotent versus differentiated cells (2015) (52)
- Parallel-stranded duplex DNA. (1988) (51)
- Cancer Cells with Alternative Lengthening of Telomeres Do Not Display a General Hypersensitivity to ATR Inhibition (2016) (49)
- Scanning force microscopy of Escherichia coli RNA polymerase.sigma54 holoenzyme complexes with DNA in buffer and in air. (1998) (48)
- Helix-coil transition of parallel-stranded DNA. Thermodynamics of hairpin and linear duplex oligonucleotides. (1989) (47)
- Targeting chromatin remodelers: signals and search mechanisms. (2011) (47)
- The hydrogen-bonding structure in parallel-stranded duplex DNA is reverse Watson-Crick. (1991) (46)
- Transcription activation is enhanced by multivalent interactions independent of phase separation (2021) (46)
- Association States of Nucleosome Assembly Protein 1 and Its Complexes with Histones* (2005) (45)
- Dissecting chromatin interactions in living cells from protein mobility maps (2010) (42)
- DNA binding and oligomerization of NtrC studied by fluorescence anisotropy and fluorescence correlation spectroscopy. (1998) (42)
- Dynamic properties of independent chromatin domains measured by correlation spectroscopy in living cells (2016) (42)
- Coding RNAs with a non-coding function: Maintenance of open chromatin structure (2011) (42)
- Increased vitamin D levels at birth and in early infancy increase offspring allergy risk-evidence for involvement of epigenetic mechanisms. (2016) (41)
- Liquid-Liquid Phase Separation in Chromatin. (2021) (41)
- Sex differences in oncogenic mutational processes (2019) (41)
- Assembly and mobility of exon-exon junction complexes in living cells. (2009) (40)
- TelomereHunter – in silico estimation of telomere content and composition from cancer genomes (2019) (40)
- Binding kinetics of human ISWI chromatin-remodelers to DNA repair sites elucidate their target location mechanism (2011) (40)
- Telomere dysfunction and chromothripsis (2016) (39)
- Analysis of protein-DNA binding at equilibrium (1997) (39)
- Modeling nucleosome position distributions from experimental nucleosome positioning maps (2013) (38)
- A lattice model for transcription factor access to nucleosomal DNA. (2010) (37)
- Alternative lengthening of telomeres in childhood neuroblastoma from genome to proteome (2021) (36)
- Parallel-stranded duplex DNA containing blocks of trans purine-purine and purine-pyrimidine base pairs. (1994) (36)
- Inflammatory exposure drives long-lived impairment of hematopoietic stem cell self-renewal activity and accelerated aging. (2022) (35)
- Exploring the conformational space of chromatin fibers and their stability by numerical dynamic phase diagrams. (2010) (34)
- The viscoelastic properties of chromatin and the nucleoplasm revealed by scale-dependent protein mobility (2014) (34)
- High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations (2020) (34)
- Force spectroscopy of chromatin fibers: extracting energetics and structural information from Monte Carlo simulations. (2011) (34)
- Nucleosome mediated crosstalk between transcription factors at eukaryotic enhancers (2011) (34)
- Specificity mechanisms in the control of transcription. (1996) (34)
- Subcompartment Formation by Phase Separation. (2020) (33)
- Changing chromatin fiber conformation by nucleosome repositioning. (2014) (32)
- GRUU-Net: Integrated convolutional and gated recurrent neural network for cell segmentation (2019) (32)
- NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing data (2017) (32)
- A parallel stranded linear DNA duplex incorporating dG.dC base pairs. (1990) (32)
- Spectroscopic properties and helical stabilities of 25-nt parallel-stranded linear DNA duplexes. (1989) (32)
- Biochemical Characterization and Mass Spectrometric Disulfide Bond Mapping of Periplasmic α-Amylase MalS of Escherichia coli* (1997) (32)
- Conformation of reconstituted mononucleosomes and effect of linker histone H1 binding studied by scanning force microscopy. (2003) (30)
- Dissecting the nascent human transcriptome by analysing the RNA content of transcription factories (2015) (30)
- Aurora Kinase B Regulates Telomerase Activity via a Centromeric RNA in Stem Cells. (2015) (30)
- Interleukin-10 receptor signaling promotes the maintenance of a PD-1int TCF-1+ CD8+ T cell population that sustains anti-tumor immunity. (2021) (30)
- Dimerization of signalling modules of the EvgAS and BvgAS phosphorelay systems. (2000) (29)
- On the Significance of Toc-GTPase Homodimers* (2008) (29)
- Pan-Mutant-IDH1 Inhibitor Bay-1436032 Is Highly Effective Against Human IDH1 Mutant Acute Myeloid Leukemia In Vivo (2016) (28)
- Regulation of nucleolus assembly by non-coding RNA polymerase II transcripts (2016) (27)
- Subclone-specific microenvironmental impact and drug response in refractory multiple myeloma revealed by single‐cell transcriptomics (2021) (27)
- X‐ray crystal structure of Saccharomyces cerevisiae Pdx1 provides insights into the oligomeric nature of PLP synthases (2009) (26)
- Calculating transcription factor binding maps for chromatin (2012) (26)
- Taking into account nucleosomes for predicting gene expression. (2013) (25)
- TelNet - a database for human and yeast genes involved in telomere maintenance (2017) (25)
- CALORIMETRIC CHARACTERIZATION OF PARALLEL-STRANDED DNA - STABILITY, CONFORMATIONAL FLEXIBILITY, AND ION BINDING (1992) (25)
- Linking aberrant chromatin features in chronic lymphocytic leukemia to transcription factor networks (2019) (25)
- The effect of the DNA conformation on the rate of NtrC activated transcription of Escherichia coli RNA polymerase.sigma(54) holoenzyme. (2000) (25)
- Analysis of protein mobilities and interactions in living cells by multifocal fluorescence fluctuation microscopy (2009) (24)
- Establishing epigenetic domains via chromatin‐bound histone modifiers (2013) (24)
- Interactions of Histones with DNA: Nucleosome Assembly, Stability, Dynamics, and Higher Order Structure (2007) (22)
- Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (2020) (22)
- Affinity, stoichiometry and cooperativity of heterochromatin protein 1 (HP1) binding to nucleosomal arrays (2014) (21)
- Substrate properties of 25-nt parallel-stranded linear DNA duplexes. (1989) (20)
- Real-time observation of light-controlled transcription in living cells (2017) (18)
- Binding affinity of Escherichia coli RNA polymerase*sigma54 holoenzyme for the glnAp2, nifH and nifL promoters. (2002) (18)
- Nucleosome repositioning during differentiation of a human myeloid leukemia cell line (2017) (18)
- Isolation of the protein and RNA content of active sites of transcription from mammalian cells (2016) (17)
- Reactivity of parallel-stranded DNA to chemical modification reagents. (1990) (17)
- Repetitive RNAs as Regulators of Chromatin-Associated Subcompartment Formation by Phase Separation (2020) (17)
- Pheno-seq – linking visual features and gene expression in 3D cell culture systems (2019) (16)
- Quantifying transient binding of ISWI chromatin remodelers in living cells by pixel-wise photobleaching profile evolution analysis (2012) (16)
- A spherical harmonics intensity model for 3D segmentation and 3D shape analysis of heterochromatin foci (2016) (16)
- Local emergence and decline of a SARS-CoV-2 variant with mutations L452R and N501Y in the spike protein (2021) (16)
- Glioblastoma initiating cells are sensitive to histone demethylase inhibition due to epigenetic deregulation (2020) (16)
- A three‐dimensional colocalization RNA interference screening platform to elucidate the alternative lengthening of telomeres pathway (2012) (16)
- Is transcriptional regulation just going through a phase? (2021) (16)
- Loss of cooperativity of secreted CD40L and increased dose–response to IL4 on CLL cell viability correlates with enhanced activation of NF‐kB and STAT6 (2015) (15)
- Rational design and molecular characterization of a chimaeric response regulator protein. (2001) (14)
- DNA sequence-dependent formation of heterochromatin nanodomains (2020) (13)
- Retrieving Chromatin Patterns from Deep Sequencing Data Using Correlation Functions. (2017) (13)
- Expression of CCCTC‐binding factor (CTCF) is linked to poor prognosis in prostate cancer (2019) (12)
- Quantification of telomere features in tumor tissue sections by an automated 3D imaging-based workflow. (2017) (12)
- Hematopoietic stem cells fail to regenerate following inflammatory challenge (2020) (12)
- TelomereHunter: telomere content estimation and characterization from whole genome sequencing data (2016) (12)
- Structure-function relationships in the Bvg and Evg two-component phosphorelay systems. (2000) (11)
- Multi-channel Deep Transfer Learning for Nuclei Segmentation in Glioblastoma Cell Tissue Images (2018) (11)
- Parallel-stranded DNA under topological stress: rearrangement of (dA)15.(dT)15 to a d(A.A.T)n triplex. (1991) (11)
- Evolutionary dynamics and information hierarchies in biological systems (2013) (10)
- Defining the structural requirements for ribose 5‐phosphate‐binding and intersubunit cross‐talk of the malarial pyridoxal 5‐phosphate synthase (2010) (10)
- Chromatin Remodeling and Nucleosome Positioning (2011) (10)
- Comparison of segmentation methods for tissue microscopy images of glioblastoma cells (2018) (10)
- Functional organization of RNA polymerase II in nuclear subcompartments. (2022) (9)
- RNA polymerase II transcription compartments: from multivalent chromatin binding to liquid droplet formation? (2021) (9)
- Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL (2020) (9)
- Transcription activation is enhanced by multivalent interactions independent of liquid-liquid phase separation (2021) (9)
- Single-cell transcriptomes of the aging human skin reveal loss of fibroblast priming (2019) (8)
- Tethering RNA to chromatin for fluorescence microscopy based analysis of nuclear organization. (2017) (8)
- Control of APOBEC3B induction and cccDNA decay by NF-κB and miR-138-5p (2021) (8)
- Higher Order Chromatin Organization and Dynamics (2011) (8)
- Hyperparameter optimization for image analysis: application to prostate tissue images and live cell data of virus-infected cells (2019) (7)
- Histone H 2 A C-Terminus Regulates Chromatin Dynamics , Remodeling , and Histone H 1 Binding (2010) (7)
- RNA: Networks & Imaging (2006) (7)
- Dynamics of telomeres and PML nuclear bodies in a telomerase negative human cell line (2008) (7)
- Topological demarcation by HMGB2 is disrupted early upon senescence entry across cell types and induces CTCF clustering (2017) (7)
- Publisher Correction: Comprehensive analysis of chromothripsis in 2,658 human cancers using whole-genome sequencing (2020) (6)
- The Folding of the Nucleosome Chain (2011) (6)
- Dissecting telomere maintenance mechanisms in pediatric glioblastoma (2017) (6)
- Pan-cancer analysis of whole genomes identifies driver rearrangements promoted by LINE-1 retrotransposition (2020) (6)
- Molecules in Motion: Imaging DNA with the Scanning Force Microscope in Aqueous Solutions (1997) (6)
- Bayesian joint super-resolution, deconvolution, and denoising of images with Poisson-Gaussian noise (2018) (5)
- HP 1 Is Involved in Regulat ing the Global Impact of DNA Methylation on Alternative Splicing Graphical (2015) (5)
- Chapter 9:Monte Carlo Simulations of Nucleosome Chains to Identify Factors that Control DNA Compaction and Access (2012) (5)
- 3D shape analysis of heterochromatin foci based on a 3D spherical harmonics intensity model (2014) (4)
- A 3D intensity model based on spherical harmonics for automatic 3D segmentation of heterochromatin foci (2013) (4)
- Combined Model-Based and Region-Adaptive 3D Segmentation and 3D Co-Localization Analysis of Heterochromatin Foci (2012) (4)
- Methylome-based cell-of-origin modeling (Methyl-COOM) identifies aberrant expression of immune regulatory molecules in CLL (2020) (4)
- Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming (2020) (4)
- Retrieving chromatin patterns from deep sequencing data using correlation functions (2016) (4)
- Modelling TERT regulation across 19 different cancer types based on the MIPRIP 2.0 gene regulatory network approach (2019) (3)
- Identification of enhancer of mRNA decapping 4 as a novel fusion partner of MLL in acute myeloid leukemia. (2019) (3)
- Polymorphism and possible biological functions of parallel-stranded DNA (1992) (3)
- Loss of CCAAT‐enhancer‐binding protein alpha (CEBPA) is linked to poor prognosis in PTEN deleted and TMPRSS2:ERG fusion type prostate cancers (2018) (3)
- Abstract 4336: Integrative genomic and transcriptomic analysis of leiomyosarcoma (2018) (3)
- Black-Box Hyperparameter Optimization for Nuclei Segmentation in Prostate Tissue Images (2019) (3)
- Transcriptional Activation of Heterochromatin by Recruitment of dCas9 Activators. (2021) (2)
- Light-Induced Transcription Activation for Time-Lapse Microscopy Experiments in Living Cells. (2019) (2)
- The Spatial Heterogeneity in Newly Diagnosed Multiple Myeloma Patients - from Sub-Clonal Architecture to the Immune Microenvironment (2021) (2)
- KMT9 Controls Stemness and Growth of Colorectal Cancer (2021) (2)
- Erratum: DNMT and HDAC inhibitors induce cryptic transcription start sites encoded in long terminal repeats (2017) (2)
- The pre-existing T cell landscape determines the response to bispecific T cell engagers in multiple myeloma patients. (2023) (2)
- Faculty of Physics and Astronomy (2007) (2)
- Segmentation of Heterochromatin Foci Using a 3D Spherical Harmonics Intensity Model (2013) (1)
- 8 Interplay of nucleosome repositioning, DNA methylation and transcription factor binding during stem cell development (2015) (1)
- HMGB2 Loss Upon Senescence Entry Disrupts Genomic Organization and Induces CTCF Clustering Across Cell Types (2018) (1)
- Author Correction: Pan-cancer analysis of whole genomes (2023) (1)
- Modelling TERT regulation across 19 different cancer types based on the MIPRIP 2.0 gene regulatory network approach (2019) (1)
- Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer (2020) (1)
- Dissecting intratumor heterogeneity of nodal B cell lymphomas on the transcriptional, genetic, and drug response level (2019) (1)
- IgE type multiple myeloma exhibits hypermutated phenotype and tumor reactive T cells (2022) (1)
- Bone Marrow Immune Signatures in Multiple Myeloma Are Linked to Tumor Heterogeneity and Treatment Outcome (2022) (1)
- Nucleosome repositioning in chronic lymphocytic leukaemia (2022) (1)
- Transcription factor binding and activity on chromatin (2022) (1)
- PITX1 Is a Regulator of TERT Expression in Prostate Cancer with Prognostic Power (2022) (1)
- ALT-FISH quantifies alternative lengthening of telomeres activity by imaging of single-stranded repeats (2022) (1)
- Structure anddruginteractions ofparallel-strande d DNA studied byinfrared spectroscopy andfluorescence (1993) (0)
- Modeling of the Epigenome of the Cell-of-Origin Identifies Cancer-Specific DNA Methylation Patterns in CLL (2018) (0)
- Deconvolution of Hematopoietic Commitment Decisions By Genome-Wide Analysis of Progressive DNA Methylation Changes (2019) (0)
- Author Correction: Inferring structural variant cancer cell fraction (2022) (0)
- Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage (2022) (0)
- The Architects of the Archaeal Chromatin (2013) (0)
- Author Correction: Genomic footprints of activated telomere maintenance mechanisms in cancer (2020) (0)
- P-060: Subclone-specific microenvironmental impact and drug response in refractory multiple myeloma revealed by single cell transcriptomics (2021) (0)
- No Evidence for Hematopoietic Stem Cell Self-Renewal in-Vivo Following Inflammatory Challenge (2019) (0)
- OAB-002: The preexisting T cell landscape determines response to T cell-engagers therapy in multiple myeloma (2022) (0)
- Systems Biological Determination of the Epi-Genomic Structure Function Relation: (2010) (0)
- [Individual therapeutic experiments. Ethical problems exemplified in oncology]. (1999) (0)
- 5 Chromatin Remodeling and Nucleosome Positioning (2011) (0)
- Computer simulations of chromatin fibers (2009) (0)
- Dissecting Heterogeneity of Tumor Cells and Their Microenvironment in Refractory Multiple Myeloma (2019) (0)
- OAB-007: Single-cell multiomic analysis identifies regulatory programs in relapsed/refractory multiple myeloma (2021) (0)
- Ligand-Induced Conformational Transition of DNA as Studied by Infrared Spectroscopy, Infrared Linear Dichroism, Circular Dichroism, and Fluorescence Spectroscopy (1995) (0)
- HP1beta paper raw/original microscopy images (2015) (0)
- Erratum to: Dissecting chromatin interactions in living cells from protein mobility maps (2011) (0)
- Identi fi cation of enhancer of mRNA decapping 4 as a novel fusion partner of MLL in acute myeloid leukemia (2019) (0)
- OAB-027: Discovery of tumor-reactive T cell receptors in multiple myeloma (2022) (0)
- Differential expression analysis of microRNA in CLL and their influence on mRNA expression (2014) (0)
- Thermodynamics of parallel DNA - Stability and ligand binding. (1992) (0)
- Single-Cell Multi-Omics Reveal Longitudinal Dynamics of Clonal Architecture and Microenvironment Interactions in Relapsed-Refractory Myeloma (2022) (0)
- HSCs completely fail to regenerate following inflammatory challenge, leading to aged hematopoiesis (2017) (0)
- Approaches for single-cell RNA sequencing across tissues and cell types. (2023) (0)
- Integrative genomic and transcriptomic analysis of leiomyosarcoma (2018) (0)
- Author Correction: Patterns of somatic structural variation in human cancer genomes (2020) (0)
- Modeling Long Chromatin Fibers based on In-Vivo Nucleosome Positioning Maps (2013) (0)
- Author Correction: Patterns of somatic structural variation in human cancer genomes (2020) (0)
- MEDB-60. Medulloblastoma with extensive nodularity mimics cerebellar development and differentiates along the granular precursor lineage (2022) (0)
- pheno-seq – linking morphological features to gene expression in 3D cell culture systems (2018) (0)
- Characterizing mitochondrial function and structure – Mitochondrial regulation of apoptosis and visualization of mitochondria-endoplasmic reticulum interactions (2014) (0)
- Assessing the Phase Separation Propensity of Proteins in Living Cells Through Optodroplet Formation. (2023) (0)
- Modeling Effects of Nucleosome Positioning in Short and Long Chromatin Fibers (2014) (0)
- Author Correction: Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples (2020) (0)
- Epigenetic reprogramming in regulatory elements (2017) (0)
- An apparatus for multi-focal confocal mirkoskopischen determination of the spatial distribution and to multifocal fluctuation analysis of fluorescent molecules and structures with flexible detection spectrally (2005) (0)
- Computer Simulation of Chromatin: Interdependency Between Nucleosome Positions and Chromatin Structure (2012) (0)
- NucTools: analysis of chromatin feature occupancy profiles from high-throughput sequencing data (2017) (0)
- Dynamic properties of independent chromatin domains measured by correlation spectroscopy in living cells (2016) (0)
- Abstract 2284: Dissecting signaling networks involved in the tumor-microenvironment crosstalk in chronic lymphocytic leukemia (CLL) (2010) (0)
- Retrieving the topology of chromatin domains from deep sequencing data with correlation functions (2016) (0)
- Beyond the gel: The Physical Basis of Biochemistry, by Peter R. Bergethon (1999) (0)
- Crystal structure of Toc33 from Arabidopsis thaliana, dimerization deficient mutant R130A (2008) (0)
- TelNet - a database for human and yeast genes involved in telomere maintenance (2018) (0)
- 6 The Folding of the Nucleosome Chain (2011) (0)
- CancerEpiSys – Integrative analysis of epigenetic networks that determine the chronic lymphocytic leukemia disease state (2018) (0)
- Discovery of Tumor Reactive T Cell Receptors in Newly Diagnosed Multiple Myeloma (2022) (0)
- Tracing Reversible Light-Induced Chromatin Binding with Near-infrared Fluorescent Proteins. (2020) (0)
- Correlated Microscopy : From Dynamics to Structure (2008) (0)
- 469 Epigenomic characterization of non-melanoma skin cancer (2019) (0)
- Hematopoietic Stem Cells Fail to Regenerate In Vivo Following Inflammatory Stress (2016) (0)
- TRANSCRIPTIONAL AND GENOMIC INTRA‐TUMOR HETEROGENEITY DRIVES SUBCLONE SPECIFIC DRUG RESPONSES IN DIFFUSE LARGE B CELL LYMPHOMA (2019) (0)
- Binding affinity of the transcription factor fork head from Drosophila to various DNA (1994) (0)
- P-049: The spatial sub-clonal architecture in newly diagnosed myeloma patients revealed by whole genome and single-cell sequencing (2021) (0)
- TSA has a complex effect on cell cycle progression (2002) (0)
- Author Correction: The evolutionary history of 2,658 cancers (2023) (0)
- Recurrent Mutations in EGR2 Direct Specific Epigenetic Reconfiguration in Chronic Lymphocytic Leukemia (2018) (0)
- Epigenetic signals that direct cell type–specific interferon beta response in mouse cells (2022) (0)
- Integrative analysis of combinatorial chromatin interactions using high-throughput sequencing data (2016) (0)
- Quantification of telomere features in tumor tissue sections by an automated 3D imaging-based workflow (2016) (0)
- Additional File 1: Additional Documentation for Dynamic Properties of Independent Chromatin Domains Measured by Correlation Spectroscopy in Living Cells Content (2016) (0)
- A Comprehensive Analysis of Single-Cell Chromatin Accessibility and Gene Expression Identifies Intra-Tumor Heterogeneity and Molecular Treatment Responses in Relapsed/Refractory Multiple Myeloma (2019) (0)
- pheno-seq – linking 3D phenotypes of clonal tumor spheroids to gene expression (2018) (0)
- TelomereHunter – in silico estimation of telomere content and composition from cancer genomes (2019) (0)
- Dissecting intratumour heterogeneity of nodal B-cell lymphomas at the transcriptional, genetic and drug-response levels (2020) (0)
- 3037 – COMBINED SINGLE-CELL DNA METHYLOME AND TRANSCRIPTOME ANALYSIS IDENTIFIES MOLECULAR STATES OF EARLY LINEAGE COMMITMENT (2020) (0)
- Developing a software suite to analyze the interplay between nucleosome arrangement, DNA methylation and transcription factor binding (2013) (0)
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