Kazutaka Katoh
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Kazutaka Katohcomputer-science Degrees
Computer Science
#6116
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#6447
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Machine Learning
#1880
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#1905
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Artificial Intelligence
#2127
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#2163
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Database
#3229
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#3365
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Computer Science
Kazutaka Katoh's Degrees
- PhD Computer Science University of Tokyo
- Masters Computer Science University of Tokyo
- Bachelors Computer Science University of Tokyo
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(Suggest an Edit or Addition)Kazutaka Katoh's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability (2013) (25779)
- MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. (2002) (11455)
- MAFFT version 5: improvement in accuracy of multiple sequence alignment (2005) (4494)
- MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization (2017) (3735)
- Recent developments in the MAFFT multiple sequence alignment program (2008) (3269)
- Multiple alignment of DNA sequences with MAFFT. (2009) (1214)
- Parallelization of the MAFFT multiple sequence alignment program (2010) (729)
- Improvements in Performance and Usability (2013) (681)
- GUIDANCE2: accurate detection of unreliable alignment regions accounting for the uncertainty of multiple parameters (2015) (582)
- Improved accuracy of multiple ncRNA alignment by incorporating structural information into a MAFFT-based framework (2008) (548)
- Parallelization of MAFFT for large-scale multiple sequence alignments (2018) (512)
- aLeaves facilitates on-demand exploration of metazoan gene family trees on MAFFT sequence alignment server with enhanced interactivity (2013) (473)
- A simple method to control over-alignment in the MAFFT multiple sequence alignment program (2016) (370)
- MAFFT: iterative refinement and additional methods. (2014) (355)
- MAFFT-DASH: integrated protein sequence and structural alignment (2019) (339)
- Long-read sequencing identifies GGC repeat expansions in NOTCH2NLC associated with neuronal intranuclear inclusion disease (2019) (256)
- Application of the MAFFT sequence alignment program to large data—reexamination of the usefulness of chained guide trees (2016) (242)
- Adding unaligned sequences into an existing alignment using MAFFT and LAST (2012) (184)
- Improvement in the accuracy of multiple sequence alignment program MAFFT. (2005) (176)
- Sister group relationship of turtles to the bird-crocodilian clade revealed by nuclear DNA-coded proteins. (2005) (171)
- Monophyly of Lampreys and Hagfishes Supported by Nuclear DNA–Coded Genes (1999) (125)
- PartTree: an algorithm to build an approximate tree from a large number of unaligned sequences (2007) (120)
- Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes (2004) (107)
- Protein multiple sequence alignment. (2008) (80)
- Genetic Algorithm-Based Maximum-Likelihood Analysis for Molecular Phylogeny (2001) (76)
- Protein Tyrosine Kinase cDNAs from Amphioxus, Hagfish, and Lamprey: Isoform Duplications Around the Divergence of Cyclostomes and Gnathostomes (1999) (70)
- Molecular Evolution of Arthropod Color Vision Deduced from Multiple Opsin Genes of Jumping Spiders (2008) (62)
- Multiple receptor-like kinase cDNAs from liverwort Marchantia polymorpha and two charophycean green algae, Closterium ehrenbergii and Nitella axillaris: Extensive gene duplications and gene shufflings in the early evolution of streptophytes. (2007) (53)
- Sponge homologs of vertebrate protein tyrosine kinases and frequent domain shufflings in the early evolution of animals before the parazoan-eumetazoan split. (2001) (49)
- Repertoire Builder: high-throughput structural modeling of B and T cell receptors (2019) (47)
- ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone (2021) (41)
- MAO: a Multiple Alignment Ontology for nucleic acid and protein sequences (2005) (32)
- A heuristic approach of maximum likelihood method for inferring phylogenetic tree and an application to the mammalian SOX‐3 origin of the testis‐determining gene SRY (1999) (31)
- Long-read sequencing identifies the pathogenic nucleotide repeat expansion in RFC1 in a Japanese case of CANVAS (2020) (30)
- Protein Tyrosine Phosphatases from Amphioxus, Hagfish, and Ray: Divergence of Tissue-Specific Isoform Genes in the Early Evolution of Vertebrates (2000) (29)
- Comparative analyses of lysophosphatidic acid receptor-mediated signaling (2015) (28)
- Flexible, Functional, and Familiar: Characteristics of SARS-CoV-2 Spike Protein Evolution (2020) (25)
- A pipeline for complete characterization of complex germline rearrangements from long DNA reads (2020) (20)
- Structure of a mammalian TBP (TATA-binding protein) gene: isolation of the mouse TBP genome. (1993) (19)
- Long-read DNA sequencing fully characterized chromothripsis in a patient with Langer–Giedion syndrome and Cornelia de Lange syndrome-4 (2020) (18)
- An engineered ACE2 decoy neutralizes the SARS-CoV-2 Omicron variant and confers protection against infection in vivo (2022) (15)
- MinION barcodes: biodiversity discovery and identification by everyone, for everyone (2021) (14)
- lamassemble: Multiple Alignment and Consensus Sequence of Long Reads. (2021) (12)
- Structural Modeling of Lymphocyte Receptors and Their Antigens. (2019) (10)
- Engineered ACE2 counteracts vaccine-evading SARS-CoV-2 Omicron variant (2021) (9)
- Cyclostome Hemoglobins Are Possibly Paralogous to Gnathostome Hemoglobins (2002) (8)
- Deciphering the origin of Aspergillus flavus NRRL21882, the active biocontrol agent of Afla‐Guard® (2020) (7)
- Multiple Sequence Alignment: Methods and Protocols (2021) (5)
- Functional lysophosphatidic acid receptors expressed in Oryzias latipes. (2014) (4)
- A method for complete characterization of complex germline rearrangements from long DNA reads (2019) (3)
- A method for complete characterization of complex germline rearrangements from long DNA reads (2019) (3)
- Comparative analysis of Phytophthora genomes reveals oomycete pathogenesis in crops (2021) (3)
- Emerging SARS-CoV-2 variants follow a historical pattern recorded in outgroups infecting non-human hosts (2021) (2)
- The evolution of structural genomics (2022) (2)
- Chapter 19 – Modeling Biocatalysts (2017) (1)
- 1P267 Application of novel amino acid substitution matrix, MIQS, to the MAFFT multiple sequence aligner(22C. Bioinformatics:Comparative genomics,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014)) (2014) (1)
- Amino Acid Specificity of Ancestral Aminoacyl-tRNA Synthetase Prior to the Last Universal Common Ancestor Commonote commonote (2022) (1)
- Multiple Sequence Alignments: The Next Generation (2006) (1)
- Possible changes in fidelity of DNA polymerase δ in ancestral mammals (2020) (0)
- Corrigendum to “Comparative analysis of Phytophthora genomes reveals oomycete pathogenesis in crops” [Heliyon 7 (2) (February 2021) e06317] (2021) (0)
- ONTbarcoder and MinION barcodes aid biodiversity discovery and identification by everyone, for everyone (2021) (0)
- 25 Protein Multiple Sequence Alignment (2009) (0)
- Long-read DNA sequencing fully characterized chromothripsis in a patient with Langer–Giedion syndrome and Cornelia de Lange syndrome-4 (2020) (0)
- Molecular evolution of avian δ-crystallin genes (2016) (0)
- Method and device for winding up a seat belt (1985) (0)
- A simple method for predicting emerging SARS-CoV-2 variants using outgroups infecting non-human hosts (2021) (0)
- Analysis of Protein Intermolecular Interactions with MAFFT-DASH. (2021) (0)
- Long-read sequencing identifies GGC repeat expansions in NOTCH2NLC associated with neuronal intranuclear inclusion disease (2019) (0)
- Sequence analysis Parallelization of MAFFT for large-scale multiple sequence alignments (2018) (0)
- Amino Acid Specificity of Ancestral Aminoacyl-tRNA Synthetase Prior to the Last Universal Common Ancestor Commonote commonote (2022) (0)
- 2P073 Quantitative analysis of conservation of amino acid residues critical for protein-protein interaction(30. Protein function (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006) (2006) (0)
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