Keith A. Crandall
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American computational biologist, bioinformaticist and population geneticist
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Keith A. Crandallbiology Degrees
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#28
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#11
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#270
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Biology
Keith A. Crandall's Degrees
- PhD Biology University of Texas at Austin
- Masters Biology University of Texas at Austin
- Bachelors Biology Brigham Young University
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Why Is Keith A. Crandall Influential?
(Suggest an Edit or Addition)According to Wikipedia, Keith A. Crandall is an American computational biologist, bioinformaticist, and population geneticist at George Washington University, where he is the founding director of the Computational Biology Institute, and professor in the Department of Biostatistics and Bioinformatics.
Keith A. Crandall's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- MODELTEST: testing the model of DNA substitution (1998) (20303)
- TCS: a computer program to estimate gene genealogies (2000) (9210)
- A cladistic analysis of phenotypic associations with haplotypes inferred from restriction endonuclease mapping and DNA sequence data. III. Cladogram estimation. (1992) (3224)
- Evaluation of methods for detecting recombination from DNA sequences: Computer simulations (2001) (1391)
- Multiple and ancient origins of the domestic dog. (1997) (980)
- Many species in one: DNA barcoding overestimates the number of species when nuclear mitochondrial pseudogenes are coamplified (2008) (878)
- Empirical tests of some predictions from coalescent theory with applications to intraspecific phylogeny reconstruction. (1993) (868)
- A Classification of Living and Fossil Genera of Decapod Crustaceans (2009) (709)
- The causes and consequences of HIV evolution (2004) (583)
- The Impact of Species Concept on Biodiversity Studies (2004) (540)
- Synthesis of phylogeny and taxonomy into a comprehensive tree of life (2014) (523)
- Earth BioGenome Project: Sequencing life for the future of life (2018) (492)
- TCS: estimating gene genealogies (2002) (489)
- The Effect of Recombination on the Accuracy of Phylogeny Estimation (2002) (447)
- Phylogeny Estimation and Hypothesis Testing Using Maximum Likelihood (1997) (419)
- CRAYFISH MOLECULAR SYSTEMATICS: USING A COMBINATION OF PROCEDURES TO ESTIMATE PHYLOGENY (1996) (394)
- Beyond FST: Analysis of population genetic data for conservation (2004) (342)
- Mitochondrial DNA phylogeography and population history of the grey wolf Canis lupus (1999) (339)
- Recombination in evolutionary genomics. (2002) (310)
- TreeSAAP: Selection on Amino Acid Properties using phylogenetic trees (2003) (298)
- Global diversity of crayfish (Astacidae, Cambaridae, and Parastacidae––Decapoda) in freshwater (2007) (287)
- Intragenomic variation within ITS1 and ITS2 of freshwater crayfishes (Decapoda: Cambaridae): implications for phylogenetic and microsatellite studies. (2000) (280)
- Model-based multi-locus estimation of decapod phylogeny and divergence times. (2005) (247)
- Multiple interspecies transmissions of human and simian T-cell leukemia/lymphoma virus type I sequences. (1996) (237)
- Genome-wide analysis of SARS-CoV-2 virus strains circulating worldwide implicates heterogeneity (2020) (225)
- Multiple drivers of decline in the global status of freshwater crayfish (Decapoda: Astacidea) (2015) (205)
- Multiple drivers of decline in the global status of freshwater crayfish (Decapoda: Astacidea) (2015) (205)
- Targeted Amplicon Sequencing (TAS): A Scalable Next-Gen Approach to Multilocus, Multitaxa Phylogenetics (2011) (197)
- Testing Species Boundaries in Biodiversity Studies (1997) (193)
- Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls (2015) (189)
- Lost along the way: the significance of evolution in reverse (2003) (184)
- An updated classification of the freshwater crayfishes (Decapoda: Astacidea) of the world, with a complete species list (2017) (175)
- Pathogen typing in the genomics era: MLST and the future of molecular epidemiology. (2013) (173)
- Parallel evolution of drug resistance in HIV: failure of nonsynonymous/synonymous substitution rate ratio to detect selection. (1999) (173)
- Population genetics of microbial pathogens estimated from multilocus sequence typing (MLST) data. (2006) (169)
- PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples (2014) (169)
- Characterization of the Follicular Dendritic Cell Reservoir of Human Immunodeficiency Virus Type 1 (2008) (158)
- Decapod crustacean phylogenetics (2009) (136)
- The tempo and mode of barnacle evolution. (2008) (133)
- Mitochondrial DNA and Decapod Phylogenies: The Importance of 47 Pseudogenes and Primer Optimization (2009) (126)
- Intraspecific Cladogram Estimation: Accuracy at Higher Levels of Divergence (1994) (125)
- The Decapod Tree of Life: Compiling the Data and Moving toward a Consensus of Decapod Evolution (2009) (123)
- A Comparison of Phylogenetic Network Methods Using Computer Simulation (2008) (122)
- Unraveling the evolutionary radiation of the thoracican barnacles using molecular and morphological evidence: a comparison of several divergence time estimation approaches. (2004) (121)
- EVOLUTIONARY BIOLOGY IN BIODIVERSITY SCIENCE, CONSERVATION, AND POLICY: A CALL TO ACTION (2010) (120)
- The emergence of lobsters: phylogenetic relationships, morphological evolution and divergence time comparisons of an ancient group (decapoda: achelata, astacidea, glypheidea, polychelida). (2014) (120)
- Pathoscope: Species identification and strain attribution with unassembled sequencing data (2013) (120)
- Molecular systematics and biogeography of the southern South american freshwater "crabs" Aegla (decapoda: Anomura: Aeglidae) using multiple heuristic tree search approaches. (2004) (117)
- Subterranean phylogeography of freshwater crayfishes shows extensive gene flow and surprisingly large population sizes (2005) (117)
- Human immunodeficiency virus type 1 quasi species that rebound after discontinuation of highly active antiretroviral therapy are similar to the viral quasi species present before initiation of therapy. (2001) (117)
- The evolution of HIV (1999) (115)
- A comprehensive and integrative reconstruction of evolutionary history for Anomura (Crustacea: Decapoda) (2013) (112)
- The Cancer Microbiome: Distinguishing Direct and Indirect Effects Requires a Systemic View (2020) (111)
- Testing hypotheses of population structuring in the Northeast Atlantic Ocean and Mediterranean Sea using the common cuttlefish Sepia officinalis (2007) (111)
- Independent evolution of HIV type 1 in different brain regions. (1999) (109)
- PHYLOGENETIC RELATIONSHIPS AMONG THE AUSTRALIAN AND NEW ZEALAND GENERA OF FRESHWATER CRAYFISHES (DECAPODA:PARASTACIDAE) (1999) (106)
- LINEAR HABITATS AND THE NESTED CLADE ANALYSIS: AN EMPIRICAL EVALUATION OF GEOGRAPHIC VERSUS RIVER DISTANCES USING AN OZARK CRAYFISH (DECAPODA: CAMBARIDAE) (2003) (102)
- Beyond FST: Analysis of population genetic data for conservation (2003) (101)
- A Phylogenomic Framework, Evolutionary Timeline, and Genomic Resources for Comparative Studies of Decapod Crustaceans (2018) (100)
- Phylogeny of the Infraorder Caridea Based on Mitochondrial and Nuclear Genes (Crustacea: Decapoda) (2009) (98)
- Molecular taxonomy in the dark: evolutionary history, phylogeography, and diversity of cave crayfish in the subgenus Aviticambarus, genus Cambarus. (2007) (96)
- The evolution of HIV: Inferences using phylogenetics (2011) (95)
- Effective population sizes: missing measures and missing concepts (1999) (95)
- Baseline human gut microbiota profile in healthy people and standard reporting template (2018) (94)
- Cryptic species of Clavelina (Ascidiacea) in two different habitats: harbours and rocky littoral zones in the northwestern Mediterranean (2001) (93)
- Molecular characterization of crustacean visual pigments and the evolution of pancrustacean opsins. (2006) (92)
- Biogeographic regionalization of Australia: assigning conservation priorities based on endemic freshwater crayfish phylogenetics (2000) (90)
- Evolution of Afrotropical freshwater crab lineages obscured by morphological convergence. (2006) (90)
- Pleistocene glaciation leaves deep signature on the freshwater crab Aegla alacalufi in Chilean Patagonia (2009) (89)
- Dual Transcriptomic Profiling of Host and Microbiota during Health and Disease in Pediatric Asthma (2015) (84)
- SYSTEMATICS OF THE EUROPEAN ENDANGERED CRAYFISH SPECIES AUSTROPOTAMOBIUS PALLIPES (DECAPODA: ASTACIDAE) (2000) (84)
- Comparing Phylogenetic Codivergence between Polyomaviruses and Their Hosts (2006) (83)
- Interspecies physiological variation as a tool for cross-species assessments of global warming-induced endangerment: validation of an intrinsic determinant of macroecological and phylogeographic structure (2007) (81)
- Phylogenetic relationships between spiny, slipper and coral lobsters (Crustacea, Decapoda, Achelata). (2009) (81)
- Evaluating the performance of likelihood methods for detecting population structure and migration (2004) (81)
- Global diversity of crabs (Aeglidae: Anomura: Decapoda) in freshwater (2007) (80)
- Phylogeographic patterning in a freshwater crab species (Decapoda: Potamonautidae: Potamonautes) reveals the signature of historical climatic oscillations (2006) (77)
- Metagenomic deep sequencing reveals association of microbiome signature with functional biases in bovine mastitis (2019) (77)
- Gondwanan radiation of the Southern Hemisphere crayfishes (Decapoda: Parastacidae): evidence from fossils and molecules (2010) (76)
- Epitope-based chimeric peptide vaccine design against S, M and E proteins of SARS-CoV-2, the etiologic agent of COVID-19 pandemic: an in silico approach (2020) (76)
- Somatic mitochondrial DNA mutations in prostate cancer and normal appearing adjacent glands in comparison to age-matched prostate samples without malignant histology. (2006) (74)
- Metataxonomic and Metagenomic Approaches vs. Culture-Based Techniques for Clinical Pathology (2016) (73)
- Cocaine abuse and HIV-1 infection: Epidemiology and neuropathogenesis (1998) (71)
- Gut microbiome differences between wild and captive black rhinoceros – implications for rhino health (2019) (70)
- Kisspeptin/GPR54 System: What Do We Know About Its Role in Human Reproduction? (2018) (69)
- Incorporating gaps as phylogenetic characters across eight DNA regions: ramifications for North American Psoraleeae (Leguminosae). (2008) (67)
- Conservation phylogenetics of Chilean freshwater crabs Aegla (Anomura, Aeglidae): assigning priorities for aquatic habitat protection (2002) (66)
- Rhodopsin evolution in the dark (1997) (66)
- Nested clade analysis statistics (2006) (65)
- Telescope: Characterization of the retrotranscriptome by accurate estimation of transposable element expression (2018) (65)
- Sampling bias and incorrect rooting make phylogenetic network tracing of SARS-COV-2 infections unreliable (2020) (63)
- Life in extreme environments: microbial diversity in Great Salt Lake, Utah (2014) (63)
- Remarkable convergent evolution in specialized parasitic Thecostraca (Crustacea) (2009) (62)
- Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms (2014) (62)
- Phylogeny and biogeography of the freshwater crayfish Euastacus (Decapoda: Parastacidae) based on nuclear and mitochondrial DNA. (2005) (62)
- Associations between HIV infection and clinical spectrum of COVID-19: a population level analysis based on US National COVID Cohort Collaborative (N3C) data (2021) (60)
- Phylogenetic position, systematic status, and divergence time of the Procarididea (Crustacea: Decapoda) (2010) (59)
- Empirical tests for ecological exchangeability (2005) (59)
- Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data (2014) (59)
- Lost Branches on the Tree of Life (2013) (59)
- Phylogeny, extinction and conservation: embracing uncertainties in a time of urgency (2015) (58)
- Squamate relationships based on C-mos nuclear DNA sequences: increased taxon sampling improves bootstrap support (2001) (58)
- The Earth BioGenome Project 2020: Starting the clock (2022) (58)
- DNA EVIDENCE FOR NONHYBRID ORIGINS OF PARTHENOGENESIS IN NATURAL POPULATIONS OF VERTEBRATES (2009) (57)
- Gene flow estimates in Utah's cougars imply management beyond Utah (2001) (57)
- Environmental DNA survey captures patterns of fish and invertebrate diversity across a tropical seascape (2019) (57)
- Single-Molecule Long-Read 16S Sequencing To Characterize the Lung Microbiome from Mechanically Ventilated Patients with Suspected Pneumonia (2014) (56)
- Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities (2015) (55)
- Testing Species Boundaries in an Ancient Species Complex with Deep Phylogeographic History: Genus Xantusia (Squamata: Xantusiidae) (2004) (54)
- All the better to see you with: a review of odonate color vision with transcriptomic insight into the odonate eye (2012) (52)
- ON THE PHYLOGENETIC POSITIONING OF THE SOUTH AMERICAN FRESHWATER CRAYFISH GENERA (DECAPODA: PARASTACIDAE) (2000) (52)
- THE ZOOGEOGRAPHY AND CENTERS OF ORIGIN OF THE CRAYFISH SUBGENUS PROCERICAMBARUS (DECAPODA: CAMBARIDAE) (1999) (52)
- The evolution of foot-and-mouth disease virus: impacts of recombination and selection. (2008) (51)
- Nasopharyngeal Microbiome Diversity Changes over Time in Children with Asthma (2017) (50)
- Recombination favors the evolution of drug resistance in HIV-1 during antiretroviral therapy. (2007) (50)
- Multi‐locus DNA sequence data reveal a history of deep cryptic vicariance and habitat‐driven convergence in the desert night lizard Xantusia vigilis species complex (Squamata: Xantusiidae) (2007) (48)
- Intraspecific phylogenetics: support for dental transmission of human immunodeficiency virus (1995) (46)
- Living with the genetic signature of Miocene induced change: evidence from the phylogeographic structure of the endemic angulate tortoise Chersina angulata. (2007) (46)
- Conservation phylogenetics of Ozark crayfishes: Assigning priorities for aquatic habitat protection (1998) (44)
- Fish-T1K (Transcriptomes of 1,000 Fishes) Project: large-scale transcriptome data for fish evolution studies (2016) (44)
- The Molecular Evolution of Visual Pigments of Freshwater Crayfishes (Decapoda: Cambaridae) (1997) (44)
- Population genetics of Neisseria gonorrhoeae in a high-prevalence community using a hypervariable outer membrane porB and 13 slowly evolving housekeeping genes. (2005) (43)
- Machine learning approaches to predict lupus disease activity from gene expression data (2019) (43)
- Divergence and diversification in North American Psoraleeae (Fabaceae) due to climate change (2008) (43)
- REANALYSIS OF THE RELATIONSHIPS AMONG THE CIRRIPEDIA AND THE ASCOTHORACIDA AND THE PHYLOGENETIC POSITION OF THE FACETOTECTA (MAXILLOPODA: THECOSTRACA) USING 18S rDNA SEQUENCES (2002) (42)
- A synthetic phylogeny of freshwater crayfish: insights for conservation (2015) (41)
- The evolutionary diversity of barnacles, with an updated classification of fossil and living forms (2021) (41)
- PHYLOGENETIC POSITION OF THE FRESHWATER ANOMURAN FAMILY AEGLIDAE (2002) (41)
- PROPOSAL TO COMPLETE A PHYLOGENETIC TAXONOMY AND SYSTEMATIC REVISION FOR FRESHWATER CRAYFISH (ASTACIDEA) (2004) (41)
- Temporal trends in gonococcal population genetics in a high prevalence urban community. (2007) (41)
- Insights Into the Resistome of Bovine Clinical Mastitis Microbiome, a Key Factor in Disease Complication (2020) (41)
- Evolution of Morphology, Ontogeny and Life Cycles within the Crustacea Thecostraca (2009) (41)
- Recombination estimation under complex evolutionary models with the coalescent composite-likelihood method. (2006) (41)
- Molecular phylogeny, systematics and morphological evolution of the acorn barnacles (Thoracica: Sessilia: Balanomorpha). (2014) (40)
- The ecology and conservation status of Madagascar's endemic freshwater crayfish (Parastacidae; Astacoides). (2007) (40)
- Evolution underground: a molecular phylogenetic investigation of Australian burrowing freshwater crayfish (Decapoda: Parastacidae) with particular focus on Engaeus Erichson. (2009) (39)
- Pediatric asthma comprises different phenotypic clusters with unique nasal microbiotas (2018) (37)
- PHYLOGENETIC RELATIONSHIPS AMONG THE SPECIES OF AEGLA ( ANOMURA : AEGLIDAE ) FRESHWATER CRABS FROM CHILE (2002) (36)
- Population Genomics and Phylogeography of an Australian Dairy Factory Derived Lytic Bacteriophage (2012) (35)
- Phylogenetics links monster larva to deep-sea shrimp (2012) (35)
- Molecular Phylogeny of the Genus Cronius Stimpson, 1860, with Reassignment of C. tumidulus and Several American Species of Portunus to the Genus Achelous De Haan, 1833 (Brachyura: Portunidae) (2016) (35)
- Phylogenetic relationships and molecular adaptation dynamics of human rhinoviruses. (2009) (34)
- Avoidance of extinction through nonexistence: the use of museum specimens and molecular genetics to determine the taxonomic status of an endangered freshwater crayfish (2009) (34)
- Phylodynamics of HIV-1 from a Phase III AIDS Vaccine Trial in Bangkok, Thailand (2011) (34)
- Transcriptome patterns in hidradenitis suppurativa: support for the role of antimicrobial peptides and interferon pathways in disease pathogenesis (2019) (33)
- A new species of burrowing crayfish, Virilastacus rucapihuelensis (Crustacea: Decapoda: Parastacidae), from southern Chile (2005) (33)
- Phylogenetic relationships, character evolution, and taxonomic implications within the slipper lobsters (Crustacea: Decapoda: Scyllaridae). (2012) (32)
- Hiv-1 Neuropathogenesis and Abused Drugs (1996) (31)
- A CONSERVATION ASSESSMENT OF THE FRESHWATER CRABS OF SRI LANKA (2005) (30)
- PHYLOGENY OF THE THORACICAN BARNACLES BASED ON 18S rDNA SEQUENCES (2000) (30)
- The Timing of the Diversification of the Freshwater Crayfishes (2009) (30)
- Antibiotic multidrug resistance in the cystic fibrosis airway microbiome is associated with decreased diversity (2018) (30)
- Cryptic diversity in Engaeus Erichson, Geocharax Clark and Gramastacus Riek (Decapoda:Parastacidae) revealed by mitochondrial 16S rDNA sequences (2007) (29)
- Fecal Transplant in Children With Clostridioides difficile Gives Sustained Reduction in Antimicrobial Resistance and Potential Pathogen Burden (2019) (29)
- Molecular Genetic Re-Examination of Subfamilies and Polyphyly in the Family Pinnotheridae (Crustacea: Decapoda) (2016) (28)
- Ethnic differences in the adaptation rate of HIV gp120 from a vaccine trial (2009) (28)
- A NEW SPECIES OF BURROWING CRAYFISH VIRILASTACUS RETAMALI (DECAPODA: PARASTACIDAE) FROM THE SOUTHERN CHILE PEATLAND (2007) (28)
- Two sampling methods yield distinct microbial signatures in the nasopharynges of asthmatic children (2016) (28)
- Taxonomic subdivisions within the fossorial skink subfamily Acontinae (Squamata: Scincidae) reconsidered: a multilocus perspective (2006) (28)
- Conflicting Evolutionary Patterns Due to Mitochondrial Introgression and Multilocus Phylogeography of the Patagonian Freshwater Crab Aegla neuquensis (2012) (28)
- Molecular Phylogeny of the Family Callianassidae Based on Preliminary Analyses of Two Mitochondrial Genes (2016) (27)
- Testing Phylogenetic Hypotheses of the Subgenera of the Freshwater Crayfish Genus Cambarus (Decapoda: Cambaridae) (2012) (27)
- Microbiome dynamics and genomic determinants of bovine mastitis. (2020) (27)
- Dual infection with HIV-1 Thai subtype B and E (1995) (26)
- TAXONOMIC REVISION OF CAVE CRAYFISHES IN THE GENUS ORCONECTES, SUBGENUS ORCONECTES (DECAPODA: CAMBARIDAE) ALONG THE CUMBERLAND PLATEAU, INCLUDING A DESCRIPTION OF A NEW SPECIES, ORCONECTES BARRI (2008) (26)
- Mutated CEACAMs Disrupt Transforming Growth Factor beta Signaling and Alter the Intestinal Microbiome to Promote Colorectal Carcinogenesis. (2019) (25)
- Why sequence all eukaryotes? (2022) (25)
- Sea‐level changes and palaeo‐ranges: reconstruction of ancient shorelines and river drainages and the phylogeography of the Australian land crayfish Engaeus sericatus Clark (Decapoda: Parastacidae) (2008) (25)
- Unraveling evolutionary lineages in the limbless fossorial skink genus Acontias (Sauria: Scincidae): are subspecies equivalent systematic units? (2005) (25)
- Evaluation of haplotype callers for next-generation sequencing of viruses (2019) (25)
- Evolution of Picornaviridae: an examination of phylogenetic relationships and cophylogeny. (2010) (24)
- Population dynamics of Neisseria gonorrhoeae in Shanghai, China: a comparative study (2010) (24)
- Failed species, innominate forms, and the vain search for species limits: cryptic diversity in dusky salamanders (Desmognathus) of eastern Tennessee (2013) (24)
- Disease progression and evolution of the HIV-1 env gene in 24 infected infants. (2008) (24)
- Phylogenetic evidence from freshwater crayfishes that cave adaptation is not an evolutionary dead‐end (2017) (24)
- PHYLOGENETIC RELATIONSHIPS AMONG THE SPECIES OF AEGLA (ANOMURA: AEGLIDAE) FRESHWATER CRABS FROM CHILE (2002) (24)
- Genomic Databases and the Tree of Life (2004) (24)
- Diversity and genomic determinants of the microbiomes associated with COVID-19 and non-COVID respiratory diseases (2020) (23)
- Taxonomic Revision of Cave Crayfish in the Genus Cambarus, Subgenus Aviticambarus (Decapoda: Cambaridae) with Descriptions of Two New Species, C. speleocoopi and C. laconensis, Endemic to Alabama, U.S.A. (2009) (23)
- A new molecular phylogeny-based taxonomy of parasitic barnacles (Crustacea: Cirripedia: Rhizocephala) (2020) (23)
- Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes. (2014) (23)
- Phylogenomics and molecular evolution of polyomaviruses. (2006) (23)
- Drug Resistance Prediction Using Deep Learning Techniques on HIV-1 Sequence Data (2020) (22)
- New species and records of the genus Aegla Leach, 1820 (Crustacea, Anomura, Aeglidae) from the West-Central region of Rio Grande do Sul, Brazil (2013) (22)
- Three New Species of Aegla (Anomura) Freshwater Crabs from the Upper Uruguay River Hydrographic Basin in Brazil (2012) (22)
- Phylodynamics of HIV-1 from a Phase-III AIDS Vaccine Trial in North America (2009) (22)
- Description of a new species of Aeglidae, and new records of related species from river basins in Argentina (Crustacea, Anomura) (2010) (22)
- Phylogeny and Evolutionary Patterns in the Dwarf Crayfish Subfamily (Decapoda: Cambarellinae) (2012) (22)
- New Species and New Records of Endemic Freshwater Crabs from the Atlantic Forest in Southern Brazil (Anomura: Aeglidae) (2010) (22)
- Invasion by non-indigenous freshwater decapods of Malta and Sicily, central Mediterranean Sea (2018) (21)
- HTLV type I/II in British Columbia Amerindians: a seroprevalence study and sequence characterization of an HTLV type IIa isolate. (2000) (21)
- ON STABILISING THE NAMES OF THE INFRAORDERS OF THALASSINIDEAN SHRIMPS, AXIIDEA DE SAINT LAURENT, 1979 AND GEBIIDEA DE SAINT LAURENT, 1979 (DECAPODA) (2014) (21)
- Emerging semantics to link phenotype and environment (2015) (21)
- New methods for inferring population dynamics from microbial sequences. (2007) (21)
- Limited heterogeneity of HIV type 1 in infected mothers correlates with lack of vertical transmission. (2000) (21)
- Association of Early Aspirin Use With In-Hospital Mortality in Patients With Moderate COVID-19 (2022) (21)
- The Evolution of Gene Expression Underlying Vision Loss in Cave Animals (2018) (20)
- The Global Invertebrate Genomics Alliance (GIGA): developing community resources to study diverse invertebrate genomes. (2014) (19)
- Infraorder Astacidea Latreille, 1802 p.p.: the freshwater crayfish (2010) (19)
- Seminal Simian Immunodeficiency Virus in Chronically Infected Cynomolgus Macaques Is Dominated by Virus Originating from Multiple Genital Organs (2018) (19)
- The native South American crayfishes (Crustacea, Parastacidae): state of knowledge and conservation status (2015) (19)
- Directed next generation sequencing for phylogenetics: An example using Decapoda (Crustacea) (2011) (19)
- Microbial diversity within the airway microbiome in chronic pediatric lung diseases. (2017) (19)
- Deep phylogeny and character evolution in Thecostraca (Crustacea: Maxillopoda). (2012) (19)
- Distinguishing importation from diversification of quinolone-resistant Neisseria gonorrhoeae by molecular evolutionary analysis (2007) (18)
- Towards a barnacle tree of life: integrating diverse phylogenetic efforts into a comprehensive hypothesis of thecostracan evolution (2019) (18)
- Exon probe sets and bioinformatics pipelines for all levels of fish phylogenomics (2020) (18)
- Systematic pan-cancer analysis of somatic allele frequency (2018) (18)
- A Genomic Island in Salmonella enterica ssp. salamae Provides New Insights on the Genealogy of the Locus of Enterocyte Effacement (2012) (18)
- Characterization of HIV diversity, phylodynamics and drug resistance in Washington, DC (2017) (17)
- Climate oscillations, glacial refugia, and dispersal ability: factors influencing the genetic structure of the least salmonfly, Pteronarcella badia (Plecoptera), in Western North America (2015) (17)
- More evolution underground: Accelerated mitochondrial substitution rate in Australian burrowing freshwater crayfishes (Decapoda: Parastacidae). (2018) (16)
- Standards recommendations for the Earth BioGenome Project (2022) (16)
- Changes in microbiome diversity following beta-lactam antibiotic treatment are associated with therapeutic versus subtherapeutic antibiotic exposure in cystic fibrosis (2019) (16)
- SARS-CoV-2 infection reduces human nasopharyngeal commensal microbiome with inclusion of pathobionts (2021) (16)
- DNA Barcoding analysis of seafood accuracy in Washington, D.C. restaurants (2017) (16)
- HIV type 1 subtypes B and C from new regions of India and Indian and Ethiopian expatriates in Kuwait. (1996) (16)
- Deep Ancestral Introgression Shapes Evolutionary History of Dragonflies and Damselflies (2020) (16)
- COVID-19 Disease Severity among People with HIV Infection or Solid Organ Transplant in the United States: A Nationally-representative, Multicenter, Observational Cohort Study (2021) (16)
- Detecting a genetic bottleneck in Gilbert's Potoroo (Potorous gilbertii) (Marsupialia: Potoroidae), inferred from microsatellite and mitochondrial DNA sequence data (2002) (16)
- Unlocking capacities of genomics for the COVID-19 response and future pandemics (2022) (16)
- On the Origin of Decapoda (2009) (16)
- Ongoing Phenotypic and Genotypic Diversification in Adaptively Radiated Freshwater Crabs from Jamaica (2010) (15)
- A new species of burrowing crayfish, Virilastacus jarai (Crustacea, Decapoda, Parastacidae) from central-southern Chile (2012) (15)
- Phylogeny and Conservation: Molecular phylogenetics for conservation biology (2005) (15)
- Molecular phylogenetics of the burrowing crayfish genus Fallicambarus (Decapoda: Cambaridae) (2013) (15)
- Molecular phylodynamics and protein modeling of infectious salmon anemia virus (ISAV) (2011) (14)
- A field guide to freshwater fishes, crayfishes & mussels of South-Western Australia (2011) (14)
- Looks can be deceiving: species delimitation reveals hidden diversity in the freshwater crab Aegla longirostri (Decapoda: Anomura) (2018) (14)
- New records and description of a new species of Aeglidae ( Crustacea : Anomura ) from river basins in Southern Brazil (2010) (14)
- HIV-1 neuropathogenesis and abused drugs: current reviews, problems, and solutions. (1996) (14)
- A New Species Of Freshwater Anomuran Crab Of The Genus Aegla Leach, 1821 (Crustacea : Decapoda : Aeglidae) From The Nahuelbuta Coastal Range, Chile (2003) (14)
- Earthworms drastically change fungal and bacterial communities during vermicomposting of sewage sludge (2021) (14)
- Evaluation of computational methods for human microbiome analysis using simulated data (2020) (13)
- Three new species of Aeglidae ( Aegla Leach, 1820) from Paraná State, Brazil (2015) (13)
- Genetic diversity and molecular epidemiology of HIV transmission (2012) (13)
- Comparison of two commercial DNA extraction kits for the analysis of nasopharyngeal bacterial communities (2016) (13)
- Phylogeny of Marine Clawed Lobster Families Nephropidae Dana, 1852, and Thaumastochelidae Bate, 1888, Based on Mitochondrial Genes (2016) (12)
- HIV-1 infected monozygotic twins: a tale of two outcomes (2011) (12)
- Human Endogenous Retrovirus Expression Is Associated with Head and Neck Cancer and Differential Survival (2020) (12)
- Locus-Specific Characterization of Human Endogenous Retrovirus Expression in Prostate, Breast, and Colon Cancers (2021) (12)
- Biodiversity only makes sense in the light of evolution (2014) (12)
- Insights into origins of Human T-cell Lymphotropic Virus Type 1 based on new strains from aboriginal people of Canada. (2012) (12)
- Phototransduction Gene Expression and Evolution in Cave and Surface Crayfishes. (2018) (12)
- Evolutionary analyses of genetic recombination (2004) (12)
- Claw asymmetry in crabs: approaching an old issue from a new point of view (2019) (12)
- Longitudinal Associations of the Cystic Fibrosis Airway Microbiome and Volatile Metabolites: A Case Study (2020) (11)
- Airway microbial diversity is decreased in young children with cystic fibrosis compared to healthy controls but improved with CFTR modulation (2020) (11)
- Can taxonomic richness be used as a surrogate for phylogenetic distinctness indices for ranking areas for conservation (2003) (11)
- Consumption of Diet Soda Sweetened with Sucralose and Acesulfame-Potassium Alters Inflammatory Transcriptome Pathways in Females with Overweight and Obesity. (2020) (11)
- Multilocus Sequence Typing of Pathogens (2011) (11)
- PCR detection of host and HIV-1 sequences from archival brain tissue. (2000) (11)
- APPLICATIONS OF PHYLOGENETICS TO ISSUES IN FRESHWATER CRAYFISH BIOLOGY (2006) (11)
- Molecular phylogeny and character evolution of the chthamaloid barnacles (Cirripedia: Thoracica). (2012) (10)
- The relationship of the Australian freshwater crayfish genera Euastacus and Astacopsis (1998) (10)
- Transcriptomic analysis of human endogenous retroviruses in systemic lupus erythematosus (2019) (10)
- On the phylogenetic placement of human T cell leukemia virus type 1 sequences associated with an Andean mummy. (2006) (10)
- ReQTL: identifying correlations between expressed SNVs and gene expression using RNA-sequencing data (2019) (10)
- Assessing the conservation status of the land snail Oreohelix peripherica wasatchensis (Family Oreohelicidae) (2008) (10)
- Methods for Analyzing Viral Evolution (2008) (10)
- Inflammation in children with cystic fibrosis: contribution of bacterial production of long-chain fatty acids (2021) (10)
- Longitudinal population analysis of dual infection with recombination in two strains of HIV type 1 subtype B in an individual from a Phase 3 HIV vaccine efficacy trial. (2006) (10)
- Similarity searching using BLAST. (2009) (9)
- Evolving Infection Paradox of SARS-CoV-2: Fitness Costs Virulence? (2020) (9)
- Collecting and processing freshwater crayfishes (2016) (9)
- A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing (2020) (9)
- Aegla chilota, new species of anomuran freshwater crab from Chiloé Island, western Patagonia (2018) (8)
- A 28-Year History of HIV-1 Drug Resistance and Transmission in Washington, DC (2019) (8)
- Characteristics and Prediction of RNA Structure (2014) (8)
- Dominant clade‐featured SARS‐CoV‐2 co‐occurring mutations reveal plausible epistasis: An in silico based hypothetical model (2021) (8)
- The role of molecular taxonomy in uncovering variation within crayfish and the implications for conservation (2013) (8)
- De novo transcriptome assembly of Pueraria montana var. lobata and Neustanthus phaseoloides for the development of eSSR and SNP markers: narrowing the US origin(s) of the invasive kudzu (2018) (8)
- Molecular diversity of river versus lake freshwater anomurans in southernChile (Decapoda: Aeglidae) and morphometric differentiation between speciesand sexes (2011) (7)
- Life in extreme environments: microbial diversity in Great Salt Lake, Utah (2014) (7)
- Benchmark Evaluation of True Single Molecular Sequencing to Determine Cystic Fibrosis Airway Microbiome Diversity (2018) (7)
- Expression of Human Endogenous Retroviruses in Systemic Lupus Erythematosus: Multiomic Integration With Gene Expression (2021) (7)
- Isolation and characterization of di- and tetranucleotide microsatellite loci in the yellow-spotted night lizard Lepidophyma flavimaculatum (Squamata: Xantusiidae) (2006) (7)
- Molecular Population Genetics: Coalescent Methods Based on Summary Statistics (2002) (7)
- A Preliminary Phylogenetic Analysis of the Dendrobranchiata Based on Morphological Characters (2016) (6)
- Shallow phylogeographic structure of Puerto Rico freshwater crabs: an evolutionary explanation for low species diversity compared to Jamaica (2011) (6)
- Phylogeography reveals unexpectedly low genetic diversity in a widely distributed species: The case of the freshwater crab Aegla platensis (Decapoda: Anomura) (2018) (6)
- Metabolite, protein, and tissue dysfunction associated with COVID-19 disease severity (2021) (6)
- Global Diversity and Conservation of Freshwater Crayfish (Crustacea: Decapoda: Astacoidea) (2016) (6)
- Epidemiological and Evolutionary Dynamics of Pathogens (2008) (6)
- Felsenstein Phylogenetic Likelihood (2021) (6)
- Concordance and discordance of sequence survey methods for molecular epidemiology (2015) (6)
- HAPHPIPE: Haplotype Reconstruction and Phylodynamics for Deep Sequencing of Intrahost Viral Populations (2020) (6)
- Phylogenetics Applied to Genotype/Phenotype Association and Selection Analyses with Sequence Data from Angptl4 in Humans (2010) (6)
- Induction of mastitis by cow-to-mouse fecal and milk microbiota transplantation causes microbiome dysbiosis and genomic functional perturbation in mice (2022) (6)
- Jumpstarting phylogenetic analysis (2006) (5)
- Population structure and paternity in an American black bear ( Ursus americanus ) population using microsatellite DNA (2003) (5)
- Novel tetrameric tip motifs (APGK and VPGK) in the V3 loop of HIV type 1 envelope sequences in blood and brain from two injection drug users in Miami, Florida. (1997) (5)
- Phylogenetics of HIV (2002) (5)
- Phylogenetic Inference Using Molecular Data (2009) (5)
- Identifying Links Between Genotype and Phenotype Using Marker Loci and Candidate Genes (1996) (5)
- Importance of beta-lactam pharmacokinetics and pharmacodynamics on the recovery of microbial diversity in the airway of persons with cystic fibrosis (2021) (5)
- The status of the critically endangered freshwater crayfi sh Engaewa pseudoreducta (Crustacea: Parastacidae) in south-western Australia (2012) (5)
- Different processes lead to similar patterns: a test of codivergence and the role of sea level and climate changes in shaping a southern temperate freshwater assemblage (2011) (5)
- Omics community detection using multi-resolution clustering (2021) (4)
- Comparing phylogeographic patterns across the Patagonian Andes in twofreshwater crabs of the genus Aegla (Decapoda: Aeglidae) 291 (2011) (4)
- Genome Wide Analysis of Severe Acute Respiratory Syndrome Coronavirus-2 Implicates World-Wide Circulatory Virus Strains Heterogeneity (2020) (4)
- Expanding the toolbox for phylogeographic analysis (2009) (4)
- Each patient is a research biorepository: informatics-enabled research on surplus clinical specimens via the living BioBank (2020) (4)
- Population structure of two crayfish with diverse physiological requirements (2011) (4)
- COVID-19 biomarkers and their overlap with comorbidities in a disease biomarker data model (2021) (4)
- Phylogenetic Analysis of Large Sequence Data Sets (2005) (4)
- Variants in the Kisspeptin-GnRH Pathway Modulate the Hormonal Profile and Reproductive Outcomes. (2020) (3)
- Freshwater Prawns (Palaemonidae: Macrobrachium) with Abbreviated Larval Development in Rivers of Mexico: Uses, Management, and Conservation Opportunities (2016) (3)
- Evolution. Genomic databases and the tree of life. (2004) (3)
- Man and His Dog - Reply (1997) (3)
- The systematics of the reducta complex of the burrowing freshwater crayfish Engaewa Riek (2005) (3)
- Algorithms in Bioinformatics, 8th International Workshop, WABI 2008, Karlsruhe, Germany, September 15-19, 2008. Proceedings (2008) (3)
- Epidemiological associations with genomic variation in SARS-CoV-2 (2021) (3)
- Impact of Anaerobic Antibacterial Spectrum on Cystic Fibrosis Airway Microbiome Diversity and Pulmonary Function (2021) (3)
- Association of milk microbiome in bovine clinical mastitis and their functional implications in cows in Bangladesh (2019) (3)
- Testing the “Grandma Hypothesis”: Characterizing Skin Microbiome Diversity as a Project-Based Learning Approach to Genomics † (2020) (3)
- Proceedings of the 8th international workshop on Algorithms in Bioinformatics (2008) (3)
- Phylogenetic search through partial tree mixing (2012) (3)
- Status, distribution, and genetics of Blair's fencing crayfish, Faxonella blairi (Decapoda: Cambaridae) (2014) (3)
- Overexpressed somatic alleles are enriched in functional elements in Breast Cancer (2017) (3)
- Mus musculus populations in Western Australia lack VKORC1 mutations conferring resistance to first generation anticoagulant rodenticides: Implications for conservation and biosecurity (2020) (3)
- Resistome diversity in bovine clinical mastitis microbiome, a signature concurrence (2019) (3)
- Nested clade phylogeographic analysis for conservation genetics (2001) (2)
- Major revisions in pancrustacean phylogeny with recommendations for resolving challenging nodes (2022) (2)
- Evolutionary History and Phylogenetic Relationships of Aeglidae (2019) (2)
- Chromosome-level genome assembly, annotation, and phylogenomics of the gooseneck barnacle Pollicipes pollicipes (2022) (2)
- Mechanically Ventilated Patients with Suspected Pneumonia (2014) (2)
- An Annotated Checklist of the Crayfishes (Decapoda: Cambaridae) of Arkansas (2017) (2)
- All the better to see you with: a review of odonate color vision with transcriptomic insight into the odonate eye (2012) (2)
- A comprehensive and integrative reconstruction of evolutionary history for Anomura (Crustacea: Decapoda) (2013) (2)
- Source and acquisition of rhizosphere microbes in Antarctic vascular plants (2022) (2)
- Impact of Fecal Microbiota Transplantation on Gut Bacterial Bile Acid Metabolism in Humans (2022) (2)
- Human Immunodeficiency Viruses (HIV) (2001) (2)
- Corrigendum: A 28-Year History of HIV-1 Drug Resistance and Transmission in Washington, DC (2019) (2)
- Genome Polymorphism Detection Through Relaxed de Bruijn Graph Construction (2017) (2)
- Molecular diversity of two freshwater anomuran crab species in Southern Chile (Decapoda: Anomura: Aeglidae) compared to associated morphometric differences (2010) (2)
- Validation of Variant Assembly Using HAPHPIPE with Next-Generation Sequence Data from Viruses (2020) (2)
- Phylogenetic Approaches to Molecular Epidemiology (2002) (2)
- Hemiptera phylogenomic resources: Tree‐based orthology prediction and conserved exon identification (2020) (2)
- The Search for the Seed of Lehi: How Defining Alternative Models Helps in the Interpretation of Genetic Data (2003) (2)
- Research Infrastructures offer capacity to address scientific questions never attempted before: Are all taxa equal? (2018) (2)
- A synthesis tree of the Copepoda: integrating phylogenetic and taxonomic data reveals multiple origins of parasitism (2021) (2)
- Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data (2022) (2)
- Publication in the Journal of Crustacean Biology (2008) (1)
- The HIV Latency Reversal Agent HODHBt Enhances NK Cell Effector and Memory-Like Functions by Increasing Interleukin-15-Mediated STAT Activation (2022) (1)
- Using phylogenetically-informed annotation (PIA) to search for light-interacting genes in transcriptomes from non-model organisms (2014) (1)
- A New Morphotype of the Crayfish Cambarus hubrichti (Decapoda: Cambaridae) from a Karst Spring Cave System, with Comments on Its Ecology (2021) (1)
- Samples Needed to Complete Phylogenetic Analysis of Achelate Lobsters (2009) (1)
- Characteristics of equipartition for RNA structure (2014) (1)
- Oceania: The Freshwater Crayfish of the Oceania Region (2016) (1)
- Two sampling methods yield distinct microbial signatures in the nasopharynges of asthmatic children (2016) (1)
- A Proposal for a New Classification of Portunoidea and Cancroidea (Brachyura: Heterotremata) Based on Two Independent Molecular Phylogenies (2016) (1)
- ReQTL – an allele-level measure of variation-expression genomic relationships (2018) (1)
- Algorithms in Bioinformatics (2009) (1)
- Integrated Fertilization with Bagasse Vermicompost Changes the Microbiome of Mencía Must and Wine (2022) (1)
- ADVANCES IN OUR KNOWLEDGE OF THE ANOMURA (2009) (1)
- Comparative Analysis of Metagenomics and Metataxonomics for the Characterization of Vermicompost Microbiomes (2022) (1)
- Unlocking capacities of viral genomics for the COVID-19 pandemic response (2021) (1)
- Whole Genome Phylogenetic Tree Reconstruction Using Colored de Bruijn Graphs (2017) (1)
- Calculating expected DNA remnants from ancient founding events in human population genetics (2008) (1)
- Phylogenetic Estimate of the Freshwater Crayfish (Decapoda: Astacidea) using Morphology and Molecules (2015) (1)
- Distributional patterns of the South American species of Parastacidae (Decapoda, Astacidea) (2022) (1)
- Bacterial Functional Profiling of the Cystic Fibrosis Airway Across Clinical States (2020) (1)
- The Habitat Types of Freshwater Prawns (Palaemonidae: Macrobrachium) with Abbreviated Larval Development in Mesoamerica (Mexico, Guatemala and Belize) (2019) (1)
- Composition, Structure and Diversity of Soil Bacterial Communities before, during and after Transit through the Gut of the Earthworm Aporrectodea caliginosa (2022) (1)
- unassembled sequencing data : Species identification and strain attribution with Pathoscope Material Supplemental (2013) (1)
- Crayfish in the decapod lineage, their natural distribution and their threatened status (2011) (1)
- The Polychelidan Lobsters: Phylogeny and Systematics (Polychelida: Polychelidae) (2016) (1)
- The genus Creaserinus Hobbs, 1973 (Decapoda: Cambaridae) in Texas. (2021) (1)
- Towards a barnacle tree of life (2019) (1)
- Transcriptomic effects of dispersed oil in a non-model decapod crustacean (2017) (1)
- Schizophrenia risk from locus-specific human endogenous retroviruses (2019) (1)
- Making Change Sustainable: Network for Integrating Bioinformatics into Life Sciences Education (NIBLSE) Meeting Review (2022) (1)
- Metabolomic profiling of crayfish haemolymph distinguishes sister species and sex: implications for conservation, aquaculture and physiological studies (2020) (1)
- Using metabolic potential within the airway microbiome as predictors of clinical state in persons with cystic fibrosis (2023) (1)
- Freshwater Crustaceans Decadpos: An Important Resource of Guatemala (2018) (1)
- Entangled Aeglidae (Decapoda, Anomura): Additional evidence for cryptic species (2021) (1)
- RNA-Seq Reveals Genetic Differences in African American and European American Prostate Cancer (2016) (0)
- Young Children with Cystic Fibrosis Have Decreased Airway Microbial Diversity Compared to Healthy Controls of Similar Age (2019) (0)
- Systematics and biogeography of the Australian burrowing freshwater crayfish genus Engaewa Riekk (Decapoda: Parastacidae) (2014) (0)
- Convergent adaptation of true crabs (Decapoda: Brachyura) to a gradient of terrestrial environments (2023) (0)
- Changes in microbiome diversity following beta-lactam antibiotic treatment are associated with therapeutic versus subtherapeutic antibiotic exposure in cystic fibrosis (2019) (0)
- Author Correction: A cross-sectional study to characterize local HIV-1 dynamics in Washington, DC using next-generation sequencing (2020) (0)
- Characterization of ERV9 Elements within the Human Genome (2018) (0)
- $70.00 (cloth), $24.95 (paper), 239 ppPaul H. Harvey and Mark D. Pagel, The Comparative Method in Evolutionary Biology, Oxford University Press, Cambridge, U.K. (1991). (1993) (0)
- Maximum likelihood ancestral state reconstruction is implemented in PAML and PAUP (2000) (0)
- Abstract 2910: A TGF-β-ALDH2 axis controls liver- brain-gut microbiome driven obesity, metabolic syndrome and cancer (2021) (0)
- OVERVIEWS OF DECAPOD PHYLOGENY (2009) (0)
- Phylogeny and Biogeography of Asian Freshwater Crabs of the Family Gecarcinucidae (Brachyura: Potamoidea) (2016) (0)
- The origin, epidemiology and phylodynamics of HIV-1 CRF47_BF Study of New HIV Diagnoses (2022) (0)
- Insights into HIV-1 Transmission Dynamics Using Routinely Collected Data in the Mid-Atlantic United States (2022) (0)
- Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data (2014) (0)
- Climate oscillations, glacial refugia, and dispersal ability: factors influencing the genetic structure of the least salmonfly, Pteronarcella badia (Plecoptera), in Western North America (2015) (0)
- human-associated microbiomes at an unprecedented scale. Together with a significant reduction in cost of sequencing technologies and development of advanced gene-editing tools, the potential of leveraging human-associated microbiome data for development of novel diagnostic and therapeutic tools (0)
- ADVANCES IN OUR KNOWLEDGE OF THE THALASSINIDEAN AND LOBSTER-LIKE GROUPS (2009) (0)
- Intrahost evolutionary dynamics of SIV in cynomolgus macaques (2015) (0)
- Systematic pan-cancer analysis of somatic allele frequency (2018) (0)
- De novo transcriptome assembly of 3 Pueraria montana var . lobata and 4 Neustanthus phaseoloides for the 5 development of eSSR and SNP markers : 6 narrowing the US origin ( s ) of the invasive 7 kudzu (2018) (0)
- Partial Tree Mixing – a Novel Approach to Phylogenetic Search (2011) (0)
- Author Correction: Genome-wide analysis of SARS-CoV-2 virus strains circulating worldwide implicates heterogeneity (2021) (0)
- Impact of Antibiotics on the Lung Microbiome and Lung Function in Children With Cystic Fibrosis 1 Year After Hospitalization for an Initial Pulmonary Exacerbation (2022) (0)
- ADVANCES IN OUR KNOWLEDGE OF SHRIMP-LIKE DECAPODS (2009) (0)
- 27 - Longitudinal Sustained Microbiome Changes with Fecal Microbiota Transplantation in Children with Recurrent Clostridium Difficile Infection Revealed by Shotgun Metagenomic Sequencing (2018) (0)
- ADVANCES IN OUR KNOWLEDGE OF THE BRACHYURA (2009) (0)
- COVID-19 Biomarkers in research: Extension of the OncoMX cancer biomarker data model to capture biomarker data from other diseases. (2020) (0)
- Molecular Ecology is pleased to express its gratitude to all those who have reviewed manuscripts in the last two years (ending 15 November 2003), and for providing their services voluntarily. (2004) (0)
- PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples (2014) (0)
- Effects of three-times daily diet soda consumption for one week on the composition of the gut microbiome in healthy young adults (2016) (0)
- Microbiome Dynamics of Bovine Mastitis Progression and Genomic Determinants (2020) (0)
- (DECAPODA: PARASTACIDAE) FROM THE SOUTHERN CHILE PEATLAND (2007) (0)
- Molecular of Visual Pigments and the Evolution of Pancrustacean Opsins (2006) (0)
- 594: ALDH2-/-SPTBN1+/- MICE DEVELOP A PRO-INFLAMMATORY GUT MICROBIOME, LEAKY GUT, METABOLIC SYNDROME, AND NASH (2022) (0)
- Phylogeography of Cambarus tenebrosus: a Facultative Cave-Dwelling Freshwater Crayfish Species. (2005) (0)
- Characterizing the Gut Microbiota in Healthy Young Adults (2016) (0)
- Felsenstein Phylogenetic Likelihood (2021) (0)
- Host taxonomy determines the composition, structure, and diversity of the earthworm cast microbiome under homogenous feeding conditions. (2022) (0)
- CRUSTACEAN ISSUES ] 3 II % . m Decapod Crustacean Phylogenetics (2009) (0)
- freshwater crab species (Decapoda: Potamonautidae: Potamonautes) reveals the signature of historical climatic (2006) (0)
- Single locus resolution of transposable element expression using RNA-seq (2017) (0)
- Bioinformatic techniques for sequence analysis (2002) (0)
- Unlocking capacities of viral genomics for the COVID-19 pandemic response (2021) (0)
- Faculty Opinions recommendation of SeqArray-a storage-efficient high-performance data format for WGS variant calls. (2017) (0)
- Detecting Sex-Related Changes to the Metabolome of a Critically Endangered Freshwater Crayfish During the Mating Season (2021) (0)
- Therapeutic beta-lactam dosages and broad-spectrum antibiotics are associated with reductions in microbial richness and diversity in persons with cystic fibrosis (2023) (0)
- De novo transcriptome assembly of Pueraria montana var. lobata and Neustanthus phaseoloides for the development of eSSR and SNP markers: narrowing the US origin(s) of the invasive kudzu (2018) (0)
- Faculty Opinions recommendation of Genvisr: genomic visualizations in R. (2016) (0)
- Microbiome differences in wild and captive black rhinoceros 1 Gut microbiome differences between wild and captive black rhinoceros – 1 implications for rhino health 2 3 (2019) (0)
- 2573. Impact of Anaerobic Antibacterial Spectrum on Cystic Fibrosis Lung Microbiome Diversity and Pulmonary Function (2019) (0)
- Su579 ALDH2 DEFICIENCY TOGETHER WITH DISRUPTION OF TGF-β SIGNALING DRIVES OBESITY AND METABOLIC SYNDROME THROUGH A LIVER- BRAIN-GUT MICROBIOME AXIS (2021) (0)
- Amino Acid Substitutions and Spectral Tuning in an Invertebrate Visual Pigment (2006) (0)
- SPECIATION IN PATAGONIA: ESTABLISHING SUSTAINABLE INTERNATIONAL COLLABORATIONS IN EVOLUTION, ECOLOGY, AND CONSERVATION BIOLOGY (2005) (0)
- Metagenomics for clinical diagnostics: technologies and informatics. (2019) (0)
- Information on colonization of insular freshwaters is beginning to document the importance of speciation and extinction as critical ecological and evolutionary processes. Understanding how different freshwater species assemble and evolve on islands of different ages, locations, and types is relevant (2009) (0)
- Faculty Opinions recommendation of phydms: software for phylogenetic analyses informed by deep mutational scanning. (2017) (0)
- POPULATION STRUCTURE AND PATERNITY IN (2003) (0)
- Grapevine treatment with bagasse vermicompost changes the microbiome of Albariño must and wine and improves wine quality (2022) (0)
- Pediatric asthma comprises different phenotypic clusters with unique nasal microbiotas (2018) (0)
- Annotated transcriptome and associated datasets of flatback mud crabs (Eurypanopeus depressus) exposed to dispersed oil (2017) (0)
- Correction: A Genomic Island in Salmonella enterica ssp. salamae Provides New Insights on the Genealogy of the Locus of Enterocyte Effacement (2012) (0)
- Transcriptomic effects of dispers ed oil in a non-model decapod 1 crustacean 2 3 (2017) (0)
- Associations between Body Mass Index and Semen Parameters among men from the Washington D.C. Metropolitan Area (2016) (0)
- The HIV latency reversal agent HODHBt enhances NK Cell effector and memory-like functions by increasing IL-15 mediated-STAT activation (2021) (0)
- J. Avise., Molecular Markers, Natural History and Evolution (1995) (0)
- Gut microbiome differences between wild and captive black rhinoceros – implications for rhino health (2019) (0)
- Characterization of the Interstitial Cystitis/Bladder Pain Syndrome Microbiome in Clinically Diagnosed Patients (2022) (0)
- Hemisphere crayfishes (Decapoda: Parastacidae): evidence from fossils and (2010) (0)
- Unlocking the diagnostic and therapeutic potential of metagenomics (2019) (0)
- Book reviews (1993) (0)
- The Molecular Evolution of Invertebrate Opsins (2006) (0)
- Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities (2015) (0)
- Impact of Antibiotics on the Lung Microbiome and Lung Function in Cystic Fibrosis Patients 1 Year After Hospitalization for an Initial Exacerbation (2021) (0)
- Tu1929 ANTIMICROBIAL RESISTANCE GENE BURDEN DECREASES OVER TIME IN PRETERM INFANTS RECEIVING BREAST MILK (2020) (0)
- The Origin, Epidemiology, and Phylodynamics of Human Immunodeficiency Virus Type 1 CRF47_BF (2022) (0)
- Proceedings of Phylogeny Workshop the Perils of Ignoring Rate Heterogeneity: Inconsistency of Topology Estimation Methods When Substitution Rates Vary across Characters Estimation of Parameters of Evolutionary Models, with Applications in the Analysis of Large Data Sets a Biologically Meaningful Mod (2007) (0)
- Machine learning approaches to predict lupus disease activity from gene expression data (2019) (0)
- A New Species Of Freshwater Anomuran Crab Of The Genus Aegla Leachc 1821 lCrustacea c Decapoda c Aeglidaer From The Nahuelbuta Coastal Rangec Chile (2003) (0)
- Viral and host determinants of neurovirulence of HIV-1 infection. (1998) (0)
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