Kenta Nakai

Q: What Schools Are Affiliated With Kenta Nakai

Kenta Nakai is affiliated with the following schools: Hokkaido University, University of Tokyo, Osaka University, Kyoto University

Kenta Nakai's AcademicInfluence.com Rankings

Kenta Nakai

Computer Science

#7714

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#8119

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Informatics

#45

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#47

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Algorithms

#299

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#303

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Machine Learning

#2947

World Rank

#2984

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computer-science Degrees

Kenta Nakai

Biology

#11015

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#14388

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Bioinformatics

#127

World Rank

#129

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Computational Biology

#229

World Rank

#230

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biology Degrees

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Computer Science
Biology

Kenta Nakai's Degrees

PhD Bioinformatics University of Tokyo
Masters Computer Science Kyoto University
Bachelors Computer Science Kyoto University

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Kenta Nakai's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

WoLF PSORT: protein localization predictor (2007) (2779)
A knowledge base for predicting protein localization sites in eukaryotic cells (1992) (1574)
The Jmjd3-Irf4 axis regulates M2 macrophage polarization and host responses against helminth infection (2010) (1020)
Complete sequencing and characterization of 21,243 full-length human cDNAs (2004) (879)
Expert system for predicting protein localization sites in gram‐negative bacteria (1991) (781)
PrognoScan: a new database for meta-analysis of the prognostic value of genes (2009) (724)
Extensive feature detection of N-terminal protein sorting signals (2002) (717)
T cell receptor stimulation-induced epigenetic changes and Foxp3 expression are independent and complementary events required for Treg cell development. (2012) (612)
Better Prediction of Protein Cellular Localization Sites with the it k Nearest Neighbors Classifier (1997) (512)
Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (2005) (491)
PSORT-B: improving protein subcellular localization prediction for Gram-negative bacteria (2003) (424)
ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis (2006) (386)
DBTBS: a database of transcriptional regulation in Bacillus subtilis containing upstream intergenic conservation information (2007) (377)
Assessment of prediction accuracy of protein function from protein–protein interaction data (2001) (359)
A Probabilistic Classification System for Predicting the Cellular Localization Sites of Proteins (1996) (348)
Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones (2004) (346)
Protein sorting signals and prediction of subcellular localization. (2000) (322)
Construction of a novel database containing aberrant splicing mutations of mammalian genes. (1994) (313)
DBTSS: DataBase of human Transcriptional Start Sites and full-length cDNAs (2002) (239)
Cluster analysis of amino acid indices for prediction of protein structure and function. (1988) (220)
DBTSS: database of transcription start sites, progress report 2008 (2007) (212)
Protein Subcellular Localisation Prediction with WoLF PSORT (2005) (209)
Prediction of Transcriptional Terminators in Bacillus subtilis and Related Species (2005) (187)
BTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics (2004) (178)
An alternative-exon database and its statistical analysis. (2000) (174)
Genome-wide characterization of transcriptional start sites in humans by integrative transcriptome analysis. (2011) (122)
Massive transcriptional start site analysis of human genes in hypoxia cells (2009) (115)
Comprehensive detection of human terminal oligo-pyrimidine (TOP) genes and analysis of their characteristics (2008) (112)
HitPredict: a database of quality assessed protein–protein interactions in nine species (2010) (111)
Genome-wide analysis reveals strong correlation between CpG islands with nearby transcription start sites of genes and their tissue specificity. (2005) (102)
Prediction of subcellular locations of proteins: Where to proceed? (2010) (96)
Inferring the choreography of parental genomes during fertilization from ultralarge-scale whole-transcriptome analysis (2013) (91)
Global gene expression of the inner cell mass and trophectoderm of the bovine blastocyst (2012) (89)
DBTSS: DataBase of Human Transcription Start Sites, progress report 2006 (2005) (89)
DBTBS: a database of Bacillus subtilis promoters and transcription factors (2001) (88)
HitPredict version 4: comprehensive reliability scoring of physical protein–protein interactions from more than 100 species (2015) (86)
Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content (2009) (86)
BTSS, DataBase of Transcriptional Start Sites: progress report 2004 (2004) (81)
Modeling and predicting transcriptional units of Escherichia coli genes using hidden Markov models. (1999) (79)
DBTSS: DataBase of Transcriptional Start Sites progress report in 2012 (2011) (77)
ANISEED 2017: extending the integrated ascidian database to the exploration and evolutionary comparison of genome-scale datasets (2017) (75)
PROTEIN SUBCELLULAR LOCALIZATION PREDICTION (2004) (73)
Sequence comparison of human and mouse genes reveals a homologous block structure in the promoter regions. (2004) (69)
The H-Invitational Database (H-InvDB), a comprehensive annotation resource for human genes and transcripts* (2007) (66)
DBTMEE: a database of transcriptome in mouse early embryos (2014) (63)
Organism-Level Analysis of Vaccination Reveals Networks of Protection across Tissues (2017) (63)
Genomic cis-regulatory networks in the early Ciona intestinalis embryo (2010) (61)
Differential landscape of non-CpG methylation in embryonic stem cells and neurons caused by DNMT3s (2017) (60)
Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics (2019) (59)
Effects of Alu elements on global nucleosome positioning in the human genome (2010) (57)
DBTSS provides a tissue specific dynamic view of Transcription Start Sites (2009) (56)
Automatic extraction of motifs represented in the hidden Markov model from a number of DNA sequences (1998) (55)
DBTSS as an integrative platform for transcriptome, epigenome and genome sequence variation data (2014) (54)
Development and validation of a new high-throughput method to investigate the clonality of HTLV-1-infected cells based on provirus integration sites (2014) (53)
Sequence- and species-dependence of proteasomal processivity. (2012) (52)
Melina II: a web tool for comparisons among several predictive algorithms to find potential motifs from promoter regions (2007) (48)
Computational prediction of subcellular localization. (2007) (47)
Chemical composition is maintained in poorly conserved intrinsically disordered regions and suggests a means for their classification. (2012) (46)
Modeling and predicting transcriptional units of <$O_SSF>Escherichia coli<$C_SSF>genes using hidden Markov models (1999) (46)
Retrotransposition as a Source of New Promoters (2008) (45)
A novel bacterial gene-finding system with improved accuracy in locating start codons. (2001) (45)
Cancer gene expression database (CGED): a database for gene expression profiling with accompanying clinical information of human cancer tissues (2004) (45)
The membrane proteins encoded by yeast chromosome III genes (1993) (43)
Review: prediction of in vivo fates of proteins in the era of genomics and proteomics. (2001) (42)
Pseudocounts for transcription factor binding sites (2008) (42)
Stable feature selection based on the ensemble L1-norm support vector machine for biomarker discovery (2016) (40)
Genome-Wide Analysis of DNA Methylation and Expression of MicroRNAs in Breast Cancer Cells (2012) (40)
How many yeast genes code for membrane‐spanning proteins? (1993) (40)
DBTSS/DBKERO for integrated analysis of transcriptional regulation (2017) (37)
PAX6 Isoforms, along with Reprogramming Factors, Differentially Regulate the Induction of Cornea-specific Genes (2016) (37)
Determination of the Nucleotide Sequence ofBombyx mori Cytoplasmic Polyhedrosis Virus Segment 9 and Its Expression in BmN4 Cells (1998) (35)
DBTGR: a database of tunicate promoters and their regulatory elements (2005) (35)
Distinct class of putative "non-conserved" promoters in humans: comparative studies of alternative promoters of human and mouse genes. (2007) (34)
Diverse DNA methylation statuses at alternative promoters of human genes in various tissues. (2006) (33)
Large-scale analysis of human alternative protein isoforms: pattern classification and correlation with subcellular localization signals (2005) (33)
Sequence-based approach for identification of cell wall proteins in Saccharomyces cerevisiae (2002) (31)
Clonality of HTLV-1-infected T cells as a risk indicator for development and progression of adult T-cell leukemia. (2017) (30)
Linking Transcriptional Changes over Time in Stimulated Dendritic Cells to Identify Gene Networks Activated during the Innate Immune Response (2013) (30)
Predicting Various Targeting Signals in Amino Acid Sequences (1991) (29)
Predicting gene regulation by sigma factors in Bacillus subtilis from genome-wide data (2004) (29)
Genomic landscape of colitis-associated cancer indicates the impact of chronic inflammation and its stratification by mutations in the Wnt signaling (2017) (29)
Evaluation of Sequence Features from Intrinsically Disordered Regions for the Estimation of Protein Function (2014) (27)
Small open reading frames in 5' untranslated regions of mRnas. (2003) (27)
Isolation of full-length cDNA of mouse PAX4 gene and identification of its human homologue. (1998) (26)
A bacterial small RNA regulates the adaptation of Helicobacter pylori to the host environment (2021) (24)
Biomarker discovery by integrated joint non-negative matrix factorization and pathway signature analyses (2018) (24)
Gradual transition from mosaic to global DNA methylation patterns during deuterostome evolution (2010) (23)
Views: Fundamental Building Blocks in the Process of Knowledge Discovery (2001) (23)
The Exon Junction Complex Controls the Efficient and Faithful Splicing of a Subset of Transcripts Involved in Mitotic Cell-Cycle Progression (2016) (23)
A regression analysis of gene expression in ES cells reveals two gene classes that are significantly different in epigenetic patterns (2011) (23)
Broad Heterochromatic Domains Open in Gonocyte Development Prior to De Novo DNA Methylation. (2019) (22)
MELINA: motif extraction from promoter regions of potentially co-regulated genes (2003) (21)
Prediction of co-regulated genes in Bacillus subtilis on the basis of upstream elements conserved across three closely related species (2001) (21)
Prediction of in-vivo modification sites of proteins from their primary structures. (1988) (21)
Characterization of the compact bicistronic microRNA precursor, miR-1/miR-133, expressed specifically in Ciona muscle tissues. (2013) (21)
ZBTB16 as a Downstream Target Gene of Osterix Regulates Osteoblastogenesis of Human Multipotent Mesenchymal Stromal Cells (2016) (20)
Large-scale collection and characterization of promoters of human and mouse genes (2004) (20)
Detection and isolation of a novel human gene located on Xp11.2-p11.4 that escapes X-inactivation using a two-dimensional DNA mapping method. (1998) (20)
Modeling tissue-specific structural patterns in human and mouse promoters (2009) (20)
Genome-wide demethylation during neural differentiation of P19 embryonal carcinoma cells (2008) (19)
Transcriptional regulation of a horizontally transferred gene from bacterium to chordate (2016) (19)
Intrasplicing - Analysis of Long Intron Sequences (2002) (19)
Weak correlation between sequence conservation in promoter regions and in protein-coding regions of human-mouse orthologous gene pairs (2008) (19)
Genomic analysis of pancreatic juice DNA assesses malignant risk of intraductal papillary mucinous neoplasm of pancreas (2019) (18)
Functional Prediction of B. subtilis Genes from Their Regulatory Sequences (1997) (18)
An assessment of prediction algorithms for nucleosome positioning. (2009) (16)
RANK signaling induces interferon-stimulated genes in the fetal thymic stroma. (2011) (15)
A systematic sequencing-based approach for microbial contaminant detection and functional inference (2019) (15)
Profiling ascidian promoters as the primordial type of vertebrate promoter (2011) (15)
Encyclopedia of bioinformatics and computational biology (2019) (15)
Waves of chromatin modifications in mouse dendritic cells in response to LPS stimulation (2016) (14)
Multidisciplinary insight into clonal expansion of HTLV-1–infected cells in adult T-cell leukemia via modeling by deterministic finite automata coupled with high-throughput sequencing (2017) (12)
Challenges of the next decade for the Asia Pacific region: 2010 International Conference in Bioinformatics (InCoB 2010) (2010) (12)
Analyzing the 3D chromatin organization coordinating with gene expression regulation in B-cell lymphoma (2019) (12)
TimeXNet: Identifying active gene sub-networks using time-course gene expression profiles (2014) (12)
Advances, practice, and clinical perspectives in high-throughput sequencing. (2016) (12)
Integrative analysis of gene expression and DNA methylation using unsupervised feature extraction for detecting candidate cancer biomarkers (2018) (12)
Analysis of changes in transcription start site distribution by a classification approach. (2014) (11)
Protein design via deep learning (2022) (11)
Genome-wide identification and characterization of transcription start sites and promoters in the tunicate Ciona intestinalis (2016) (11)
An O(N/sup 2/) algorithm for discovering optimal Boolean pattern pairs (2004) (11)
Improvement of PSORT II Protein Sorting Prediction for Mammalian Proteins (2002) (11)
Finding Optimal Pairs of Cooperative and Competing Patterns with Bounded Distance (2004) (11)
iDNA-ABF: multi-scale deep biological language learning model for the interpretable prediction of DNA methylations (2022) (11)
Construction of a Membrane Protein Database and an Evaluation of Several Prediction Methods of Trans (1994) (11)
Tools for the Recognition of Sorting Signals and the Prediction of Subcellular Localization of Proteins From Their Amino Acid Sequences (2020) (11)
Differential display analysis of mutants for the transcription factor Pdr1p regulating multidrug resistance in the budding yeast (2001) (11)
Refinement of The Prediction Methods of Signal Peptides for The Genome Analyses of Saccharomyces cerevisiae and Bacillus subtilis (1996) (11)
HHEX promotes myeloid transformation in cooperation with mutant ASXL1. (2020) (10)
Finding Optimal Pairs of Patterns (2004) (10)
Whole genome sequencing analysis identifies recurrent structural alterations in esophageal squamous cell carcinoma (2020) (10)
Mutational Intratumor Heterogeneity is a Complex and Early Event in the Development of Adult T-cell Leukemia/Lymphoma (2018) (9)
Assessing the utility of gene co-expression stability in combination with correlation in the analysis of protein-protein interaction networks (2011) (9)
Predicting protein-peptide binding residues via interpretable deep learning (2022) (9)
Computational Promoter Modeling Identifies the Modes of Transcriptional Regulation in Hematopoietic Stem Cells (2014) (9)
A Genetic Algorithm for Motif Finding Based on Statistical Significance (2015) (9)
Gnome - an Internet-based sequence analysis tool (1994) (9)
Predicting promoter activities of primary human DNA sequences (2011) (8)
Generation of tumor antigen-specific murine CD8+ T cells with enhanced anti-tumor activity via highly efficient CRISPR/Cas9 genome editing (2018) (8)
Markov Chain-based Promoter Structure Modeling for Tissue-specific Expression Pattern Prediction (2008) (8)
Identification of novel motif patterns to decipher the promoter architecture of co-expressed genes in Arabidopsis thaliana (2013) (8)
A novel strategy to search conserved transcription factor binding sites among coexpressing genes in human. (2008) (8)
An O(N2) algorithm for discovering optimal Boolean pattern pairs. (2004) (7)
A Bit-Parallel Dynamic Programming Algorithm Suitable for DNA Sequence Alignment (2012) (7)
RNA-sequencing reveals positional memory of multipotent mesenchymal stromal cells from oral and maxillofacial tissue transcriptomes (2020) (7)
A study on the application of topic models to motif finding algorithms (2016) (7)
Inferring clonal structure in HTLV-1-infected individuals: towards bridging the gap between analysis and visualization (2017) (7)
Two different classes of co-occurring motif pairs found by a novel visualization method in human promoter regions (2008) (6)
Functional Annotation of Intrinsically Disordered Domains by Their Amino Acid Content Using IDD Navigator (2011) (6)
Positional variations among heterogeneous nucleosome maps give dynamical information on chromatin (2010) (6)
Parameter Landscape Analysis for Common Motif Discovery Programs (2004) (5)
Characterization of Transcription Start Sites of Putative Non-coding RNAs by Multifaceted Use of Massively Paralleled Sequencer (2010) (5)
Design and utility of CCN2 anchor peptide aptamers. (2010) (5)
Existence and possible roles of independent non-CpG methylation in the mammalian brain (2020) (5)
Genome-wide Analysis of Chlamydophila pneumoniae Gene Expression at the Late Stage of Infection (2008) (5)
The Origin and Evolution of Eukaryotic Protein Kinases (2002) (5)
DBTSS: DataBase of Human Transcriptional Start Sites and Full-Length cDNA (2001) (5)
Intrinsic Promoter Activities of Primary DNA Sequences in the Human Genome (2007) (5)
Cross-validated methods for promoter/transcription start site mapping in SL trans-spliced genes, established using the Ciona intestinalis troponin I gene (2010) (5)
Genome informatics for data-driven biology (2002) (4)
Qualitative differences in disease-associated MEK mutants reveal molecular signatures and aberrant signaling-crosstalk in cancer (2022) (4)
scIMC: a platform for benchmarking comparison and visualization analysis of scRNA-seq data imputation methods (2022) (4)
An Aberrant Splicing Database for Finding Rules of Splice-Site Selection (1999) (4)
A semi-supervised deep learning approach for predicting the functional effects of genomic non-coding variations (2021) (4)
Microheterogeneity in the polyhedrin gene of Bombyx mori, a cytoplasmic polyhedrosis virus (1998) (4)
ORI-GENE: gene classification based on the evolutionary tree (2001) (4)
InCoB2010 - 9th International Conference on Bioinformatics at Tokyo, Japan, September 26-28, 2010 (2010) (4)
Genome Structure, Functional Genomics, and Proteomics in Ascidians (2012) (4)
Spatial and temporal preferences for trans-splicing in Ciona intestinalis revealed by EST-based gene expression analysis. (2009) (4)
OpenTein: a database of digital whole-slide images of stem cell-derived teratomas (2015) (3)
Bayesian Joint Prediction of Associated Transcription Factors in Bacillus subtilis (2004) (3)
Modeling the cis-regulatory modules of genes expressed in developmental stages of Drosophila melanogaster (2017) (3)
DeepBIO: an automated and interpretable deep-learning platform for high-throughput biological sequence prediction, functional annotation and visualization analysis (2023) (3)
Using simple rules on presence and positioning of motifs for promoter structure modeling and tissue-specific expression prediction. (2008) (3)
Mutational diversity in mutY deficient Helicobacter pylori and its effect on adaptation to the gastric environment. (2020) (3)
Waves of chromatin modifications in mouse dendritic cells in response to LPS stimulation (2018) (3)
Prediction of Protein Localization (2019) (2)
Parameter Landscape Analysis for Improving the Performance of Common Motif Detection Algorithms (2002) (2)
Oligo-capped cDNAs for promoter identification and annotation (2002) (2)
Prediction of Co-Regulated Genes in Eubacterial Genomes by Phylogenetic Footprinting (2002) (2)
Correction: Integrative Annotation of 21,037 Human Genes Validated by Full-Length cDNA Clones (2004) (2)
Signaling Pathway of Taurine-Induced Upregulation of TXNIP (2022) (2)
Alterations in rRNA-mRNA interaction during plastid evolution. (2014) (2)
Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (2021) (2)
Innate Immunity Interactome Dynamics (2014) (2)
Information Science Should Take a Lead in Future Biomedical Research (2019) (2)
A Set of Structural Features Defines the Cis-Regulatory Modules of Antenna-Expressed Genes in Drosophila melanogaster (2014) (2)
Existence and possible roles of independent non-CpG methylation in the mammalian brain. (2020) (2)
Helicobacter small RNA regulates host adaptation and carcinogenesis (2020) (2)
Extraction of Biological Motifs by Gibbs Sampler from the Promoters of Homo Sapiens, Saccharomyces cerevisiae and Bacillus subtilis (2003) (2)
Discovery of Intermediary Genes between Pathways Using Sparse Regression (2015) (1)
Assignment of Certainty-Factor Parameters with a Given Reasoning Tree for the Prediction of Protein Localization Sites (1994) (1)
Vector competence of Aedes aegypti to dengue virus (2014) (1)
OpenContami: a web-based application for detecting microbial contaminants in next-generation sequencing data (2021) (1)
Proceedings of the 61th Annual Meeting of Southern Region. (2012) (1)
Recent Advances in the Prediction of Subcellular Localization of Proteins and Related Topics (2022) (1)
Computational Inference of Gene Regulation from Whole-Transcriptome Analysis of Early Embryos (2016) (1)
Extreme value theory as a framework for understanding mutation frequency distribution in cancer genomes (2021) (1)
Targeted deletion of miRNAs and cis-regulatory modules associated with cone opsin genes in medaka (2017) (1)
Characterizing Promoter and Enhancer Sequences by a Deep Learning Method (2021) (1)
Prediction of Co-Regulated Genes in Bacillus subtilis Based on the Conserved Upstream Elements across Three Closely Related Species (2001) (1)
Genome Wide Analysis Reveals Strong Correlation between CpG Islands and Tissue-Specificity (2003) (1)
GNOME: a sequence data management tool to access homology, motif, and other data analysis servers (1993) (1)
Seed-Set Construction by Equi-entropy Partitioning for Efficient and Sensitive Short-Read Mapping (2011) (1)
Sequence comparison between the transcription factor binding sites of Bacillus subtilis and other bacterial promoter regions. (2003) (0)
Prediction of Co-Regulated Genes in Prokaryotic Genomes on the Basis of Upstream Elements Conserved Across Closely Related Species (2001) (0)
Profiling the expressed genes identified in 3D chromosomal conformation analyses in mouse development (2017) (0)
Collection and Analysis of Eukaryotic Promoter Regions: DBTSS (DataBase of Transcriptional Start Sites) (2002) (0)
Biomarker discovery by integrated joint non-negative matrix factorization and pathway signature analyses (2018) (0)
Re nement of The Prediction Methods of Signal Peptides for The Genome Analyses of Saccharomyces cerevisiae and Bacillus subtilis (2001) (0)
"Melina" - Novel Tool for Elucidation of Consensus Motif in the Promoter Regions of Functionally Related DNA Sequences (2001) (0)
Upgraded Aberrant Splicing Database Supports the Scanning Mechanism of 3 ’ Splice-Site Selection (2000) (0)
A Method for Predicting Transcription Factors Using Local Regions of Biased Amino Acid Composition (2000) (0)
Formal modeling of clonal expansion of HTLV–1—infected cells in adult T–cell leukemia using high–throughput sequencing data (2016) (0)
Phylogenetic Comparison of Human and Mouse Promoter Regions and Visualization of a Variety of Conserved Elements (2004) (0)
Comprehensive Detection of Terminal Oligo-Pyrimidine (TOP) Genes in Human Genome (2006) (0)
Computational Analysis of microRNA Recognition Site (2005) (0)
Motif Analysis of Yeast Transcriptional Regulatory Regions (1997) (0)
2E1415 Prediction of co-regulated Mycoplasma genus genes by phylogenetic footprinting (2002) (0)
1P283 Construction and analyses of a non-interacting sites database for protein-protein interaction (2005) (0)
ISMB/ECCB 2013 Proceedings Papers Committee (2013) (0)
A Database of B. subtilis Promoters and Transcription Factors (1998) (0)
Transcriptome of the Inner Cell Mass and Trophectoderm in Bovine Blastocyst as Determined by Next Generation Sequencing. (2012) (0)
[Transcriptome analyses and transcriptome databases]. (2004) (0)
3D chromosome relaxation with TE-rich heterochromatin opening during de novo DNA methylation in gonocyte (2018) (0)
Modeling Tertiary Structure of Complementarity Determining Region of Antibodies (2005) (0)
RNA-Sequencing Reveals Unique Features of Multipotent Mesenchymal Stromal Cells from Oral and Maxillofacial Tissue Transcriptomes (2019) (0)
Non-CpG methylation pattern categories genes involved in brain aging (2017) (0)
Modeling Transcriptional Units of E. coli Genes Using HMM (1998) (0)
A systematic NGS-based approach for contaminant detection and functional inference (2019) (0)
[Tell me about algorithms in bioinformatics, Dr. Ochanomizu]. (2002) (0)
Generation of tumor-specific CD8+ T-cells via highly efficient CRISPR/Cas9 genome editing (2017) (0)
Development and validation of a new high-throughput method to investigate the clonality of HTLV-1-infected cells based on provirus integration sites (2014) (0)
RNA-sequencing reveals positional memory of multipotent mesenchymal stromal cells from oral and maxillofacial tissue transcriptomes (2020) (0)
Analyzing the 3D chromatin organization coordinating with gene expression regulation in B-cell lymphoma (2019) (0)
Comprehensive profiling of HTLV–1 infected cells based on mutation and integration site data coupled with phenotypic analysis of ATL progression. (2016) (0)
Comprehensive Promoter Analyses Using a Database of Transcription Start Sites ( DBTSS ) (2004) (0)
Review of: "CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression" (2021) (0)
[An opinion on where bioinformatics should proceed]. (2001) (0)
Introduction to bioinformatics. 4. Functional analysis of amino acid sequence. (1998) (0)
2P505 Protein tertiary structure prediction based on contact number prediction(51. New methods and tools (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006) (2006) (0)
Correction to: RNA-sequencing reveals positional memory of multipotent mesenchymal stromal cells from oral and maxillofacial tissue transcriptomes (2020) (0)
Stable feature selection based on the ensemble L1-norm support vector machine for biomarker discovery (2016) (0)
Extreme value theory as a general framework for understanding mutation frequency distribution in cancer genomes (2020) (0)
Conservation of regulation systems in firmicutes (2006) (0)
A systematic sequencing-based approach for microbial contaminant detection and functional inference (2019) (0)
Comprehensive comparison of gene expression diversity among a variety of human stem cells (2022) (0)
alpha-lactalbumin C30 domain of molecular dynamics (2003) (0)
TimeXNet Web: identifying cellular response networks from diverse omics time-course data (2018) (0)
Genome-wide chromatin structural analysis reveals inter-chromosomal translocations in B-cell lymphoma (2019) (0)
Phylogenetic Analysis of Eubacterial Transcriptional Systems Based on the DBTBS Database of B. subtilis Transcription Factors and Promoters (2003) (0)
A Probabilistic Inference System for The Prediction of Subcellular Localization Sites of Proteins: Application to E. coli Data (1995) (0)
S2d2-3 Comparative analysis of mamalian transcriptomes(S2-d2: "Bioinformatics of Transcriptional Regulation",Symposia,Abstract,Meeting Program of EABS & BSJ 2006) (2006) (0)
New laws on landfills. (1996) (0)
Multidisciplinary insight into clonal expansion of HTLV-1–infected cells in adult T-cell leukemia via modeling by deterministic finite automata coupled with high-throughput sequencing (2017) (0)
Comprehensive Analysis of Triplet Repeats in Vertebrate Genomes (2005) (0)
GeneHacker Plus : Yet Another Gene-Finding Program with Top-Class Accuracy in Locating Start Codons (2000) (0)
Supplementary material from "Transcriptional regulation of a horizontally transferred gene from bacterium to chordate" (2016) (0)
S2d2-2 Comparative analysis of firmicute promoters(S2-d2: "Bioinformatics of Transcriptional Regulation",Symposia,Abstract,Meeting Program of EABS & BSJ 2006) (2006) (0)
Gnome: Recent Developments (1994) (0)
Author Correction: Discovery of widespread transcription initiation at microsatellites predictable by sequence-based deep neural network (2022) (0)
Characterization of Subcellular Localization Signals Using HYPOTHESISCREATOR (2000) (0)
Biochemistry and Internet's utilization. 3. Sequence analysis by network. (1996) (0)
Differential landscape of non-CpG methylation in embryonic stem cells and neurons caused by DNMT3s (2017) (0)
Inferring clonal structure in HTLV-1-infected individuals: towards bridging the gap between analysis and visualization (2017) (0)
Sequence-Based Analyses of Biosynthesis Rate Limiting Factors in Wheat Germ Cell-Free System (2005) (0)
A study on the application of topic models to motif finding algorithms (2016) (0)
Prediction of Protein-Binding Sites in DNA Sequences (2019) (0)
Study of Emotional Tag for Lifelog (2012) (0)
Correction to: RNA-sequencing reveals positional memory of multipotent mesenchymal stromal cells from oral and maxillofacial tissue transcriptomes (2020) (0)
Comparative Sequence Analysis of Human and Mouse Promoter Regions (2005) (0)
Relaxation of transposon-rich chromosomal domains in germ cells (2017) (0)
Introduction to Selected Papers from GIW2018 (2018) (0)
Scattered Distribution of Transcription Start Sites Confers Retrotransposability to the Promoters (2007) (0)
THE JAPANESE SOCIETY OF BIOINFORMATICS (JSBi) (2007) (0)
Does an Aberrant Spllcing Database Imply Rules for Splice Site Selection (1992) (0)
In silico analysis of trans -splicing in the primitive chordate, Ciona intestinalis (2017) (0)
[Computational analyses of signal information encoded within genome data]. (2001) (0)
Sequence Analysis of Less Hydrophobic Transmembrane Segments in Polytopic Membrane Proteins (2000) (0)
Impacts of the ENCODE Project (2013) (0)
The Human Genome Project : Childhood's End (2000) (0)
Global gene expression of the inner cell mass and trophectoderm of the bovine blastocyst (2012) (0)
3P303 Computational prediction of mitochondrial inner membrane proteins(Bioinformatics: Functional genomics,The 48th Annual Meeting of the Biophysical Society of Japan) (2010) (0)
A hypothetical trivalent epigenetic code that affects the nature of human ESCs (2020) (0)
Analysis of Aberrant Splicing Data (2002) (0)
A Database for Comparative Analysis of Tunicate Promoter Sequences (2005) (0)
Homeobox Transcription Factor Hhex Promotes Myeloid Leukemia in Cooperation with Mutant ASXL1 (2019) (0)
3P304 Prediction of cis-regulatory DNAs in the ascidian genome by comparative genomics and computational methods (2005) (0)
response to LPS stimulation (2016) (0)

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