Kevin Karplus | Academic Influence

Kevin Karplus's AcademicInfluence.com Rankings

Kevin Karplus

Computer Science

#1520

World Rank

#1574

Historical Rank

#749

USA Rank

Machine Learning

#5125

World Rank

#5190

Historical Rank

#198

USA Rank

Artificial Intelligence

#5534

World Rank

#5612

Historical Rank

#313

USA Rank

computer-science Degrees

Kevin Karplus

Mathematics

#7699

World Rank

#10448

Historical Rank

#2088

USA Rank

Measure Theory

#3057

World Rank

#3626

Historical Rank

#887

USA Rank

mathematics Degrees

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Computer Science
Mathematics

Kevin Karplus's Degrees

PhD Computer Science Stanford University
Masters Computer Science Stanford University
Bachelors Mathematics Stanford University

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Why Is Kevin Karplus Influential?

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According to Wikipedia, Kevin Karplus is a professor emeritus at University of California, Santa Cruz, currently in the Biomolecular Engineering Department. He is probably best known for work he did as a computer science graduate student at Stanford University on the Karplus–Strong string synthesis algorithm.

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Kevin Karplus's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega (2011) (11978)
Hidden Markov models for detecting remote protein homologies (1998) (1220)
Assignment of homology to genome sequences using a library of hidden Markov models that represent all proteins of known structure. (2001) (1207)
Improving physical realism, stereochemistry, and side‐chain accuracy in homology modeling: Four approaches that performed well in CASP8 (2009) (1093)
Sequence comparisons using multiple sequences detect three times as many remote homologues as pairwise methods. (1998) (587)
Automated Forward and Reverse Ratcheting of DNA in a Nanopore at Five Angstrom Precision1 (2012) (402)
Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology (1996) (395)
Digital Synthesis of Plucked-String and Drum Timbers (1983) (345)
A Flexible Motif Search Technique Based on Generalized Profiles (1996) (304)
Combining local‐structure, fold‐recognition, and new fold methods for protein structure prediction (2003) (301)
Classifying G-protein coupled receptors with support vector machines (2002) (298)
Hidden Markov models that use predicted local structure for fold recognition: Alphabets of backbone geometry (2003) (216)
CAFASP‐1: Critical assessment of fully automated structure prediction methods (1999) (192)
Predicting protein structure using hidden Markov models (1997) (182)
Error rates for nanopore discrimination among cytosine, methylcytosine, and hydroxymethylcytosine along individual DNA strands (2013) (156)
Predicting protein structure using only sequence information (1999) (152)
What is the value added by human intervention in protein structure prediction? (2001) (135)
SAM-T08, HMM-based protein structure prediction (2009) (132)
Identification and Characterization of RbmA, a Novel Protein Required for the Development of Rugose Colony Morphology and Biofilm Structure in Vibrio cholerae (2006) (128)
Xmap: a technology mapper for table-lookup field-programmable gate arrays (1991) (121)
Contact prediction using mutual information and neural nets (2007) (117)
SAM‐T04: What is new in protein–structure prediction for CASP6 (2005) (117)
Evaluation of protein multiple alignments by SAM-T99 using the BAliBASE multiple alignment test set (2001) (111)
Scoring hidden Markov models (1997) (106)
Predicting reliable regions in protein sequence alignments (2002) (104)
Using if-then-else DAGs for multi-level logic minimization (1989) (80)
Computing Signal Delay in General RC Networks by Tree/Link Partitioning (1989) (76)
Optimal wiring between rectangles (1981) (69)
Evaluation of local structure alphabets based on residue burial (2004) (67)
Information‐theoretic dissection of pairwise contact potentials (2002) (66)
Fallacy of the Unique Genome: Sequence Diversity within Single Helicobacter pylori Strains (2017) (65)
The UCSC Kestrel parallel processor (2005) (63)
Calibrating E-values for hidden Markov models using reverse-sequence null models (2005) (58)
Amap: a technology mapper for selector-based field-programmable gate arrays (1991) (54)
Kestrel: A Programmable Array for Sequence Analysis (1996) (48)
Currents in Computational Molecular Biology (2000) (47)
Nucleotide excision repair "a legacy of creativity". (2001) (46)
The delta rule development system for speech synthesis from text (1985) (45)
PREDICT-2ND: a tool for generalized protein local structure prediction (2008) (42)
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology (1996) (36)
Improving protein secondary structure prediction using a simple k-mer model (2010) (36)
Identification of a Chemoreceptor Zinc-Binding Domain Common to Cytoplasmic Bacterial Chemoreceptors (2011) (35)
Identification of prokaryotic small proteins using a comparative genomic approach (2011) (34)
A ?ex-ible search technique based on generalized profiles (1996) (28)
Analysis of nanopore data using hidden Markov models (2015) (28)
Evaluating Regularizers for Estimating Distributions of Amino Acids (1995) (27)
REGULARIZERS FOR ESTIMATING DISTRIBUTIONS OF AMINO ACIDS FROM SMALL SAMPLES (1995) (26)
Model quality assessment using distance constraints from alignments (2009) (24)
Applying undertaker cost functions to model quality assessment (2009) (24)
REPRESENTING BOOLEAN FUNCTIONS WITH IF-THEN-ELSE DAGs (1988) (23)
Bioinformatics: a new field in engineering education (2001) (19)
SAM-T 08 , HMM-based Protein Structure Prediction (2009) (19)
Kestrel: design of an 8-bit SIMD parallel processor (1997) (18)
USING IF-THEN-ELSE DAGS TO DO TECHNOLOGY MAPPING FOR FIELD-PROGRAMMABLE GATE ARRAYS (1990) (14)
Applying Undertaker to quality assessment (2009) (13)
Pokefind: a novel topological filter for use with protein structure prediction (2009) (12)
Evaluating local structure alphabets for protein structure prediction (2003) (12)
Finding minimal perfect hash functions (1986) (12)
Efficient hardware for multiway jumps and pre-fetches (1985) (11)
Complete genome sequence of Pyrobaculum oguniense (2012) (11)
Optimal Hidden Markov Models for All Sequences of Known Structure (2000) (11)
A semi-systolic decoder for the PDSC-73 error-correcting code (1991) (11)
ITEM: an if-then-else minimizer for logic synthesis (1992) (10)
Exclusion constraints: a new application of graph algorithms to VLSI design (1986) (10)
A homolog of mammalian antizyme is present in fission yeast Schizosaccharomyces pombe but not detected in budding yeast Saccharomyces cerevisiae (2000) (10)
SPrCY: comparison of structural predictions in the Saccharomyces cerevisiae genome (2004) (8)
USING MARKOV MODELS AND HIDDEN MARKOV MODELS TO FIND REPETITIVE EXTRAGENIC PALINDROMIC SEQUENCES IN ESCHERICHIA COLI (1994) (7)
ON ALIGNMENT SHIFT AND ITS MEASURES (1998) (6)
Protein sequence alignment reliability: prediction and measurement (2000) (5)
Segmentation of Noisy Signals Generated By a Nanopore (2015) (4)
CHISEL: an extension to the programming language C for VLSI layout (1983) (4)
Xtmap: generate-and-test mapper for table-lookup gate arrays (1993) (3)
Logic minimization using two-column rectangle replacement (1991) (3)
Methods of translating NMR proton distances into their corresponding heavy atom distances for protein structure prediction with limited experimental data. (2005) (2)
A compiler-driven supercomputer (1986) (2)
Getting High Performance with Slow Memory (1986) (2)
Formal Model of MOS Clocking Disciples (1984) (2)
Protein Packing Quality Using Delaunay Complexes (2011) (1)
Faculty Opinions recommendation of Bayesian statistical analysis of protein side-chain rotamer preferences. (2008) (1)
Applied Analog Electronics (2022) (0)
Statistical Signi cance for Reverse-sequence DIMACS Estimating Statistical Signi cance for Reverse-sequence Null Models (0)
Session F2B BIOINFORMATICS : A NEW FIELD IN ENGINEERING EDUCATION (2001) (0)
BME 194: Applied Circuits Lab 10: EKG (0)
System for generating musical sound (1994) (0)
Proceedings of the 5th International Conference on Intelligent Systems for Molecular Biology, Halkidiki, Greece, June 21-26, 1997 (1997) (0)
Digital signal processing device for generating musical sound (1994) (0)
Covariation of mutations: A computational approach for determination of function and structure from sequence (1998) (0)
Faculty Opinions recommendation of Knotted fusion proteins reveal unexpected possibilities in protein folding. (2009) (0)
Faculty Opinions recommendation of Sequence context-specific profiles for homology searching. (2009) (0)
HMMs and secondary structure Fold Recognition using Hidden Markov Models and Secondary Structure (0)
USING THE ucsc-report LaTeX STYLE FILE FOR UCSC TECHNICAL REPORTS (1992) (0)
Theorem 3.3 the Optimal Ooset for River Routing Can Be Found with O(n Lglg N) (0)
Faculty Opinions recommendation of Design parameters to control synthetic gene expression in Escherichia coli. (2009) (0)
ROPE: A New Twist in Computer Architectures (1987) (0)
Kevin Karplus Computer Science Department Cornell University Ithaca , New York 14853 Alex Strong Computer Science Department Stanford University Stanford , California 94305 Introduction (2007) (0)
A proof of the isomorphism of wxyz-transformals and 2 x 2 integer matrices (1981) (0)
Waveform table modification instrument and method for musical tone generation. (1984) (0)
Title Fast , scalable generation of high-quality protein multiplesequence alignments using Clustal Omega (2017) (0)
CMPE 185 Winter 2003 Syllabus (2003) (0)
Sequence analysis Analysis of nanopore data using hidden Markov models (2015) (0)
The Delta System for synthesis rules (1984) (0)
Simple jury predicts protein secondary structure best (2003) (0)

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