Kimmen Sjölander

Q: What Schools Are Affiliated With Kimmen Sjölander

Kimmen Sjölander is affiliated with the following schools: University of California, Berkeley, California Institute of Technology, Stanford University, University of California, Santa Cruz

Kimmen Sjölander's AcademicInfluence.com Rankings

Kimmen Sjölander

Engineering

#7611

World Rank

#9001

Historical Rank

#1342

USA Rank

Bioengineering

#86

World Rank

#88

Historical Rank

#18

USA Rank

Biomedical Engineering

#905

World Rank

#922

Historical Rank

#77

USA Rank

engineering Degrees

Download Badge

Engineering

Kimmen Sjölander's Degrees

Bachelors Biomedical Engineering Stanford University
PhD Biomedical Engineering California Institute of Technology

Why Is Kimmen Sjölander Influential?

(Suggest an Edit or Addition)

According to Wikipedia, Kimmen Sjölander is professor emerita at the University of California, Berkeley in the Department of Bioengineering. She is well known for her work on protein sequence analysis. Biography Sjölander did both her undergraduate and graduate work at the University of California, Santa Cruz in the Department of Computer Science, earning a bachelor's degree in 1993 and a PhD in 1997 under the supervision of David Haussler. She was the chief scientist in the Molecular Applications Group from 1997-1999 and then principal scientist in Protein Informatics at Celera Genomics from 1999-2001, where she was a member of the team who assembled and annotated the Human Genome. She joined the faculty at the University of California, Berkeley in the Department of Bioengineering in 2001 as an assistant professor. She was tenured in 2006, and promoted to full professor in 2012.

(See a Problem?)

Kimmen Sjölander's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

The Sequence of the Human Genome (2001) (6572)
Hidden Markov models in computational biology. Applications to protein modeling. (1993) (2055)
The Arabidopsis thaliana Chloroplast Proteome Reveals Pathway Abundance and Novel Protein Functions (2004) (585)
Stochastic context-free grammars for tRNA modeling. (1994) (442)
Dirichlet mixtures: a method for improved detection of weak but significant protein sequence homology (1996) (395)
From Endonucleases to Transcription Factors: Evolution of the AP2 DNA Binding Domain in Plantsw⃞ (2004) (243)
Phylogenomic Analysis of the Receptor-Like Proteins of Rice and Arabidopsis1[w] (2005) (220)
Using Dirichlet Mixture Priors to Derive Hidden Markov Models for Protein Families (1993) (220)
Phylogenomic inference of protein molecular function: advances and challenges (2004) (207)
Functional Analysis of Avr9/Cf-9 Rapidly Elicited Genes Identifies a Protein Kinase, ACIK1, That Is Essential for Full Cf-9–Dependent Disease Resistance in Tomatow⃞ (2005) (184)
Predicting protein structure using hidden Markov models (1997) (182)
The interface of protein structure, protein biophysics, and molecular evolution (2012) (171)
Molecular characterization of proteolytic cleavage sites of the Pseudomonas syringae effector AvrRpt2. (2005) (153)
The COMBREX Project: Design, Methodology, and Initial Results (2013) (137)
A comparison of scoring functions for protein sequence profile alignment (2004) (137)
Protein modeling using hidden Markov models: analysis of globins (1993) (133)
Automated Protein Subfamily Identification and Classification (2007) (125)
Proteome Analysis of the Rice Etioplast (2005) (111)
Distribution and properties of the genes encoding the biosynthesis of the bacterial cofactor, pyrroloquinoline quinone. (2012) (101)
SATCHMO: Sequence Alignment and Tree Construction Using Hidden Markov Models (2003) (99)
COACH: profile-profile alignment of protein families using hidden Markov models (2004) (98)
Berkeley PHOG: PhyloFacts orthology group prediction web server (2009) (85)
Functional Classification Using Phylogenomic Inference (2006) (77)
INTREPID—INformation-theoretic TREe traversal for Protein functional site IDentification (2008) (77)
Phylogenetic Inference in Protein Superfamilies: Analysis of SH2 Domains (1998) (74)
Active site prediction using evolutionary and structural information (2010) (71)
PhyloFacts: an online structural phylogenomic encyclopedia for protein functional and structural classification (2006) (65)
FlowerPower: clustering proteins into domain architecture classes for phylogenomic inference of protein function (2007) (63)
Predicted hexameric structure of the Agrobacterium VirB4 C terminus suggests VirB4 acts as a docking site during type IV secretion. (2005) (62)
Taking the first steps towards a standard for reporting on phylogenies: Minimum Information About a Phylogenetic Analysis (MIAPA). (2006) (58)
Recent Methods for RNA Modeling Using Stochastic Context-Free Grammars (1994) (55)
Arabidopsis downy mildew resistance gene RPP27 encodes a receptor-like protein similar to CLAVATA2 and tomato Cf-9. (2004) (45)
INTREPID: a web server for prediction of functionally important residues by evolutionary analysis (2009) (40)
Ortholog identification in the presence of domain architecture rearrangement (2011) (36)
Arabidopsis Downy Mildew Resistance Gene RPP27 Encodes a Receptor-Like Protein Similar to CLAVATA2 and Tomato Cf-91 (2004) (31)
Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis (2007) (31)
SATCHMO-JS: a webserver for simultaneous protein multiple sequence alignment and phylogenetic tree construction (2010) (29)
The PhyloFacts FAT-CAT web server: ortholog identification and function prediction using fast approximate tree classification (2013) (28)
THE APPLICATION OF STOCHASTIC CONTEXT-FREE GRAMMARS TO FOLDING, ALIGNING AND MODELING HOMOLOGOUS RNA SEQUENCES (1993) (27)
Arabidopsis thaliana PGR7 Encodes a Conserved Chloroplast Protein That Is Necessary for Efficient Photosynthetic Electron Transport (2010) (22)
ResBoost: characterizing and predicting catalytic residues in enzymes (2009) (20)
Subfamily HMMS in Functional Genomics (2004) (20)
The Generation Challenge Programme comparative plant stress-responsive gene catalogue (2007) (19)
Getting Started in Structural Phylogenomics (2010) (14)
Simultaneous Sequence Alignment and Tree Construction Using Hidden Markov Models (2002) (14)
Collaborative annotation of genes and proteins between UniProtKB/Swiss-Prot and dictyBase (2009) (12)
Phylogenomic Inference of Protein Molecular Function (2005) (6)
A Bayesian-information theoretic method for evolutionary inference in proteins (1997) (4)
Hidden Markov Models in Computational Biology: Applications to Protein Modeling UCSC-CRL-93-32 (1993) (3)
Phylogenomic Databases and Orthology Prediction (2013) (2)
“dcGO”: a Domain-Centric Gene Ontology Predictor for Functional Genomics Julian Gough Flexible Graphlet Kernels for Functional Residue Prediction in Protein Structures Jose Lugo-Martinez FAT-CAT (Fast Approximate Tree ClassificATion): A Scalable Method for (Meta)Genome Functional and Taxonomic Class (2012) (1)
Basic protein sequence analysis. (2005) (1)
Functional prediction through phylogenetic inference and structural classification of proteins (2006) (1)
Final Report - Phylogenomic tools and web resources for the Systems Biology Knowledgebase (2014) (0)
Covariation of mutations: A computational approach for determination of function and structure from sequence (1998) (0)
Defending the Arabidosolanaceae (Poster presentation) (2004) (0)
DOE Joint Genome Institute Strategic Planning for the Genomic Sciences. Report from the May 30–31, 2012, Workshop (2012) (0)
Genome Analysis Phylogenomic Analysis of the Receptor-Like Proteins of Rice and Arabidopsis 1 [ w ] (2005) (0)
Structural Phylogenomic Inference of Plant Gene Function (2008) (0)
Disease resistance mechanisms triggered by extracellular elicitors (2004) (0)
Basic Protein Sequence Analysis (2005) (0)
Extramurally Speaking Nanotechnology and Nanoengineering (2001) (0)
THE PHYLOFACTS PHYLOGENOMIC ENCYCLOPEDIAS: STRUCTURAL PHYLOGENOMIC ANALYSIS ACROSS THE TREE OF LIFE (2007) (0)

This paper list is powered by the following services:

Other Resources About Kimmen Sjölander

en.wikipedia.org

What Schools Are Affiliated With Kimmen Sjölander?

Kimmen Sjölander is affiliated with the following schools:

Kimmen Sjölander's Academic­Influence.com Rankings

Kimmen Sjölander's Degrees

Why Is Kimmen Sjölander Influential?

Kimmen Sjölander's Published Works

Published Works

Other Resources About Kimmen Sjölander

What Schools Are Affiliated With Kimmen Sjölander?

Kimmen Sjölander's AcademicInfluence.com Rankings