Kira Makarova | Academic Influence

Kira Makarova's AcademicInfluence.com Rankings

Kira Makarova

Biology

#4840

World Rank

#7167

Historical Rank

Evolutionary Biology

#169

World Rank

#190

Historical Rank

Genetics

#611

World Rank

#694

Historical Rank

biology Degrees

Download Badge

Biology

Kira Makarova's Degrees

Bachelors Biology University of Tartu
Masters Evolutionary Biology University of Tartu
PhD Evolutionary Biology University of Tartu

Similar Degrees You Can Earn

Best Online Bachelor's in Biology 2025

Why Is Kira Makarova Influential?

(Suggest an Edit or Addition)

According to Wikipedia, Kira S. Makarova is an Estonian-American evolutionary biologist known for her research on the biology of CRISPR and Cas9. She is a staff scientist at the National Center for Biotechnology Information.

(See a Problem?)

Kira Makarova's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

Cpf1 Is a Single RNA-Guided Endonuclease of a Class 2 CRISPR-Cas System (2015) (2978)
Small CRISPR RNAs Guide Antiviral Defense in Prokaryotes (2008) (2144)
In vivo genome editing using Staphylococcus aureus Cas9 (2015) (2132)
Evolution and classification of the CRISPR–Cas systems (2011) (2084)
An updated evolutionary classification of CRISPR–Cas systems (2015) (1822)
C2c2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector (2016) (1335)
Comparative genomics of the lactic acid bacteria (2006) (1274)
Horizontal gene transfer in prokaryotes: quantification and classification. (2001) (1152)
A putative RNA-interference-based immune system in prokaryotes: computational analysis of the predicted enzymatic machinery, functional analogies with eukaryotic RNAi, and hypothetical mechanisms of action (2006) (1065)
Expanded microbial genome coverage and improved protein family annotation in the COG database (2014) (1062)
Genome sequence of the radioresistant bacterium Deinococcus radiodurans R1. (1999) (919)
Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants (2019) (899)
Diversity, classification and evolution of CRISPR-Cas systems. (2017) (891)
Discovery and Functional Characterization of Diverse Class 2 CRISPR-Cas Systems. (2015) (853)
Genome Sequence and Comparative Analysis of the Solvent-Producing Bacterium Clostridium acetobutylicum (2001) (814)
A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes (2004) (810)
Genome of the Extremely Radiation-Resistant Bacterium Deinococcus radiodurans Viewed from the Perspective of Comparative Genomics (2001) (680)
Diversity and evolution of class 2 CRISPR–Cas systems (2017) (674)
The Wolbachia Genome of Brugia malayi: Endosymbiont Evolution within a Human Pathogenic Nematode (2005) (588)
Accumulation of Mn(II) in Deinococcus radiodurans Facilitates Gamma-Radiation Resistance (2004) (581)
Diverse evolutionary roots and mechanistic variations of the CRISPR-Cas systems (2016) (486)
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome (2003) (465)
Crystal Structure of Cpf1 in Complex with Guide RNA and Target DNA (2016) (438)
Unification of Cas protein families and a simple scenario for the origin and evolution of CRISPR-Cas systems (2011) (423)
Comprehensive comparative-genomic analysis of Type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes (2009) (404)
Classification and evolution of type II CRISPR-Cas systems (2014) (383)
Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation (2003) (369)
Cas13b is a Type VI-B CRISPR-associated RNA-Guided RNase differentially regulated by accessory proteins Csx27 and Csx28 (2016) (368)
A DNA repair system specific for thermophilic Archaea and bacteria predicted by genomic context analysis. (2002) (356)
Comparative genomics of defense systems in archaea and bacteria (2013) (339)
The evolutionary journey of Argonaute proteins (2014) (327)
RNA-guided DNA insertion with CRISPR-associated transposases (2019) (326)
Phylogeny of Cas9 determines functional exchangeability of dual-RNA and Cas9 among orthologous type II CRISPR-Cas systems (2013) (321)
Comparative genomics of the FtsK-HerA superfamily of pumping ATPases: implications for the origins of chromosome segregation, cell division and viral capsid packaging. (2004) (309)
The cyanobacterial genome core and the origin of photosynthesis (2006) (304)
SURVEY AND SUMMARY: holliday junction resolvases and related nucleases: identification of new families, phyletic distribution and evolutionary trajectories. (2000) (294)
ATGL has a key role in lipid droplet/adiposome degradation in mammalian cells (2006) (290)
The complete genome of hyperthermophile Methanopyrus kandleri AV19 and monophyly of archaeal methanogens (2002) (289)
Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. (1999) (286)
Cas13d is a compact RNA-targeting type VI CRISPR effector positively modulated by a WYL domain-containing accessory protein (2018) (286)
A korarchaeal genome reveals insights into the evolution of the Archaea (2008) (282)
Defense Islands in Bacterial and Archaeal Genomes and Prediction of Novel Defense Systems (2011) (266)
Abundance of type I toxin–antitoxin systems in bacteria: searches for new candidates and discovery of novel families (2010) (264)
Evolutionary Genomics of Lactic Acid Bacteria (2006) (261)
A novel superfamily of predicted cysteine proteases from eukaryotes, viruses and Chlamydia pneumoniae. (2000) (259)
Annotation and Classification of CRISPR-Cas Systems. (2015) (244)
Functionally diverse type V CRISPR-Cas systems (2019) (243)
How radiation kills cells: survival of Deinococcus radiodurans and Shewanella oneidensis under oxidative stress. (2005) (242)
COG database update: focus on microbial diversity, model organisms, and widespread pathogens (2020) (241)
The rhomboids: a nearly ubiquitous family of intramembrane serine proteases that probably evolved by multiple ancient horizontal gene transfers (2003) (229)
Deinococcus geothermalis: The Pool of Extreme Radiation Resistance Genes Shrinks (2007) (226)
Evolution of diverse cell division and vesicle formation systems in Archaea (2010) (221)
Myosin XI-K Is Required for Rapid Trafficking of Golgi Stacks, Peroxisomes, and Mitochondria in Leaf Cells of Nicotiana benthamiana1[W][OA] (2008) (218)
Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia (2008) (211)
Prokaryotic homologs of Argonaute proteins are predicted to function as key components of a novel system of defense against mobile genetic elements (2009) (207)
CRISPR EVOLUTION C 2 c 2 is a single-component programmable RNA-guided RNA-targeting CRISPR effector (2016) (207)
Evolutionary Genomics of Defense Systems in Archaea and Bacteria. (2017) (205)
A Novel Family of Sequence-specific Endoribonucleases Associated with the Clustered Regularly Interspaced Short Palindromic Repeats* (2008) (203)
Connected gene neighborhoods in prokaryotic genomes. (2002) (201)
Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing (2013) (201)
Engineering of CRISPR-Cas12b for human genome editing (2019) (201)
Discovery of an expansive bacteriophage family that includes the most abundant viruses from the human gut (2017) (200)
Kinase Activity of Overexpressed HipA Is Required for Growth Arrest and Multidrug Tolerance in Escherichia coli (2006) (194)
Inventing the dynamo machine: the evolution of the F-type and V-type ATPases (2007) (189)
Clusters of orthologous genes for 41 archaeal genomes and implications for evolutionary genomics of archaea (2007) (184)
Origins and evolution of CRISPR-Cas systems (2019) (180)
Lineage-specific gene expansions in bacterial and archaeal genomes. (2001) (178)
Comparative genomics of Thermus thermophilus and Deinococcus radiodurans: divergent routes of adaptation to thermophily and radiation resistance (2005) (175)
The Deep Archaeal Roots of Eukaryotes (2008) (174)
Diverse enzymatic activities mediate antiviral immunity in prokaryotes (2020) (174)
A superfamily of archaeal, bacterial, and eukaryotic proteins homologous to animal transglutaminases (1999) (174)
Archaeal Clusters of Orthologous Genes (arCOGs): An Update and Application for Analysis of Shared Features between Thermococcales, Methanococcales, and Methanobacteriales (2015) (173)
Ancestral paralogs and pseudoparalogs and their role in the emergence of the eukaryotic cell (2005) (169)
The CRISPR Spacer Space Is Dominated by Sequences from Species-Specific Mobilomes (2017) (163)
Genomic analysis of Oenococcus oeni PSU-1 and its relevance to winemaking. (2005) (162)
Two C or not two C: recurrent disruption of Zn-ribbons, gene duplication, lineage-specific gene loss, and horizontal gene transfer in evolution of bacterial ribosomal proteins (2001) (160)
Phylogenomics of prokaryotic ribosomal proteins (2011) (160)
Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity (2014) (159)
Discovery of extremely halophilic, methyl-reducing euryarchaea provides insights into the evolutionary origin of methanogenesis (2017) (155)
Recruitment of CRISPR-Cas systems by Tn7-like transposons (2017) (155)
Evolution of mosaic operons by horizontal gene transfer and gene displacement in situ (2003) (152)
Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer (2012) (150)
GINS, a central nexus in the archaeal DNA replication fork (2006) (148)
Evolutionary primacy of sodium bioenergetics (2008) (148)
CRISPR–Cas in mobile genetic elements: counter-defence and beyond (2019) (146)
CARF and WYL domains: ligand-binding regulators of prokaryotic defense systems (2014) (144)
The basic building blocks and evolution of CRISPR-CAS systems. (2013) (144)
Genome sequence of the deep-sea γ-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy (2004) (138)
Physiologic Determinants of Radiation Resistance inDeinococcus radiodurans (2000) (137)
SnapShot: Class 2 CRISPR-Cas Systems (2017) (134)
CRISPR-Cas (2013) (131)
Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. (2005) (126)
Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes (2012) (125)
Microbial genome analysis: the COG approach (2019) (120)
Congruent evolution of different classes of non-coding DNA in prokaryotic genomes. (2002) (120)
Genome-Based Bioinformatic Selection of Chromosomal Bacillus anthracis Putative Vaccine Candidates Coupled with Proteomic Identification of Surface-Associated Antigens (2003) (117)
A genomic analysis of the archaeal system Ignicoccus hospitalis-Nanoarchaeum equitans (2008) (115)
Anti-CRISPR proteins encoded by archaeal lytic viruses inhibit subtype I-D immunity (2018) (113)
Evolutionary entanglement of mobile genetic elements and host defence systems: guns for hire (2019) (113)
Evolution of DNA polymerases: an inactivated polymerase-exonuclease module in Pol ε and a chimeric origin of eukaryotic polymerases from two classes of archaeal ancestors (2009) (112)
Systematic prediction of genes functionally linked to CRISPR-Cas systems by gene neighborhood analysis (2018) (110)
The HicAB cassette, a putative novel, RNA-targeting toxin-antitoxin system in archaea and bacteria (2006) (110)
Mobile Genetic Elements and Evolution of CRISPR-Cas Systems: All the Way There and Back (2017) (106)
SnapShot: Class 1 CRISPR-Cas Systems (2017) (102)
Comparative genomics of archaea: how much have we learned in six years, and what's next? (2003) (102)
Conservation of the binding site for the arginine repressor in all bacterial lineages (2001) (100)
The Zn-peptidase superfamily: functional convergence after evolutionary divergence. (1999) (98)
Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park (2013) (97)
Expanded diversity of Asgard archaea and their relationships with eukaryotes (2021) (93)
CRISPR-Cas: an adaptive immunity system in prokaryotes (2009) (90)
The CMG (CDC45/RecJ, MCM, GINS) complex is a conserved component of the DNA replication system in all archaea and eukaryotes (2012) (89)
Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae. (2004) (87)
Nature and Intensity of Selection Pressure on CRISPR-Associated Genes (2011) (84)
Potential genomic determinants of hyperthermophily. (2003) (84)
Programmable RNA targeting with the single-protein CRISPR effector Cas7-11 (2021) (83)
Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1 (2008) (82)
Dimeric dUTPases, HisE, and MazG belong to a new superfamily of all-alpha NTP pyrophosphohydrolases with potential "house-cleaning" functions. (2005) (81)
Expression, Splicing, and Evolution of the Myosin Gene Family in Plants1[W][OA] (2011) (81)
Diversity and Evolution of Type IV pili Systems in Archaea (2016) (77)
Identification of Myosin XI Receptors in Arabidopsis Defines a Distinct Class of Transport Vesicles[W][OPEN] (2013) (75)
SWIM, a novel Zn-chelating domain present in bacteria, archaea and eukaryotes. (2002) (73)
Role of Hypermutability in the Evolution of the Genus Oenococcus (2007) (73)
Cas 13 b Is a Type VIB CRISPR-Associated RNA-Guided RNase Differentially Regulated by Accessory Proteins Csx 27 and Csx 28 (2017) (72)
Computational approaches for the analysis of gene neighbourhoods in prokaryotic genomes (2004) (69)
Initial Proteome Analysis of Model Microorganism Haemophilus influenzae Strain Rd KW20 (2003) (68)
The widespread IS200/IS605 transposon family encodes diverse programmable RNA-guided endonucleases (2021) (68)
Differential translation tunes uneven production of operon-encoded proteins. (2013) (67)
‘ARMAN’ archaea depend on association with euryarchaeal host in culture and in situ (2017) (65)
Classification and Nomenclature of CRISPR-Cas Systems: Where from Here? (2018) (64)
Functional Diversity of Haloacid Dehalogenase Superfamily Phosphatases from Saccharomyces cerevisiae (2015) (64)
Evolution of replicative DNA polymerases in archaea and their contributions to the eukaryotic replication machinery (2014) (62)
The genome of AR9, a giant transducing Bacillus phage encoding two multisubunit RNA polymerases. (2016) (57)
CRISPR-Cas: Complex Functional Networks and Multiple Roles beyond Adaptive Immunity. (2019) (54)
Evolutionary and functional genomics of the Archaea. (2005) (53)
The Complete Genome Sequence of Thermoproteus tenax: A Physiologically Versatile Member of the Crenarchaeota (2011) (53)
The Structure and Evolution of Penelope in the virilis Species Group of Drosophila: An Ancient Lineage of Retroelements (2001) (52)
Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes (2014) (50)
Evolutionary classification of CRISPR–Cas systems: a burst of class 2 and derived variants (2019) (50)
Methanonatronarchaeum thermophilum gen. nov., sp. nov. and 'Candidatus Methanohalarchaeum thermophilum', extremely halo(natrono)philic methyl-reducing methanogens from hypersaline lakes comprising a new euryarchaeal class Methanonatronarchaeia classis nov. (2018) (47)
Orthologs of the small RPB8 subunit of the eukaryotic RNA polymerases are conserved in hyperthermophilic Crenarchaeota and "Korarchaeota" (2007) (46)
In Silico Metabolic Model and Protein Expression of Haemophilus influenzae Strain Rd KW20 in Rich Medium. (2004) (46)
Two new families of the FtsZ-tubulin protein superfamily implicated in membrane remodeling in diverse bacteria and archaea (2010) (46)
Compact RNA editors with small Cas13 proteins (2021) (46)
Phylogenomics of Cas4 family nucleases (2017) (45)
Machine-learning approach expands the repertoire of anti-CRISPR protein families (2020) (44)
A highly conserved family of inactivated archaeal B family DNA polymerases (2008) (44)
Multiple antimutagenesis mechanisms affect mutagenic activity and specificity of the base analog 6-N-hydroxylaminopurine in bacteria and yeast. (1998) (44)
Novel Bacteriophages Containing a Genome of Another Bacteriophage within Their Genomes (2012) (43)
On the Origin of Reverse Transcriptase-Using CRISPR-Cas Systems and Their Hyperdiverse, Enigmatic Spacer Repertoires (2017) (43)
Myosin-driven transport network in plants (2017) (43)
Evolutionary and functional classification of the CARF domain superfamily, key sensors in prokaryotic antivirus defense. (2020) (43)
Genomic analysis of PSU-1 and its relevance to winemaking (2005) (41)
ISC, a Novel Group of Bacterial and Archaeal DNA Transposons That Encode Cas9 Homologs (2015) (41)
A non-canonical multisubunit RNA polymerase encoded by a giant bacteriophage (2015) (40)
Specific Expansion of Protein Families in the Radioresistant Bacterium Deinococcus Radiodurans (2004) (39)
Antimicrobial Peptides, Polymorphic Toxins, and Self-Nonself Recognition Systems in Archaea: an Untapped Armory for Intermicrobial Conflicts (2019) (39)
Identification and Functional Verification of Archaeal-Type Phosphoenolpyruvate Carboxylase, a Missing Link in Archaeal Central Carbohydrate Metabolism (2004) (39)
Identification of an ortholog of the eukaryotic RNA polymerase III subunit RPC34 in Crenarchaeota and Thaumarchaeota suggests specialization of RNA polymerases for coding and non-coding RNAs in Archaea (2009) (38)
The complex domain architecture of SAMD9 family proteins, predicted STAND-like NTPases, suggests new links to inflammation and apoptosis (2017) (37)
Cyanobacterial response regulator PatA contains a conserved N-terminal domain (PATAN) with an alpha-helical insertion (2006) (37)
Filling a gap in the central metabolism of archaea: prediction of a novel aconitase by comparative-genomic analysis. (2003) (36)
Archaeology of eukaryotic DNA replication. (2013) (36)
DNA silencing by prokaryotic Argonaute proteins adds a new layer of defense against invading nucleic acids (2018) (36)
Phyletic Distribution and Lineage-Specific Domain Architectures of Archaeal Two-Component Signal Transduction Systems (2017) (36)
Reconstruction of the evolution of microbial defense systems (2017) (36)
Displacement of the canonical single-stranded DNA-binding protein in the Thermoproteales (2011) (35)
Babela massiliensis, a representative of a widespread bacterial phylum with unusual adaptations to parasitism in amoebae (2015) (35)
A novel method of protein sequence classification based on oligopeptide frequency analysis and its application to search for functional sites and to domain localization (1993) (35)
Prokaryotic innate immunity through pattern recognition of conserved viral proteins (2022) (33)
Two fundamentally different classes of microbial genes (2016) (32)
Recent Mobility of Casposons, Self-Synthesizing Transposons at the Origin of the CRISPR-Cas Immunity (2016) (32)
Archaeal Ubiquitin-Like Proteins: Functional Versatility and Putative Ancestral Involvement in tRNA Modification Revealed by Comparative Genomic Analysis (2010) (32)
Discovery of Oligonucleotide Signaling Mediated by CRISPR-Associated Polymerases Solves Two Puzzles but Leaves an Enigma. (2017) (30)
Integrated mobile genetic elements in Thaumarchaeota (2019) (30)
Archaeology of eukaryotic DNA replication. (2013) (29)
Escherichia coli ItaT is a type II toxin that inhibits translation by acetylating isoleucyl-tRNAIle (2018) (29)
Thermolysin and mitochondrial processing peptidase: How far structure—functional convergence goes (2008) (28)
The prokaryotic V4R domain is the likely ancestor of a key component of the eukaryotic vesicle transport system (2008) (27)
CRISPRidentify: identification of CRISPR arrays using machine learning approach (2020) (26)
Towards functional characterization of archaeal genomic dark matter (2019) (25)
Comparative genomics and evolution of trans-activating RNAs in Class 2 CRISPR-Cas systems (2018) (25)
Molecular dissection of arginyltransferases guided by similarity to bacterial peptidoglycan synthases (2006) (23)
Gene Duplication with Displacement and Rearrangement: Origin of the Bacterial Replication Protein PriB from the Single-Stranded DNA-Binding Protein Ssb (2003) (23)
Gene conversions in genes encoding outer-membrane proteins in H. pylori and C. pneumoniae. (2001) (23)
Structural and functional characterization of microcin C resistance peptidase MccF from Bacillus anthracis. (2012) (22)
Short repeats and IS elements in the extremely radiation-resistant bacterium Deinococcus radiodurans and comparison to other bacterial species. (1999) (22)
Functional curation of the Sulfolobus solfataricus P2 and S. acidocaldarius 98-3 complete genome sequences (2011) (21)
Host RNA polymerase inhibitors encoded by ϕKMV-like phages of Pseudomonas. (2013) (21)
Enzymatic Synthesis of Bioinformatically Predicted Microcin C-Like Compounds Encoded by Diverse Bacteria (2014) (20)
Evolutionary plasticity and functional versatility of CRISPR systems (2022) (20)
A primase subunit essential for efficient primer synthesis by an archaeal eukaryotic-type primase (2015) (20)
Response to Comment on “RNA-guided DNA insertion with CRISPR-associated transposases” (2020) (19)
Evolution of plant δ1-pyrroline-5-carboxylate reductases from phylogenetic and structural perspectives (2015) (19)
A Reverse Transcriptase-Cas1 Fusion Protein Contains a Cas6 Domain Required for Both CRISPR RNA Biogenesis and RNA Spacer Acquisition. (2018) (18)
Evolution of Microbial Genomics: Conceptual Shifts over a Quarter Century. (2021) (18)
Anti-CRISPRs on the march (2018) (17)
Comparative Genomics of Stress Response Systems in Deinococcus Bacteria (2011) (17)
Systematic prediction of functionally linked genes in bacterial and archaeal genomes (2019) (16)
Evolution of Genome Architecture in Archaea: Spontaneous Generation of a New Chromosome in Haloferax volcanii (2018) (16)
Structure and function of virion RNA polymerase of a crAss-like phage (2020) (15)
Early vertebrate origin and diversification of small transmembrane regulators of cellular ion transport (2017) (13)
Structural Basis for a Dual Function ATP Grasp Ligase That Installs Single and Bicyclic ω-Ester Macrocycles in a New Multicore RiPP Natural Product. (2021) (13)
Unexpected connections between type VI-B CRISPR-Cas systems, bacterial natural competence, ubiquitin signaling network and DNA modification through a distinct family of membrane proteins. (2019) (13)
Unprecedented Diversity of Unique CRISPR-Cas-Related Systems and Cas1 Homologs in Asgard Archaea. (2020) (13)
Structure and function of virion RNA polymerase of a crAss-like phage (2020) (13)
CRISPR Arrays Away from cas Genes. (2020) (12)
A putative RNA-interference-based immune system in prokaryotes: The epitome of prokaryotic genomic diversity (2006) (12)
Cellular homologs of the double jelly-roll major capsid proteins clarify the origins of an ancient virus kingdom (2022) (11)
Identification of Dephospho-Coenzyme A (Dephospho-CoA) Kinase in Thermococcus kodakarensis and Elucidation of the Entire CoA Biosynthesis Pathway in Archaea (2019) (11)
Proposed Role for KaiC-Like ATPases as Major Signal Transduction Hubs in Archaea (2017) (11)
Comparative genomic analysis of evolutionarily conserved but functionally uncharacterized membrane proteins in archaea: Prediction of novel components of secretion, membrane remodeling and glycosylation systems (2015) (11)
Horizontal Gene Transfer and its Role in the Evolution of Prokaryotes (2002) (11)
Extreme Deviations from Expected Evolutionary Rates in Archaeal Protein Families (2017) (10)
Francisella RNA polymerase contains a heterodimer of non-identical α subunits (2011) (9)
High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460 (2017) (9)
Evolution of Type IV CRISPR-Cas Systems: Insights from CRISPR Loci in Integrative Conjugative Elements of Acidithiobacillia. (2021) (9)
RNA-triggered protein cleavage and cell growth arrest by the type III-E CRISPR nuclease-protease (2022) (9)
Evolution and Classification of CRISPR-Cas Systems and Cas Protein Families (2013) (9)
Predicted highly derived class 1 CRISPR-Cas system in Haloarchaea containing diverged Cas5 and Cas7 homologs but no CRISPR array. (2019) (9)
Evolution of eukaryotic gene repertoire and gene structure: discovering the unexpected dynamics of genome evolution. (2003) (8)
The CRISPR spacer space is dominated by sequences from the species-specific mobilome (2017) (8)
DIROM: an experimental design interactive system for directed mutagenesis and nucleic acids engineering (1992) (7)
Vast diversity of anti-CRISPR proteins predicted with a machine-learning approach (2020) (6)
CRISPRclassify: Repeat-Based Classification of CRISPR Loci. (2021) (6)
Proteomic Analysis of Methanonatronarchaeum thermophilum AMET1, a Representative of a Putative New Class of Euryarchaeota, “Methanonatronarchaeia” (2018) (5)
Expanding diversity of Asgard archaea and the elusive ancestry of eukaryotes (2020) (5)
[Gene Nc73EF of Drosophila melanogaster encodes a protein highly homologous to E1 subunit of human 2-oxoglutarate dehydrogenase]. (1998) (5)
The miniature CRISPR-Cas12m effector binds DNA to block transcription. (2022) (4)
[Multiple alignment of biopolymer sequences, based on the search for statistically significant common segments]. (1995) (4)
The tRNA discriminator base defines the mutual orthogonality of two distinct pyrrolysyl-tRNA synthetase/tRNAPyl pairs in the same organism (2022) (4)
Reply to ‘Evolutionary placement of Methanonatronarchaeia’ (2019) (4)
Casposons: a new superfamily of self-synthesizing DNA transposons at the origin of prokaryotic CRISPR-Cas immunity (2014) (3)
Response of the thermoacidophilic Archaeon Sulfolobus acidocaldarius to solvent stress exemplified by 1-butanol exposure. (2021) (3)
RNA-triggered protein cleavage and cell death by the RNA-guided type III-E CRISPR-Cas nuclease-protease complex (2022) (3)
A family of novel immune systems targets early infection of nucleus-forming jumbo phages (2022) (3)
Small-Molecule Mn Antioxidants in Caenorhabditis elegans and Deinococcus radiodurans Supplant MnSOD Enzymes during Aging and Irradiation (2022) (3)
Recurrent intragenomic recombination leading to sequence homogenization during the evolution of the lipoyl-binding domain. (2002) (2)
Publisher Correction: Anti-CRISPR proteins encoded by archaeal lytic viruses inhibit subtype I-D immunity (2018) (2)
Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis (2022) (2)
Towards comprehensive characterization of CRISPR-linked genes (2018) (2)
tRNA anticodon cleavage by target-activated CRISPR-Cas13a effector (2021) (2)
[A small open reading frame of the Stalker retrotransposon reveals a high similarity to the second small frame of the MDG1 retrotransposon]. (1997) (2)
Comparative analysis of lipid biosynthesis in archaea, bacteria and eukaryotes: What was the structure of the first membrane lipids? (2012) (2)
The CMG (CDC45/RecJ, MCM, GINS) complex is a conserved component of the DNA replication system in all archaea and eukaryotes (2012) (1)
Insights into archaeal evolution and symbiosis from the genomes of a nanoarchaeon and its inferred crenarchaeal host from Obsidian Pool, Yellowstone National Park (2013) (1)
Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions (2022) (1)
Defense Against Viruses and Other Genetic Parasites in Prokaryotes (2019) (1)
Origin and Evolution of Photosynthesis: Clues from Genome Comparison (2008) (1)
In silico approaches for prediction of anti-CRISPR proteins. (2023) (1)
Structure of the OMEGA nickase IsrB in complex with ωRNA and target DNA (2022) (1)
KaiC-like ATPases as Signal Transduction Hubs in Archaea (2017) (1)
The bone-degrading enzyme machinery: From multi-component understanding to the treatment of residues from the meat industry (2021) (1)
Exposure to 1-Butanol Exemplifies the Response of the Thermoacidophilic Archaeon Sulfolobus acidocaldarius to Solvent Stress (2021) (1)
SURVEY AND SUMMARY Classification and evolution of type II CRISPR-Cas systems (2014) (1)
The evolution of microbial defense systems (2021) (1)
Compensatory relationship between low-complexity regions and gene paralogy in the evolution of prokaryotes (2022) (1)
A Unique Gene Module in Thermococcales Archaea Centered on a Hypervariable Protein Containing Immunoglobulin Domains (2021) (1)
CRISPR‐Cas Systems and Cas Protein Families (2013) (1)
Crystal structure of the SIRV3 AcrID1 (gp02) anti-CRISPR protein (2018) (1)
Live virus-free or die: coupling of antivirus immunity and programmed suicide or dormancy in prokaryotes (2012) (1)
Table 9, Examples of eukaryotic-prokaryotic transfer of functionally diverse genes (2002) (0)
Reply to ‘Evolutionary placement of Methanonatronarchaeia’ (2019) (0)
Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing (2013) (0)
A Reverse Transcriptase-C as 1 Fusion Protein Contains a Cas 6 Domain Required for Both CRISPR RNA Biogenesis and RNA Spacer Acquisition Graphical (2018) (0)
Identiﬁcation and functional analysis of ‘hypothetical’ genes expressed in Haemophilus inﬂuenzae (2004) (0)
Tail-tape-fused virion and non-virion RNA polymerases of a thermophilic virus with an extremely long tail (2022) (0)
Sequence Similarity Significance: Computer Simulations and Analytically obtained Bounds (1996) (0)
Reconstruction of the evolution of microbial defense systems (2017) (0)
Table 1, Examples of probable horizontal gene transfers identified using phyletic patterns in COGs a (2002) (0)
The rhomboids: a near ubiquitous family of intramembrane serine proteases evolved via multiple horizontal gene transfers (2002) (0)
Babela massiliensis, a representative of a widespread bacterial phylum with unusual adaptations to parasitism in amoebae (2015) (0)
Widespread CRISPR repeat-like RNA regulatory elements in CRISPR-Cas systems (2023) (0)
Engineering of CRISPR-Cas12b for human genome editing (2019) (0)
SURVEY AND SUMMARY Evolutionary and functional classiﬁcation of the CARF domain superfamily, key sensors in prokaryotic antivirus defense (2020) (0)
[Comparison of the synonymous and non-synonymous substitution rates in various regions of the neuraminidase and hemagglutinin genes of the influenza A virus]. (1998) (0)
Table 3, Candidate horizontal transfers between bacteria, archaea, and eukaryotes: a quantitative assessment a (2002) (0)
Clostridium acetobutylicum Bacterium Analysis of the Solvent-Producing Genome Sequence and Comparative (2001) (0)
Replication Replication Proteins and Human Disease (2012) (0)
DOE-NABIR WORKSHOP: Abstracts (2000) (0)
Phylogenomics of Cas4 family nucleases (2017) (0)
Phylogenomic analysis of the diversity of graspetides and proteins involved in their biosynthesis (2022) (0)
Table 5, Classification of candidate horizontal gene transfer events in selected genomes a (2002) (0)
The complex domain architecture of SAMD9 family proteins, predicted STAND-like NTPases, suggests new links to inflammation and apoptosis (2017) (0)
Genome of the Extremely Radiation-Resistant Bacterium <italic toggle='yes'>Deinococcus radiodurans</italic> Viewed from the Perspective of Comparative Genomics (2001) (0)
High-quality genome sequence of the radioresistant bacterium Deinococcus ficus KS 0460 (2017) (0)
Table 7, Examples of eukaryotic-bacterial transfer of genes coding for proteins and domains involved in signal transduction a (2002) (0)
A hypothetical scenario for the origin and dissemination of the rhomboid family proteases (2011) (0)
Table 2, Examples of horizontally transferred operons (2002) (0)
Publisher Correction: Anti-CRISPR proteins encoded by archaeal lytic viruses inhibit subtype I-D immunity (2018) (0)
Figure 1, [Distribution of the clusters of...]. (2002) (0)
Subject Index Vol. 5, 2003 (2003) (0)
Human Papillomavirus Infections : Warts or (2013) (0)
[Evolution modes of eukaryote retrotransposons]. (1996) (0)
Anti-CRISPR proteins encoded by archaeal lytic viruses inhibit subtype I-D immunity (2018) (0)
["DIROM"--an interactive system for planning experiments on directed mutagenesis and design of artificial genes]. (1992) (0)
[Evolution of gypsy-group retrotransposons: phylogenetic analysis of domains included in the pol-polyprotein]. (1995) (0)
Cellular differentiation into hyphae and spores in halophilic archaea (2023) (0)
Assessment of complications of combined modality radiotherapy in patients with prostate cancer using conventionally and non-conventionally fractionated doses (2020) (0)
Figure 2, [Phylogenetic trees illustrating xenologous gene...]. (2002) (0)
[Different patterns of molecular evolution of influenza A viruses in avian and human population]. (1998) (0)
‘ARMAN’ archaea depend on association with euryarchaeal host in culture and in situ (2017) (0)
THE ROLE OF IRON IN Deinococcus radiodurans ENGINEERED FOR GROWTH ON TOLUENE AND THE ROLE OF MANGANESE IN THE EXTREME RADIATION RESISTANCE PHENOTYPE (2004) (0)
Parallelized screening of virus accessory genes reveals diverse defense and counter-defense mechanisms (2023) (0)
[Search for functional domain boundaries and localization of functional sites based on oligopeptide vocabularies]. (1992) (0)
Widespread PRC barrel proteins play critical roles in archaeal cell division (2023) (0)
Updated clusters of orthologous genes for Archaea: a complex ancestor of the Archaea and the byways of horizontal gene transfer (2012) (0)
Taxonomic affinities of ArCOGs with bacteria and eukaryotes (2011) (0)
Contents Vol. 5, 2003 (2003) (0)
Dark matter in archaeal genomes: a rich source of novel mobile elements, defense systems and secretory complexes (2014) (0)
CRISPR–Cas in mobile genetic elements: counter-defence and beyond (2019) (0)
Table 6, Apparent phylogenetic affinities of eukaryotic best hits in bacteria and archaea (2002) (0)
Author Correction: Programmable RNA targeting with the single-protein CRISPR effector Cas7-11 (2022) (0)
Correspondence between eukaryotic and prokaryotic orthologous gene sets (2011) (0)
Evolutionary entanglement of mobile genetic elements and host defence systems: guns for hire (2019) (0)
New methodologies in analyzing spectral line shapes from ESRspectroscopy in membrane protein systems: targeting the V-ATPase (2006) (0)
Analysis of lineage-specific protein family variability in prokaryotes combined with evolutionary reconstructions (2022) (0)
Crystal Structure of the Cas6 Domain of Marinomonas mediterranea MMB-1 Cas6-RT-Cas1 Fusion Protein (2018) (0)
Author Correction: Programmable RNA targeting with the single-protein CRISPR effector Cas7-11 (2022) (0)
Functional breakdown of genes in each of the sequenced archaeal genomes (2011) (0)
THE ROLE OF BILE ACIDS IN THE DISEASES OF BILIARY SYSTEM (2013) (0)
PO-0251 clinical outcomes of radiation therapy for high-risk prostate cancer (2021) (0)
Table 8, Horizontal transfer of eukaryotic aaRS genes into different bacterial lineages a (2002) (0)
Table 4, Candidate horizontal gene transfers between major bacterial lineages: a quantitative assessment a (2002) (0)
C1/2 Energetics of the first bacteria as inferred from genome analysis (2008) (0)

This paper list is powered by the following services:

Other Resources About Kira Makarova

en.wikipedia.org

What Schools Are Affiliated With Kira Makarova?

Kira Makarova is affiliated with the following schools: