Lars Juhl Jensen
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Danish computational biologist
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Lars Juhl Jensenbiology Degrees
Biology
#5364
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#7825
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Bioinformatics
#54
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#55
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Computational Biology
#80
World Rank
#80
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Biology
Lars Juhl Jensen's Degrees
- PhD Bioinformatics Technical University of Denmark
- Masters Chemical Engineering Technical University of Denmark
Why Is Lars Juhl Jensen Influential?
(Suggest an Edit or Addition)Lars Juhl Jensen's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- STRING v11: protein–protein association networks with increased coverage, supporting functional discovery in genome-wide experimental datasets (2018) (9523)
- STRING v10: protein–protein interaction networks, integrated over the tree of life (2014) (8096)
- The STRING database in 2017: quality-controlled protein–protein association networks, made broadly accessible (2016) (5417)
- STRING v9.1: protein-protein interaction networks, with increased coverage and integration (2012) (3879)
- The STRING database in 2011: functional interaction networks of proteins, globally integrated and scored (2010) (3277)
- Proteome survey reveals modularity of the yeast cell machinery (2006) (2642)
- STRING 8—a global view on proteins and their functional interactions in 630 organisms (2008) (2396)
- The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets (2020) (2365)
- eggNOG 4.5: a hierarchical orthology framework with improved functional annotations for eukaryotic, prokaryotic and viral sequences (2015) (1590)
- Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper (2016) (1585)
- eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses (2018) (1563)
- STRING: known and predicted protein–protein associations, integrated and transferred across organisms (2004) (1427)
- Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis (2010) (1425)
- Mining electronic health records: towards better research applications and clinical care (2012) (1356)
- Protein disorder prediction: implications for structural proteomics. (2003) (1197)
- Drug Target Identification Using Side-Effect Similarity (2008) (1120)
- Feature-based prediction of non-classical and leaderless protein secretion. (2004) (1073)
- STITCH 5: augmenting protein–chemical interaction networks with tissue and affinity data (2015) (895)
- Cytoscape StringApp: Network Analysis and Visualization of Proteomics Data. (2018) (875)
- The SIDER database of drugs and side effects (2015) (824)
- A side effect resource to capture phenotypic effects of drugs (2010) (819)
- Systematic Discovery of In Vivo Phosphorylation Networks (2007) (747)
- Recalibrating Equus evolution using the genome sequence of an early Middle Pleistocene horse (2013) (706)
- Literature mining for the biologist: from information retrieval to biological discovery (2006) (695)
- STRING 7—recent developments in the integration and prediction of protein interactions (2006) (673)
- STITCH: interaction networks of chemicals and proteins (2007) (651)
- A new non-linear normalization method for reducing variability in DNA microarray experiments (2002) (570)
- SuperTarget and Matador: resources for exploring drug-target relationships (2007) (537)
- eggNOG v3.0: orthologous groups covering 1133 organisms at 41 different taxonomic ranges (2011) (502)
- eggNOG v4.0: nested orthology inference across 3686 organisms (2013) (487)
- eggNOG: automated construction and annotation of orthologous groups of genes (2007) (450)
- Linear Motif Atlas for Phosphorylation-Dependent Signaling (2008) (442)
- DISEASES: text mining and data integration of disease-gene associations. (2015) (440)
- COMPARTMENTS: unification and visualization of protein subcellular localization evidence (2014) (438)
- Dynamic Complex Formation During the Yeast Cell Cycle (2005) (407)
- Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments (2007) (366)
- STITCH 4: integration of protein–chemical interactions with user data (2013) (364)
- Protein interaction networks from yeast to human. (2004) (360)
- Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation* (2015) (326)
- NetworKIN: a resource for exploring cellular phosphorylation networks (2007) (315)
- Mass Spectrometric Analysis of Lysine Ubiquitylation Reveals Promiscuity at Site Level* (2010) (313)
- Phospho.ELM: a database of phosphorylation sites—update 2011 (2010) (310)
- Temporal disease trajectories condensed from population-wide registry data covering 6.2 million patients (2014) (301)
- Using Electronic Patient Records to Discover Disease Correlations and Stratify Patient Cohorts (2011) (299)
- STITCH 3: zooming in on protein–chemical interactions (2011) (289)
- KinomeXplorer: an integrated platform for kinome biology studies (2014) (281)
- Prediction of human protein function according to Gene Ontology categories (2003) (266)
- A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development. (2006) (253)
- eggNOG v2.0: extending the evolutionary genealogy of genes with enhanced non-supervised orthologous groups, species and functional annotations (2009) (247)
- Proteome-Wide Mapping of the Drosophila Acetylome Demonstrates a High Degree of Conservation of Lysine Acetylation (2011) (245)
- Site-specific mapping of the human SUMO proteome reveals co-modification with phosphorylation (2017) (244)
- Unexplored therapeutic opportunities in the human genome (2018) (238)
- A DNA structural atlas for Escherichia coli. (2000) (237)
- STITCH 2: an interaction network database for small molecules and proteins (2009) (225)
- Acetylation site specificities of lysine deacetylase inhibitors in human cells (2015) (221)
- Comparison of computational methods for the identification of cell cycle-regulated genes (2005) (217)
- Proteome-wide analysis of arginine monomethylation reveals widespread occurrence in human cells (2016) (210)
- Co-evolution of transcriptional and post-translational cell-cycle regulation (2006) (204)
- Pharos: Collating protein information to shed light on the druggable genome (2016) (202)
- A Nondegenerate Code of Deleterious Variants in Mendelian Loci Contributes to Complex Disease Risk (2013) (197)
- On the total number of genes and their length distribution in complete microbial genomes. (2001) (194)
- Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs (2004) (193)
- Treatment of abdominal aortic aneurysm in nine countries 2005-2009: a vascunet report. (2011) (193)
- Quantifying environmental adaptation of metabolic pathways in metagenomics (2009) (191)
- Proteomic analysis of a pleistocene mammoth femur reveals more than one hundred ancient bone proteins. (2012) (188)
- Cyclebase 3.0: a multi-organism database on cell-cycle regulation and phenotypes (2014) (187)
- Standardized benchmarking in the quest for orthologs (2016) (184)
- Cytoscape stringApp: Network analysis and visualization of proteomics data (2018) (178)
- Toward molecular trait-based ecology through integration of biogeochemical, geographical and metagenomic data (2011) (178)
- Specific CLK Inhibitors from a Novel Chemotype for Regulation of Alternative Splicing (2011) (175)
- Systematic Association of Genes to Phenotypes by Genome and Literature Mining (2005) (172)
- Protein-driven inference of miRNA–disease associations (2013) (171)
- Extraction of regulatory gene/protein networks from Medline (2006) (167)
- In Vivo Phosphoproteomics Analysis Reveals the Cardiac Targets of β-Adrenergic Receptor Signaling (2013) (158)
- Pre-Clovis Mastodon Hunting 13,800 Years Ago at the Manis Site, Washington (2011) (152)
- A systematic screen for protein–lipid interactions in Saccharomyces cerevisiae (2010) (150)
- The SPECIES and ORGANISMS Resources for Fast and Accurate Identification of Taxonomic Names in Text (2013) (147)
- Drug-Induced Regulation of Target Expression (2010) (132)
- Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation (2000) (124)
- TISSUES 2.0: an integrative web resource on mammalian tissue expression (2018) (121)
- Genes adopt non-optimal codon usage to generate cell cycle-dependent oscillations in protein levels (2012) (120)
- A comprehensive and quantitative comparison of text-mining in 15 million full-text articles versus their corresponding abstracts (2018) (119)
- Improved metagenome binning and assembly using deep variational autoencoders (2021) (116)
- Origin of replication in circular prokaryotic chromosomes. (2006) (115)
- Identification of Novel Type 1 Diabetes Candidate Genes by Integrating Genome-Wide Association Data, Protein-Protein Interactions, and Human Pancreatic Islet Gene Expression (2012) (113)
- High-resolution transcription atlas of the mitotic cell cycle in budding yeast (2010) (110)
- Text mining for biology - the way forward: opinions from leading scientists (2008) (109)
- Year : 2013 STRING v 9 . 1 : protein-protein interaction networks , with increased coverage and integration (2017) (108)
- Systematic identification of proteins that elicit drug side effects (2013) (108)
- Reflect: augmented browsing for the life scientist (2009) (107)
- Site-specific characterization of endogenous SUMOylation across species and organs (2018) (99)
- Correction to ‘The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets’ (2021) (98)
- BioStar: An Online Question & Answer Resource for the Bioinformatics Community (2011) (97)
- Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima. (2000) (95)
- RAIN: RNA–protein Association and Interaction Networks (2017) (94)
- Viruses.STRING: A Virus-Host Protein-Protein Interaction Database (2018) (92)
- Large‐scale prediction of drug–target relationships (2008) (87)
- Comprehensive comparison of large-scale tissue expression datasets (2015) (86)
- Spore number control and breeding in Saccharomyces cerevisiae (2005) (85)
- Systems-wide Analysis of Serine ADP-Ribosylation Reveals Widespread Occurrence and Site-Specific Overlap with Phosphorylation. (2018) (85)
- Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis (2007) (84)
- Overview of the interactive task in BioCreative V (2015) (83)
- Are graph databases ready for bioinformatics? (2013) (82)
- Quantitative assessment of protein function prediction from metagenomics shotgun sequences (2007) (82)
- SVD-phy: improved prediction of protein functional associations through singular value decomposition of phylogenetic profiles (2015) (80)
- Assessing Systems Properties of Yeast Mitochondria through an Interaction Map of the Organelle (2006) (80)
- Three views of microbial genomes. (1999) (77)
- Endograft limb occlusion in EVAR: iliac tortuosity quantified by three different indices on the basis of preoperative CTA. (2014) (77)
- Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer (2017) (76)
- Dictionary construction and identification of possible adverse drug events in Danish clinical narrative text (2013) (76)
- Variation in clinical practice in carotid surgery in nine countries 2005-2010. Lessons from VASCUNET and recommendations for the future of national clinical audit. (2012) (76)
- Proteomic Analysis of Arginine Methylation Sites in Human Cells Reveals Dynamic Regulation During Transcriptional Arrest* (2014) (72)
- A Comparison of Protein Kinases Inhibitor Screening Methods Using Both Enzymatic Activity and Binding Affinity Determination (2014) (69)
- Identification and analysis of evolutionarily cohesive functional modules in protein networks. (2006) (68)
- Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation (2015) (68)
- Accurate Quantification of Site-specific Acetylation Stoichiometry Reveals the Impact of Sirtuin Deacetylase CobB on the E. coli Acetylome* (2017) (67)
- Accuracy of clinical data in a population based vascular registry. (2004) (67)
- Cyclebase.org—a comprehensive multi-organism online database of cell-cycle experiments (2007) (65)
- TCRD and Pharos 2021: mining the human proteome for disease biology (2020) (61)
- Palaeoproteomic Profiling of Conservation Layers on a 14th Century Italian Wall Painting (2018) (59)
- Mortality and complications after aortic bifurcated bypass procedures for chronic aortoiliac occlusive disease. (2015) (59)
- Sequence-based feature prediction and annotation of proteins (2009) (59)
- Postthrombotic syndrome and quality of life in patients with iliofemoral venous thrombosis treated with catheter-directed thrombolysis. (2011) (58)
- Ontologies in Quantitative Biology: A Basis for Comparison, Integration, and Discovery (2010) (57)
- Cyclebase.org: version 2.0, an updated comprehensive, multi-species repository of cell cycle experiments and derived analysis results (2009) (56)
- Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow. (2015) (56)
- Metaproteomics of saliva identifies human protein markers specific for individuals with periodontitis and dental caries compared to orally healthy controls (2016) (54)
- Synthesis, rearrangements, and fragmentation of ketene mercaptals derived from ketones or β-diketones and carbon disulphide (1974) (54)
- Not Comparable, But Complementary (2008) (54)
- Cell cycle regulation by feed-forward loops coupling transcription and phosphorylation (2009) (52)
- Avoiding abundance bias in the functional annotation of posttranslationally modified proteins (2015) (51)
- Drug target ontology to classify and integrate drug discovery data (2017) (51)
- Quantitative metaproteomics of medieval dental calculus reveals individual oral health status (2018) (50)
- Outcome following carotid endarterectomy: lessons learned from a large international vascular registry. (2011) (49)
- miRandola 2017: a curated knowledge base of non-invasive biomarkers (2017) (48)
- LocText: relation extraction of protein localizations to assist database curation (2018) (47)
- Predicting biological networks from genomic data (2008) (47)
- Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites (2019) (46)
- Femoral pseudoaneurysms in drug addicts. (1995) (45)
- Protein-protein interaction databases. (2015) (45)
- Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population (2014) (44)
- Natural history of abdominal aortic aneurysm: A survey of 63 patients treated nonoperatively (1993) (44)
- Unexplored therapeutic opportunities in the human genome (2018) (44)
- International variations in infrainguinal bypass surgery - a VASCUNET report. (2012) (43)
- A knowledge graph to interpret clinical proteomics data (2022) (42)
- Visualize omics data on networks with Omics Visualizer, a Cytoscape App (2020) (42)
- Improved priming for mobilization of and optimal timing for harvest of peripheral blood stem cells. (1996) (40)
- Prediction of novel archaeal enzymes from sequence‐derived features (2002) (40)
- Reduced bone marrow stem cell pool and progenitor mobilisation in multiple myeloma after melphalan treatment (1999) (40)
- The rise and fall of supervised machine learning techniques (2011) (40)
- Circulating clonal cells in multiple myeloma do not express CD34 mRNA, as measured by single‐cell and real‐time RT‐PCR assays (1999) (39)
- Increased yield of myeloid progenitor cells in bone marrow harvested for autologous transplantation by pretreatment with recombinant human granulocyte-colony stimulating factor. (1992) (39)
- Functionality of system components: conservation of protein function in protein feature space. (2003) (39)
- Extraction of Transcript Diversity from Scientific Literature (2005) (39)
- EXTRACT: interactive extraction of environment metadata and term suggestion for metagenomic sample annotation (2016) (38)
- The STRING database in 2023: protein–protein association networks and functional enrichment analyses for any sequenced genome of interest (2022) (38)
- Suppression of Water as a Nucleophile in Candida antarctica Lipase B Catalysis (2010) (36)
- DistiLD Database: diseases and traits in linkage disequilibrium blocks (2011) (35)
- Acute iliofemoral venous thrombosis in patients with atresia of the inferior vena cava can be treated successfully with catheter-directed thrombolysis. (2011) (34)
- Clinical Knowledge Graph Integrates Proteomics Data into Clinical Decision-Making (2020) (34)
- ArrayProspector: a web resource of functional associations inferred from microarray expression data (2004) (33)
- The importance of complete follow-up for results after femoro-infrapopliteal vascular surgery. (1996) (33)
- TIMP-1 increases expression and phosphorylation of proteins associated with drug resistance in breast cancer cells. (2013) (33)
- A comparative study of sequential priming and mobilisation of progenitor cells with rhG-CSF alone and high-dose cyclophosphamide plus rhG-CSF (2000) (33)
- Subsets of CD34+ hematopoietic progenitors and platelet recovery after high dose chemotherapy and peripheral blood stem cell transplantation. (1999) (33)
- Protein feature based identification of cell cycle regulated proteins in yeast. (2003) (32)
- Frequency and kinetics of polyclonal and clonal B cells in the peripheral blood of patients being treated for multiple myeloma. (2000) (32)
- Extracting Regulatory Gene Expression Networks From Pubmed (2004) (31)
- Evolution of Cell Cycle Control: Same Molecular Machines, Different Regulation (2007) (31)
- Specifying RNA-Binding Regions in Proteins by Peptide Cross-Linking and Affinity Purification. (2017) (31)
- Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families. (2008) (30)
- Seqenv: linking sequences to environments through text mining (2016) (29)
- Short-term in vivo priming of bone marrow haematopoiesis with rhG-CSF, rhGM-CSF or rhIL-3 before marrow harvest expands myelopoiesis but does not improve engraftment capability. (1995) (28)
- Martini: using literature keywords to compare gene sets (2009) (27)
- Evaluation of mobilized CD34+ cell counts to guide timing and yield of large-scale collection by leukapheresis. (1998) (27)
- Analysis of Predicted Host–Parasite Interactomes Reveals Commonalities and Specificities Related to Parasitic Lifestyle and Tissues Tropism (2019) (26)
- Darkness in the Human Gene and Protein Function Space: Widely Modest or Absent Illumination by the Life Science Literature and the Trend for Fewer Protein Function Discoveries Since 2000 (2018) (25)
- The Clonal Hierachy in Multiple Myeloma (2000) (24)
- Large-scale extraction of gene regulation for model organisms in an ontological context (2004) (23)
- Outcomes after elective aortic aneurysm repair: a nationwide Danish cohort study 2007-2010. (2013) (23)
- Homology-directed repair protects the replicating genome from metabolic assaults. (2021) (23)
- Microblogging the ISMB: A New Approach to Conference Reporting (2009) (22)
- Levels of circulating CD19+ cells in patients with multiple myeloma. (2000) (22)
- Reducing Delay of Carotid Endarterectomy in Acute Ischemic Stroke Patients: A Nationwide Initiative (2013) (22)
- Carotid endarterectomy after intravenous thrombolysis for acute cerebral ischaemic attack: is it safe? (2013) (21)
- Selective loss of progenitor subsets following clinical CD34+ cell enrichment by magnetic field, magnetic beads or chromatography separation (1999) (21)
- Vascular registries join to create a common international dataset on AAA surgery. (2007) (21)
- Discrepancies in listed adverse drug reactions in pharmaceutical product information supplied by the regulatory authorities in Denmark and the USA (2014) (21)
- Vascular registers in Denmark based on personal computers. (1992) (21)
- Human pathways in animal models: possibilities and limitations (2021) (21)
- Text mining of 15 million full-text scientific articles (2017) (19)
- Comparing 22 popular phosphoproteomics pipelines for peptide identification and site localization. (2020) (19)
- Quality Improvement in Vascular Surgery: The Role of Comparative Audit and Vascunet. (2015) (19)
- In situ saphenous vein bypass surgery in diabetic patients. (1992) (19)
- Editor's choice - Safety of carotid endarterectomy after intravenous thrombolysis for acute ischaemic stroke: a case-controlled multicentre registry study. (2014) (19)
- Inferring disease-associated long non-coding RNAs using genome-wide tissue expression profiles (2018) (18)
- Reactions of β-ketoesters and nitriles with carbon disulphide (1974) (18)
- TIN-X: target importance and novelty explorer (2017) (18)
- Reflect: A practical approach to web semantics (2010) (18)
- Priming with recombinant human hematopoietic cytokines before bone marrow harvest expands in vivo and enhances ex vivo recovery of myeloid progenitors in short-term liquid cultures. (1994) (17)
- ENVIRONMENTS and EOL: identification of Environment Ontology terms in text and the annotation of the Encyclopedia of Life (2014) (17)
- Comparative Genomics of Four Pseudomonas Species (2004) (17)
- Multiple independent analyses reveal only transcription factors as an enriched functional class associated with microRNAs (2012) (17)
- Prolonged multifocal electroretinographic implicit times in the ocular ischemic syndrome. (2010) (16)
- DISEASES: Text mining and data integration of disease–gene associations (2014) (16)
- CoCoScore: context-aware co-occurrence scoring for text mining applications using distant supervision (2018) (16)
- Risk Factors for Complications after Peripheral Vascular Surgery in 3,202 Patient Procedures. (2016) (16)
- From Phosphosites to Kinases. (2016) (16)
- WebCircRNA: Classifying the Circular RNA Potential of Coding and Noncoding RNA (2018) (16)
- A Guide to Dictionary-Based Text Mining. (2019) (16)
- A dictionary- and rule-based system for identification of bacteria and habitats in text (2016) (15)
- Cone pathway function in relation to asymmetric carotid artery stenosis: correlation to blood pressure (2013) (15)
- Transcriptional Regulation Is a Major Controller of Cell Cycle Transition Dynamics (2012) (15)
- Ten Simple Rules for Getting Help from Online Scientific Communities (2011) (15)
- Competing simple cleavage reactions: the elimination of alkyl radicals from amine radical cations. (2005) (15)
- Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome (2003) (15)
- The Atlas visualization of genomewide information (2002) (14)
- Hepatic Oxidative Stress, Genotoxicity and Vascular Dysfunction in Lean or Obese Zucker Rats (2015) (14)
- Editorial: Vascular Registries – are they Worth the Effort? (2000) (14)
- The CD19 Compartment in Myeloma Includes a Population of Clonal Cells Persistent After High-dose Treatment (2002) (13)
- Genome-wide identification of clusters of predicted microRNA binding sites as microRNA sponge candidates (2018) (13)
- The first Vascunet report on abdominal aortic aneurysm surgery : The European Society of Vascular Surgery (2007) (13)
- Treatment of chronic upper limb ischaemia is safe and results are good. (2014) (13)
- Priming and treatment with molgramostim (rhGM‐CSF) in adult high‐risk acute myeloid leukemia during induction chemotherapy: a prospective, randomized pilot study (1995) (12)
- Structure‐based discovery of novel US28 small molecule ligands with different modes of action (2017) (12)
- Comparison of rhG–CSF primed bone marrow and blood stem cell autografts: an analysis of engraftment in malignant lymphomas and solid tumours (1998) (11)
- The effect of arteriovenous fistulas on in situ saphenous vein bypasses (1991) (11)
- Visualization of Pathogenicity Regions in Bacteria (2004) (11)
- Large-scale Extraction of Protein/Gene Relations for Model Organisms (2005) (10)
- ProtFus: A Comprehensive Method Characterizing Protein-Protein Interactions of Fusion Proteins (2019) (10)
- Intra‐arterial papaverine and leg vascular resistance during in situ bypass surgery with high or low epidural anaesthesia (1993) (10)
- Impact of microRNA-130a on the neutrophil proteome (2015) (10)
- Diseases 2.0: a weekly updated database of disease–gene associations from text mining and data integration (2021) (10)
- OnTheFly2.0: a text-mining web application for automated biomedical entity recognition, document annotation, network and functional enrichment analysis (2021) (10)
- Secondary medical prevention after primary vascular surgery between 1996 and 2006: a shift towards more evidence-based treatment (2013) (9)
- Transcriptome analysis in patients with temporal lobe epilepsy. (2019) (9)
- Short-term rhG-CSF priming before chemotherapy does mobilize blood progenitors but does not prevent chemotherapy induced myelotoxicity: a randomized study of patients with non-Hodgkin's lymphomas. (1995) (9)
- PREGO: A Literature and Data-Mining Resource to Associate Microorganisms, Biological Processes, and Environment Types (2022) (9)
- Alcoholic liver disease: A registry view on comorbidities and disease prediction (2020) (9)
- Early vein bypass thrombectomy is associated with an increased risk of graft related stenoses. (1997) (9)
- Beta-blocker use and clinical outcomes after primary vascular surgery: a nationwide propensity score-matched study. (2013) (9)
- Design, implementation, and operation of a rapid, robust named entity recognition web service (2019) (9)
- TISSUES 2.0: an integrative web resource on mammalian tissue expression (2018) (8)
- A Study of Donor Alloreactivity, which may predict Acute Graft‐Versus‐Host Disease in HLA Identical Bone Marrow Transplantations for Early Leukaemia (1992) (8)
- Identification of possible adverse drug reactions in clinical notes: The case of glucose-lowering medicines (2015) (8)
- Retinal angiographic blood flowmetry is reduced in the ocular ischaemic syndrome. (2013) (8)
- eggNOG 6.0: enabling comparative genomics across 12 535 organisms (2022) (8)
- Quantitative proteome comparison of human hearts with those of model organisms (2021) (8)
- Age- and gender-related differences in the use of secondary medical prevention after primary vascular surgery: a nationwide follow-up study. (2012) (8)
- Linked annotations: a middle ground for manual curation of biomedical databases and text corpora (2015) (8)
- Spinal versus general anaesthesia for bone marrow harvesting. (1995) (8)
- Identification of hyper-rewired genomic stress non-oncogene addiction genes across 15 cancer types (2019) (8)
- Safety of Carotid Endarterectomy After Intravenous Thrombolysis for Acute Ischaemic Stroke: A Case-Controlled Multicentre Registry Study (2014) (8)
- One tagger, many uses: Illustrating the power of ontologies in dictionary-based named entity recognition (2016) (7)
- Predicting Kinase Activity in Angiotensin Receptor Phosphoproteomes Based on Sequence-Motifs and Interactions (2014) (7)
- Protein-protein interactions: analysis and prediction (2009) (7)
- Single layer colonic anastomosis with a continuous absorbable monofilament polyglyconate suture. (1995) (7)
- DoReMi: context-based prioritization of linear motif matches (2014) (6)
- EXTRACT 2.0: text-mining-assisted interactive annotation of biomedical named entities and ontology terms (2017) (6)
- Differentially Expressed miRNAs in Ulcerative Colitis and Crohn’s Disease (2022) (6)
- Functional network analysis of obese and lean Göttingen minipigs elucidates changes in oxidative and inflammatory networks in obese pigs (2014) (6)
- Sharing annotations better: RESTful Open Annotation (2015) (6)
- Flow cytometry comparison of CD34+ subsets in bone marrow and peripheral blood after priming with glycosylated or non-glycosylated rhG-CSF (1998) (6)
- Circular reasoning rather than cyclic expression (2008) (6)
- Linking glycemic dysregulation in diabetes to symptoms, comorbidities, and genetics through EHR data mining (2019) (6)
- A time-resolved multi-omics atlas of Acanthamoeba castellanii encystment (2022) (5)
- Patients and physicians agree only partially in symptoms and clinical findings before and after treatment for varicose veins (2018) (5)
- Conservative treatment of vascular graft infections in the groin. (1997) (5)
- Reactions of [NH3+·, H2O] with carbonyl compounds: A McLafferty rearrangement within a complex? (2004) (5)
- Evolution and regulation of cellular periodic processes: a role for paralogues (2010) (5)
- Real-time tagging of biomedical entities (2016) (5)
- Tagger: BeCalm API for rapid named entity recognition (2017) (5)
- An Integrative Approach to Virus-Host Protein-Protein Interactions. (2018) (5)
- Short-term liquid marrow cultures are supported by a mixture of haematopoietic cytokines but do not purge for acute myeloid or lymphoid leukemic marrow cells. (1993) (5)
- Improved metagenome binning and assembly using deep variational autoencoders (2021) (5)
- [Local thrombolysis in proximal deep venous thrombosis of the lower extremity]. (2002) (5)
- Erratum to: Dose-Specific Adverse Drug Reaction Identification in Electronic Patient Records: Temporal Data Mining in an Inpatient Psychiatric Population (2014) (4)
- Search Databases and Statistics: Pitfalls and Best Practices in Phosphoproteomics. (2016) (4)
- MIACA – Minimum Information About a Cellular Assay: Standardized description of cell-based functional assay projects (2013) (4)
- Integrative Systems Biology (2016) (4)
- TIGA: Target illumination GWAS analytics (2020) (4)
- Supplementary Information for : Co-evolution of transcriptional and posttranslational cell cycle regulation (2006) (4)
- Cytoscape stringApp 2.0: Analysis and Visualization of Heterogeneous Biological Networks. (2022) (4)
- Visualize omics data on networks with Omics Visualizer, a Cytoscape App. (2020) (4)
- [Laparoscopic cholecystectomy in Denmark. A prospective registration]. (1995) (4)
- [4 years of experiences with Karbase. A tool for quality development in vascular surgery]. (1994) (4)
- [Carotid endarterectomy. Experiences with shortening of interval between symptom and operation]. (2008) (4)
- Use of Angiotensin-Converting Enzyme Inhibitors and Cardiovascular Outcomes Following Primary Vascular Surgery (2012) (4)
- [Clinical indicators and quality databases--a review]. (2002) (4)
- The use of a personal computer program for monitoring wound infections and other complications in orthopedics (1991) (4)
- Does better structure and process management provide higher outcome quality for the individual patient and among Danish hospital departments (2010) (3)
- Interest and possibilities of performing post-operative registration of wound infections in Danish Orthopaedic Departments. A study survey (1990) (3)
- Vascular registries--are they worth the effort? (2000) (3)
- Supplementary Materials for Linear Motif Atlas for Phosphorylation-Dependent Signaling (2008) (3)
- Isotope effects on the unimolecular dissociation of ionized 3-methyl-2-butanol: reactions via a long-lived C-H-C hydrogen-bridged ion-neutral complex. (2005) (3)
- FAVA: High-quality functional association networks inferred from scRNA-seq and proteomics data (2023) (3)
- The Unimolecular Reactions of Ionized Methylacetamides (2004) (3)
- The impact of PrsA over-expression on the Bacillus subtilis transcriptome during fed-batch fermentation of alpha-amylase production (2022) (3)
- Quality analysis and integration of large-scale molecular data sets (2004) (3)
- CD68+/CD83+/CD1a− dendritic cell subsets from patients with multiple myeloma are not infected with human herpesvirus 8 (2000) (3)
- An integrative method to unravel the host-parasite interactome: an orthology-based approach (2017) (3)
- [Laparoscopic vascular surgery]. (2004) (3)
- SnapShot: S-Phase Entry and Exit (2019) (3)
- [Data registration of postoperative complications in connection with orthopedic surgery. A review of 4,346 surgical wounds]. (1991) (2)
- Selected abstracts from the July issue of the European Journal of Vascular and Endovascular SurgeryVariation in Clinical Practice in Carotid Surgery in Nine Countries 2005–2010. Lessons from VASCUNET and Recommendations for the Future of National Clinical Audit (2012) (2)
- P088 Transcriptome landscape of protein-coding genes and long noncoding RNAs in the colon and blood of DSS-induced mouse model of Acute ulcerative colitis (2019) (2)
- Creation and evaluation of a dictionary-based tagger for virus species and proteins (2017) (2)
- Femoral-Infrapopliteal Polytetrafluoroethylene Graft Bypass for Limb Salvage (1991) (2)
- EXTRACT 2.0: interactive identification of biological entities mentioned in text to assist database curation and knowledge extraction (2017) (2)
- [Registration of postoperative wound complications at a department of vascular surgery]. (1991) (2)
- Arena3Dweb: Interactive 3D visualization of multilayered networks supporting multiple directional information channels, clustering analysis and application integration (2022) (2)
- Protein annotation in the era of personal genomics. (2010) (2)
- Light-induced asymmetries in embryonic retinal gene expression are mediated by the vascular system and extracellular matrix (2022) (2)
- Pharos 2023: an integrated resource for the understudied human proteome (2022) (2)
- [Vena saphena magna in situ bypass to the ankel and foot. A prospective assessment of results of 101 procedures in 94 patients with threatening amputation]. (1997) (2)
- The Formation and Heats of Formation of Simple α-Distonic Ions (2004) (2)
- Identification of hyper-rewired genomic stress non-oncogene addiction genes across 15 cancer types. (2019) (2)
- OnTheFly 2.0: A tool for automatic annotation of files and biological information extraction (2013) (2)
- A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research (2022) (2)
- Site-specific characterization of endogenous SUMOylation across species and organs (2018) (1)
- Improving Peptide-Spectrum Matching by Fragmentation Prediction Using Hidden Markov Models. (2019) (1)
- Recent advances in kinase signaling network profiling by mass spectrometry. (2023) (1)
- Syddansk Universitet Impact of microRNA-130 a on the neutrophil proteome (2015) (1)
- A Workflow of Integrated Resources to Catalyze Network Pharmacology Driven COVID-19 Research (2020) (1)
- 1 Reflect – Augmented Browsing for the Life Scientist (2009) (1)
- [Quality of data on computerized registration of postoperative wound infections]. (1995) (1)
- Crystal ball. Systems biology: in the broadest sense of the word. (2005) (1)
- The TISSUES resource for the tissue-specificity of genes (2015) (1)
- [Continuous monitoring of wound infections and other postoperative complications using MIKRO-ORT]. (1990) (1)
- [IT systems for clinical databases--status and perspectives]. (2002) (1)
- About the dark corners in the gene function space of Escherichia coli remaining without illumination by scientific literature (2023) (1)
- [Elephantiasis nostras. A rare complication to erysipelas]. (1991) (1)
- Improving peptide-spectrum matching by fragmentation prediction using Hidden Markov Models (2018) (1)
- Reply to 'Mining electronic health records: an additional perspective' (2012) (1)
- STRING and STITCH: known and predicted interactions between proteins and chemicals (2008) (1)
- U‐CIE [/juː ‘siː/]: Color encoding of high‐dimensional data (2021) (1)
- PLOS Computational Biology 2017 Reviewer and Editorial Board Thank You (2018) (1)
- [In situ bypass and diabetes]. (1993) (1)
- Crisis as Opportunity – Opportunity as Crisis (2016) (1)
- A Comprehensive Approach Characterizing Fusion Proteins and Their Interactions Using Biomedical Literature (2018) (1)
- Mass spectrometry-based proteomics imputation using self supervised deep learning (2023) (1)
- Compounds: A McLafferty Rearrangement Within a Complex? (2004) (1)
- Gene–Tissue relationships from the TISSUES database (2015) (1)
- Enethiols IX Alkylation of 2‐Mercapto‐Cinnamic Acids by Ion Pair Extraction Technique (2010) (1)
- Yield and Integrity of RNA from Brain Samples are Largely Unaffected by Pre-analytical Procedures (2020) (1)
- Enethiols X. About 2-Mercapto-Cinnamic Acids† (2010) (1)
- Loss of N-terminal acetyltransferase A activity induces thermally unstable ribosomal proteins and increases their turnover (2022) (1)
- [Changing vascular surgery]. (2009) (0)
- [Endovascular and open repair of abdominal aortic aneurysm are still both warranted--a systematic review]. (2012) (0)
- TransporterPAL: An integrative database Transporter Prediction ALgorithm (2022) (0)
- [Centralisation of vascular surgical treatment provides better results]. (2006) (0)
- DISEASES v1 (human, text mining, full) (2015) (0)
- 887: Expression and turnover of proteins govern their sampling for HLA class I presentation (2014) (0)
- [Value of routine follow-up after infrainguinal arterial reconstruction]. (1992) (0)
- Light-induced asymmetries in the embryonic retina are mediated by the vascular system and extracellular matrix (2021) (0)
- Impaired Multifocal Electroretinogram Implicit Times and Amplitudes in Symptomatic Carotid Artery Disease (2011) (0)
- Audit of the Danish national vascular database. (1996) (0)
- [Clinical databases for quality assurance and risk management]. (2001) (0)
- Gene association networks : Large-scale integration of data and text (2016) (0)
- [Distribution of colonic surgery among surgeons in the city of Copenhagen]. (2002) (0)
- [A hybrid approach to surgery for thoracic aortic aneurysm]. (2009) (0)
- Drug target ontology to classify and integrate drug discovery data (2017) (0)
- The Danish health economic modelling study on AAA screening is flawed (2017) (0)
- ENETHIOLS. IX. ALKYLATION OF 2-MERCAPTOCINNAMIC ACIDS BY ION PAIR EXTRACTION TECHNIQUE (1977) (0)
- Selected abstracts from the June issue of the European Journal of Vascular and Endovascular SurgeryCarotid Endarterectomy after Intravenous Thrombolysis for Acute Cerebral Ischaemic Attack: Is It Safe? (2013) (0)
- Using National Electronic Health Care Registries to Analyse and Predict Alcoholic Liver Disease (2020) (0)
- DISEASES v1 (human, experiments, filtered) (2015) (0)
- COMPARTMENTS v1 (yeast, predictions) (2015) (0)
- COMPARTMENTS v1 (mouse, knowledge) (2015) (0)
- Author response: Linking glycemic dysregulation in diabetes to symptoms, comorbidities, and genetics through EHR data mining (2019) (0)
- Protein Function Prediction : Application of a Propositional Rules Learning System to a set of Human Protein Sequences (2003) (0)
- [Modern treatment of type B dissections]. (2008) (0)
- Pancreatic cancer symptom trajectories from Danish registry data and free text in electronic health records (2023) (0)
- P135 MAJOR GENE REGULATORS AFFECTED IN COLON AND BLOOD OF DEXTRAN SODIUM SULFATE ACUTE COLITIS MURINE MODEL (2020) (0)
- Mining literature and -omics (meta)data to associate microorganisms, biological processes, and environment types (2020) (0)
- COMPARTMENTS v1 (rat, predictions) (2015) (0)
- Volume of procedures and outcome of treatment. Danish study found no association between hospital and surgeon volume. (2003) (0)
- The What, Why and How of openness in science (2008) (0)
- S1000: A better taxonomic name corpus for biomedical information extraction (2023) (0)
- [Complications of laparoscopic cholecystectomy]. (1991) (0)
- Reflect: A browser plugin for life scientist (2011) (0)
- [Bilateral deep venous thrombosis and vena cava aplasia treated with local thrombolysis]. (2008) (0)
- [Comments to Ole Chr.Roder's editorial on subacute carotid endarterectomy]. (2008) (0)
- COMPARTMENTS v1 (worm, text mining) (2015) (0)
- COMPARTMENTS v1 (fly, predictions) (2015) (0)
- Response to the comment on ‘Flow cytometry comparison of CD34+ subsets in bone marrow and peripheral blood after priming with glycosylated or non-glycosylated rhG-CSF’ by JM Miclea (1999) (0)
- OnTheFly 2.0 beta: automated annotation of scientific documents (2013) (0)
- Biomedical literature mining (and why we really need Open Access) (2007) (0)
- European vascular registries: Vascunet and Eurovasc (2004) (0)
- Students Speak: Basketball in the USA (1996) (0)
- COMPARTMENTS v1 (yeast, knowledge) (2015) (0)
- DISEASES v1 (human, knowledge, full) (2015) (0)
- COMPARTMENTS v1 (yeast, text mining) (2015) (0)
- Metastatic infiltration of nervous tissue and periosteal nerve sprouting in multiple myeloma induced bone pain (2023) (0)
- Fishing for new Alzheimer's drug targets in large proteomics and transcriptomics datasets using expert-curated pathways and predicted interaction networks. (2007) (0)
- [Vascular surgical procedures in Denmark 1996-2004. Own vascular surgical services associated with a higher incidence of operations]. (2007) (0)
- LocText: relation extraction of protein localizations to assist database curation (2018) (0)
- Ruptured aortic aneurysm: Prediction of outcome (1995) (0)
- Exploring the Danish Diseasome (2013) (0)
- The current understanding of protein – lipid recognition comes from the study of a limited number of lipids , principally (2010) (0)
- TISSUES v1 (human, text mining, filtered) (2015) (0)
- Cross-species high-resolution transcriptome profiling suggests biomarkers and therapeutic targets for ulcerative colitis (2023) (0)
- Are you familiar with the northern lights? (2001) (0)
- COMPARTMENTS v1 (human, predictions) (2015) (0)
- Text Mining of Disease–Lifestyle Associations to Explain Comorbidities in Electronic Health Registries (2017) (0)
- University of Southern Denmark Antibiotic regimens for neonatal sepsis A protocol for a systematic review with meta-analysis (2019) (0)
- Transcriptome profiling of ulcerative colitis mouse model suggests biomarkers and therapeutic targets for human colitis (2020) (0)
- COMPARTMENTS v1 (mouse, text mining) (2015) (0)
- Mass Spectrometric Analysis of Lysine Ubiquitylation Reveals Promiscuity at Site Level* □ S (2011) (0)
- TISSUES v1 (human, text mining, full) (2015) (0)
- Higher alcohols synthesis from syngas over carbon-nanotube supported Iron-Chromium catalysts (2012) (0)
- ENETHIOLS X. ABOUT 2-MERCAPTOCINNAMIC ACIDS (1977) (0)
- HOODS: finding context-specific neighborhoods of proteins, chemicals and diseases (2015) (0)
- [Registration of orthopedic surgery complications]. (1989) (0)
- [Vascular reconstruction of venous occlusion in the lower extremities. Experiences in 12 patients]. (2002) (0)
- Just-in-time assembly of cell-cycle protein complexes (2008) (0)
- The ESCA‐method as an additional tool for structure elucidation: Investigations of compounds derived from active methylene compounds and carbon disulfide (2010) (0)
- SYNTHESIS, REARRANGEMENT, AND FRAGMENTATION OF KETENE MERCAPTALS DERIVED FROM KETONES OR BETA-DIKETONES AND CARBON DISULFIDE (1974) (0)
- Quantitative metaproteomics of medieval dental calculus reveals individual oral health status (2018) (0)
- [Abdominal aortic aneurysms]. (2008) (0)
- COMPARTMENTS v1 (fly, knowledge) (2015) (0)
- Impact of microRNA-130a on the neutrophil proteome (2015) (0)
- [Endovenous treatment modalities for great saphenous vein varicosities]. (2007) (0)
- Entity mention in articles used for benchmark (2018) (0)
- DISEASES v1 (human, knowledge, filtered) (2015) (0)
- Proteomics Dissection of Cardiac Protein Profiles of Humans and Model Organisms (2020) (0)
- THE ESCA-METHOD AS AN ADDITIONAL TOOL FOR STRUCTURE ELUCIDATION INVESTIGATIONS OF COMPOUNDS DERIVED FROM ACTIVE METHYLENE COMPOUNDS AND CARBON DISULFIDE (1974) (0)
- COMPARTMENTS v1 (fly, text mining) (2015) (0)
- The house guest that stayed (2011) (0)
- Re tinal angiographic blood flow is reduced in the ocular ischaemic s yndr ome (2013) (0)
- REACTIONS OF BETA-KETOESTERS AND NITRILES WITH CARBON DISULFIDE, TAUTOMERISM OF DITHIOESTERS AND THIO-CLAISEN REARRANGEMENT OF KETENE MERCAPTALS (1974) (0)
- Faculty Opinions recommendation of The mPower study, Parkinson disease mobile data collected using ResearchKit. (2017) (0)
- Application of text mining for identification of ADRs in clinical notes of electronic patient records-a literature review (2013) (0)
- [Quality in focus. The Danish Society for Health Sector Quality]. (2008) (0)
- Metastatic infiltration of nervous tissue and periosteal nerve sprouting in multiple 1 myeloma induced bone pain 2 Abbreviated title : Myeloma-induced bone pain (2023) (0)
- Identifying the genes impacted by cell proliferation in proteomics and transcriptomics studies (2022) (0)
- Carotid Artery Pseudoaneurysm Treated with an ePTFE-prosthesis (2005) (0)
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