Louxin Zhang
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Computer Science
Louxin Zhang's Degrees
- Masters Computer Science Stanford University
- Bachelors Computer Science Tsinghua University
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Why Is Louxin Zhang Influential?
(Suggest an Edit or Addition)According to Wikipedia, Louxin Zhang is a Canadian computational biologist. He is currently a professor in the Department of Mathematics at the National University of Singapore. He is recognized for his contributions to combinatorial semigroup theory in mathematics. In addition, he is recognized for his work on the mathematical understanding of phylogenetic trees and networks, as well as the analysis of spaced seeds for sequence comparison in bioinformatics.
Louxin Zhang's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- From Gene Trees to Species Trees (2000) (1697)
- Reconstructing contiguous regions of an ancestral genome. (2006) (292)
- Distinguishing string selection problems (2003) (247)
- Transmission interval estimates suggest pre-symptomatic spread of COVID-19 (2020) (236)
- Evidence for transmission of COVID-19 prior to symptom onset (2020) (222)
- Perfect phylogenetic networks with recombination (2001) (207)
- On a Mirkin-Muchnik-Smith Conjecture for Comparing Molecular Phylogenies (1997) (136)
- Improved anticancer drug response prediction in cell lines using matrix factorization with similarity regularization (2017) (89)
- Good spaced seeds for homology search (2004) (76)
- Sensitivity analysis and efficient method for identifying optimal spaced seeds (2004) (73)
- More taxa are not necessarily better for the reconstruction of ancestral character states. (2008) (70)
- DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications (2008) (65)
- From Gene Trees to Species Trees II: Species Tree Inference by Minimizing Deep Coalescence Events (2011) (63)
- On computing the nearest neighbor interchange distance (1999) (61)
- WebPHYLIP: a web interface to PHYLIP (1999) (59)
- Superiority and complexity of the spaced seeds (2006) (55)
- On Tree-Based Phylogenetic Networks (2015) (55)
- Genome-scale analysis of positional clustering of mouse testis-specific genes (2005) (54)
- Counting motifs in the human interactome (2013) (54)
- On reconstructing species trees from gene trees in term of duplications and losses (1998) (50)
- Optimal bounds for matching routing on trees (1997) (45)
- Recent Applications of Hidden Markov Models in Computational Biology (2004) (44)
- Greedy method for inferring tandem duplication history (2003) (39)
- Divide-and-conquer approach for the exemplar breakpoint distance (2005) (39)
- Sequence Comparison - Theory and Methods (2008) (39)
- Approximating the spanning star forest problem and its applications to genomic sequence alignment (2007) (38)
- A decomposition theorem and two algorithms for reticulation-visible networks (2017) (33)
- Some Notes on the Nearest Neighbour Interchange Distance (1996) (33)
- Locating a Tree in a Phylogenetic Network in Quadratic Time (2015) (31)
- Conjugacy in special monoids (1991) (30)
- Positive correlation between gene coexpression and positional clustering in the zebrafish genome (2009) (30)
- Translation initiation sites prediction with mixture Gaussian models in human cDNA sequences (2004) (27)
- Procrastination Leads to Efficient Filtration for Local Multiple Alignment (2006) (27)
- The Consecutive Ones Submatrix Problem for Sparse Matrices (2007) (26)
- On Weakly Confluent Monadic String-Rewriting Systems (1993) (24)
- Reconciliation with Non-binary Gene Trees Revisited (2014) (23)
- A survey and systematic assessment of computational methods for drug response prediction. (2020) (23)
- Structural properties of the reconciliation space and their applications in enumerating nearly-optimal reconciliations between a gene tree and a species tree (2011) (22)
- Quick, Practical Selection of Effective Seeds for Homology Search (2005) (22)
- Solving the tree containment problem in linear time for nearly stable phylogenetic networks (2017) (21)
- Applying rewriting methods to special monoids (1992) (21)
- Predicting chemotherapeutic drug combinations through gene network profiling (2016) (20)
- Run Probabilities of Seed-Like Patterns and Identifying Good Transition Seeds (2008) (19)
- Superiority of Spaced Seeds for Homology Search (2007) (19)
- Fitness Profiling Links Topoisomerase II Regulation of Centromeric Integrity to Doxorubicin Resistance in Fission Yeast (2015) (19)
- A program for verification of phylogenetic network models (2016) (19)
- Profiling the transcription factor regulatory networks of human cell types (2014) (18)
- A short proof of a theorem of Adjan (1992) (18)
- RecPhyloXML: a format for reconciled gene trees (2018) (18)
- Transcriptome analysis of cold syndrome using microarray. (2007) (18)
- Counting and enumerating tree-child networks and their subclasses (2020) (17)
- Conversion events in gene clusters (2011) (17)
- Better Approximation of Diagonal-Flip Transformation and Rotation Transformation (1998) (17)
- A post-processing method for optimizing synthesis strategy for oligonucleotide microarrays (2005) (16)
- Analyzing the Fitch Method for Reconstructing Ancestral States on Ultrametric Phylogenetic Trees (2010) (16)
- Computing Distances between Evolutionary Trees (1998) (16)
- Generating normal networks via leaf insertion and nearest neighbor interchange (2019) (15)
- Solving the Tree Containment Problem for Genetically Stable Networks in Quadratic Time (2015) (14)
- Greedy Selection of Species for Ancestral State Reconstruction on Phylogenies: Elimination Is Better than Insertion (2010) (14)
- On the asymptotic growth of the number of tree-child networks (2020) (14)
- A program to compute the soft Robinson–Foulds distance between phylogenetic networks (2017) (13)
- Clusters, Trees, and Phylogenetic Network Classes (2019) (13)
- Fitting Distances by Tree Metrics with Increment Error (1999) (13)
- Counting and enumerating galled networks (2018) (12)
- A Survey and Systematic Assessment of Computational Methods for Drug Response Prediction (2019) (12)
- Existence of Inverted Profile in Chemically Responsive Molecular Pathways in the Zebrafish Liver (2011) (11)
- Many-to-One Packed Routing via Matchings (1997) (11)
- Reconstructing Recombination Network from Sequence Data: The Small Parsimony Problem (2007) (11)
- Routing on Trees via Matchings (1995) (11)
- Reconciliation of Gene and Species Trees With Polytomies (2012) (11)
- Efficient estimation of the accuracy of the maximum likelihood method for ancestral state reconstruction (2011) (11)
- Effect of Incomplete Lineage Sorting On Tree-Reconciliation-Based Inference of Gene Duplication (2013) (11)
- Revealing Mammalian Evolutionary Relationships by Comparative Analysis of Gene Clusters (2012) (11)
- CAGE: Combinatorial Analysis of Gene-Cluster Evolution (2010) (10)
- Decision problems for finite special string-rewriting systems that are confluent on some congruence class (1991) (10)
- On the Conjugacy Problem for One-Relator Monoids with Elements of Finite Order (1992) (10)
- A protein patent query system powered by Kleisli (1998) (10)
- On the Approximation of Longest Common Nonsupersequences and Shortest Common Nonsubsequences (1995) (10)
- Algorithmic and Complexity Issues of Three Clustering Methods in Microarray Data Analysis (2005) (10)
- Locating a Tree in a Reticulation-Visible Network in Cubic Time (2015) (9)
- On counting tandem duplication trees. (2004) (9)
- Twist-Rotation Transformations of Binary Trees and Arithmetic Expressions (1999) (9)
- Controlling Size When Aligning Multiple Genomic Sequences with Duplications (2006) (8)
- Maximum Likelihood Inference of the Evolutionary History of a PPI Network from the Duplication History of Its Proteins (2013) (8)
- How much can deep learning improve prediction of the responses to drugs in cancer cell lines? (2021) (8)
- Separating Auxiliary Arity Hierarchy of First-Order Incremental Evaluation Systems Using (3k+1)-ary Input Relations (2000) (8)
- Small Weight Bases for Hamming Codes (1995) (8)
- Are the Duplication Cost and Robinson-Foulds Distance Equivalent? (2014) (7)
- A Polynomial Algebra Method for Computing Exemplar Breakpoint Distance (2011) (7)
- Compression of Phylogenetic Networks and Algorithm for the Tree Containment Problem (2019) (7)
- An Efficient Method for DNA-Based Species Assignment via Gene Tree and Species Tree Reconciliation (2010) (7)
- Asymptotic enumeration and distributional properties of galled networks (2020) (7)
- Reconstruction of Network Evolutionary History from Extant Network Topology and Duplication History (2012) (7)
- S‐Cluster++: a fast program for solving the cluster containment problem for phylogenetic networks (2018) (7)
- Motif Discovery with Data Mining in 3D protein Structure Databases: Discovery, Validation and Prediction of the U-Shape zinc binding ("Huf-zinc") Motif (2013) (6)
- Counting Tree-Child Networks and Their Subclasses (2019) (6)
- A new clustering method for microarray data analysis (2002) (6)
- Reconciliation With Nonbinary Gene Trees Revisited (2017) (6)
- Efficient Methods for Inferring Tandem Duplication History (2002) (5)
- Models and Methods in Comparative Genomics (2006) (5)
- Approximation Algorithms for the Consecutive Ones Submatrix Problem on Sparse Matrices (2004) (5)
- Bounding the Size of a Network Defined By Visibility Property (2015) (5)
- Network model and efficient method for detecting relative duplications or horizontal gene transfers (2011) (5)
- The Bourque distances for mutation trees of cancers (2020) (5)
- Inverted Expression Profiles of Sex-Biased Genes in Response to Toxicant Perturbations and Diseases (2013) (4)
- Addition in log2n + O(1) Steps on Average: A Simple Analysis (1998) (4)
- A stable iterative method for refining discriminative gene clusters (2008) (4)
- A Linear-Time Algorithm for Reconciliation of Non-binary Gene Tree and Binary Species Tree (2013) (4)
- Spectrum-Based De Novo Repeat Detection in Genomic Sequences (2008) (4)
- Rational strong codes and structure of rational group languages (1986) (4)
- From gene trees to species trees II: Species tree inference in the deep coalescence model (2010) (4)
- Toxicogenomic Analysis Suggests Chemical-Induced Sexual Dimorphism in the Expression of Metabolic Genes in Zebrafish Liver (2012) (4)
- Selected Topics in Post-Genome Knowledge Discovery (2004) (3)
- Approximating the Spanning k-Tree forest Problem (2009) (3)
- Modern BLAST Programs (2010) (3)
- Nearest Neighbor Interchange and Related Distances (2008) (3)
- Inferring the Recent Duplication History of a Gene Cluster (2009) (3)
- Some Properties of Finite Special String-Rewriting Systems (1992) (3)
- Fast Methods for Solving the Cluster Containment Problem for Phylogenetic Networks (2018) (3)
- A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications (2007) (3)
- Author response: Evidence for transmission of COVID-19 prior to symptom onset (2020) (3)
- Proceedings of the 8th Annual International Conference on Computing and Combinatorics (2002) (2)
- On the descriptive power of special Thue systems (1996) (2)
- Guest Editor’s Forward (2016) (2)
- Locating a Phylogenetic Tree in a Reticulation-Visible Network in Quadratic Time (2016) (2)
- Stability Implies Computational Tractability: Locating a Tree in a Stable Network is Easy (2015) (2)
- Complexity Study on Two Clustering Problems (2001) (2)
- A PTAS For The k-Consensus Structures Problem Under Squared Euclidean Distance (2008) (2)
- The compressions of reticulation-visible networks are tree-child (2018) (2)
- Two combinatorial optimization problems for SNP discovery using base-specific cleavage and mass spectrometry (2012) (2)
- The Pre-NTS Property is Undecidable for Context-Free Grammars (1992) (2)
- Selecting Genomes for Reconstruction of Ancestral Genomes (2007) (2)
- A Tool for Non-binary Tree Reconciliation (2013) (1)
- The Sackin Index of Simplex Networks (2021) (1)
- ANALYSIS OF SPACED SEED TECHNIQUE IN SEQUENCE ALIGNMENT (2005) (1)
- Run Probability of High-Order Seed Patterns and its Applications to Finding Good Transition Seeds (2007) (1)
- [Effect of smoking on the microRNAs expression in pneumoconiosis patients]. (2014) (1)
- ZDOG: zooming in on dominating genes with mutations in cancer pathways (2019) (1)
- Handbook of Combinatorial Optimization Computing Distances between Evolutionary Trees (1998) (1)
- Complexity Study on Two Clustering Problems ( Extended Abstract ) (0)
- HANDBOOK OF COMBINATORIAL OPTIMIZATION (2006) (0)
- Online buffer management for transmitting packets with processing cycles (2018) (0)
- Improved anticancer drug response prediction in cell lines using matrix factorization with similarity regularization (2017) (0)
- TxT: a tool for reconciliation of non-binary trees (2013) (0)
- Counting Motifs in the Entire Biological Network from Noisy and Incomplete Data - (Extended Abstract) (2013) (0)
- The k-RF Measures for Labeled Trees (2023) (0)
- LETTEROnCounting Tandem Duplication Trees (2004) (0)
- S-Cluster plus plus : a fast program for solving the cluster containment problem for phylogenetic networks (2019) (0)
- Can Multiple Phylogenetic Trees Be Displayed in a Tree-Child Network Simultaneously? (2022) (0)
- Computing and combinatorics : 8th Annual International Conference, COCOON 2002, Singapore, August 15-17, 2002 : proceedings (2002) (0)
- A PTAS for the k-Consensus Structures Problem Under Euclidean Squared Distance (2008) (0)
- Expression Profile of Immunogenes in Cold Constitution (2007) (0)
- Data Integration with SUMO Detects Latent Relationships Between Patients in Lower-Grade Gliomas (2020) (0)
- Recent Progresses in the Combinatorial and Algorithmic Study of Rooted Phylogenetic Networks (2020) (0)
- Analyzing the Accuracy of the Fitch Method for Reconstructing Ancestral States on Ultrametric Phylogenies (2009) (0)
- Nearest Neighbor Interchange and Related Distances N 573 Navigation Nearest Neighbor Interchange and Related Distances (2008) (0)
- Fast Algorithms for the Cluster Containment Problem (2018) (0)
- On Distances between Phylogenetic Trees (Extended Abstract) (1997) (0)
- Alignment seeding strategies using contiguous pyrimidine purine matches (2012) (0)
- The Bourque distances for mutation trees of cancers (2021) (0)
- Title Two combinatorial optimization problems for SNP discovery using base-specific cleavage and mass spectrometry (2017) (0)
- Computing And Combinatorics Conference -- Cocoon'02 (2004) (0)
- TR B 9 / 0 6 Comparison Of Missing Value Estimation In Cell-Cycleregulated Genes Prediction (2004) (0)
- A program to compute the soft Robinson–Foulds distance between phylogenetic networks (2017) (0)
- Stage-specific protein-domain mutational profile of invasive ductal breast cancer (2020) (0)
- ZDOG: zooming in on dominating genes with mutations in cancer pathways (2019) (0)
- Two Remarks on The Sackin and Colless Indices of Trees (2022) (0)
- A Robust Method for Generating Discriminative Gene Clusters (2007) (0)
- Genaralized Neighbor Joining Approaches for Reconstructing Tandem Duplication History : a comparitive study (2003) (0)
- Two results about the Sackin and Colless indices for phylogenetic trees and their shapes (2022) (0)
- Introduction to the Special Issue of the 18th Annual International RECOMB Satellite Workshop on Comparative Genomics (2021) (0)
- POST-GENOME KNOWLEDGE DISCOVERY Edited by Institute for Infocomm Research National University of Singapore (2003) (0)
- log, n + 0( 1) steps on average A simple analysis (1998) (0)
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