Luo-nan Chen
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Why Is Luo-nan Chen Influential?
(Suggest an Edit or Addition)Luo-nan Chen's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Chaotic simulated annealing by a neural network model with transient chaos (1995) (636)
- Stability of genetic regulatory networks with time delay (2002) (407)
- Inferring gene regulatory networks from multiple microarray datasets (2006) (321)
- Stability of Genetic Networks With SUM Regulatory Logic: Lur'e System and LMI Approach (2006) (317)
- Inferring gene regulatory networks from gene expression data by path consistency algorithm based on conditional mutual information (2012) (284)
- Quantitative function for community detection. (2008) (219)
- Early Diagnosis of Complex Diseases by Molecular Biomarkers, Network Biomarkers, and Dynamical Network Biomarkers (2014) (207)
- Personalized characterization of diseases using sample-specific networks (2016) (180)
- Biomolecular Networks: Methods and Applications in Systems Biology (2009) (171)
- Chaos and asymptotical stability in discrete-time neural networks (1997) (164)
- Prediction of protein-RNA binding sites by a random forest method with combined features (2010) (152)
- Molecular communication through stochastic synchronization induced by extracellular fluctuations. (2005) (149)
- Network-based drug repositioning. (2013) (141)
- Identifying critical transitions and their leading biomolecular networks in complex diseases (2012) (141)
- Synchronization of coupled nonidentical genetic oscillators (2006) (137)
- Uncovering signal transduction networks from high-throughput data by integer linear programming (2008) (136)
- Protein classification with imbalanced data (2007) (134)
- Global searching ability of chaotic neural networks (1999) (133)
- NARROMI: a noise and redundancy reduction technique improves accuracy of gene regulatory network inference (2013) (131)
- Identifying dysregulated pathways in cancers from pathway interaction networks (2012) (122)
- Discovering functions and revealing mechanisms at molecular level from biological networks (2007) (121)
- Modeling genetic switches with positive feedback loops. (2003) (117)
- Alignment of molecular networks by integer quadratic programming (2007) (117)
- Conditional mutual inclusive information enables accurate quantification of associations in gene regulatory networks (2014) (114)
- Detecting tissue-specific early warning signals for complex diseases based on dynamical network biomarkers: study of type 2 diabetes by cross-tissue analysis (2014) (109)
- Stochastic Stability of Genetic Networks With Disturbance Attenuation (2007) (107)
- NOA: a novel Network Ontology Analysis method (2011) (107)
- Identifying disease genes and module biomarkers by differential interactions (2012) (102)
- Coexpression network analysis in chronic hepatitis B and C hepatic lesions reveals distinct patterns of disease progression to hepatocellular carcinoma. (2012) (96)
- A model of periodic oscillation for genetic regulatory systems (2002) (94)
- De novo prediction of RNA-protein interactions from sequence information. (2013) (93)
- Gene function prediction using labeled and unlabeled data (2008) (93)
- Noise-induced cooperative behavior in a multicell system (2005) (91)
- Identifying dysfunctional crosstalk of pathways in various regions of Alzheimer's disease brains (2010) (91)
- Big Biological Data: Challenges and Opportunities (2014) (91)
- Detecting disease associated modules and prioritizing active genes based on high throughput data (2010) (87)
- Network‐Based Prediction of Protein Function (2009) (87)
- Stochastic synchronization of genetic oscillator networks (2007) (80)
- Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases (2009) (79)
- Identifying critical transitions of complex diseases based on a single sample (2014) (77)
- Modeling Biomolecular Networks in Cells: Structures and Dynamics (2010) (77)
- Detecting Causality from Nonlinear Dynamics with Short-term Time Series (2014) (76)
- Identifying early-warning signals of critical transitions with strong noise by dynamical network markers (2015) (75)
- Identifying cancer-related microRNAs based on gene expression data (2015) (74)
- Clustering complex networks and biological networks by nonnegative matrix factorization with various similarity measures (2008) (74)
- PPIM: A Protein-Protein Interaction Database for Maize1 (2015) (74)
- Quantifying critical states of complex diseases using single-sample dynamic network biomarkers (2017) (73)
- Modeling Biomolecular Networks in Cells (2010) (72)
- Detection for disease tipping points by landscape dynamic network biomarkers (2018) (67)
- Synchronizing Genetic Oscillators by Signaling Molecules (2005) (67)
- Controlling the onset of Hopf bifurcation in the Hodgkin-Huxley model. (2008) (67)
- The knowledge-integrated network biomarkers discovery for major adverse cardiac events. (2008) (66)
- A systems biology approach to identify effective cocktail drugs (2010) (66)
- Dynamics of gene regulatory networks with cell division cycle. (2004) (62)
- Detecting early-warning signals of type 1 diabetes and its leading biomolecular networks by dynamical network biomarkers (2013) (62)
- Hubs with Network Motifs Organize Modularity Dynamically in the Protein-Protein Interaction Network of Yeast (2007) (61)
- Prediction of hot spots in protein interfaces using a random forest model with hybrid features. (2012) (61)
- FPPI: Fusarium graminearum protein-protein interaction database. (2009) (60)
- Research and applications: An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer (2013) (58)
- Models and Algorithms for Haplotyping Problem (2006) (57)
- Measuring robustness of community structure in complex networks (2014) (57)
- Synchronization of genetic oscillators. (2008) (56)
- Clustered model reduction of positive directed networks (2015) (56)
- Analytical distribution and tunability of noise in a model of promoter progress. (2012) (52)
- Randomly distributed embedding making short-term high-dimensional data predictable (2018) (51)
- The Dynamics of DNA Methylation Covariation Patterns in Carcinogenesis (2014) (51)
- Inferring transcriptional regulatory networks from high-throughput data (2007) (51)
- Single cell clustering based on cell‐pair differentiability correlation and variance analysis (2018) (51)
- Impulsive control of stochastic systems with applications in chaos control, chaos synchronization, and neural networks. (2008) (51)
- Identifying responsive functional modules from protein-protein interaction network (2009) (51)
- Dynamical network biomarkers for identifying critical transitions and their driving networks of biologic processes (2013) (50)
- Analysis on multi-domain cooperation for predicting protein-protein interactions (2007) (50)
- Inferring protein interactions from experimental data by association probabilistic method (2006) (50)
- Modelling periodic oscillation in gene regulatory networks by cyclic feedback systems (2005) (49)
- Hunt for the tipping point during endocrine resistance process in breast cancer by dynamic network biomarkers (2018) (47)
- A Network Approach to Predict Pathogenic Genes for Fusarium graminearum (2010) (47)
- Prediction and early diagnosis of complex diseases by edge-network (2014) (46)
- Bistability and Oscillations in Gene Regulation Mediated by Small Noncoding RNAs (2011) (46)
- Optimization meets systems biology (2010) (45)
- Autoreservoir computing for multistep ahead prediction based on the spatiotemporal information transformation (2020) (44)
- Protein structure alignment by deterministic annealing (2005) (44)
- Prediction of S-Glutathionylation Sites Based on Protein Sequences (2013) (43)
- Revealing divergent evolution, identifying circular permutations and detecting active-sites by protein structure comparison (2006) (43)
- Community structure detection based on Potts model and network's spectral characterization (2012) (43)
- Modeling and Analyzing Biological Oscillations in Molecular Networks (2008) (41)
- Partial cross mapping eliminates indirect causal influences (2020) (41)
- Detecting critical state before phase transition of complex biological systems by hidden Markov model (2016) (40)
- Associative memory with a controlled chaotic neural network (2008) (40)
- Transient Resetting: A Novel Mechanism for Synchrony and Its Biological Examples (2006) (40)
- Strange attractors in chaotic neural networks (2000) (40)
- Deep-joint-learning analysis model of single cell transcriptome and open chromatin accessibility data (2020) (40)
- Protein function prediction with high-throughput data (2008) (40)
- A discriminative approach for identifying domain–domain interactions from protein–protein interactions (2010) (39)
- A parsimonious tree-grow method for haplotype inference (2005) (39)
- Neural fate decisions mediated by trans-activation and cis-inhibition in Notch signaling (2011) (39)
- Network screening of Goto-Kakizaki rat liver microarray data during diabetic progression (2011) (39)
- A Systems Biology Perspective on Signal Processing in Genetic Network Motifs [Life Sciences] (2007) (38)
- Stability and bifurcation analysis of differential-difference-algebraic equations (2001) (38)
- Bridging protein local structures and protein functions (2008) (36)
- Proteome-wide prediction of protein-protein interactions from high-throughput data (2012) (34)
- ellipsoidFN: a tool for identifying a heterogeneous set of cancer biomarkers based on gene expressions (2012) (33)
- A network biology study on circadian rhythm by integrating various omics data. (2009) (32)
- Detecting and analyzing differentially activated pathways in brain regions of Alzheimer's disease patients. (2011) (32)
- Single-sample landscape entropy reveals the imminent phase transition during disease progression (2020) (31)
- Periodic oscillation in delayed gene networks with SUM regulatory logic and small perturbations. (2009) (31)
- Biomolecular network querying: a promising approach in systems biology (2008) (30)
- Detecting early‐warning signals of influenza outbreak based on dynamic network marker (2018) (30)
- Identifying critical differentiation state of MCF-7 cells for breast cancer by dynamical network biomarkers (2015) (30)
- Whole-exome sequencing reveals recurrent somatic mutation networks in cancer. (2013) (30)
- A plausible accelerating function of intermediate states in cancer metastasis (2019) (29)
- Quantifying Waddington's epigenetic landscape: a comparison of single-cell potency measures (2018) (29)
- DIPOS: database of interacting proteins in Oryza sativa. (2011) (29)
- Modelling biological systems from molecules to dynamical networks (2012) (28)
- Identifying overlapping communities in social networks using multi-scale local information expansion (2012) (25)
- Designing Gene Regulatory Networks With Specified Functions (2006) (24)
- Detecting thermophilic proteins through selecting amino acid and dipeptide composition features (2012) (24)
- APG: an Active Protein-Gene Network Model to Quantify Regulatory Signals in Complex Biological Systems (2013) (23)
- NOA: a cytoscape plugin for network ontology analysis (2013) (23)
- Predicting local COVID-19 outbreaks and infectious disease epidemics based on landscape network entropy. (2021) (23)
- Predicting gene ontology functions from protein's regional surface structures (2007) (23)
- Automatic Modeling of Signaling Pathways by Network Flow Model (2009) (22)
- Robustness of interval gene networks with multiple time-varying delays and noise (2009) (22)
- Synchronizing a multicellular system by external input: an artificial control strategy (2006) (22)
- Construction of genetic oscillators with interlocked feedback networks. (2006) (21)
- Detecting the tipping points in a three-state model of complex diseases by temporal differential networks (2017) (21)
- Detection of cellular rhythms and global stability within interlocked feedback systems. (2007) (21)
- Clustering-based ℌ2-state aggregation of positive networks and its application to reduction of chemical master equations (2012) (20)
- Towards a critical transition theory under different temporal scales and noise strengths. (2016) (20)
- A mechanism of synchronization in interacting multi-cell genetic systems (2005) (20)
- A computational procedure for identifying master regulator candidates: a case study on diabetes progression in Goto-Kakizaki rats (2012) (19)
- CMIP: a software package capable of reconstructing genome-wide regulatory networks using gene expression data (2016) (19)
- Erratum: Quantitative function for community detection [Phys. Rev. E 77, 036109 (2008)] (2015) (19)
- Protein domain annotation with integration of heterogeneous information sources (2008) (18)
- Identifying module biomarker in type 2 diabetes mellitus by discriminative area of functional activity (2015) (18)
- Deep cross-omics cycle attention model for joint analysis of single-cell multi-omics data (2021) (18)
- Inferring a protein interaction map of Mycobacterium tuberculosis based on sequences and interologs (2012) (18)
- Predicting future dynamics from short-term time series using an Anticipated Learning Machine (2020) (17)
- A Markov chain model for haplotype assembly from SNP fragments. (2006) (17)
- Inferring gene regulatory networks from gene expression data by PC-algorithm based on conditional mutual information (2011) (17)
- Gaussian graphical model for identifying significantly responsive regulatory networks from time course high-throughput data. (2013) (17)
- Predicting Time Series from Short-Term High-Dimensional Data (2014) (16)
- Improved flower pollination algorithm for identifying essential proteins (2018) (16)
- Systems biology for complex diseases. (2012) (16)
- Inferring transcriptional interactions and regulator activities from experimental data. (2007) (16)
- Unique Optimal Foldings of Proteins on a Triangular Lattice (2005) (16)
- Evaluating Protein Similarity from Coarse Structures (2009) (16)
- Exploring Protein's Optimal Hp Configurations by Self-organizing Mapping (2005) (15)
- Computational systems biology in the big data era (2013) (15)
- Dynamical Network Biomarkers: Theory and Applications. (2021) (15)
- Alzheimer's disease classification using features extracted from nonsubsampled contourlet subband-based individual networks (2021) (15)
- Comparison of protein structures by multi-objective optimization. (2005) (15)
- Dynamically dysfunctional protein interactions in the development of Alzheimer's disease (2009) (14)
- Development and assessment of scoring functions for protein identification using PMF data (2007) (14)
- A sequence-based computational approach to predicting PDZ domain-peptide interactions. (2014) (14)
- Systematic computation with functional gene-sets among leukemic and hematopoietic stem cells reveals a favorable prognostic signature for acute myeloid leukemia (2015) (13)
- Computational systems biology: integration of sequence, structure, network, and dynamics (2011) (13)
- A mathematical model of BCR-ABL autophosphorylation, signaling through the CRKL pathway, and Gleevec dynamics in chronic myeloid leukemia (2003) (13)
- Revealing dynamic regulations and the related key proteins of myeloma-initiating cells by integrating experimental data into a systems biological model (2019) (13)
- Detecting direct associations in a network by information theoretic approaches (2018) (13)
- Supervised Inference of Gene Regulatory Networks by Linear Programming (2006) (13)
- Alignment of Protein Interaction Networks by Integer Quadratic Programming (2006) (12)
- Data-based prediction and causality inference of nonlinear dynamics (2017) (12)
- On the robust stability of time‐varying uncertain genetic regulatory networks (2011) (12)
- FGsub: Fusarium graminearum protein subcellular localizations predicted from primary structures (2010) (12)
- Automatic Modeling of Signal Pathways from Protein-Protein Interaction Networks (2007) (12)
- Incremental stability analysis of stochastic hybrid systems (2013) (11)
- Reconstruction of Gene Regulatory Networks (2009) (11)
- Aligning Multiple Protein Structures by Deterministic Annealing (2005) (11)
- Rewiring drug-activated p53-regulatory network from suppressing to promoting tumorigenesis. (2012) (11)
- Intercellular communications induced by random fluctuations. (2004) (10)
- A new method to identify repositioned drugs for prostate cancer (2012) (10)
- Protein function prediction with the shortest path in functional linkage graph and boosting (2008) (10)
- Disease characterization using a partial correlation-based sample-specific network (2020) (10)
- A parameter condition for ruling out multiple equilibria of the photosynthetic carbon metabolism (2011) (10)
- Dynamics-based data science in biology (2021) (10)
- Modeling post-transcriptional regulation activity of small non-coding RNAs in Escherichia coli (2009) (10)
- Fuzzy System Methods in Modeling Gene Expression and Analyzing Protein Networks (2009) (9)
- Analysis of protein surface patterns by pocket similarity network. (2008) (9)
- Identification of Alzheimer's disease based on wavelet transformation energy feature of the structural MRI image and NN classifier (2020) (9)
- Discrimination of outer membrane proteins by a new measure of information discrepancy. (2007) (9)
- Self-organizing map approaches for the haplotype assembly problem (2009) (9)
- Protein cavity clustering based on community structure of pocket similarity network (2008) (8)
- Excitation functions of coupling. (2005) (8)
- Drug repositioning framework by incorporating functional information. (2013) (8)
- Detecting coherent local patterns from time series gene expression data by a temporal biclustering method (2011) (8)
- Correction: Disease-Aging Network Reveals Significant Roles of Aging Genes in Connecting Genetic Diseases (2009) (8)
- Detecting causality from short time-series data based on prediction of topologically equivalent attractors (2017) (8)
- Self-organizing map of complex networks for community detection (2010) (8)
- eFG: an electronic resource for Fusarium graminearum (2013) (7)
- Quantifying pluripotency landscape of cell differentiation from scRNA-seq data by continuous birth-death process (2019) (7)
- Network-based biomarkers for complex diseases. (2014) (7)
- Reinitiation enhances reliable transcriptional responses in eukaryotes (2014) (7)
- Gene Function Prediction with the Shortest Path in Functional Linkage Graph (2007) (7)
- Collective fluctuation implies imminent state transition: Comment on "Dynamic and thermodynamic models of adaptation" by A.N. Gorban et al. (2021) (7)
- Identifying Modules in Complex Networks by a Graph-Theoretical Method and Its Application in Protein Interaction Networks (2009) (6)
- Self-induced Stochastic Resonance in MicroRNA Regulation of a Cancer Network (2010) (6)
- Confidence assessment for protein identification by using peptide‐mass fingerprinting data (2009) (6)
- Integrating data- and model-driven strategies in systems biology (2018) (6)
- Periodic oscillators in genetic networks with negative feedback loops (2004) (6)
- Extracting ROI-Based Contourlet Subband Energy Feature From the sMRI Image for Alzheimer’s Disease Classification (2021) (6)
- Automatic Classification of Protein Structures Based on Convex Hull Representation by Integrated Neural Network (2006) (6)
- Design of genetic switches with only positive feedback loops (2002) (5)
- Bio-network medicine. (2015) (5)
- Multi‐equilibrium property of metabolic networks: Exclusion of multi‐stability for SSN metabolic modules (2011) (5)
- A Linear Programming Framework for Inferring Gene Regulatory Networks by Integrating Heterogeneous Data (2010) (5)
- Associating lncRNAs with small molecules via bilevel optimization reveals cancer-related lncRNAs (2019) (5)
- Detecting Community Structure in Complex Networks by Optimal Rearrangement Clustering (2007) (5)
- SANA: an algorithm for sequential and non-sequential protein structure alignment (2010) (5)
- Exploring the constrained maximum edge-weight connected graph problem (2009) (5)
- Supervised classification of protein structures based on convex hull representation (2007) (4)
- Data-driven systems biology approaches. (2017) (4)
- Criticality in the Healthy Brain (2022) (4)
- Critical transitions and tipping points in EMT (2020) (4)
- Bioinformatics Methods for Protein Identification Using Peptide Mass Fingerprinting (2010) (4)
- Protein domain annotation with predicted domain-domain interaction networks. (2008) (4)
- Prediction and Dissection of Protein-RNA Interactions by Molecular Descriptors. (2015) (4)
- Extracting Community Structure of Complex networks by Self-Organizing Maps (2009) (4)
- Identification of Network Biomarkers for Cancer Diagnosis (2013) (4)
- A new geometric-topological method to measure protein fold similarity (2007) (4)
- Nanodiamonds Interfere with Wnt‐Regulated Cell Migration and Adipocyte Differentiation in Cells and Embryonic Development In Vivo (2017) (4)
- Analysis on steady states of photosynthetic carbon metabolic system (2009) (4)
- Multiple Phase Transitions in the Culture Dissemination (2009) (3)
- Uncovering Driver DNA Methylation Events in Nonsmoking Early Stage Lung Adenocarcinoma (2016) (3)
- Supporting Information S2 (2012) (3)
- Computational Systems Biology on Networks and Dynamics (2007) (3)
- Quantifying Waddington’s epigenetic landscape: a comparison of single-cell potency measures (2018) (3)
- Domain-Domain Interaction Identification with a Feature Selection Approach (2008) (3)
- Systems biology with omics data. (2014) (3)
- The Imbalanced Problem in Mass-spectrometry Data Analysis (2008) (3)
- Inferring Protein-Protein Interactions Based on Sequences and Interologs in Mycobacterium Tuberculosis (2011) (3)
- in silico identification of novel cancer-related genes by comparative genomics of naked mole rat and rat (2012) (3)
- Prediction of Protein–Protein Interactions (2009) (3)
- Advanced Single-cell Omics Technologies and Informatics Tools for Genomics, Proteomics, and Bioinformatics Analysis (2021) (3)
- Transcription Regulation: Networks and Models (2009) (3)
- Multi-equilibrium property of metabolic networks: SSI module (2011) (3)
- Genetic Networks with Stochastic Fluctuations (2003) (3)
- Coupling switches and oscillators as a means to shape cellular signals in biomolecular systems (2013) (3)
- Multiple equilibria in SSN metabolic module (2010) (3)
- Stochastic Hybrid System for Chemical Master Equation (2009) (3)
- Inferring gene regulatory networks from expression data with prior knowledge by linear programming (2010) (3)
- Constrained Subspace Clustering for Time Series Gene Expression Data (2010) (3)
- Limited ability driven phase transitions in the coevolution process in Axelrod's model (2009) (3)
- Inferring Protein-Protein Interactions by Combinatorial Models (2007) (2)
- scDA: Single cell discriminant analysis for single-cell RNA sequencing data (2021) (2)
- Exploring the Classification of Protein Structures on Geometric Patterns by Neural Networks (2006) (2)
- Dynamical modeling of chronic myeloid leukemia progression and the development of mutations (2012) (2)
- A Branch Point on Differentiation Trajectory is the Bifurcating Event Revealed by Dynamical Network Biomarker Analysis of Single-Cell Data (2020) (2)
- Gene Toggle Switches Only with Positive Feedback Loops (2001) (2)
- Dynamics of an HBV Model with Drug Resistance Under Intermittent Antiviral Therapy (2015) (2)
- Attractive Regions in Power Systems by Singular Perturbation Analysis (2005) (2)
- Embedding entropy: a nonlinear measure of dynamical causality (2022) (2)
- Construction and analysis of genome-wide SNP networks (2012) (2)
- Differential network inference via the fused D-trace loss with cross variables (2020) (2)
- Understanding biological systems through the lens of data (2017) (2)
- Motif based identification of pathogenic patterns for filamentous fungi (2008) (2)
- Predicting protein-ligand interactions based on chemical preference features with its application to new D-amino acid oxidase inhibitor discovery. (2014) (2)
- A Gaussian graphical model for identifying significantly responsive regulatory networks from time series gene expression data (2012) (2)
- Establishing Protein Functional Linkage in a Systematic Way (2007) (2)
- Protein Subcellular Localization Prediction for Fusarium graminearum ∗ (2009) (2)
- Special issue on “Analysis and Control of Biological Networks” (2011) (1)
- Identifying joint biomarker panel from multiple level dataset by an optimization model. (2016) (1)
- Topological Structure of Biomolecular Networks (2009) (1)
- Protein Comparison Based on Both Structure and Sequence Data (2007) (1)
- Signaling Networks: Modeling and Inference (2009) (1)
- An integrated gene regulatory network inference pipeline (2011) (1)
- RDAClone: Deciphering Tumor Heterozygosity through Single-Cell Genomics Data Analysis with Robust Deep Autoencoder (2021) (1)
- A dynamical method to extract communities induced by low or middle-degree nodes (2011) (1)
- Elucidating tumor heterogeneity from spatially resolved transcriptomics data by multi-view graph collaborative learning (2022) (1)
- Call for Papers: Special Issue on Systems Biology (2010) (1)
- Design and Implementation of Probability-Based Scoring Function for Peptide Mass Fingerprinting Protein Identification (2006) (1)
- Computational systems biology for omics data analysis (2019) (1)
- Identifying rice arsenic stress response pathways based on molecular interaction network (2012) (1)
- A Network-Based Approach for Identifying Effective Drug Combination (2009) (1)
- An Approach for Clustering Protein Pockets into Similar Groups ∗ (2007) (1)
- Modeling Genetic Network by Differential Equations (2001) (1)
- Reconstructing dynamic gene regulatory network for the development process of hepatocellular carcinoma (2012) (1)
- Detecting disease genes of non-small lung cancer based on consistently differential interactions (2015) (1)
- Protein interaction prediction for mouse pdz domains using dipeptide composition features (2011) (1)
- System identification models for gene regulation system (2010) (1)
- Comparative analysis of protein-coding genes and long non-coding RNAs of prostate cancer between Caucasian and Chinese populations (2012) (1)
- Systems biology intertwines with single cell and AI (2019) (1)
- A fixed-point blind source extraction algorithm and its application to ECG data analysis (2012) (1)
- Assessing Distance Measures for Protein Structure Comparison∗ (2007) (1)
- A New Balanced Ensemble Classifier for Predicting Fungi Protein Subcellular Localization Based on Protein Primary Structures (2009) (1)
- Adaptation of simple molecular networks to time‐dependent stimulus (2011) (1)
- Align Protein Surface Structures to Identify Evolutionally and Structurally Conserved Residues (2009) (1)
- Crosstalk of Dysfunctional Pathways in Alzheimer’s Disease Brains∗ (2009) (1)
- Systems Biology (2011) (1)
- Network biomarker for quantifying regular state of a biological system, and dynamic network biomarker for quantifying critical state of a biological system (2020) (1)
- Transcriptome analysis method based on differential distribution evaluation (2022) (1)
- Optimization and control of metabolic networks (2010) (1)
- Identifying network biomarkers of cancer by sample-specific differential network (2021) (1)
- Synchronizing Independent Gene Oscillators by Common Noisy Signaling Molecule (2007) (1)
- Dynamics of HBV model with intermittent antiviral therapy (2011) (0)
- Editorial (2010) (0)
- Analysis and Design of Gene Switches Composed of Positive Feedback Loops (2000) (0)
- Control of Directed Differentiation by Parameter Perturbations (2010) (0)
- P84.04 HIP1-ALK Positive Non-Small-Cell Lung Cancer: Clinicopathological Characteristics and Prognosis (2021) (0)
- Guest Editorial: Bioinformatics and Computational Systems Biology (2012) (0)
- Nonlinear Analysis of Sampled-data Control Systems (1999) (0)
- Reconstruction of Regulator Activity in E. coli Post-Transcription Processes (2008) (0)
- Deterministic Structures of Biomolecular Networks (2010) (0)
- Gene expression Identifying cancer-related microRNAs based on gene expression data (2015) (0)
- Construction and analysis of single nucleotide polymorphism-single nucleotide polymorphism interaction networks. (2013) (0)
- Guest editorial. Computational systems biology. (2013) (0)
- Analysis of domain interactions among gamma-secretase substrates (2008) (0)
- Dynamical Representations of Molecular Networks (2010) (0)
- Advances in genome informatics. (2010) (0)
- Selected papers from The 7th IEEE international conference on systems Biology (ISB 2013). (2014) (0)
- Combinatorial Optimization in Computational Biology (2008) (0)
- Spice simulation of intracellular transport: Free diffusion (2011) (0)
- Identifying Critical Transitions of Biological Processes by Dynamical Network Biomarkers (2013) (0)
- Supplementary Information : Detecting Pre-disease States by Temporal Differential Network (2017) (0)
- Computational Models for Condition‐Specific Gene and Pathway Inference (2010) (0)
- Detecting critical state before phase transition of complex systems by hidden Markov model (2016) (0)
- Noise-Induced Robust Synchronization in a Multicellular System (2006) (0)
- Synchronizing Biomolecular Networks in Multi-Cell Systems (2008) (0)
- Noise-induced Robust Collective Behaviors in a Multicellular System (2007) (0)
- Corrigendum to: Single-sample landscape entropy reveals the imminent phase transition during disease progression (2020) (0)
- Breakthrough Technologies PPIM : A Protein-Protein Interaction Database for Maize 1 (2016) (0)
- Protein Function Prediction with Data‐Mining Techniques (2010) (0)
- Modeling and Analyzing Biological Oscillations in Molecular Networks Techniques based on dynamical and control theories, for representing the synchronization of signals between cells, can be used to reduce the complexity of modeling biological systems. (2008) (0)
- A Linear Analysis on Robustness in Biochemical Networks (2006) (0)
- Microsoft Word-nwab029.docx (2021) (0)
- Inference of Transcriptional Regulatory Networks (2009) (0)
- Construction of human tissue-specific phosphorylation networks with protein expression data (2013) (0)
- Spatiotemporal convolutional network for time-series prediction and causal inference (2021) (0)
- Multicellular Networks and Synchronization (2010) (0)
- Qualitative Analysis of Deterministic Dynamical Networks (2010) (0)
- Identifying functional motifs on protein surfaces by structural alignment with sequence information (2009) (0)
- Designing oscillators in synthetic gene networks based on multi-scale dynamics (2002) (0)
- Bifurcation analysis of hybrid dynamical systems (1998) (0)
- Traffic jamming in disordered flow distribution networks (2008) (0)
- Designing synthetic biological networks (2006) (0)
- Other Topics and New Trends (2009) (0)
- Metabolic Networks: Analysis, Reconstruction, and Application (2009) (0)
- New Insights into Network Motif Clusters from the Views of Cellular Localizations and Signal Pathways ∗ (2007) (0)
- Systems biology intertwines with single cell and AI (2019) (0)
- Design of Synthetic Oscillating Networks (2010) (0)
- Design of Synthetic Switching Networks (2010) (0)
- Periodic Oscillation in Gene Networks Modelled by Cyclic Feedback Systems (2004) (0)
- Reducing gene regulatory networks by decomposition (2005) (0)
- Alignment of Biomolecular Networks (2009) (0)
- The effect of coupled feedback on noise filtering in signal transduction networks (2010) (0)
- Cooperative dynamics coordinated by stochastic noise in a multi-cell system (2005) (0)
- Designing synthetic biological systems by multiple time scale networks (2004) (0)
- Stability Analysis of Genetic Networks in Lur’e Form (2010) (0)
- Multiscale modeling biological systems. (2016) (0)
- From promise to purpose: Systems biology in cancer and systemic diseases (2017) (0)
- Detecting early-warning signals of critical transitions for complex systems (2016) (0)
- DTMBIO 2014: International Workshop on Data and Text Mining in Biomedical Informatics (2014) (0)
- Network Flow Model Based Analysis of Mouse Hepatocarcinogenesis (2010) (0)
- Frequency Synchronization of a Set of Cells Coupled by Quorum Sensing (2007) (0)
- Network clustering along diabetes progression in three tissues of Goto-Kakizaki rats (2012) (0)
- A linear programming model for identifying non-redundant biomarkers based on gene expression profiles (2011) (0)
- Guest Editorial for Special Section on ISB/TBC 2014 (2015) (0)
- Uncover the Transient Transcriptional Regulations by a Novel Sliding Window Correlation Strategy (2010) (0)
- The early warning signal of complex diseases based on the network transition entropy (2011) (0)
- DTMBIO 2014 chairs' welcome (2014) (0)
- A hybrid model for hepatitis B virus (2015) (0)
- Identification of overlapping communities in protein interaction networks using multi-scale local information expansion (2012) (0)
- Database tool eFG: an electronic resource for Fusarium graminearum (2013) (0)
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