Mark D. Robinson
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Engineering Computer Science
Mark D. Robinson's Degrees
- PhD Computer Science Stanford University
- Masters Electrical Engineering University of California, Berkeley
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(Suggest an Edit or Addition)Mark D. Robinson's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- edgeR: a Bioconductor package for differential expression analysis of digital gene expression data (2009) (27126)
- Comprehensive genomic characterization defines human glioblastoma genes and core pathways (2008) (5775)
- A scaling normalization method for differential expression analysis of RNA-seq data (2010) (5704)
- Global landscape of protein complexes in the yeast Saccharomyces cerevisiae (2006) (2968)
- Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences (2016) (1753)
- Differential analyses for RNA-seq: transcript-level estimates improve gene-level inferences. (2015) (1283)
- Small-sample estimation of negative binomial dispersion, with applications to SAGE data. (2007) (1029)
- Count-based differential expression analysis of RNA sequencing data using R and Bioconductor (2013) (1009)
- Large-scale mapping of human protein–protein interactions by mass spectrometry (2007) (988)
- Moderated statistical tests for assessing differences in tag abundance (2007) (872)
- From RNA-seq reads to differential expression results (2010) (711)
- Eleven grand challenges in single-cell data science (2020) (553)
- Bias, robustness and scalability in single-cell differential expression analysis (2018) (492)
- High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy (2018) (487)
- FunSpec: a web-based cluster interpreter for yeast (2002) (446)
- ESHRE PGD Consortium 'Best practice guidelines for clinical preimplantation genetic diagnosis (PGD) and preimplantation genetic screening (PGS)'. (2005) (406)
- High-definition macromolecular composition of yeast RNA-processing complexes. (2004) (392)
- Large-scale prediction of Saccharomyces cerevisiae gene function using overlapping transcriptional clusters (2002) (373)
- Genome-Wide Analysis of mRNA Stability Using Transcription Inhibitors and Microarrays Reveals Posttranscriptional Control of Ribosome Biogenesis Factors (2004) (360)
- The functional landscape of mouse gene expression (2004) (341)
- Robustly detecting differential expression in RNA sequencing data using observation weights (2013) (339)
- Comparison of clustering methods for high‐dimensional single‐cell flow and mass cytometry data (2016) (276)
- A Panoramic View of Yeast Noncoding RNA Processing (2003) (269)
- ALT-803, an IL-15 superagonist, in combination with nivolumab in patients with metastatic non-small cell lung cancer: a non-randomised, open-label, phase 1b trial. (2018) (250)
- Treatment of a metabolic liver disease by in vivo genome base editing in adult mice (2018) (244)
- The synthetic genetic interaction spectrum of essential genes (2005) (235)
- Maximizing mutagenesis with solubilized CRISPR-Cas9 ribonucleoprotein complexes (2016) (220)
- Reconstructing an Ancestral Mammalian Immune Supercomplex from a Marsupial Major Histocompatibility Complex (2006) (213)
- Compensation of Signal Spillover in Suspension and Imaging Mass Cytometry (2018) (201)
- Isothermal whole genome amplification from single and small numbers of cells: a new era for preimplantation genetic diagnosis of inherited disease. (2004) (195)
- Identifying transcription factor functions and targets by phenotypic activation (2006) (195)
- Comparison of methyl-DNA immunoprecipitation (MeDIP) and methyl-CpG binding domain (MBD) protein capture for genome-wide DNA methylation analysis reveal CpG sequence coverage bias (2011) (191)
- edgeR for differential RNA-seq and ChIP-seq analysis: an application to stem cell biology. (2014) (189)
- CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets (2017) (186)
- Regional activation of the cancer genome by long-range epigenetic remodeling. (2013) (185)
- Consolidation of the cancer genome into domains of repressive chromatin by long-range epigenetic silencing (LRES) reduces transcriptional plasticity (2010) (184)
- Acetylation of H2A.Z is a key epigenetic modification associated with gene deregulation and epigenetic remodeling in cancer. (2012) (178)
- Bisulfite sequencing of chromatin immunoprecipitated DNA (BisChIP-seq) directly informs methylation status of histone-modified DNA (2012) (173)
- CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets. (2017) (157)
- T cell acute leukaemia exhibits dynamic interactions with bone marrow microenvironments (2016) (153)
- A systematic performance evaluation of clustering methods for single-cell RNA-seq data. (2018) (143)
- Methylome sequencing in triple-negative breast cancer reveals distinct methylation clusters with prognostic value (2015) (143)
- A systematic performance evaluation of clustering methods for single-cell RNA-seq data. (2018) (140)
- BAZ2A (TIP5) is involved in epigenetic alterations in prostate cancer and its overexpression predicts disease recurrence (2014) (136)
- muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data (2020) (134)
- Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications (2018) (133)
- A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes (2019) (133)
- FIRMA: a method for detection of alternative splicing from exon array data (2008) (129)
- Microbiota-derived hydrogen fuels Salmonella typhimurium invasion of the gut ecosystem. (2013) (125)
- CrispRVariants charts the mutation spectrum of genome engineering experiments (2016) (123)
- High-resolution genetic mapping with ordered arrays of Saccharomyces cerevisiae deletion mutants. (2002) (119)
- Evaluation of affinity-based genome-wide DNA methylation data: effects of CpG density, amplification bias, and copy number variation. (2010) (117)
- Statistical methods for detecting differentially methylated loci and regions (2014) (108)
- TCF/LEF dependent and independent transcriptional regulation of Wnt/β‐catenin target genes (2018) (108)
- Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage (2016) (107)
- Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair (2018) (104)
- DRIMSeq: a Dirichlet-multinomial framework for multivariate count outcomes in genomics (2016) (101)
- The exon 13 duplication in the BRCA1 gene is a founder mutation present in geographically diverse populations. The BRCA1 Exon 13 Duplication Screening Group. (2000) (96)
- Male sex in houseflies is determined by Mdmd, a paralog of the generic splice factor gene CWC22 (2017) (95)
- Australian snowboard injury data base study (1993) (93)
- Doublet identification in single-cell sequencing data using scDblFinder (2021) (90)
- Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens (2014) (90)
- Essential guidelines for computational method benchmarking (2018) (88)
- High-dimensional single-cell analysis reveals the immune signature of narcolepsy (2016) (85)
- diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering (2019) (82)
- Discovery pipeline for epigenetically deregulated miRNAs in cancer: integration of primary miRNA transcription (2011) (80)
- diffcyt: Differential discovery in high-dimensional cytometry via high-resolution clustering (2018) (78)
- A dynamic programming approach for the alignment of signal peaks in multiple gas chromatography-mass spectrometry experiments (2007) (75)
- A comparison of Affymetrix gene expression arrays (2007) (75)
- RNA Sequencing Data: Hitchhiker's Guide to Expression Analysis (2018) (72)
- CyTOF workflow: differential discovery in high-throughput high-dimensional cytometry datasets. (2019) (72)
- stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage (2017) (69)
- Repitools: an R package for the analysis of enrichment-based epigenomic data (2010) (66)
- Maleness-on-the-Y (MoY) orchestrates male sex determination in major agricultural fruit fly pests (2019) (64)
- A systematic performance evaluation of clustering methods for single-cell RNA-seq data (2020) (64)
- Transcriptional networks: reverse-engineering gene regulation on a global scale. (2004) (62)
- Low fitness, low body mass and prior injury predict injury risk during military recruit training: a prospective cohort study in the British Army (2016) (62)
- Origin and differentiation trajectories of fibroblastic reticular cells in the splenic white pulp (2019) (60)
- Directed shotgun proteomics guided by saturated RNA-seq identifies a complete expressed prokaryotic proteome (2013) (58)
- Abscisic acid is a substrate of the ABC transporter encoded by the durable wheat disease resistance gene Lr34 (2019) (57)
- Tandem repeat variation in human and great ape populations and its impact on gene expression divergence (2015) (57)
- The hematopoietic oncoprotein FOXP1 promotes tumor cell survival in diffuse large B-cell lymphoma by repressing S1PR2 signaling. (2016) (56)
- Loss of the Notch effector RBPJ promotes tumorigenesis (2014) (56)
- DUSP4 deficiency caused by promoter hypermethylation drives JNK signaling and tumor cell survival in diffuse large B cell lymphoma (2015) (55)
- Circulating neutrophil subsets in advanced lung cancer patients exhibit unique immune signature and relate to prognosis (2020) (54)
- The promise of functional genomics: completing the encyclopedia of a cell. (2004) (54)
- Pro-inflammatory Aorta-Associated Macrophages Are Involved in Embryonic Development of Hematopoietic Stem Cells (2019) (53)
- An integrative strategy to identify the entire protein coding potential of prokaryotic genomes by proteogenomics (2017) (52)
- Genome-wide analysis of mouse transcripts using exon microarrays and factor graphs (2005) (51)
- A unique enhancer boundary complex on the mouse ribosomal RNA genes persists after loss of Rrn3 or UBF and the inactivation of RNA polymerase I transcription (2017) (50)
- expression analysis of digital gene expression data (2010) (44)
- pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing tools (2020) (44)
- Differential Gene Expression in the Siphonophore Nanomia bijuga (Cnidaria) Assessed with Multiple Next-Generation Sequencing Workflows (2011) (44)
- Protocol matters: which methylome are you actually studying? (2010) (43)
- Epigenetic silencing of monoallelically methylated miRNA loci in precancerous colorectal lesions (2013) (42)
- Common Features of Regulatory T Cell Specialization During Th1 Responses (2018) (40)
- Highly efficient DNA-free gene disruption in the agricultural pest Ceratitis capitata by CRISPR-Cas9 ribonucleoprotein complexes (2017) (40)
- On the discovery of subpopulation-specific state transitions from multi-sample multi-condition single-cell RNA sequencing data (2019) (39)
- iCOBRA: open, reproducible, standardized and live method benchmarking (2015) (38)
- Fibroblastic reticular cells initiate immune responses in visceral adipose tissues and secure peritoneal immunity (2018) (36)
- CD8+ T cells retain protective functions despite sustained inhibitory receptor expression during Epstein-Barr virus infection in vivo (2019) (35)
- Towards unified quality verification of synthetic count data with countsimQC (2017) (33)
- Preliminary evidence of an association between HLA-DPB1*0201 and childhood common acute lymphoblastic leukaemia supports an infectious aetiology. (1995) (31)
- BayMeth: improved DNA methylation quantification for affinity capture sequencing data using a flexible Bayesian approach (2013) (30)
- miRNA-Seq normalization comparisons need improvement. (2013) (29)
- Relationship between genome and epigenome - challenges and requirements for future research (2014) (28)
- Definition and characterization of a "trypsinosome" from specific peptide characteristics by nano-HPLC-MS/MS and in silico analysis of complex protein mixtures. (2004) (26)
- Copy-number-aware differential analysis of quantitative DNA sequencing data (2012) (25)
- DNA methylation profiles of elderly individuals subjected to indentured childhood labor and trauma (2017) (25)
- Coordinated epigenetic remodelling of transcriptional networks occurs during early breast carcinogenesis (2015) (25)
- Molecular analysis of HLA-DQB1 alleles in childhood common acute lymphoblastic leukaemia. (1996) (25)
- Test-retest reliability of the Military Pre-training Questionnaire. (2010) (23)
- Non-parent of Origin Expression of Numerous Effector Genes Indicates a Role of Gene Regulation in Host Adaption of the Hybrid Triticale Powdery Mildew Pathogen (2018) (23)
- De novo assembly and sex-specific transcriptome profiling in the sand fly Phlebotomus perniciosus (Diptera, Phlebotominae), a major Old World vector of Leishmania infantum (2015) (23)
- Wnt inhibitory factor 1 (WIF1) is a marker of osteoblastic differentiation stage and is not silenced by DNA methylation in osteosarcoma. (2015) (23)
- Bias, robustness and scalability in differential expression analysis of single-cell RNA-seq data (2017) (23)
- ARMOR: An Automated Reproducible MOdular Workflow for Preprocessing and Differential Analysis of RNA-seq Data (2019) (21)
- A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs (2018) (21)
- Exon deletions and duplications in BRCA1 detected by semiquantitative PCR. (2000) (21)
- The Spinal Transcriptome after Cortical Stroke: In Search of Molecular Factors Regulating Spontaneous Recovery in the Spinal Cord (2019) (20)
- Synaptic FUS accumulation triggers early misregulation of synaptic RNAs in a mouse model of ALS (2021) (19)
- DRIMSeq: a Dirichlet-multinomial framework for multivariate count outcomes in genomics. (2016) (19)
- Differential splicing using whole-transcript microarrays (2009) (19)
- Author Correction: High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy (2018) (19)
- Are Epigenetic Factors Implicated in Chronic Widespread Pain? (2016) (19)
- TNFR2 induced priming of the inflammasome leads to a RIPK1-dependent cell death in the absence of XIAP (2019) (18)
- zingeR: unlocking RNA-seq tools for zero-inflation and single cell applications (2017) (17)
- The hematopoietic oncoprotein FOXP 1 promotes tumor cell survival in diffuse large B-cell lymphoma by repressing S 1 PR 2 signaling (2016) (17)
- Small RNA-seq analysis of single porcine blastocysts revealed that maternal estradiol-17beta exposure does not affect miRNA isoform (isomiR) expression (2018) (16)
- pipeComp, a general framework for the evaluation of computational pipelines, reveals performant single cell RNA-seq preprocessing tools (2020) (15)
- Differential Expression for RNA Sequencing (RNA-Seq) Data: Mapping, Summarization, Statistical Analysis, and Experimental Design (2012) (15)
- Differential Expression for RNA Sequencing (RNA-Seq) Data: Mapping, Summarization, Statistical Analysis, and Experimental Design (2012) (15)
- Differential Expression for RNA Sequencing (RNA-Seq) Data: Mapping, Summarization, Statistical Analysis, and Experimental Design (2012) (15)
- BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty (2019) (14)
- CellMixS: quantifying and visualizing batch effects in single-cell RNA-seq data (2020) (14)
- Mammalian Annotation Database for improved annotation and functional classification of Omics datasets from less well-annotated organisms (2019) (14)
- An R-based reproducible and user-friendly preprocessing pipeline for CyTOF data (2020) (13)
- The proto CpG island methylator phenotype of sessile serrated adenomas/polyps (2018) (13)
- ARMOR: an Automated Reproducible MOdular workflow for preprocessing and differential analysis of RNA-seq data (2019) (12)
- Active receptor tyrosine kinases, but not Brachyury, are sufficient to trigger chordoma in zebrafish (2018) (12)
- 12 Grand Challenges in Single-Cell Data Science (2019) (12)
- The DNA hypermethylation phenotype of colorectal cancer liver metastases resembles that of the primary colorectal cancers (2019) (11)
- Comparison of enzyme mismatch cleavage and chemical cleavage of mismatch on a defined set of heteroduplexes. (1997) (11)
- treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses (2020) (11)
- Built on sand: the shaky foundations of simulating single-cell RNA sequencing data (2021) (10)
- Hand2 delineates mesothelium progenitors and is reactivated in mesothelioma (2020) (10)
- Faithful mRNA splicing depends on the Prp19 complex subunit faint sausage and is required for tracheal branching morphogenesis in Drosophila (2017) (9)
- DAMEfinder: a method to detect differential allele-specific methylation (2019) (9)
- Gene expression edgeR : a Bioconductor package for differential expression analysis of digital gene expression data (2009) (8)
- TreeSummarizedExperiment: a S4 class for data with hierarchical structure (2021) (8)
- Observation weights unlock bulk RNA-seq tools for zero inflation and single-cell applications (2018) (8)
- Single nuclei RNAseq stratifies multiple sclerosis patients into three distinct white matter glia responses (2022) (8)
- Computational epigenomics: challenges and opportunities (2015) (8)
- Occupant injury risk assessment and protective measures in frontal collision of a bus (2018) (8)
- Differential transcript usage from RNA-seq data: isoform pre-filtering improves performance of count-based methods (2015) (7)
- ReSeq simulates realistic Illumina high-throughput sequencing data (2020) (7)
- Benchmarking comes of age (2019) (7)
- MiR-CLIP reveals iso-miR selective regulation in the miR-124 targetome (2020) (6)
- stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage (2017) (6)
- An Optimized Tissue Dissociation Protocol for Single-Cell RNA Sequencing Analysis of Fresh and Cultured Human Skin Biopsies (2022) (6)
- Phase I Trial Characterizing the Pharmacokinetic Profile of N-803, a Chimeric IL-15 Superagonist, in Healthy Volunteers (2022) (6)
- CWL Viewer: The Common Workflow Language Viewer (2017) (6)
- Human neural networks with sparse TDP-43 pathology reveal NPTX2 misregulation in ALS/FTLD (2021) (6)
- Finding Novel Transcripts in High-Resolution Genome-Wide Microarray Data Using the GenRate Model (2005) (6)
- SampleQC: robust multivariate, multi-cell type, multi-sample quality control for single-cell data (2021) (5)
- Analysis of Next Generation Sequencing Data Using Integrated Nested Laplace Approximation (INLA) (2014) (5)
- Comparison of Clustering Methods for High-Dimensional Single-Cell Flow and Mass Cytometry Data (2016) (4)
- distinct: a novel approach to differential distribution analyses (2020) (4)
- TreeSummarizedExperiment: a S4 class for data with hierarchical structure. (2020) (4)
- Do count-based differential expression methods perform poorly when genes are expressed in only one condition? (2015) (4)
- ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw (2020) (4)
- Targeting the autosomal Ceratitis capitata transformer gene using Cas9 or dCas9 to masculinize XX individuals without inducing mutations (2020) (4)
- Shedding Light on the Transcriptomic Dark Matter in Biological Psychiatry: Role of Long Noncoding RNAs in D-cycloserine-Induced Fear Extinction in Posttraumatic Stress Disorder. (2020) (4)
- ReSeq simulates realistic Illumina high-throughput sequencing data (2021) (4)
- MyMed: A database system for biomedical research on MEDLINE data (2004) (3)
- CrispRVariants: precisely charting the mutation spectrum in genome engineering experiments (2016) (3)
- Highly efficient DNA-free gene disruption in the agricultural pest Ceratitis capitata by CRISPR-Cas9 RNPs (2017) (2)
- Author response: Covalent linkage of the DNA repair template to the CRISPR-Cas9 nuclease enhances homology-directed repair (2018) (2)
- TNFR2 induced priming of NLRP3-inflammasome via RIPK1 leads to pyroptosis in XIAP deficient cells (2019) (2)
- Intravital Microscopy Reveals Fundamental Differences in the Interaction of Stem Cells and T Acute Lymphoblastic Leukaemia with the Bone Marrow Microenvironment (2016) (2)
- A general and powerful stage-wise testing procedure for differential expression and differential transcript usage (2017) (2)
- Synaptic accumulation of FUS triggers age-dependent misregulation of inhibitory synapses in ALS-FUS mice (2020) (2)
- Reconstructing an Ancestral MammalianImmune Supercomplex from a Marsupial MajorHistocompatibility Complex (2006) (2)
- A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells (2021) (2)
- A comprehensive single-cell atlas of freshly dissociated human synovium in inflammatory arthritis with an optimized dissociation protocol for prospective fresh synovial biopsy collection (2022) (1)
- BayMeth: improved DNA methylation quantification for affinity capture sequencing data using a flexible Bayesian approach (2014) (1)
- Mass cytometric and transcriptomic profiling of epithelial-mesenchymal transitions in human mammary cell lines (2022) (1)
- BANDITS: Bayesian differential splicing accounting for sample-to-sample variability and mapping uncertainty (2020) (1)
- The shaky foundations of simulating single-cell RNA sequencing data (2023) (1)
- treeclimbR pinpoints the data-dependent resolution of hierarchical hypotheses (2021) (1)
- Gapless provides combined scaffolding, gap filling and assembly correction with long reads (2023) (1)
- Eleven grand challenges in single-cell data science (2020) (1)
- Year : 2013 miRNA-Seq normalization comparisons need improvement (2017) (1)
- 5-1-2018 ALT-803 , an IL-15 superagonist , in combination with nivolumab in patients with metastatic non-small cell lung cancer : a non-randomised , open-label , phase 1 b trial (2018) (1)
- Abstract 566: High dimensional single cell analysis predicts response to anti-PD-1 immunotherapy (2018) (1)
- TAR Syndrome-associated Rbm8a deficiency causes hematopoietic defects and attenuates Wnt/PCP signaling (2023) (1)
- Channel crosstalk correction in suspension and imaging mass cytometry (2017) (1)
- Isoform prefiltering improves performance of count-based methods for analysis of differential transcript usage (2016) (1)
- Abstract 4225: Is biomarker-driven precision medicine possible by using high dimensional augmented intelligence assisted analysis of cancer immune responses (2019) (1)
- Mass cytometric and transcriptomic profiling of epithelial-mesenchymal transitions in human mammary cell lines (2021) (1)
- of digital gene expression data User's Guide (2012) (1)
- A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells (2020) (1)
- Feature Identification Framework for Back Injury Risk in Repetitive Work With Application in Sheep Shearing (2022) (1)
- Biomarker prediction to anti-PD-1 immunotherapy by using high dimensional single cell analysis (2018) (1)
- Pre-implantation genetic diagnosis using whole genome amplification (2005) (1)
- An R-based reproducible and user-friendly preprocessing pipeline for CyTOF data. (2020) (1)
- Complement downregulation promotes an inflammatory signature that renders colorectal cancer susceptible to immunotherapy (2022) (1)
- Loss of C3aR induces immune infiltration and inflammatory microbiota in a new spontaneous model of colon cancer (2021) (0)
- ARPEGGIO: Automated Reproducible Polyploid EpiGenetic GuIdance workflOw (2021) (0)
- Supervised spatial inference of dissociated single-cell data with SageNet (2022) (0)
- DAMEfinder: a method to detect differential allele-specific methylation (2020) (0)
- Common Workflow Language Viewer: (Talk) (2017) (0)
- Do count-based differential expression methods perform poorly when genes are expressed in only one condition? (2015) (0)
- Censcyt: censored covariates in differential abundance analysis in cytometry (2020) (0)
- Correction to: A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells (2022) (0)
- The DNA hypermethylation phenotype of colorectal cancer liver metastases resembles that of the primary colorectal cancers (2020) (0)
- A collection of ChIP-seq analyses : exploration , relating signal to gene expression , region finding and differential analyses , relating regions to annotation (2013) (0)
- Abstracts (2009) (0)
- British Army training : a prospective cohort study in the predict injury risk during military recruit Low fitness , low body mass and prior injury (2016) (0)
- Advanced Trauma Life Support for the MRCS (2021) (0)
- Epidemiology of lifestyle behaviours and training injuries in British Army infantry recruits (2015) (0)
- Human neural networks with sparse TDP-43 pathology reveal NPTX 2 misregulation in 1 ALS / FTLD 2 3 (2021) (0)
- Treatment of a metabolic liver disease by in vivo genome base editing in adult mice (2018) (0)
- Censcyt: censored covariates in differential abundance analysis in cytometry (2021) (0)
- pubassistant.ch: consolidating publication profiles of researchers. (2021) (0)
- pubassistant.ch: consolidating publication profiles of researchers [version 1; peer review: 1 not approved] (2021) (0)
- Origin and differentiation trajectories of fibroblastic reticular cells in the splenic white pulp (2019) (0)
- Essential guidelines for computational method benchmarking (2019) (0)
- Highly efficient DNA-free gene disruption in the agricultural pest Ceratitis capitata by CRISPR-Cas9 ribonucleoprotein complexes (2017) (0)
- pubassistant.ch: consolidating publication profiles of researchers (2022) (0)
- benchmarkR: an R package for benchmarking genome-scale methods (2015) (0)
- pubassistant.ch: consolidating publication profiles of researchers. (2021) (0)
- Author Correction: High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy (2018) (0)
- Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability (2023) (0)
- Correction: TNFR2 induced priming of the inflammasome leads to a RIPK1-dependent cell death in the absence of XIAP (2020) (0)
- A new bioinformatic pipeline allows the design of small, targeted gene panels for efficient TMB estimation. (2019) (0)
- PSAI_A_133853 21..21 ++ (2005) (0)
- distinct: a method for differential analyses via hierarchical permutation tests, with applications to single-cell data (2020) (0)
- LincRNAs involved in DCS-induced fear extinction: Shedding light on the transcriptomic dark matter (2019) (0)
- Epigenomics – Part 1: Intro to Epigene/cs – Part 2: Computa4onal Methods (2012) (0)
- Methode de conversion de voies d'acces a un reservoir (2001) (0)
- Benchmarking comes of age (2019) (0)
- Chromothripsis-like patterns are recurring but heterogeneously distributed features in a survey of 22,347 cancer genome screens (2014) (0)
- Chromothripsis-like patterns are recurring, but heterogeneously distributed features in cancer: A survey of 22, 347 genomic copy number profiles (2013) (0)
- Doublet identification in single-cell sequencing data using scDblFinder. (2021) (0)
- Genomics by the beach (2014) (0)
- Copy-number-aware differential analysis of (2012) (0)
- Disentangling tumorigenesis-associated DNA methylation changes in colorectal tissues from those associated with ageing (2021) (0)
- Bouldnor Cliff II: a window into the Mesolithic landscape (2011) (0)
- High dimensional analysis of immune signatures in melanoma patients (2017) (0)
- ReSequenceR: Simulating more realistic high-throughput sequencing data (2017) (0)
- Generation of transcript counts from pasilla dataset with kallisto (2016) (0)
- Additional file 2 — Supplementary figures and tables (2014) (0)
- DESpace: spatially variable gene detection via differential expression testing of spatial clusters (2023) (0)
- Correction to: A cis-regulatory element promoting increased transcription at low temperature in cultured ectothermic Drosophila cells (2022) (0)
- CWL Viewer v1.0: common-workflow-language/cwlviewer (2017) (0)
- Correction: TNFR2 induced priming of the inflammasome leads to a RIPK1-dependent cell death in the absence of XIAP (2020) (0)
- Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data (2022) (0)
- H3K4me3 enrichment defines neuronal age, while a youthful H3K27ac signature is recapitulated in aged neurons (2021) (0)
- fionarhuang/TreeSummarizedExperiment: v1.4.8 TreeSummarizedExperiment (2020) (0)
- DRIMSeq : Dirichlet-multinomial framework for differential transcript usage and transcript usage QTL analyses in RNA-seq (2017) (0)
- Coordinated epigenetic remodelling of transcriptional networks occurs during early breast carcinogenesis (2015) (0)
- Abstract IA09: Using high-dimensional machine-assisted analysis for biomarkers detection and guidance of immunotherapy to cancer (2020) (0)
- identifies a complete expressed prokaryotic proteome Directed shotgun proteomics guided by saturated RNA-seq Material (2017) (0)
- Small RNA-seq analysis of single porcine blastocysts revealed that maternal estradiol-17beta exposure does not affect miRNA isoform (isomiR) expression (2018) (0)
- The structure of yeast Npl3 bound to RNA reveals a cooperative sequence-specific recognition and an RNA chaperone role in splicing (2022) (0)
- Complement C3aR loss drives colorectal cancer by modulating gut microbiota (2020) (0)
- Deep neural networks predict drug-induced histopathology based on gene expression (2019) (0)
- transcript usage from RNA-seq data: isoform pre-ltering improves performance of count-based methods (2015) (0)
- DRIMSeq : Dirichlet-multinomial framework for differential splicing and sQTL analyses in RNA-seq (2016) (0)
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Mark D. Robinson is affiliated with the following schools:
