Mark Hochstrasser
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Biophysics researcher
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Physics
Mark Hochstrasser's Degrees
- PhD Biophysics University of California, Berkeley
- Masters Physics Stanford University
- Bachelors Physics Stanford University
Why Is Mark Hochstrasser Influential?
(Suggest an Edit or Addition)According to Wikipedia, Mark Hochstrasser is an American biologist, currently the Eugene Higgins Professor of Molecular Biophysics and Biochemistry and Professor of Molecular, Cellular, and Developmental Biology at Yale University. Hochstrasser's research group has made many important contributions to our understanding of eukaryotic cell biology, particularly discoveries on the ubiquitin-proteasome system and the small ubiquitin-like modifier protein.
Mark Hochstrasser's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Ubiquitin-dependent protein degradation. (1996) (1769)
- Modification of proteins by ubiquitin and ubiquitin-like proteins. (2006) (1545)
- Quantitative Proteomics Reveals the Function of Unconventional Ubiquitin Chains in Proteasomal Degradation (2009) (1104)
- Mechanism and function of deubiquitinating enzymes. (2004) (924)
- Ubiquitin, proteasomes, and the regulation of intracellular protein degradation. (1995) (840)
- Guidelines for the use and interpretation of assays for monitoring autophagy (4th edition)1 (2021) (811)
- Diversity of degradation signals in the ubiquitin–proteasome system (2008) (760)
- Origin and function of ubiquitin-like proteins (2009) (753)
- A new protease required for cell-cycle progression in yeast (1999) (753)
- Function and regulation of SUMO proteases (2012) (516)
- A conserved ubiquitin ligase of the nuclear envelope/endoplasmic reticulum that functions in both ER-associated and Matalpha2 repressor degradation. (2001) (472)
- Substrate Targeting in the Ubiquitin System (1999) (469)
- A superfamily of protein tags: ubiquitin, SUMO and related modifiers. (2003) (409)
- Evolution and function of ubiquitin-like protein-conjugation systems (2000) (404)
- Multiple ubiquitin-conjugating enzymes participate in the in vivo degradation of the yeast MATα2 repressor (1993) (400)
- The yeast DOA4 gene encodes a deubiquitinating enzyme related to a product of the human tre-2 oncogene (1993) (400)
- Defining the SUMO-modified Proteome by Multiple Approaches in Saccharomyces cerevisiae* (2005) (398)
- Autocatalytic Subunit Processing Couples Active Site Formation in the 20S Proteasome to Completion of Assembly (1996) (387)
- The Yeast ULP2 (SMT4) Gene Encodes a Novel Protease Specific for the Ubiquitin-Like Smt3 Protein (2000) (374)
- Molecular architecture and assembly of the eukaryotic proteasome. (2013) (339)
- The Doa4 deubiquitinating enzyme is required for ubiquitin homeostasis in yeast. (1999) (313)
- The Doa4 deubiquitinating enzyme is functionally linked to the vacuolar protein-sorting and endocytic pathways. (2000) (310)
- SP-RING for SUMO New Functions Bloom for a Ubiquitin-like Protein (2001) (307)
- Protein Degradation or Regulation: Ub the Judge (1996) (290)
- Identification of the yeast 20S proteasome catalytic centers and subunit interactions required for active-site formation. (1997) (285)
- Lingering Mysteries of Ubiquitin-Chain Assembly (2006) (276)
- Spatial organization of chromosomes in the salivary gland nuclei of Drosophila melanogaster (1986) (275)
- Distinct Machinery Is Required in Saccharomyces cerevisiae for the Endoplasmic Reticulum-associated Degradation of a Multispanning Membrane Protein and a Soluble Luminal Protein* (2004) (268)
- Membrane and soluble substrates of the Doa10 ubiquitin ligase are degraded by distinct pathways (2006) (264)
- In vivo disassembly of free polyubiquitin chains by yeast Ubp14 modulates rates of protein degradation by the proteasome (1997) (251)
- A Wolbachia Deubiquitylating Enzyme Induces Cytoplasmic Incompatibility (2017) (249)
- The Yeast Hex3·Slx8 Heterodimer Is a Ubiquitin Ligase Stimulated by Substrate Sumoylation* (2007) (222)
- Proteasome Structure and Assembly. (2017) (218)
- In vivo degradation of a transcriptional regulator: The yeast α2 repressor (1990) (214)
- Degradation Signal Masking by Heterodimerization of MATα2 and MATa1 Blocks Their Mutual Destruction by the Ubiquitin-Proteasome Pathway (1998) (213)
- Epitope-tagged ubiquitin. A new probe for analyzing ubiquitin function. (1991) (211)
- Analysis of the Deubiquitinating Enzymes of the Yeast Saccharomyces cerevisiae (2000) (208)
- The short-lived MAT alpha 2 transcriptional regulator is ubiquitinated in vivo. (1991) (202)
- Autoregulation of an E2 enzyme by ubiquitin-chain assembly on its catalytic residue (2007) (175)
- Characteristic folding pattern of polytene chromosomes in Drosophila salivary gland nuclei (1984) (175)
- DUB-1, a deubiquitinating enzyme with growth-suppressing activity. (1996) (169)
- Multiple Assembly Chaperones Govern Biogenesis of the Proteasome Regulatory Particle Base (2009) (166)
- Spatially regulated ubiquitin ligation by an ER/nuclear membrane ligase (2006) (162)
- Heterohexameric ring arrangement of the eukaryotic proteasomal ATPases: implications for proteasome structure and assembly. (2010) (159)
- A multimeric assembly factor controls the formation of alternative 20S proteasomes (2008) (152)
- Eukaryotic 20S proteasome catalytic subunit propeptides prevent active site inactivation by N‐terminal acetylation and promote particle assembly (1999) (146)
- Interaction of the Doa4 deubiquitinating enzyme with the yeast 26S proteasome. (1999) (145)
- Membrane Topology of the Yeast Endoplasmic Reticulum-localized Ubiquitin Ligase Doa10 and Comparison with Its Human Ortholog TEB4 (MARCH-VI)* (2006) (144)
- β‐Subunit appendages promote 20S proteasome assembly by overcoming an Ump1‐dependent checkpoint (2007) (139)
- Rtt106p is a histone chaperone involved in heterochromatin-mediated silencing. (2005) (126)
- Unified nomenclature for subunits of the Saccharomyces cerevisiae proteasome regulatory particle. (1998) (123)
- There's the rub: a novel ubiquitin-like modification linked to cell cycle regulation. (1998) (122)
- Three-dimensional organization of Drosophila melanogaster interphase nuclei. I. Tissue-specific aspects of polytene nuclear architecture (1987) (119)
- Biogenesis, structure and function of the yeast 20S proteasome. (1995) (119)
- Three-dimensional organization of Drosophila melanogaster interphase nuclei. II. Chromosome spatial organization and gene regulation (1987) (116)
- Molecular organization of the 20S proteasome gene family from Arabidopsis thaliana. (1998) (112)
- The Ulp1 SUMO isopeptidase (2003) (105)
- All in the Ubiquitin Family (2000) (105)
- Sem1, the yeast ortholog of a human BRCA2-binding protein, is a component of the proteasome regulatory particle that enhances proteasome stability (2004) (101)
- A nuclear envelope protein linking nuclear pore basket assembly, SUMO protease regulation, and mRNA surveillance (2007) (98)
- In vivo degradation of a transcriptional regulator: the yeast alpha 2 repressor. (1990) (98)
- Properties of the T4 bacteriophage DNA replication apparatus: The T4 dda DNA helicase is required to pass a bound RNA polymerase molecule (1983) (96)
- Small epitope-linker modules for PCR-based C-terminal tagging in Saccharomyces cerevisiae (2009) (94)
- Plasticity in eucaryotic 20S proteasome ring assembly revealed by a subunit deletion in yeast (2004) (93)
- An amphipathic helix targets serum and glucocorticoid-induced kinase 1 to the endoplasmic reticulum-associated ubiquitin-conjugation machinery. (2006) (90)
- SUMO-independent in vivo activity of a SUMO-targeted ubiquitin ligase toward a short-lived transcription factor. (2010) (89)
- A tetrahedral transition state at the active sites of the 20S proteasome is coupled to opening of the alpha-ring channel. (2009) (87)
- Ubiquitin-dependent protein degradation at the endoplasmic reticulum and nuclear envelope. (2019) (85)
- Substrate specificity of the ubiquitin and Ubl proteases (2016) (84)
- A unified mechanism for proteolysis and autocatalytic activation in the 20S proteasome (2016) (82)
- Ubiquitin-dependent protein degradation at the yeast endoplasmic reticulum and nuclear envelope (2015) (82)
- Assembly of the 20S proteasome. (2014) (81)
- The Toxin-Antidote Model of Cytoplasmic Incompatibility: Genetics and Evolutionary Implications. (2019) (80)
- Ubiquitin and intracellular protein degradation. (1992) (79)
- SUMO-1: Ubiquitin gains weight. (1997) (76)
- The short-lived MATa 2 transcriptional regulator is ubiquitinated in vivo (72)
- The yeast SEN3 gene encodes a regulatory subunit of the 26S proteasome complex required for ubiquitin-dependent protein degradation in vivo (1995) (70)
- Degradation of the bile salt export pump at endoplasmic reticulum in progressive familial intrahepatic cholestasis type II (2008) (70)
- A Single α Helix Drives Extensive Remodeling of the Proteasome Lid and Completion of Regulatory Particle Assembly (2015) (69)
- A Conserved 20S Proteasome Assembly Factor Requires a C-terminal HbYX Motif for Proteasomal Precursor Binding (2011) (69)
- Aberrant substrate engagement of the ER translocon triggers degradation by the Hrd1 ubiquitin ligase (2012) (69)
- Incorporation of the Rpn12 subunit couples completion of proteasome regulatory particle lid assembly to lid-base joining. (2011) (66)
- The intrinsically disordered Sem1 protein functions as a molecular tether during proteasome lid biogenesis. (2014) (65)
- A Wolbachia nuclease and its binding partner provide a distinct mechanism for cytoplasmic incompatibility (2019) (61)
- Order of the Proteasomal ATPases and Eukaryotic Proteasome Assembly (2011) (56)
- The Wolbachia cytoplasmic incompatibility enzyme CidB targets nuclear import and protamine-histone exchange factors (2019) (52)
- Spatial Organization of the Drosophila Nucleus: A Three-Dimensional Cytogenetic Study (1984) (52)
- The Ulp2 SUMO Protease Is Required for Cell Division following Termination of the DNA Damage Checkpoint (2007) (48)
- A Deubiquitinating Enzyme That Disassembles Free Polyubiquitin Chains Is Required for Development but Not Growth inDictyostelium * (1998) (46)
- Histone sumoylation and chromatin dynamics (2021) (46)
- The SUMO-targeted ubiquitin ligase subunit Slx5 resides in nuclear foci and at sites of DNA breaks (2009) (45)
- Some assembly required: dedicated chaperones in eukaryotic proteasome biogenesis (2008) (44)
- Designed proteins to modulate cellular networks. (2010) (44)
- Ubiquitin-dependent degradation of the yeast Mat(alpha)2 repressor enables a switch in developmental state. (2003) (44)
- N-terminal acetylation of the yeast Derlin Der1 is essential for Hrd1 ubiquitin-ligase activity toward luminal ER substrates (2013) (42)
- Degradation of the MATα2 transcriptional regulator is mediated by the proteasome (1995) (42)
- Assembly of an Evolutionarily Conserved Alternative Proteasome Isoform in Human Cells. (2016) (41)
- A conserved late endosome–targeting signal required for Doa4 deubiquitylating enzyme function (2006) (41)
- Site-specific cation release drives actin filament severing by vertebrate cofilin (2014) (40)
- Structure and functional analyses of the 26S proteasome subunits from plants – Plant 26S proteasome (1999) (38)
- An Unusual Transmembrane Helix in the Endoplasmic Reticulum Ubiquitin Ligase Doa10 Modulates Degradation of Its Cognate E2 Enzyme* (2011) (36)
- Loss of the SUMO protease Ulp2 triggers a specific multichromosome aneuploidy (2016) (34)
- Ubiquitin signalling: what's in a chain? (2004) (33)
- Essential role of nuclear localization for yeast Ulp2 SUMO protease function. (2009) (33)
- The Saccharomyces cerevisiae ubiquitin-proteasome system. (1999) (30)
- A Conserved C-terminal Element in the Yeast Doa10 and Human MARCH6 Ubiquitin Ligases Required for Selective Substrate Degradation* (2016) (30)
- A viable ubiquitin‐activating enzyme mutant for evaluating ubiquitin system function in Saccharomyces cerevisiae (2000) (30)
- Identification of SUMO-interacting proteins by yeast two-hybrid analysis. (2009) (30)
- Proteasomes: Isolation and Activity Assays (2015) (30)
- NF-κB signaling: Flipping the Switch with Polyubiquitin Chains (2004) (29)
- The Ulp 1 SUMO isopeptidase : distinct domains required for viability , nuclear envelope localization , and substrate specificity (2003) (25)
- Cholesterol increases protein levels of the E3 ligase MARCH6 and thereby stimulates protein degradation (2018) (24)
- Measuring atomic moment and magnetic order through magnetic linear dichroism with angular dependence studies of transition-metal alloys (2004) (23)
- A Conserved Protein with AN1 Zinc Finger and Ubiquitin-like Domains Modulates Cdc48 (p97) Function in the Ubiquitin-Proteasome Pathway* (2013) (22)
- Chromosome structure in four wild-type polytene tissues of Drosophila melanogaster (1987) (22)
- An evolutionarily conserved gene on human chromosome 5q33-q34, UBH1, encodes a novel deubiquitinating enzyme. (1998) (22)
- Histone sumoylation promotes Set3 histone-deacetylase complex-mediated transcriptional regulation (2020) (22)
- New Proteases in a Ubiquitin Stew (2002) (21)
- SUMO Pathway Modulation of Regulatory Protein Binding at the Ribosomal DNA Locus in Saccharomyces cerevisiae (2016) (21)
- Unraveling the means to the end in ATP-dependent proteases (2001) (21)
- The DOA pathway: studies on the functions and mechanisms of ubiquitin-dependent protein degradation in the yeast Saccharomyces cerevisiae. (1995) (21)
- The Biochemistry of Cytoplasmic Incompatibility Caused by Endosymbiotic Bacteria (2020) (21)
- Ubiquitin-Dependent Degradation of Transcription Regulators (1998) (21)
- Desumoylation of the Endoplasmic Reticulum Membrane VAP Family Protein Scs2 by Ulp1 and SUMO Regulation of the Inositol Synthesis Pathway (2011) (20)
- Light microscope based analysis of three‐dimensional structure: Applications to the study of Drosophila salivary gland nuclei. I. Data collection and analysis (1985) (20)
- Structure and functional analysis of the 26S proteasome subunits from plants. (1999) (20)
- Microautophagy regulates proteasome homeostasis (2020) (19)
- The Ulp2 SUMO protease promotes transcription elongation through regulation of histone sumoylation (2019) (19)
- New structural clues to substrate specificity in the "ubiquitin system". (2002) (19)
- Redundancy and variation in the ubiquitin-mediated proteolytic targeting of a transcription factor (2010) (19)
- Ulp2 and the DNA damage response: Desumoylation enables safe passage through mitosis (2008) (18)
- Assaying protein ubiquitination in Saccharomyces cerevisiae. (2002) (18)
- Distinct adaptive mechanisms drive recovery from aneuploidy caused by loss of the Ulp2 SUMO protease (2018) (18)
- Analysis of Protein Ubiquitination (2002) (18)
- Structural and mechanistic insights into the complexes formed by Wolbachia cytoplasmic incompatibility factors (2021) (17)
- The Short-Lived Matα2 Transcriptional Repressor Is Protected from Degradation In Vivo by Interactions with Its Corepressors Tup1 and Ssn6 (2006) (17)
- AMPK regulates ESCRT-dependent microautophagy of proteasomes concomitant with proteasome storage granule assembly during glucose starvation (2019) (17)
- Degradation of the yeast MAT alpha 2 transcriptional regulator is mediated by the proteasome. (1994) (17)
- Analysis of Protein Ubiquitination (2002) (17)
- Endoplasmic reticulum stress differentially inhibits endoplasmic reticulum and inner nuclear membrane protein quality control degradation pathways (2019) (16)
- Distinct Elements in the Proteasomal β5 Subunit Propeptide Required for Autocatalytic Processing and Proteasome Assembly* (2015) (15)
- Enhanced spin polarization of conduction electrons in Ni explained by comparison with Cu (2000) (15)
- Caution Does Not Preclude Predictive and Testable Models of Cytoplasmic Incompatibility: A Reply to Shropshire et al. (2019) (15)
- A deubiquitylase with an unusually high-affinity ubiquitin-binding domain from the scrub typhus pathogen Orientia tsutsugamushi (2020) (14)
- Protein quality control degron-containing substrates are differentially targeted in the cytoplasm and nucleus by ubiquitin ligases. (2020) (14)
- STUbL-mediated degradation of the transcription factor MATα2 requires degradation elements that coincide with corepressor binding sites (2015) (13)
- SUMO and cellular adaptive mechanisms (2020) (13)
- Degradation of the yeast MATα2 transcriptional regulator is mediated by the proteasome (13)
- Introduction to intracellular protein degradation. (2009) (13)
- Recent progress in ubiquitin and ubiquitin-like protein (Ubl) signaling (2016) (11)
- DNA binding by the MATα2 transcription factor controls its access to alternative ubiquitin-modification pathways (2018) (11)
- Ubiquitin Ligase Redundancy and Nuclear-Cytoplasmic Localization in Yeast Protein Quality Control (2021) (11)
- The CinB Nuclease from wNo Wolbachia Is Sufficient for Induction of Cytoplasmic Incompatibility in Drosophila (2022) (11)
- NF-kappaB signaling: flipping the switch with polyubiquitin chains. (2004) (10)
- Biochemical Functions of Ubiquitin and Ubiquitin‐like Protein Conjugation (2008) (10)
- A new class of SUMO proteases (2012) (10)
- A WLM Protein with SUMO-Directed Protease Activity (2010) (9)
- The Regulation of Chromatin by Dynamic SUMO Modifications. (2016) (9)
- Ubiquitin-dependent control of development in Saccharomyces cerevisiae. (2004) (9)
- Ubiquitin ligation without a ligase. (2007) (8)
- Molecular genetics of the ubiquitin-proteasome system: lessons from yeast. (2008) (7)
- The Wolbachia CinB Nuclease is Sufficient for Induction of Cytoplasmic Incompatibility (2021) (6)
- Disulfide engineering to map subunit interactions in the proteasome and other macromolecular complexes. (2012) (6)
- Split-Doa10: A Naturally Split Polytopic Eukaryotic Membrane Protein Generated by Fission of a Nuclear Gene (2012) (6)
- Epigenetic Mechanisms Contribute to Evolutionary Adaptation of Gene Network Activity under Environmental Selection (2020) (6)
- Crystal Structures of Wolbachia CidA and CidB Reveal Determinants of Bacteria-induced Cytoplasmic Incompatibility and Rescue (2022) (6)
- Preparation and characterization of yeast and human desumoylating enzymes. (2005) (5)
- Crystal structure of a guanine nucleotide exchange factor encoded by the scrub typhus pathogen Orientia tsutsugamushi (2020) (5)
- Molecular biology. New proteases in a ubiquitin stew. (2002) (5)
- Rapid degradation of progressive ankylosis protein (ANKH) in craniometaphyseal dysplasia (2018) (5)
- Functions of intracellular protein degradation in yeast. (1991) (5)
- A Conserved Protein with AN 1 Zinc Finger and Ubiquitin-like Domains Modulates Cdc 48 ( p 97 ) Function in the Ubiquitin-Proteasome Pathway * (2013) (5)
- The Sts1 nuclear import adapter uses a non-canonical bipartite nuclear localization signal and is directly degraded by the proteasome (2020) (4)
- Varshavsky's Contributions (2004) (4)
- Gyre and gimble in the proteasome (2016) (4)
- The DUB blade goes snicker-snack: Novel ubiquitin cleavage by a Legionella effector protein (2017) (3)
- On the magnetic instability of ultrathin FCC FexNi1−x films (1999) (3)
- Adaptive aneuploidy counters a dysregulated SUMO system (2017) (3)
- OtDUB from the Human Pathogen Orientia tsutsugamushi Modulates Host Membrane Trafficking by Multiple Mechanisms (2022) (3)
- Anomalous thickness dispersion of unoccupied states in the Cu/Ni/Cu(100) metallic quantum well system (2004) (3)
- Elements of the ERAD ubiquitin ligase Doa10 regulating sequential poly-ubiquitylation of its targets (2022) (3)
- The Sts1 nuclear import adaptor uses a noncanonical bipartite NLS and is directly degraded by the proteasome. (2020) (3)
- Conserved proline residues in the coiled coil–OB domain linkers of Rpt proteins facilitate eukaryotic proteasome base assembly (2021) (3)
- Selective Microautophagy of Proteasomes is Initiated by ESCRT-0 and Is Promoted by Proteasome Ubiquitylation. (2022) (3)
- The Ubiquitin–Proteasome System (2010) (2)
- Protein Modification: Bacterial Effectors Rewrite the Rules of Ubiquitylation (2016) (2)
- Yeast Nst1 is a novel component of P-bodies and is a specific suppressor of proteasome base assembly defects (2021) (2)
- Orientia tsutsugamushi OtDUB Is Expressed and Interacts with Adaptor Protein Complexes during Infection (2022) (1)
- Intracellular protein degradation (2007) (1)
- Author response: The Wolbachia cytoplasmic incompatibility enzyme CidB targets nuclear import and protamine-histone exchange factors (2019) (1)
- Cytoplasmic incompatibility: A Wolbachia toxin–antidote mechanism comes into view (2022) (1)
- Biogenesis of the eukaryotic proteasome (2012) (1)
- A versatile new tool derived from a bacterial deubiquitylase to detect and purify ubiquitylated substrates and their interacting proteins (2022) (1)
- Selective Microautophagy of Proteasomes is Initiated by ESCRT-0 and Is Promoted by Proteasome Ubiquitylation (2021) (1)
- A second degradation signal within the short‐lived transcription factor MATalpha2 (937.1) (2014) (1)
- Ulp2 SUMO Protease (2013) (1)
- Ectopic RING activity at the ER membrane differentially impacts ERAD protein quality control pathways (2023) (0)
- Pba3‐Pba4 Plays a Role in Preventing Non‐Productive Interactions Among the α Subunits of the Proteasome (2017) (0)
- An emerging role for thioester‐linked polyubiquitin chains in protein degradation (2008) (0)
- CHAPTER 181 – The Ubiquitin-Proteasome System (2003) (0)
- Preface. (2019) (0)
- SUMO and cellular adaptive mechanisms (2020) (0)
- Distinct adaptive mechanisms drive recovery from aneuploidy caused by loss of the Ulp2 SUMO protease (2018) (0)
- SUMO and ubiquitin transactions at the ER and nuclear envelope (2007) (0)
- Frequency Resolved and Heterodyned Femtosecond Infrared Echoes of Pep tides; Multiple Pulse Coherent Vibrational Analogues ofNMR (2001) (0)
- Substrate Targeting Minireview in the Ubiquitin System (1999) (0)
- Species-specific protein-protein interactions govern the humanization of the 20S proteasome in yeast (2022) (0)
- Actin Filament Severing by Vertebrate Cofilin is Driven by Linked Cation Release (2014) (0)
- Proteasomes: Isolation and Activity Assays (2023) (0)
- Changes in the Electronic Structure Related to the Ni2MnGa Martensitic Phase Transformation (2003) (0)
- Conserved prolines in the coiled coil-OB domain linkers of proteasomal ATPases facilitate eukaryotic proteasome base assembly (2020) (0)
- A versatile new ubiquitin detection and purification tool derived from a bacterial deubiquitylase (2021) (0)
- The Doa4 Deubiquitylating Enzyme ( Saccharomyces cerevisiae ) (2013) (0)
- Ubiquitin and Ubiquitin‐like Protein Conjugation (2008) (0)
- Methods for transforming destabilization of specific proteins in vivo (1991) (0)
- Differential requirements for molecular chaperones in the degradation of soluble and transmembrane substrates of the ubiquitin ligase Doa10 in ER associated degradation (ERAD) (2008) (0)
- Rapid degradation of progressive ankylosis protein (ANKH) in craniometaphyseal dysplasia (2018) (0)
- Preface. (2019) (0)
- Microautophagy regulates proteasome homeostasis (2020) (0)
- Occupied and Unoccupied MQW states of Cu/fccM/Cu(100) M=[Ni, Fe] (2002) (0)
- The Relationship between ER Stress and Protein Quality Control at the Translocon (2020) (0)
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