Markus W. Covert

Q: What Schools Are Affiliated With Markus W. Covert

Markus W. Covert is affiliated with the following schools: University of California, Berkeley, California Institute of Technology, University of California, San Diego, Stanford University, University of California, San Francisco, Brigham Young University

Markus W. Covert's AcademicInfluence.com Rankings

Markus W. Covert

Biology

#3808

World Rank

#5768

Historical Rank

#1509

USA Rank

Systems Biology

#36

World Rank

#36

Historical Rank

USA Rank

Computational Biology

#226

World Rank

#227

Historical Rank

#36

USA Rank

biology Degrees

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Biology

Markus W. Covert's Degrees

PhD Bioengineering University of California, San Francisco
Bachelors Bioengineering University of California, Berkeley

Why Is Markus W. Covert Influential?

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According to Wikipedia, Markus W. Covert is a researcher and professor of bioengineering at Stanford University who led the simulation of the first organism in software. Covert leads an interdisciplinary lab of approximately 10 graduate students and post-doctoral scholars.

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Markus W. Covert's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

A Whole-Cell Computational Model Predicts Phenotype from Genotype (2012) (1204)
Integrating high-throughput and computational data elucidates bacterial networks (2004) (819)
Single-cell NF-κB dynamics reveal digital activation and analogue information processing (2010) (727)
Deep learning for cellular image analysis (2019) (600)
Achieving Stability of Lipopolysaccharide-Induced NF-κB Activation (2005) (576)
Regulation of gene expression in flux balance models of metabolism. (2001) (439)
Metabolic modelling of microbes: the flux-balance approach. (2002) (394)
High-Sensitivity Measurements of Multiple Kinase Activities in Live Single Cells (2014) (394)
Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-Cell Imaging Experiments (2016) (384)
Genome-Scale Metabolic Model of Helicobacter pylori 26695 (2002) (351)
Metabolic modeling of microbial strains in silico. (2001) (336)
Transcriptional Regulation in Constraints-based Metabolic Models of Escherichia coli * 210 (2002) (334)
Achieving stability of lipopolysaccharide-induced NF-kappaB activation. (2005) (319)
Integrating metabolic, transcriptional regulatory and signal transduction models in Escherichia coli (2008) (298)
Neuron‐to‐neuron transmission of α‐synuclein fibrils through axonal transport (2012) (286)
Nonlytic viral spread enhanced by autophagy components (2014) (192)
Constraints-based models: regulation of gene expression reduces the steady-state solution space. (2003) (181)
Reconstruction of microbial transcriptional regulatory networks. (2004) (160)
A Noisy Paracrine Signal Determines the Cellular NF-κB Response to Lipopolysaccharide (2009) (136)
Genome‐scale metabolic networks (2009) (130)
Reconciling gene expression data with known genome-scale regulatory network structures. (2003) (124)
Measuring Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NF-κB Activation. (2017) (120)
Identifying constraints that govern cell behavior: a key to converting conceptual to computational models in biology? (2003) (87)
Summary of the DREAM8 Parameter Estimation Challenge: Toward Parameter Identification for Whole-Cell Models (2015) (84)
Simultaneous cross-evaluation of heterogeneous E. coli datasets via mechanistic simulation (2019) (81)
A Forward-Genetic Screen and Dynamic Analysis of Lambda Phage Host-Dependencies Reveals an Extensive Interaction Network and a New Anti-Viral Strategy (2010) (80)
The future of whole-cell modeling. (2014) (74)
The virus as metabolic engineer (2010) (68)
Towards a whole-cell modeling approach for synthetic biology. (2013) (67)
Why Build Whole-Cell Models? (2015) (61)
Accelerated discovery via a whole-cell model (2013) (61)
Computational modeling of mammalian signaling networks (2010) (60)
Live-cell measurements of kinase activity in single cells using translocation reporters (2017) (59)
Competing pathways control host resistance to virus via tRNA modification and programmed ribosomal frameshifting (2012) (45)
Determining Host Metabolic Limitations on Viral Replication via Integrated Modeling and Experimental Perturbation (2012) (42)
A dynamic network of transcription in LPS-treated human subjects (2009) (41)
WholeCellKB: model organism databases for comprehensive whole-cell models (2012) (41)
Single-cell variation leads to population invariance in NF-κB signaling dynamics (2015) (39)
NF-κB signaling dynamics is controlled by a dose-sensing autoregulatory loop (2019) (37)
Stress-mediated exit to quiescence restricted by increasing persistence in CDK4/6 activation (2020) (34)
WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions (2014) (32)
High-throughput, single-cell NF-κB dynamics. (2010) (31)
Microbial metabolites in the marine carbon cycle (2022) (30)
High-resolution imaging and computational analysis of haematopoietic cell dynamics in vivo (2016) (29)
Techniques for Studying Decoding of Single Cell Dynamics (2019) (23)
The Enemy of My Enemy: New Insights Regarding Bacteriophage-Mammalian Cell Interactions. (2020) (22)
Building Structural Models of a Whole Mycoplasma Cell. (2021) (22)
WholeCellViz: data visualization for whole-cell models (2013) (22)
Escalating Threat Levels of Bacterial Infection Can Be Discriminated by Distinct MAPK and NF-κB Signaling Dynamics in Single Host Cells. (2019) (21)
Single-Cell and Population NF-κB Dynamic Responses Depend on Lipopolysaccharide Preparation (2013) (20)
Incorporation of flexible objectives and time-linked simulation with flux balance analysis. (2014) (20)
Fundamentals of Systems Biology: From Synthetic Circuits to Whole-cell Models (2014) (15)
Combinatorial processing of bacterial and host-derived innate immune stimuli at the single-cell level (2019) (10)
Engineered Fluorescent E. coli Lysogens Allow Live-Cell Imaging of Functional Prophage Induction Triggered inside Macrophages. (2020) (9)
Multiscale models of infection (2019) (7)
Vivarium: an Interface and Engine for Integrative Multiscale Modeling in Computational Biology (2021) (7)
The E. coli Whole-Cell Modeling Project (2021) (6)
An energetic reformulation of kinetic rate laws enables scalable parameter estimation for biochemical networks. (2019) (5)
NetworkPainter: dynamic intracellular pathway animation in Cytobank (2015) (4)
Whole-Colony Modeling of Escherichia coli (2021) (4)
Simulating a living cell. (2013) (4)
An expanded whole-cell model of E. coli links cellular physiology with mechanisms of growth rate control (2022) (3)
A Whole Cell Model of Mycoplasma Genitalium Elucidates Mechanisms of Bacterial Replication (2012) (2)
Cells Respond Digitally to Variation in Signal Intensity via Stochastic Activation of NF-κB (2010) (2)
A Protocol to Engineer Bacteriophages for Live-Cell Imaging of Bacterial Prophage Induction Inside Mammalian Cells (2020) (2)
Integrated Regulatory and Metabolic Models (2006) (2)
A multiplexed epitope barcoding strategy that enables dynamic cellular phenotypic screens. (2022) (2)
Simulación de una célula viva (2014) (1)
A dynamic HIF1α- PPARγ circuit controls a paradoxical adipocyte regulatory landscape (2022) (1)
WholeCellViz: data visualization for whole-cell models (2013) (1)
A forecast for large-scale, predictive biology: Lessons from meteorology. (2021) (1)
Combining Comprehensive Analysis of Off-Site Lambda Phage Integration with a CRISPR-Based Means of Characterizing Downstream Physiology (2017) (1)
Package 'qpgraph' Title Estimation of Genetic and Molecular Regulatory Networks from High-throughput Genomics Data (0)
An expanded whole-cell model of E. coli links cellular physiology with mechanisms of growth rate control (2022) (0)
Bon Appétit, Marie Curie! A Stanford University Introductory Science of Cooking Course (2021) (0)
Measuring Signaling and R NA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NFk B Activation Graphical Abstract Highlights (2017) (0)
NF-$\kappa $B dynamics show digital activation and analog information processing in cells (2010) (0)
NF-� B signaling , dynamic range and stochastic switching under TNF-� and LPS stimulation (0)
Variation: Analytical Solutions of Ordinary Differential Equations (2017) (0)
Variations on a Theme of Control (2017) (0)
Author response: Stress-mediated exit to quiescence restricted by increasing persistence in CDK4/6 activation (2019) (0)
Cross-evaluation of curated E. coli transcription unit structures against a whole-cell model (2022) (0)
BUILDING WHOLE-CELL COMPUTATIONAL MODELS TO PREDICT CELLULAR PHENOTYPES AND ACCELERATE DISCOVERY (2021) (0)
Variation: Boolean Representations (2017) (0)
Toward a Whole Cell Model of Mycoplasma Genitalium (2011) (0)
Variation: Stochastic Simulation (2017) (0)
Sim (U)2 lating A + living → Cell. (2014) (0)
A forward genetic screen identifies host factors that influence the lysis-lysogeny decision in phage lambda (2017) (0)
Variation: Graphical Analysis (2017) (0)
Uncorrelated transcription factor dynamics in sister cells (2006) (0)
Variation: Numerical Integration (2017) (0)
Mycoplasma genitalium whole-cell model version 1.1 (2015) (0)
NetworkPainter: dynamic intracellular pathway animation in Cytobank (2015) (0)
180 T cell phenotype drives restructuring of tumor microenvironment to balance T cell longevity and tumor control: insights from multiplexed imaging and multi-scale agent based modeling (2021) (0)
Lipopolysaccharide A Noisy Paracrine Signal Determines the Cellular NF-{ kappa } B Response to (2009) (0)
An optimized reporter of the transcription factor hypoxia-inducible factor 1α reveals complex HIF-1α activation dynamics in single cells. (2023) (0)

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Other Resources About Markus W. Covert

What Schools Are Affiliated With Markus W. Covert?

Markus W. Covert is affiliated with the following schools:

Markus W. Covert's Academic­Influence.com Rankings

Markus W. Covert's Degrees

Why Is Markus W. Covert Influential?

Markus W. Covert's Published Works

Published Works

Other Resources About Markus W. Covert

What Schools Are Affiliated With Markus W. Covert?

Markus W. Covert's AcademicInfluence.com Rankings