Martin Antonio
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Computer Science
Martin Antonio's Degrees
- PhD Computer Science Stanford University
- Masters Computer Science University of California, Berkeley
- Bachelors Computer Science University of California, Berkeley
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(Suggest an Edit or Addition)According to Wikipedia, Martin Antonio is an Ghanaian Biologist who is Principal Investigator at the Medical Research Council Unit at London School of Hygiene and Tropical Medicine. He is Director of the World Health Organization Centre for New Vaccines Surveillance and leads the West and Central Africa Regional Reference Laboratory for Invasive Bacterial Diseases.
Martin Antonio's Published Works
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Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Burden and aetiology of diarrhoeal disease in infants and young children in developing countries (the Global Enteric Multicenter Study, GEMS): a prospective, case-control study (2013) (2732)
- Global, regional, and national disease burden estimates of acute lower respiratory infections due to respiratory syncytial virus in young children in 2015: a systematic review and modelling study (2017) (1311)
- A type VII myosin encoded by the mouse deafness gene shaker-1 (1995) (666)
- Use of quantitative molecular diagnostic methods to identify causes of diarrhoea in children: a reanalysis of the GEMS case-control study (2016) (555)
- Causes of severe pneumonia requiring hospital admission in children without HIV infection from Africa and Asia: the PERCH multi-country case-control study (2019) (425)
- Standard method for detecting upper respiratory carriage of Streptococcus pneumoniae: updated recommendations from the World Health Organization Pneumococcal Carriage Working Group. (2013) (352)
- Progression to active tuberculosis, but not transmission, varies by Mycobacterium tuberculosis lineage in The Gambia. (2008) (279)
- Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition (2014) (273)
- Shigella Isolates From the Global Enteric Multicenter Study Inform Vaccine Development (2014) (260)
- Mycobacterium africanum—Review of an Important Cause of Human Tuberculosis in West Africa (2010) (241)
- Development and assessment of molecular diagnostic tests for 15 enteropathogens causing childhood diarrhoea: a multicentre study. (2014) (236)
- The Burden of Cryptosporidium Diarrheal Disease among Children < 24 Months of Age in Moderate/High Mortality Regions of Sub-Saharan Africa and South Asia, Utilizing Data from the Global Enteric Multicenter Study (GEMS) (2016) (185)
- Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing. (2013) (181)
- Diagnostic Microbiologic Methods in the GEMS-1 Case/Control Study (2012) (171)
- COVID-19 pandemic in west Africa (2020) (160)
- Effect of the introduction of pneumococcal conjugate vaccination on invasive pneumococcal disease in The Gambia: a population-based surveillance study (2016) (151)
- Metabolite changes in blood predict the onset of tuberculosis (2018) (139)
- Effects of Community-Wide Vaccination with PCV-7 on Pneumococcal Nasopharyngeal Carriage in The Gambia: A Cluster-Randomized Trial (2011) (128)
- The ETT2 Gene Cluster, Encoding a Second Type III Secretion System from Escherichia coli, Is Present in the Majority of Strains but Has Undergone Widespread Mutational Attrition (2004) (126)
- The incidence, aetiology, and adverse clinical consequences of less severe diarrhoeal episodes among infants and children residing in low-income and middle-income countries: a 12-month case-control study as a follow-on to the Global Enteric Multicenter Study (GEMS) (2019) (120)
- Mutations Affecting the Rossman Fold of Isoleucyl-tRNA Synthetase Are Correlated with Low-Level Mupirocin Resistance in Staphylococcus aureus (2002) (113)
- Pneumococcal lineages associated with serotype replacement and antibiotic resistance in childhood invasive pneumococcal disease in the post-PCV13 era: an international whole-genome sequencing study (2019) (112)
- International genomic definition of pneumococcal lineages, to contextualise disease, antibiotic resistance and vaccine impact (2019) (110)
- Culture-independent detection and characterisation of Mycobacterium tuberculosis and M. africanum in sputum samples using shotgun metagenomics on a benchtop sequencer (2014) (109)
- The genome of the vervet (Chlorocebus aethiops sabaeus) (2015) (107)
- Towards host-directed therapies for tuberculosis (2015) (104)
- Quantitative PCR for Detection of Shigella Improves Ascertainment of Shigella Burden in Children with Moderate-to-Severe Diarrhea in Low-Income Countries (2013) (102)
- Ancient hybridization and strong adaptation to viruses across African vervet monkey populations (2016) (91)
- Early acquisition and high nasopharyngeal co-colonisation by Streptococcus pneumoniae and three respiratory pathogens amongst Gambian new-borns and infants (2011) (90)
- Diarrhoeal disease and subsequent risk of death in infants and children residing in low-income and middle-income countries: analysis of the GEMS case-control study and 12-month GEMS-1A follow-on study (2019) (88)
- Transmission of Streptococcus pneumoniae in rural Gambian villages: a longitudinal study. (2010) (87)
- Pre-Vaccination Nasopharyngeal Pneumococcal Carriage in a Nigerian Population: Epidemiology and Population Biology (2012) (86)
- Density of Upper Respiratory Colonization With Streptococcus pneumoniae and Its Role in the Diagnosis of Pneumococcal Pneumonia Among Children Aged <5 Years in the PERCH Study (2017) (83)
- Impact of the introduction of pneumococcal conjugate vaccination on pneumonia in The Gambia: population-based surveillance and case-control studies (2017) (82)
- Variation at the capsule locus, cps, of mistyped and non-typable Streptococcus pneumoniae isolates (2012) (80)
- Association of C-Reactive Protein With Bacterial and Respiratory Syncytial Virus–Associated Pneumonia Among Children Aged <5 Years in the PERCH Study (2017) (74)
- Is Higher Viral Load in the Upper Respiratory Tract Associated With Severe Pneumonia? Findings From the PERCH Study (2017) (72)
- Factors Associated with Siman Immunodeficiency Virus Transmission in a Natural African Nonhuman Primate Host in the Wild (2014) (72)
- Is Higher Viral Load in the Upper Respiratory Tract Associated With Severe Pneumonia? Findings From the PERCH Study (2017) (72)
- The Genome of Mycobacterium Africanum West African 2 Reveals a Lineage-Specific Locus and Genome Erosion Common to the M. tuberculosis Complex (2012) (72)
- An outbreak of pneumococcal meningitis among older children (≥5 years) and adults after the implementation of an infant vaccination programme with the 13-valent pneumococcal conjugate vaccine in Ghana (2016) (70)
- Phylogenomics of Mycobacterium africanum reveals a new lineage and a complex evolutionary history (2020) (67)
- Prevalence of classic, MLB-clade and VA-clade Astroviruses in Kenya and The Gambia (2015) (66)
- Efficacy of a novel, protein-based pneumococcal vaccine against nasopharyngeal carriage of Streptococcus pneumoniae in infants: A phase 2, randomized, controlled, observer-blind study. (2017) (65)
- Seasonality and outbreak of a predominant Streptococcus pneumoniae serotype 1 clone from The Gambia: Expansion of ST217 hypervirulent clonal complex in West Africa (2008) (65)
- Molecular epidemiology of community-acquired invasive non-typhoidal Salmonella among children aged 2 29 months in rural Gambia and discovery of a new serovar, Salmonella enterica Dingiri. (2007) (65)
- Use of Spoligotyping and Large Sequence Polymorphisms To Study the Population Structure of the Mycobacterium tuberculosis Complex in a Cohort Study of Consecutive Smear-Positive Tuberculosis Cases in The Gambia (2009) (64)
- The Effect of Antibiotic Exposure and Specimen Volume on the Detection of Bacterial Pathogens in Children With Pneumonia (2017) (62)
- RISK6, a 6-gene transcriptomic signature of TB disease risk, diagnosis and treatment response (2020) (61)
- Antimicrobial resistance and virulence genes of non-typhoidal Salmonella isolates in The Gambia and Senegal. (2011) (61)
- Genomic diversity of EPEC associated with clinical presentations of differing severity (2016) (60)
- Evolution of atypical enteropathogenic E. coli by repeated acquisition of LEE pathogenicity island variants (2016) (60)
- Etiology of Severe Childhood Pneumonia in The Gambia, West Africa, Determined by Conventional and Molecular Microbiological Analyses of Lung and Pleural Aspirate Samples (2014) (60)
- Global emergence and population dynamics of divergent serotype 3 CC180 pneumococci (2018) (59)
- Chest Radiograph Findings in Childhood Pneumonia Cases From the Multisite PERCH Study (2017) (59)
- Clonal Differences between Non-Typhoidal Salmonella (NTS) Recovered from Children and Animals Living in Close Contact in The Gambia (2011) (58)
- Effect of Age and Vaccination With a Pneumococcal Conjugate Vaccine on the Density of Pneumococcal Nasopharyngeal Carriage (2012) (56)
- Geographic variation in the eukaryotic virome of human diarrhea (2014) (55)
- Colonization factors among enterotoxigenic Escherichia coli isolates from children with moderate-to-severe diarrhea and from matched controls in the Global Enteric Multicenter Study (GEMS) (2019) (54)
- Molecular epidemiology of pneumococci obtained from Gambian children aged 2–29 months with invasive pneumococcal disease during a trial of a 9-valent pneumococcal conjugate vaccine (2008) (52)
- Comparison of TB-LAMP, GeneXpert MTB/RIF and culture for diagnosis of pulmonary tuberculosis in The Gambia. (2016) (52)
- Highly Accurate Diagnosis of Pleural Tuberculosis by Immunological Analysis of the Pleural Effusion (2012) (51)
- Differences between tuberculosis cases infected with Mycobacterium africanum, West African type 2, relative to Euro-American Mycobacterium tuberculosis: an update. (2010) (50)
- Serotype-Related Variation in Susceptibility to Complement Deposition and Opsonophagocytosis among Clinical Isolates of Streptococcus pneumoniae (2010) (50)
- Safety of Induced Sputum Collection in Children Hospitalized With Severe or Very Severe Pneumonia (2017) (49)
- A diverse group of small circular ssDNA viral genomes in human and non-human primate stools (2015) (49)
- Colonization Density of the Upper Respiratory Tract as a Predictor of Pneumonia—Haemophilus influenzae, Moraxella catarrhalis, Staphylococcus aureus, and Pneumocystis jirovecii (2017) (48)
- Effect on nasopharyngeal pneumococcal carriage of replacing PCV7 with PCV13 in the Expanded Programme of Immunization in The Gambia (2015) (48)
- Extensive microbial diversity within the chicken gut microbiome revealed by metagenomics and culture (2021) (48)
- Colonization Density of the Upper Respiratory Tract as a Predictor of Pneumonia—Haemophilus influenzae, Moraxella catarrhalis, Staphylococcus aureus, and Pneumocystis jirovecii (2017) (48)
- Antimicrobial Susceptibility and Resistance Patterns among Helicobacter pylori Strains from The Gambia, West Africa (2012) (46)
- Interferon-γ ELISPOT as a biomarker of treatment efficacy in latent tuberculosis infection: a clinical trial. (2013) (45)
- Prevalence of Panton-Valentine Leukocidin (PVL) and Antimicrobial Resistance in Community-Acquired Clinical Staphylococcus aureus in an Urban Gambian Hospital: A 11-Year Period Retrospective Pilot Study (2019) (42)
- Standardization of Laboratory Methods for the PERCH Study (2017) (42)
- Large Outbreak of Neisseria meningitidis Serogroup C — Nigeria, December 2016–June 2017 (2017) (40)
- Re-emergence of Haemophilus influenzae type b (Hib) disease in The Gambia following successful elimination with conjugate Hib vaccine. (2007) (40)
- The immunogenicity and impact on nasopharyngeal carriage of fewer doses of conjugate pneumococcal vaccine immunization schedule. (2011) (40)
- Rapid replacement by non-vaccine pneumococcal serotypes may mitigate the impact of the pneumococcal conjugate vaccine on nasopharyngeal bacterial ecology (2017) (39)
- Detection of Pneumococcal DNA in Blood by Polymerase Chain Reaction for Diagnosing Pneumococcal Pneumonia in Young Children From Low- and Middle-Income Countries (2017) (37)
- The emerging threat of pre-extensively drug-resistant tuberculosis in West Africa: preparing for large-scale tuberculosis research and drug resistance surveillance (2016) (37)
- Detection of Pneumococcal DNA in Blood by Polymerase Chain Reaction for Diagnosing Pneumococcal Pneumonia in Young Children From Low- and Middle-Income Countries (2017) (37)
- Deciphering the Growth Behaviour of Mycobacterium africanum (2013) (36)
- Reactogenicity, safety and immunogenicity of a protein-based pneumococcal vaccine in Gambian children aged 2–4 years: A phase II randomized study (2015) (35)
- High Levels of Recombination among Streptococcus pneumoniae Isolates from the Gambia (2011) (35)
- Global burden of acute lower respiratory infection associated with human metapneumovirus in children under 5 years in 2018: a systematic review and modelling study (2020) (34)
- Face Mask Sampling for the Detection of Mycobacterium tuberculosis in Expelled Aerosols (2014) (32)
- Non-tuberculous Mycobacteria isolated from Pulmonary samples in sub-Saharan Africa - A Systematic Review and Meta Analyses (2017) (32)
- Mixed Infection with cagA Positive and cagA Negative Strains of Helicobacter pylori Lowers Disease Burden in The Gambia (2011) (32)
- Region-specific diversification of the highly virulent serotype 1 Streptococcus pneumoniae (2015) (32)
- Health Care Utilization and Attitudes Survey: Understanding Diarrheal Disease in Rural Gambia (2013) (32)
- Competition Between Streptococcus Pneumoniae Strains: Implications for Vaccine-Induced Replacement in Colonization and Disease (2013) (31)
- Microscopic Analysis and Quality Assessment of Induced Sputum From Children With Pneumonia in the PERCH Study (2017) (31)
- A Mycobacterial Perspective on Tuberculosis in West Africa: Significant Geographical Variation of M. africanum and Other M. tuberculosis Complex Lineages (2016) (30)
- PCR-based genotyping of Helicobacter pylori of Gambian children and adults directly from biopsy specimens and bacterial cultures (2011) (30)
- Comparison of the Prevalence of Common Bacterial Pathogens in the Oropharynx and Nasopharynx of Gambian Infants (2013) (30)
- The First Phylogeographic Population Structure and Analysis of Transmission Dynamics of M. africanum West African 1— Combining Molecular Data from Benin, Nigeria and Sierra Leone (2013) (30)
- Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches (2017) (29)
- Nasopharyngeal Carriage of Pneumococci Four Years after Community-Wide Vaccination with PCV-7 in The Gambia: Long-Term Evaluation of a Cluster Randomized Trial (2013) (29)
- Microbiota That Affect Risk for Shigellosis in Children in Low-Income Countries (2015) (29)
- The impact of childhood vaccines on bacterial carriage in the nasopharynx: a longitudinal study (2015) (29)
- Methylation in Mycobacterium tuberculosis is lineage specific with associated mutations present globally (2018) (28)
- Limited Utility of Polymerase Chain Reaction in Induced Sputum Specimens for Determining the Causes of Childhood Pneumonia in Resource-Poor Settings: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study (2017) (28)
- The Diagnostic Utility of Induced Sputum Microscopy and Culture in Childhood Pneumonia (2017) (28)
- Salmonella Infections in The Gambia, 2005-2015. (2015) (27)
- Standardization of Clinical Assessment and Sample Collection Across All PERCH Study Sites (2017) (27)
- Pathogens Associated With Linear Growth Faltering in Children With Diarrhea and Impact of Antibiotic Treatment: The Global Enteric Multicenter Study (2021) (27)
- Transmission of Staphylococcus aureus from Humans to Green Monkeys in The Gambia as Revealed by Whole-Genome Sequencing (2016) (26)
- Evaluation of sequential multiplex PCR for direct detection of multiple serotypes of Streptococcus pneumoniae from nasopharyngeal secretions. (2009) (26)
- Genome Analysis of a Highly Virulent Serotype 1 Strain of Streptococcus pneumoniae from West Africa (2012) (25)
- Population Biology of Streptococcus pneumoniae in West Africa: Multilocus Sequence Typing of Serotypes That Exhibit Different Predisposition to Invasive Disease and Carriage (2013) (25)
- Whole-genome sequencing illuminates the evolution and spread of multidrug-resistant tuberculosis in Southwest Nigeria (2017) (24)
- Evaluation of Pneumococcal Load in Blood by Polymerase Chain Reaction for the Diagnosis of Pneumococcal Pneumonia in Young Children in the PERCH Study (2017) (24)
- Evaluation of Pneumococcal Load in Blood by Polymerase Chain Reaction for the Diagnosis of Pneumococcal Pneumonia in Young Children in the PERCH Study (2017) (24)
- Visualizing variation within Global Pneumococcal Sequence Clusters (GPSCs) and country population snapshots to contextualize pneumococcal isolates (2020) (24)
- Comparative evaluation of BACTEC MGIT 960 with BACTEC 9000 MB and LJ for isolation of mycobacteria in The Gambia. (2008) (23)
- Chrysomya putoria, a Putative Vector of Diarrheal Diseases (2012) (23)
- Within-host microevolution of Streptococcus pneumoniae is rapid and adaptive during natural colonisation (2020) (23)
- Survey of Culture, GoldenGate Assay, Universal Biosensor Assay, and 16S rRNA Gene Sequencing as Alternative Methods of Bacterial Pathogen Detection (2013) (23)
- Understanding pneumococcal serotype 1 biology through population genomic analysis (2016) (23)
- Aeromonas-Associated Diarrhea in Children Under 5 Years: The GEMS Experience. (2016) (23)
- Pneumococcal carriage in rural Gambia prior to the introduction of pneumococcal conjugate vaccine: a population‐based survey (2015) (23)
- Rapid growth is a dominant predictor of hepcidin suppression and declining ferritin in Gambian infants (2019) (23)
- Pediatric Bacterial Meningitis Surveillance in the World Health Organization African Region Using the Invasive Bacterial Vaccine-Preventable Disease Surveillance Network, 2011–2016 (2019) (21)
- Bacterial Factors Associated with Lethal Outcome of Enteropathogenic Escherichia coli Infection: Genomic Case-Control Studies (2015) (21)
- Cryptosporidium infection in rural Gambian children: Epidemiology and risk factors (2019) (20)
- Impact of the Mycobaterium africanum West Africa 2 Lineage on TB Diagnostics in West Africa: Decreased Sensitivity of Rapid Identification Tests in The Gambia (2016) (20)
- Should Controls With Respiratory Symptoms Be Excluded From Case-Control Studies of Pneumonia Etiology? Reflections From the PERCH Study (2017) (19)
- The global distribution and diversity of protein vaccine candidate antigens in the highly virulent Streptococcus pnuemoniae serotype 1 (2017) (19)
- Alternative Molecular Methods for Improved Detection of Meningococcal Carriage and Measurement of Bacterial Density (2016) (19)
- Seasonality of Pneumococcal Nasopharyngeal Carriage in Rural Gambia Determined within the Context of a Cluster Randomized Pneumococcal Vaccine Trial (2015) (19)
- Characterisation of novel strains of multiply antibiotic-resistant Salmonella recovered from poultry in Southern Senegal. (2012) (19)
- Meningococcus serogroup C clonal complex ST-10217 outbreak in Zamfara State, Northern Nigeria (2018) (18)
- Differential effects of frozen storage on the molecular detection of bacterial taxa that inhabit the nasopharynx (2011) (18)
- Discovery of rosavirus 2, a novel variant of a rodent-associated picornavirus, in children from The Gambia. (2014) (18)
- Association between functional antibody against Group B Streptococcus and maternal and infant colonization in a Gambian cohort (2017) (18)
- Differences in T‐cell responses between Mycobacterium tuberculosis and Mycobacterium africanum‐infected patients (2014) (18)
- A tuberculosis nationwide prevalence survey in Gambia, 2012 (2016) (18)
- High genetic diversity of Staphylococcus aureus strains colonising the nasopharynx of Gambian villagers before widespread use of pneumococcal conjugate vaccines (2016) (17)
- Increased Disease due to Haemophilus influenzae Type b: Population-based Surveillance in Eastern Gambia, 2008–2013 (2015) (16)
- Immunogenicity of pneumococcal conjugate vaccine formulations containing pneumococcal proteins, and immunogenicity and reactogenicity of co-administered routine vaccines - A phase II, randomised, observer-blind study in Gambian infants. (2019) (16)
- Using pneumococcal and rotavirus surveillance in vaccine decision-making: A series of case studies in Bangladesh, Armenia and the Gambia. (2018) (16)
- Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment (2016) (16)
- Evolution of Mycobacterium tuberculosis complex lineages and their role in an emerging threat of multidrug resistant tuberculosis in Bamako, Mali (2020) (16)
- Associations between nasopharyngeal carriage of Group B Streptococcus and other respiratory pathogens during early infancy (2016) (15)
- Immunogenic Mycobacterium africanum Strains Associated with Ongoing Transmission in The Gambia (2013) (15)
- Adaptation of Mycobacterium tuberculosis to Impaired Host Immunity in HIV-Infected Patients. (2016) (14)
- Genomic diversity of Escherichia coli isolates from backyard chickens and guinea fowl in the Gambia (2020) (14)
- Putative novel cps loci in a large global collection of pneumococci (2019) (14)
- High burden and seasonal variation of paediatric scabies and pyoderma prevalence in The Gambia: A cross-sectional study (2019) (14)
- High Genotypic Diversity among Rotavirus Strains Infecting Gambian Children (2014) (14)
- Population Genetic Analyses of Helicobacter pylori Isolates from Gambian Adults and Children (2014) (13)
- Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum (2017) (13)
- Community-acquired Invasive Bacterial Disease in Urban Gambia, 2005–2015: A Hospital-based Surveillance (2019) (13)
- Plasma lipid profiles discriminate bacterial from viral infection in febrile children (2019) (13)
- Comparative genomics shows differences in the electron transport and carbon metabolic pathways of Mycobacterium africanum relative to Mycobacterium tuberculosis and suggests an adaptation to low oxygen tension (2019) (12)
- Pediatric Bacterial Meningitis Surveillance in Nigeria From 2010 to 2016, Prior to and During the Phased Introduction of the 10-Valent Pneumococcal Conjugate Vaccine (2019) (12)
- Antimicrobial resistance surveillance in Africa: Successes, gaps and a roadmap for the future (2018) (12)
- Etiology of Pediatric Bacterial Meningitis Pre- and Post-PCV13 Introduction Among Children Under 5 Years Old in Lomé, Togo (2019) (12)
- Genomic diversity of Escherichia coli isolates from non-human primates in the Gambia (2020) (11)
- Identification of Subsets of Enteroaggregative Escherichia coli Associated with Diarrheal Disease among Under 5 Years of Age Children from Rural Gambia (2017) (11)
- Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism (2020) (11)
- Ethical Considerations for Movement Mapping to Identify Disease Transmission Hotspots (2019) (11)
- The Global Landscape of Pediatric Bacterial Meningitis Data Reported to the World Health Organization–Coordinated Invasive Bacterial Vaccine-Preventable Disease Surveillance Network, 2014–2019 (2021) (11)
- Characteristics of Salmonella Recovered From Stools of Children Enrolled in the Global Enteric Multicenter Study (2021) (10)
- Hospital-based Surveillance for Pediatric Bacterial Meningitis in the Era of the 13-Valent Pneumococcal Conjugate Vaccine in Ghana (2019) (10)
- Impact of the introduction of pneumococcal conjugate vaccination on invasive pneumococcal disease and pneumonia in The Gambia: 10 years of population-based surveillance (2021) (10)
- Comparative phylogenomics of Streptococcus pneumoniae isolated from invasive disease and nasopharyngeal carriage from West Africans (2012) (10)
- High Levels of Recombination among Streptococcus pneumoniae Isolates from the Gambia (2011) (9)
- Association of slow recovery of Mycobacterium africanum-infected patients posttreatment with high content of Persister-Like bacilli in pretreatment sputum (2016) (9)
- Etiology of Pediatric Meningitis in West Africa Using Molecular Methods in the Era of Conjugate Vaccines against Pneumococcus, Meningococcus, and Haemophilus influenzae Type b (2020) (9)
- Temporal changes in nasopharyngeal carriage of Streptococcus pneumoniae serotype 1 genotypes in healthy Gambians before and after the 7-valent pneumococcal conjugate vaccine (2015) (9)
- Emergence of a multidrug-resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13: an international whole-genome sequencing study (2022) (9)
- Declining Trends of Pneumococcal Meningitis in Gambian Children After the Introduction of Pneumococcal Conjugate Vaccines (2019) (9)
- Comparative Genomic Analysis and In Vivo Modeling of Streptococcus pneumoniae ST3081 and ST618 Isolates Reveal Key Genetic and Phenotypic Differences Contributing to Clonal Replacement of Serotype 1 in The Gambia (2017) (9)
- A Novel Campylobacter jejuni Sequence Type from a Culture-Negative Patient in The Gambia (2008) (8)
- Intense and Mild First Epidemic Wave of Coronavirus Disease, The Gambia (2021) (8)
- A mosaic tetracycline resistance gene tet(S/M) detected in an MDR pneumococcal CC230 lineage that underwent capsular switching in South Africa (2019) (8)
- The Etiology of Pneumonia From Analysis of Lung Aspirate and Pleural Fluid Samples: Findings From the Pneumonia Etiology Research for Child Health (PERCH) Study (2020) (8)
- Pediatric Bacterial Meningitis Surveillance in Niger: Increased Importance of Neisseria meningitidis Serogroup C, and a Decrease in Streptococcus pneumoniae Following 13-Valent Pneumococcal Conjugate Vaccine Introduction (2019) (8)
- African Nonhuman Primate Host in the Wild (2014) (8)
- A retrospective study of clinical Streptococcus pneumoniae isolates from four health facilities in South-West Nigeria (2012) (8)
- Carriage Dynamics of Pneumococcal Serotypes in Naturally Colonized Infants in a Rural African Setting During the First Year of Life (2021) (8)
- Declines in Pediatric Bacterial Meningitis in the Republic of Benin Following Introduction of Pneumococcal Conjugate Vaccine: Epidemiological and Etiological Findings, 2011–2016 (2019) (8)
- Mycobacterium tuberculosis complex lineage 5 exhibits high levels of within-lineage genomic diversity and differing gene content compared to the type strain H37Rv (2020) (8)
- Shifts in Mycobacterial Populations and Emerging Drug-Resistance in West and Central Africa (2014) (8)
- Immunogenicity of antigens from the TbD1 region present in M. africanum and missing from "modern" M. tuberculosis: a cross- sectional study (2010) (8)
- Prevalence and risk factors for Staphylococcus aureus nasopharyngeal carriage during a PCV trial (2017) (8)
- Changes in the Molecular Epidemiology of Pediatric Bacterial Meningitis in Senegal After Pneumococcal Conjugate Vaccine Introduction (2019) (7)
- A cross-sectional study of tuberculosis drug resistance among previously treated patients in a tertiary hospital in Accra, Ghana: public health implications of standardized regimens (2018) (7)
- Interactions between fecal gut microbiome, enteric pathogens, and energy regulating hormones among acutely malnourished rural Gambian children (2021) (7)
- Second-line anti-tuberculosis drug resistance testing in Ghana identifies the first extensively drug-resistant tuberculosis case (2018) (7)
- The Etiology of Childhood Pneumonia in The Gambia (2021) (7)
- Bacteremia in Childhood Life-Threatening Infections in Urban Gambia: EUCLIDS in West Africa (2019) (7)
- Molecular diagnostic assays for the detection of common bacterial meningitis pathogens: A narrative review (2021) (7)
- Global Distribution of Invasive Serotype 35D Streptococcus pneumoniae Isolates following Introduction of 13-Valent Pneumococcal Conjugate Vaccine (2018) (6)
- Genomic diversity of Escherichia coli from healthy children in rural Gambia (2021) (6)
- The Clinical Presentation of Culture-positive and Culture-negative, Quantitative Polymerase Chain Reaction (qPCR)-Attributable Shigellosis in the Global Enteric Multicenter Study and Derivation of a Shigella Severity Score: Implications for Pediatric Shigella Vaccine Trials (2020) (6)
- Origin of imported SARS-CoV-2 strains in The Gambia identified from whole genome sequences (2020) (6)
- Hospital-based Surveillance Provides Insights Into the Etiology of Pediatric Bacterial Meningitis in Yaoundé, Cameroon, in the Post-Vaccine Era (2019) (6)
- Population structure, epidemiology and antibiotic resistance patterns of Streptococcus pneumoniae serotype 5: prior to PCV-13 vaccine introduction in Eastern Gambia (2016) (6)
- Genomic diversity and antimicrobial resistance among non-typhoidal Salmonella associated with human disease in The Gambia (2020) (6)
- Correction: Deciphering the Growth Behaviour of Mycobacterium africanum (2013) (6)
- Exogenous re-infection by a novel Streptococcus pneumoniae serotype 14 as a cause of recurrent meningitis in a child from The Gambia (2009) (6)
- Impact of routine vaccination against Haemophilus influenzae type b in The Gambia: 20 years after its introduction (2020) (6)
- Etiology of Bacterial Meningitis Among Children <5 Years Old in Côte d’Ivoire: Findings of Hospital-based Surveillance Before and After Pneumococcal Conjugate Vaccine Introduction (2019) (5)
- Microbes and the Malnourished Child (2013) (5)
- Molecular Epidemiology of Group A Streptococcus Infections in The Gambia (2021) (5)
- Streptococcus pneumoniae serotypes that frequently colonise the human nasopharynx are common recipients of penicillin-binding protein gene fragments from Streptococcus mitis (2021) (5)
- Epidemiology of the Rhinovirus (RV) in African and Southeast Asian Children: A Case-Control Pneumonia Etiology Study (2021) (4)
- Corrigendum to "Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing" [Virology 436 (2) (2013) 295-303] (2013) (4)
- MULTIDRUG-RESISTANT TUBERCULOSIS (MDR-TB): AN EMERGING PROBLEM IN WEST AFRICA (2017) (4)
- Endemic and Epidemic Cholera in Africa (2011) (4)
- Pneumococcal Meningitis Outbreaks in Africa, 2000-2018: Systematic Literature Review and Meningitis Surveillance Database Analyses. (2021) (4)
- Moderate-to-Severe Diarrhea and Stunting Among Children Younger Than 5 Years: Findings From the Vaccine Impact on Diarrhea in Africa (VIDA) Study (2023) (4)
- T cell receptor repertoires associated with control and disease progression following Mycobacterium tuberculosis infection (2023) (4)
- Examining human paragonimiasis as a differential diagnosis to tuberculosis in The Gambia (2018) (4)
- Kinetics of antibodies against pneumococcal proteins and their relationship to nasopharyngeal carriage in the first two months of life (2017) (4)
- Group A streptococcal disease in paediatric inpatients: a European perspective (2022) (3)
- Evaluation of the Kudoh method for mycobacterial culture: Gambia experience (2016) (3)
- Global distribution of invasive serotype 35D streptococcus pneumoniae post-PCV13 introduction (2018) (3)
- Antibiotic-Prescribing Practices for Management of Childhood Diarrhea in 3 Sub-Saharan African Countries: Findings From the Vaccine Impact on Diarrhea in Africa (VIDA) Study, 2015–2018 (2023) (3)
- Incidence of macrolide–lincosamide–streptogramin B resistance amongst beta-haemolytic streptococci in The Gambia (2017) (3)
- Chest Radiograph Findings in Childhood Pneumonia Cases From the Multi‐Site Perch Study (2018) (3)
- Serotypes of Bacteria Encountered in Childhood Purulent Meningitis in Children in Parakou (Benin) in 2011 (2016) (3)
- Corrigendum: SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data (2018) (2)
- Isolation of Methicillin-resistant Staphylococcus aureus and Multidrug-resistant Elizabethkingia meningoseptica From Neonates Within Minutes of Birth. (2017) (2)
- Emergence of a multidrug resistant and virulent Streptococcus pneumoniae lineage mediates serotype replacement after PCV13 (2021) (2)
- A Genomic Blueprint of the Chicken Gut Microbiome (2020) (2)
- Ancient hybridization and strong adaptation to viruses across African vervet monkey populations (2017) (2)
- A Genomic Census of the Chicken Gut Microbiome using Metagenomics and Culture (2020) (2)
- Shigella in Africa: New Insights From the Vaccine Impact on Diarrhea in Africa (VIDA) Study (2023) (2)
- Non-human primates in the Gambia harbour human-associated pathogenic Escherichia coli strains (2020) (2)
- Etiology, Presentation, and Risk Factors for Diarrheal Syndromes in 3 Sub-Saharan African Countries After the Introduction of Rotavirus Vaccines From the Vaccine Impact on Diarrhea in Africa (VIDA) Study (2023) (2)
- Tu1285 Relation Between Histologic Subtypes and Location of Gastric Adenocarcinoma. 10 Years Experience at the Hospital Juárez of Mexico (2016) (2)
- Upper Respiratory Tract Co-detection of Human Endemic Coronaviruses and High-density Pneumococcus Associated With Increased Severity Among HIV-Uninfected Children Under 5 Years Old in the PERCH Study (2021) (1)
- Widespread sharing of pneumococcal strains in a rural African setting: proximate villages are more likely to share similar strains that are carried at multiple timepoints (2022) (1)
- Prevalence of CAGA and VACA genes in helicobacter pylori from the Gambia in relation to disease phenotype (2011) (1)
- Corrigendum to "Using pneumococcal and rotavirus surveillance in vaccine decision-making: A series of case studies in Bangladesh, Armenia and the Gambia" [Vaccine 36 (2018) 4939-4943]. (2020) (1)
- A novel mosaic tetracycline resistance gene tet(S/M) detected in a multidrug-resistant pneumococcal CC230 lineage that underwent capsular switching in South Africa (2019) (1)
- The evolutionary history of the genus Chlorocebus inferred from whole genome sequencing (2014) (1)
- Comparative phylogenomics of Streptococcus pneumoniae isolated from invasive disease and nasopharyngeal carriage from West Africans (2012) (1)
- Mucosal Immune Profiles Associated with Diarrheal Disease Severity in Shigella- and Enteropathogenic Escherichia coli-Infected Children Enrolled in the Global Enteric Multicenter Study (2022) (1)
- International links between Streptococcus pneumoniae vaccine serotype 4 sequence type (ST) 801 in Northern European shipyard outbreaks of invasive pneumococcal disease (2022) (1)
- Toward Establishing Integrated, Comprehensive, and Sustainable Meningitis Surveillance in Africa to Better Inform Vaccination Strategies (2021) (1)
- Prevalence of Salmonella in Stool During the Vaccine Impact on Diarrhea in Africa (VIDA) Study, 2015–2018 (2023) (1)
- The impact of pre-hospital antibiotics on blood culture yields in a low resource setting (2016) (1)
- Norovirus Disease Among Children <5 Years in 3 Sub-Saharan African Countries: Findings From the Vaccine Impact on Diarrhea in Africa (VIDA) Study, 2015–2018 (2023) (1)
- A Streptococcus pneumoniae lineage usually associated with pneumococcal conjugate vaccine (PCV) serotypes is the most common cause of serotype 35B invasive disease in South Africa, following routine use of PCV (2022) (1)
- Publisher Correction: Ancient hybridization and strong adaptation to viruses across African vervet monkey populations (2018) (1)
- Region-specific diversification of the highly virulent serotype 1 Streptococcus pneumoniae the (2018) (1)
- Publisher Correction: Non-tuberculous Mycobacteria isolated from Pulmonary samples in sub-Saharan Africa - A Systematic Review and Meta Analyses (2018) (1)
- Genomic diversity of Escherichia coli isolates from healthy children in rural Gambia (2020) (1)
- Evolution of virulent genotypes and an emerging threat of multidrug resistant tuberculosis in Bamako, Mali (2018) (0)
- lence of Panton-Valentine Leukocidin (PVL) and Antimicrobial Resistance in Community-Acquired Clinical Staphylococcus aureus in an Urban Gambian Hospital: A 11-Year Period Retrospective Pilot Study. FRONTIERS IN CELLULAR AND INFECTION (2020) (0)
- Examining human paragonimiasis as a differential diagnosis to tuberculosis in The Gambia (2018) (0)
- Within-Host Diversity and Vertical Transmission of Group B Streptococcus Among Mother-infant Dyads in The Gambia (2019) (0)
- Pulmonary non-tuberculous mycobacteria in colonisation and disease in The Gambia (2022) (0)
- Methylation in Mycobacterium tuberculosis is lineage specific with associated mutations present globally (2018) (0)
- Corrigendum to: Pneumococcal Meningitis Outbreaks in Africa, 2000-2018: Systematic Literature Review and Meningitis Surveillance Database Analyses. (2022) (0)
- Susceptibility of Streptococcus pneumoniae causing bacterial meningitis in children in Yaoundé (Cameroon): results of a surveillance site (2019) (0)
- Incidence of macrolide–lincosamide–streptogramin B resistance amongst beta-haemolytic streptococci in The Gambia (2017) (0)
- a copy of Prevalence of Panton-Valentine Leukocidin (PVL) and antimicrobial resistance in community-acquired clinical Staphylococcus aureus in an urban Gambian hospital : a 11-year period retrospective pilot study community-acquired (2019) (0)
- Comparison of antimicrobial resistance determinants and Staphylococcal Cassette Chromosome mec elements of Staphylococci isolated from human and veterinary origin (2016) (0)
- Histo-Blood Group Antigen Null Phenotypes Associated With a Decreased Risk of Clinical Rotavirus Vaccine Failure Among Children <2 Years of Age Participating in the Vaccine Impact on Diarrhea in Africa (VIDA) Study in Kenya, Mali, and the Gambia (2023) (0)
- Additional file 2: of An outbreak of pneumococcal meningitis among older children (â Ľ5Â years) and adults after the implementation of an infant vaccination programme with the 13-valent pneumococcal conjugate vaccine in Ghana (2016) (0)
- A global genomic perspective on the multidrug-resistant Streptococcus pneumoniae 15A-CC63 sub-lineage following pneumococcal conjugate vaccine introduction. (2023) (0)
- Ascertainment of Shigella Burden in Children with Moderate to Severe Diarrhea in Low (2013) (0)
- Sensitivity of commercial interferon gamma release assays for Tuberculosis in high incidence settings-does the infecting Mycobacterial strain matter ? (2012) (0)
- Pathogen Genomics and the Potential for Understanding Diseases in the Developing World (2011) (0)
- Phylogeography and resistome of pneumococcal meningitis in West Africa before and after vaccine introduction (2021) (0)
- Associations between nasopharyngeal carriage of Group B Streptococcus and other respiratory pathogens during early infancy (2016) (0)
- Emergence of Neisseria meningitidis serogroup X in the 2017/2018 Cerebrospinal Meningitis outbreak, Nigeria (2020) (0)
- Meningococcus serogroup C clonal complex ST-10217 outbreak in Zamfara State, Northern Nigeria (2018) (0)
- RISK6, a 6-gene transcriptomic signature of TB disease risk, diagnosis and treatment response (2020) (0)
- Prevalence, Clinical Severity, and Seasonality of Adenovirus 40/41, Astrovirus, Sapovirus, and Rotavirus Among Young Children With Moderate-to-Severe Diarrhea: Results From the Vaccine Impact on Diarrhea in Africa (VIDA) Study (2023) (0)
- Motor Associations Of Iron Deposition In Patients With Parkinson’s Disease (P6.065) (2015) (0)
- Author response: The role of interspecies recombination in the evolution of antibiotic-resistant pneumococci (2021) (0)
- Effect of Age and Vaccination With a Pneumococcal Conjugate Vaccine on the Density of Pneumococcal Nasopharyngeal (2012) (0)
- Metabolite changes in blood predict the onset of tuberculosis (2018) (0)
- 768Host Gene Polymorphisms and Susceptibility to Viral Enteropathogens in Children Living in The Gambia and Kenya (2014) (0)
- Comparative genomics of Mycobacterium africanum Lineage 5 and Lineage 6 from Ghana suggests distinct ecological niches (2018) (0)
- Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition (2014) (0)
- Isolates from the Gambia pneumoniae Streptococcus High Levels of Recombination among 2011 (2011) (0)
- Bacterial genome-wide association study of hyper-virulent pneumococcal serotype 1 identifies genetic variation associated with neurotropism (2020) (0)
- An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes (2021) (0)
- , Tumani from The Gambia , West Africa Patterns among Helicobacter pylori Strains Antimicrobial Susceptibility and Resistance (2015) (0)
- High genetic diversity of Staphylococcus aureus strains colonising the nasopharynx of Gambian villagers before widespread use of pneumococcal conjugate vaccines (2016) (0)
- CHARACTERIZING VIRULENCE GENES IN THE GAMBIA EAEC STRAINS Identification of Subsets of Enteroaggregative Escherichia coli Associated with Diarrheal Disease among Under 5-Year-Old Children from Rural Gambia (2017) (0)
- Immunogenicity of antigens from the TbD 1 region present in M . africanum and missing from “ modern ” M . tuberculosis : a cross-sectional study (2010) (0)
- Di¡erences between tuberculosis cases infected with Mycobacteriumafricanum, West African type 2, relative to Euro-American Mycobacteriumtuberculosis: an update (2010) (0)
- Burden of invasive bacterial disease among children younger than 5 years of age in Togo (2017) (0)
- Rapid replacement by non-vaccine pneumococcal serotypes may mitigate the impact of the pneumococcal conjugate vaccine on nasopharyngeal bacterial ecology (2017) (0)
- Crohn’s Disease and Malignancies-An Update (2017) (0)
- Abstracts of the Eighth EDCTP Forum, 6–9 November 2016 (2017) (0)
- Identification of regulatory variants associated with genetic susceptibility to meningococcal disease (2019) (0)
- Isolation, Antibiotic Resistance and High Co-colonisation of Human Pathogens among Human-Habituated Wild Monkeys in The Gambia (2018) (0)
- Non-tuberculous Mycobacteria isolated from Pulmonary samples in sub-Saharan Africa - A Systematic Review and Meta Analyses (2017) (0)
- Whole-genome sequencing reveals anthroponotic transmission of Staphylococcus aureus to African Green monkeys in The Gambia:Human to monkeys Staphylococcus aureus transmission (2016) (0)
- Comparative Genomics of Disease and Carriage Serotype 1 Pneumococci (2022) (0)
- Epidemiology of Enteroaggregative, Enteropathogenic, and Shiga Toxin–Producing Escherichia coli Among Children Aged <5 Years in 3 Countries in Africa, 2015–2018: Vaccine Impact on Diarrhea in Africa (VIDA) Study (2023) (0)
- Gambian poultry isolates from hyperendemic group of AMR Escherichia coli strains in sub-Saharan Africa (2020) (0)
- Prevalence of classic, MLB-clade and VA-clade Astroviruses in Kenya and The Gambia (2015) (0)
- Clinical and Epidemiologic Features of Cryptosporidium-Associated Diarrheal Disease Among Young Children Living in Sub-Saharan Africa: The Vaccine Impact on Diarrhea in Africa (VIDA) Study (2023) (0)
- Impact of pre-hospital antibiotic use on blood culture yields in a low resource setting (2016) (0)
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