Marvin Whiteley
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Marvin Whiteleycomputer-science Degrees
Computer Science
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Computational Linguistics
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Machine Learning
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Artificial Intelligence
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Computer Science
Marvin Whiteley's Degrees
- PhD Computer Science Stanford University
- Masters Artificial Intelligence University of California, Berkeley
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(Suggest an Edit or Addition)Marvin Whiteley's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Gene expression in Pseudomonas aeruginosa biofilms (2001) (1144)
- Membrane vesicles traffic signals and facilitate group activities in a prokaryote (2005) (706)
- Progress in and promise of bacterial quorum sensing research (2017) (670)
- Identification of genes controlled by quorum sensing in Pseudomonas aeruginosa. (1999) (669)
- The phenazine pyocyanin is a terminal signalling factor in the quorum sensing network of Pseudomonas aeruginosa (2006) (642)
- Nutritional Cues Control Pseudomonas aeruginosa Multicellular Behavior in Cystic Fibrosis Sputum (2007) (489)
- QscR, a modulator of quorum-sensing signal synthesis and virulence in Pseudomonas aeruginosa (2001) (435)
- Cystic Fibrosis Sputum Supports Growth and Cues Key Aspects of Pseudomonas aeruginosa Physiology (2005) (395)
- Special delivery: vesicle trafficking in prokaryotes (2006) (388)
- Evidence of autoinducer activity in naturally occurring biofilms. (1997) (298)
- Metatranscriptomics of the Human Oral Microbiome during Health and Disease (2014) (298)
- Survival and Growth in the Presence of Elevated Copper: Transcriptional Profiling of Copper-Stressed Pseudomonas aeruginosa (2006) (289)
- Essential genome of Pseudomonas aeruginosa in cystic fibrosis sputum (2015) (286)
- Staphylococcus aureus Serves as an Iron Source for Pseudomonas aeruginosa during In Vivo Coculture (2005) (265)
- Regulation of Quorum Sensing by RpoS inPseudomonas aeruginosa (2000) (261)
- Community surveillance enhances Pseudomonas aeruginosa virulence during polymicrobial infection (2012) (257)
- Requirements for Pseudomonas aeruginosa Acute Burn and Chronic Surgical Wound Infection (2014) (250)
- 3D printing of microscopic bacterial communities (2013) (242)
- The biogeography of polymicrobial infection (2015) (215)
- Short-term adhesion and long-term biofouling testing of polydopamine and poly(ethylene glycol) surface modifications of membranes and feed spacers for biofouling control. (2012) (213)
- Interaction of quorum signals with outer membrane lipids: insights into prokaryotic membrane vesicle formation (2008) (210)
- Metabolite Cross-Feeding Enhances Virulence in a Model Polymicrobial Infection (2011) (190)
- Revisiting the host as a growth medium (2008) (186)
- Modulating the innate immune response by combinatorial engineering of endotoxin (2013) (179)
- Pseudomonas aeruginosa transcriptome during human infection (2018) (168)
- Identification of QuiP, the Product of Gene PA1032, as the Second Acyl-Homoserine Lactone Acylase of Pseudomonas aeruginosa PAO1 (2006) (161)
- A Bilayer-Couple Model of Bacterial Outer Membrane Vesicle Biogenesis (2012) (152)
- Oxygen levels rapidly modulate Pseudomonas aeruginosa social behaviours via substrate limitation of PqsH (2010) (151)
- Polymicrobial interactions stimulate resistance to host innate immunity through metabolite perception (2009) (150)
- Membrane-Bound Nitrate Reductase Is Required for Anaerobic Growth in Cystic Fibrosis Sputum (2007) (146)
- Uracil influences quorum sensing and biofilm formation in Pseudomonas aeruginosa and fluorouracil is an antagonist (2008) (143)
- Bacterial fight-and-flight responses enhance virulence in a polymicrobial infection (2014) (141)
- Probing Prokaryotic Social Behaviors with Bacterial “Lobster Traps” (2010) (140)
- Gram‐negative outer membrane vesicles: beyond the cell surface (2008) (136)
- Mechanisms of synergy in polymicrobial infections (2014) (135)
- Parallel Evolution in Pseudomonas aeruginosa over 39,000 Generations In Vivo (2010) (134)
- More than a signal: non-signaling properties of quorum sensing molecules. (2009) (133)
- Promoter Specificity Elements in Pseudomonas aeruginosa Quorum-Sensing-Controlled Genes (2001) (133)
- Real-time mapping of a hydrogen peroxide concentration profile across a polymicrobial bacterial biofilm using scanning electrochemical microscopy (2011) (133)
- Microbe Profile: Pseudomonas aeruginosa: opportunistic pathogen and lab rat (2019) (129)
- Protein abundances are more conserved than mRNA abundances across diverse taxa (2010) (128)
- Pseudomonas aeruginosa attachment and biofilm development in dynamic environments (2004) (126)
- Real-time monitoring of quorum sensing in 3D-printed bacterial aggregates using scanning electrochemical microscopy (2014) (123)
- Microarray Analysis of the Osmotic Stress Response in Pseudomonas aeruginosa (2006) (114)
- Going local: technologies for exploring bacterial microenvironments (2013) (114)
- Oxygen Limitation within a Bacterial Aggregate (2014) (109)
- Indole Production Promotes Escherichia coli Mixed-Culture Growth with Pseudomonas aeruginosa by Inhibiting Quorum Signaling (2011) (108)
- Pseudomonas aeruginosa Enhances Production of an Antimicrobial in Response to N-Acetylglucosamine and Peptidoglycan (2010) (106)
- A Novel Exclusion Mechanism for Carbon Resource Partitioning in Aggregatibacter actinomycetemcomitans (2007) (103)
- 4-Quinolones: smart phones of the microbial world. (2011) (100)
- Discovery of a biofilm electrocline using real-time 3D metabolite analysis (2011) (99)
- The environmental occurrence of Pseudomonas aeruginosa (2019) (98)
- Spatial determinants of quorum signaling in a Pseudomonas aeruginosa infection model (2018) (98)
- Role of Pseudomonas aeruginosa Peptidoglycan-Associated Outer Membrane Proteins in Vesicle Formation (2012) (92)
- Pseudomonas aeruginosa Aggregate Formation in an Alginate Bead Model System Exhibits In Vivo-Like Characteristics (2017) (92)
- Bundle-Forming Pili and EspA Are Involved in Biofilm Formation by Enteropathogenic Escherichia coli (2006) (87)
- Structural Requirements of the Pseudomonas Quinolone Signal for Membrane Vesicle Stimulation (2009) (86)
- cis- and trans-Regulation of miR163 and Target Genes Confers Natural Variation of Secondary Metabolites in Two Arabidopsis Species and Their Allopolyploids[W][OA] (2011) (86)
- Metabolic crosstalk regulates Porphyromonas gingivalis colonization and virulence during oral polymicrobial Infection (2017) (85)
- Spatial mapping of polymicrobial communities reveals a precise biogeography associated with human dental caries (2020) (80)
- Next-Generation “-omics” Approaches Reveal a Massive Alteration of Host RNA Metabolism during Bacteriophage Infection of Pseudomonas aeruginosa (2016) (77)
- Intrinsic Antimicrobial Resistance Determinants in the Superbug Pseudomonas aeruginosa (2015) (77)
- Bacterial Outer Membrane Vesicles in Trafficking, Communication and the Host-Pathogen Interaction (2013) (77)
- Revealing the dynamics of polymicrobial infections: implications for antibiotic therapy. (2010) (74)
- Diversification of Type VI Secretion System Toxins Reveals Ancient Antagonism among Bee Gut Microbes (2017) (72)
- Co-infecting microbes dramatically alter pathogen gene essentiality during polymicrobial infection (2017) (70)
- An Evolutionary Link between Natural Transformation and CRISPR Adaptive Immunity (2012) (70)
- Microbiota and Metatranscriptome Changes Accompanying the Onset of Gingivitis (2018) (70)
- Effects of community composition and growth rate on aquifer biofilm bacteria and their susceptibility to betadine disinfection. (2001) (68)
- Phage Inhibit Pathogen Dissemination by Targeting Bacterial Migrants in a Chronic Infection Model (2017) (59)
- Quantitative Framework for Model Evaluation in Microbiology Research Using Pseudomonas aeruginosa and Cystic Fibrosis Infection as a Test Case (2020) (59)
- Bacterial Quorum Sensing During Infection. (2020) (57)
- A Commensal Bacterium Promotes Virulence of an Opportunistic Pathogen via Cross-Respiration (2016) (57)
- The Inoculation Method Could Impact the Outcome of Microbiological Experiments (2017) (53)
- Probing Bacterial Metabolism during Infection Using High-Resolution Transcriptomics (2013) (49)
- Albumin Inhibits Pseudomonas aeruginosa Quorum Sensing and Alters Polymicrobial Interactions (2017) (44)
- Unraveling interspecies interactions across heterogeneities in complex biofilm communities. (2019) (44)
- Identification of DNA homologies among H incompatibility group plasmids by restriction enzyme digestion and Southern transfer hybridization (1983) (43)
- Characterization of Alanine Catabolism in Pseudomonas aeruginosa and Its Importance for Proliferation In Vivo (2009) (41)
- Characterization of the Pseudomonas aeruginosa Transcriptional Response to Phenylalanine and Tyrosine (2010) (41)
- Pseudomonas aeruginosa Enhances Production of a Non-Alginate Exopolysaccharide during Long-Term Colonization of the Cystic Fibrosis Lung (2013) (39)
- The importance of understanding the infectious microenvironment. (2021) (38)
- Dynamic covalent chemistry enables formation of antimicrobial peptide quaternary assemblies in a completely abiotic manner. (2017) (38)
- The social life of microbes in chronic infection. (2020) (38)
- Streptococcus gordonii programs epithelial cells to resist ZEB2 induction by Porphyromonas gingivalis (2019) (37)
- The role of two Pseudomonas aeruginosa anthranilate synthases in tryptophan and quorum signal production. (2013) (37)
- Deathly Drool: Evolutionary and Ecological Basis of Septic Bacteria in Komodo Dragon Mouths (2010) (37)
- Indole inhibition of N-acylated homoserine lactone-mediated quorum signalling is widespread in Gram-negative bacteria. (2014) (36)
- Rules of engagement: defining bacterial communication. (2012) (34)
- Pseudomonas aeruginosa Interstrain Dynamics and Selection of Hyperbiofilm Mutants during a Chronic Infection (2019) (32)
- An inexpensive chemostat apparatus for the study of microbial biofilms (1997) (31)
- Arginine Is a Critical Substrate for the Pathogenesis of Pseudomonas aeruginosa in Burn Wound Infections (2017) (31)
- Genes Contributing to Porphyromonas gingivalis Fitness in Abscess and Epithelial Cell Colonization Environments (2017) (30)
- Insights into Dynamic Polymicrobial Synergy Revealed by Time-Coursed RNA-Seq (2017) (30)
- In search of the minimal Escherichia coli genome. (2003) (29)
- Metabolism and Pathogenicity of Pseudomonas aeruginosa Infections in the Lungs of Individuals with Cystic Fibrosis. (2015) (27)
- Biochemical confirmation and characterization of the family-57-like α-amylase ofMethanococcus jannaschii (2008) (26)
- Comparison of inherently essential genes of Porphyromonas gingivalis identified in two transposon-sequencing libraries. (2015) (25)
- Bacterial biofilms predominate in both acute and chronic human lung infections (2022) (25)
- Sociomicrobiology in engineered landscapes. (2011) (25)
- Laboratory techniques for studying biofilm growth, physiology, and gene expression in flowing systems and porous media. (1999) (25)
- The two-component system BfrAB regulates expression of ABC transporters in Streptococcus gordonii and Streptococcus sanguinis. (2009) (25)
- The Staphylococcus aureus Transcriptome during Cystic Fibrosis Lung Infection (2019) (25)
- DMS3-42: the Secret to CRISPR-Dependent Biofilm Inhibition in Pseudomonas aeruginosa (2011) (25)
- Large-scale identification of pathogen essential genes during coinfection with sympatric and allopatric microbes (2019) (22)
- Nutritional Cues Control Pseudomonas aeruginosa Multicellular Behavior in Cystic Fibrosis Sputum (2009) (22)
- Microbial Community Composition Impacts Pathogen Iron Availability during Polymicrobial Infection (2016) (22)
- Implants induce a new niche for microbiomes (2018) (21)
- Protein-to-mRNA Ratios Are Conserved between Pseudomonas aeruginosa Strains (2014) (21)
- The demographic determinants of human microbiome health. (2015) (21)
- Defining Genetic Fitness Determinants and Creating Genomic Resources for an Oral Pathogen (2017) (20)
- Characterization of a Novel Riboswitch-Regulated Lysine Transporter in Aggregatibacter actinomycetemcomitans (2010) (19)
- Iron-Mediated Control of Pseudomonas aeruginosa-Staphylococcus aureus Interactions in the Cystic Fibrosis Lung (2015) (18)
- Quantifying Pseudomonas aeruginosa quinolones and examining their interactions with lipids. (2011) (18)
- Functional genomics of PycR, a LysR family transcriptional regulator essential for maintenance of Pseudomonas aeruginosa in the rat lung. (2008) (18)
- Plasmids of incompatibility group P code for the capacity to propagate bacteriophage IKe (1978) (17)
- The Microbial Olympics (2012) (17)
- Characterization of the L-Lactate Dehydrogenase from Aggregatibacter actinomycetemcomitans (2009) (15)
- A Pseudomonas aeruginosa Antimicrobial Affects the Biogeography but Not Fitness of Staphylococcus aureus during Coculture (2021) (14)
- Microbial Biofilms (2015) (13)
- Microbial Communication Superhighways (2011) (12)
- The biogeography of infection revisited (2022) (12)
- Micron Scale Spatial Measurement of the O2 Gradient Surrounding a Bacterial Biofilm in Real Time (2020) (11)
- Integration of Microbiology, Pharmacology, Immunology, and Infectious Disease Using Active Teaching and Self-Directed Learning (2019) (11)
- Bacterial tweets and podcasts #signaling#eavesdropping#microbialfightclub. (2016) (11)
- Amplicon Competition Enables End‐Point Quantitation of Nucleic Acids Following Isothermal Amplification (2017) (11)
- Corrigendum: Progress in and promise of bacterial quorum sensing research (2018) (10)
- Development of a versatile in vitro platform for studying biological systems using micro-3D printing and scanning electrochemical microscopy. (2014) (9)
- HETEROTROPHIC LIMESTONE-ADHERENT BIOFILM ISOLATES FROM THE EDWARDS AQUIFER, TEXAS (2006) (8)
- Biochemical confirmation and characterization of the family-57-like alpha-amylase of Methanococcus jannaschii. (2001) (8)
- Biofilm Growth and Illustrations of its Role in Mineral Formation (1999) (7)
- Polymicrobial Interactions of Oral Microbiota: a Historical Review and Current Perspective (2022) (6)
- Evolution of Bacterial “Frenemies” (2017) (6)
- Quorum-Sensing in Bacteria (2009) (5)
- Erratum: Nutritional cues control pseudomonas aeruginosa multicellular behavior in cystic fibrosis sputum (Journal of Bacteriology (2007) 189:22 (8079-8087)) (2009) (5)
- Role of Pseudomonas aeruginosa Glutathione Biosynthesis in Lung and Soft Tissue Infection (2020) (5)
- Signal Trafficking with Bacterial Outer Membrane Vesicles (2008) (4)
- The Pseudomonas aeruginosa Wsp pathway undergoes positive evolutionary selection during chronic infection (2018) (4)
- 'The battle for life': Pasteur, anthrax, and the first probiotics. (2014) (4)
- A quantitative framework reveals traditional laboratory growth is a highly accurate model of human oral infection (2022) (4)
- Novel, thermostable family-13-like glycoside hydrolase fromMethanococcus jannaschii (2008) (3)
- The histone-like protein AlgP regulon is distinct in mucoid and nonmucoid Pseudomonas aeruginosa and does not include alginate biosynthesis genes. (2020) (3)
- Characterization of pNC1, a small and mobilizable plasmid for use in genetic manipulation of Desulfovibrio africanus. (2009) (2)
- Erratum: The microbial olympics (Nature Reviews Microbiology (2012) 10 (583-588)) (2012) (2)
- Analyzing secondary metabolite production by 3D printed bacterial populations using scanning electrochemical microscopy (2014) (2)
- Corrigendum: Microbe Profile: Pseudomonas aeruginosa: opportunistic pathogen and lab rat (2021) (2)
- Ignoring social distancing: advances in understanding multi-species bacterial interactions (2020) (2)
- Pseudomonas aeruginosa Production of Hydrogen Cyanide Leads to Airborne Control of Staphylococcus aureus Growth in Biofilm and In Vivo Lung Environments (2022) (2)
- Faculty Opinions recommendation of Transient invaders can induce shifts between alternative stable states of microbial communities. (2020) (1)
- Faculty Opinions recommendation of Widespread genetic switches and toxicity resistance proteins for fluoride. (2012) (1)
- Porphyromonas gingivalis Tyrosine Kinase Is a Fitness Determinant in Polymicrobial Infections (2022) (1)
- Precise spatial structure impacts antimicrobial susceptibility of S. aureus in polymicrobial wound infections (2022) (1)
- Faculty Opinions recommendation of Prokaryotic single-cell RNA sequencing by in situ combinatorial indexing. (2021) (1)
- Faculty Opinions recommendation of Network of microbial and antibiotic interactions drive colonization and infection with multidrug-resistant organisms. (2017) (1)
- Show me the SNPs. How bacterial sex generates diversity in the cystic fibrosis lung. (2015) (1)
- Faculty Opinions recommendation of Evolution of high-level resistance during low-level antibiotic exposure. (2018) (0)
- Faculty Opinions recommendation of Bacterial alginate regulators and phage homologs repress CRISPR-Cas immunity. (2020) (0)
- Metabolite Sensing in a Model Polymicrobial Community (2011) (0)
- The effects of simulated aerial predator upon the schooling behavior of minnows. (1984) (0)
- Faculty Opinions recommendation of A programmable droplet-based microfluidic device applied to multiparameter analysis of single microbes and microbial communities. (2012) (0)
- Faculty Opinions recommendation of Dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits in bacteria. (2019) (0)
- Volatile hydrogen cyanide released by Pseudomonas aeruginosa provides a competitive advantage over Staphylococcus aureus in biofilm and in vivo lung environments (2022) (0)
- Mechanisms of synergy in polymicrobial infections (2014) (0)
- Proteins in Vesicle Formation Membrane Peptidoglycan-Associated Outer Role of Pseudomonas aeruginosa (2013) (0)
- Development of a Versatile, Low-Cost Electrochemical System to Study Biofilm Redox Activity at the Micron Scale (2022) (0)
- Faculty Opinions recommendation of The extracellular domain of Staphylococcus aureus LtaS binds insulin and induces insulin resistance during infection. (2018) (0)
- Metabolic crosstalk regulates Porphyromonas gingivalis colonization and virulence during oral polymicrobial infection (2017) (0)
- Faculty Opinions recommendation of Cross-resistance is modular in bacteria-phage interactions. (2018) (0)
- Comparing Protein and mRNA Abundances to Protein Expression Regulation (2011) (0)
- Faculty Opinions recommendation of Machine Learning Leveraging Genomes from Metagenomes Identifies Influential Antibiotic Resistance Genes in the Infant Gut Microbiome. (2018) (0)
- Faculty Opinions recommendation of Regulation of cell size in response to nutrient availability by fatty acid biosynthesis in Escherichia coli. (2012) (0)
- Integration of Microbiology, Pharmacology, Immunology, and Infectious Disease Using Active Teaching and Self-Directed Learning (2019) (0)
- Probing Bacterial Social Behaviors during Polymicrobial Infection (2015) (0)
- TABLE S5 Differentially expressed genes in ancestors and strain PA14. (2010) (0)
- TABLE S1 P. aeruginosa strains used in this study. (2010) (0)
- Faculty Opinions recommendation of Culture-enriched metagenomic sequencing enables in-depth profiling of the cystic fibrosis lung microbiota. (2020) (0)
- Functional dissection of polymicrobial synergy between Porphyromonas gingivalis and Streptococcus gordonii (2011) (0)
- Nutritional Cues Control Multicellular Behavior in Cystic Fibrosis Sputum. (2009) (0)
- Faculty Opinions recommendation of Density-dependent fitness benefits in quorum-sensing bacterial populations. (2012) (0)
- Probing bacterial metabolism during infection using high-resolution 1 transcriptomics 2 3 Running title: Aggregatibacter RNA-seq in vivo (2013) (0)
- Faculty Opinions recommendation of Bacteriophage trigger antiviral immunity and prevent clearance of bacterial infection. (2019) (0)
- 540 Developing a murine model for lung infection in cystic fibrosis that reflects Pseudomonas aeruginosa infection dynamics in the cystic fibrosis lung (2022) (0)
- Regulation of Vesicle Formation (2013) (0)
- Application of a quantitative framework to improve the accuracy of a bacterial infection model. (2023) (0)
- Faculty Opinions recommendation of Engineering yeast endosymbionts as a step toward the evolution of mitochondria. (2019) (0)
- The Microbial Olympics (2012) (0)
- TABLE S2 Orthologous genes from P. aeruginosa strains PAO1, PA14, PA7, and LESB58. (2010) (0)
- Impact of Growth Rate on the Protein-mRNA Ratio in Pseudomonas aeruginosa (2022) (0)
- Data from: Metatranscriptomics of the human oral microbiome during health and disease (2014) (0)
- Faculty Opinions recommendation of Staphylococcus aureus exhibits heterogeneous siderophore production within the vertebrate host. (2019) (0)
- Erratum for Klementiev et al., “Micron Scale Spatial Measurement of the O2 Gradient Surrounding a Bacterial Biofilm in Real Time” (2022) (0)
- Faculty Opinions recommendation of Parallel bacterial evolution within multiple patients identifies candidate pathogenicity genes. (2012) (0)
- Faculty Opinions recommendation of Strain- and Species-Level Variation in the Microbiome of Diabetic Wounds Is Associated with Clinical Outcomes and Therapeutic Efficacy. (2019) (0)
- Assessment of the green fluorescent protein in biofilm structure visualization using scanning confocal laser microscopy (1999) (0)
- Genes Contributing to Fitness in Abscess and Epithelial Cell Colonization Environments. (2017) (0)
- Faculty Opinions recommendation of Multicopy plasmids potentiate the evolution of antibiotic resistance in bacteria. (2016) (0)
- The chemical topology of a bacterial swarm (2018) (0)
- Solution Structure of the Integral Human Membrane Protein VDAC-1 in Detergent Micelles (2008) (0)
- Faculty Opinions recommendation of Community-wide transcriptome of the oral microbiome in subjects with and without periodontitis. (2014) (0)
- Faculty Opinions recommendation of Why do microbes exhibit weak biogeographic patterns? (2018) (0)
- Physiology aeruginosa Pseudomonas and Cues Key Aspects of Cystic Fibrosis Sputum Supports Growth (2005) (0)
- Impact of Polymicrobial Infection on Fitness of Streptococcus gordonii In Vivo (2023) (0)
- Procedes et compositions destines a moduler la formation de film biologique (2002) (0)
- Faculty Opinions recommendation of Impact of spatial organization on a novel auxotrophic interaction among soil microbes. (2018) (0)
- Faculty Opinions recommendation of Engineered symbionts activate honey bee immunity and limit pathogens. (2020) (0)
- Faculty of 1000 evaluation for Insights into the phylogeny and coding potential of microbial dark matter. (2013) (0)
- F1000Prime recommendation of Dub-seq: dual-barcoded shotgun expression library sequencing for high-throughput characterization of functional traits. (2019) (0)
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What Schools Are Affiliated With Marvin Whiteley?
Marvin Whiteley is affiliated with the following schools:
