Matthias Mann
#5,346
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German biochemist and physicist
Matthias Mann's AcademicInfluence.com Rankings
Matthias Mannbiology Degrees
Biology
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#294
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Biochemistry
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Biology Physics
Matthias Mann's Degrees
- PhD Physics University of Southern Denmark
Why Is Matthias Mann Influential?
(Suggest an Edit or Addition)According to Wikipedia, Matthias Mann is a scientist in the area of mass spectrometry and proteomics. Early life and education Born in Germany he studied mathematics and physics at the University of Göttingen. He received his Ph.D. in 1988 at Yale University where he worked in the group of John Fenn, who was later awarded the Nobel Prize in Chemistry.
Matthias Mann's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification (2008) (11710)
- Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels. (1996) (8796)
- Mass spectrometry-based proteomics (2003) (6395)
- Electrospray ionization for mass spectrometry of large biomolecules. (1989) (5759)
- Stable Isotope Labeling by Amino Acids in Cell Culture, SILAC, as a Simple and Accurate Approach to Expression Proteomics* (2002) (5483)
- The Perseus computational platform for comprehensive analysis of (prote)omics data (2016) (4606)
- Andromeda: a peptide search engine integrated into the MaxQuant environment. (2011) (4510)
- Universal sample preparation method for proteome analysis (2009) (4434)
- In-gel digestion for mass spectrometric characterization of proteins and proteomes (2006) (4425)
- Lysine Acetylation Targets Protein Complexes and Co-Regulates Major Cellular Functions (2009) (3730)
- Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry (2002) (3689)
- Global, In Vivo, and Site-Specific Phosphorylation Dynamics in Signaling Networks (2006) (3363)
- Accurate Proteome-wide Label-free Quantification by Delayed Normalization and Maximal Peptide Ratio Extraction, Termed MaxLFQ * (2014) (3305)
- Protocol for micro-purification, enrichment, pre-fractionation and storage of peptides for proteomics using StageTips (2007) (3277)
- FLICE, A Novel FADD-Homologous ICE/CED-3–like Protease, Is Recruited to the CD95 (Fas/APO-1) Death-Inducing Signaling Complex (1996) (3233)
- A generic protein purification method for protein complex characterization and proteome exploration (1999) (2879)
- Stop and go extraction tips for matrix-assisted laser desorption/ionization, nanoelectrospray, and LC/MS sample pretreatment in proteomics. (2003) (2261)
- Proteomics to study genes and genomes (2000) (2236)
- IKK-1 and IKK-2: Cytokine-Activated IκB Kinases Essential for NF-κB Activation (1997) (2047)
- Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein*S (2005) (1925)
- Proteomic analysis of post-translational modifications (2003) (1822)
- Analytical properties of the nanoelectrospray ion source. (1996) (1717)
- Femtomole sequencing of proteins from polyacrylamide gels by nano-electrospray mass spectrometry (1996) (1632)
- Mass spectrometry–based proteomics turns quantitative (2005) (1596)
- Parts per Million Mass Accuracy on an Orbitrap Mass Spectrometer via Lock Mass Injection into a C-trap*S (2005) (1453)
- Quantitative Phosphoproteomics Reveals Widespread Full Phosphorylation Site Occupancy During Mitosis (2010) (1425)
- Electrospray ionization–principles and practice (1990) (1372)
- Error-tolerant identification of peptides in sequence databases by peptide sequence tags. (1994) (1347)
- Linking genome and proteome by mass spectrometry: large-scale identification of yeast proteins from two dimensional gels. (1996) (1331)
- Proteomic characterization of the human centrosome by protein correlation profiling (2003) (1321)
- FLICE is activated by association with the CD95 death‐inducing signaling complex (DISC) (1997) (1307)
- Mass-spectrometric exploration of proteome structure and function (2016) (1292)
- Minimal, encapsulated proteomic-sample processing applied to copy-number estimation in eukaryotic cells (2014) (1277)
- Reverse transcriptase motifs in the catalytic subunit of telomerase. (1997) (1274)
- The abc's (and xyz's) of peptide sequencing (2004) (1157)
- miRNPs: a novel class of ribonucleoproteins containing numerous microRNAs. (2002) (1152)
- Analysis of proteins and proteomes by mass spectrometry. (2001) (1148)
- Nucleolar proteome dynamics (2005) (1113)
- Trypsin Cleaves Exclusively C-terminal to Arginine and Lysine Residues*S (2004) (1038)
- Glucosylation of Rho proteins by Clostridium difficile toxin B (1995) (1035)
- Electrospray Ionization for Mass Spectrometry of Large Biomolecules (1990) (1023)
- From genomics to proteomics (2003) (1014)
- The growing landscape of lysine acetylation links metabolism and cell signalling (2014) (1012)
- Directed Proteomic Analysis of the Human Nucleolus (2002) (1006)
- A Human Interactome in Three Quantitative Dimensions Organized by Stoichiometries and Abundances (2015) (977)
- Specificity in Toll-like receptor signalling through distinct effector functions of TRAF3 and TRAF6 (2006) (948)
- The Exosome: A Conserved Eukaryotic RNA Processing Complex Containing Multiple 3′→5′ Exoribonucleases (1997) (940)
- Deep proteome and transcriptome mapping of a human cancer cell line (2011) (935)
- Comprehensive mass-spectrometry-based proteome quantification of haploid versus diploid yeast (2008) (918)
- Large-scale proteomic analysis of the human spliceosome. (2002) (917)
- AU Binding Proteins Recruit the Exosome to Degrade ARE-Containing mRNAs (2001) (916)
- A practical recipe for stable isotope labeling by amino acids in cell culture (SILAC) (2006) (903)
- Higher-energy C-trap dissociation for peptide modification analysis (2007) (895)
- Electrospray and Taylor-Cone theory, Dole's beam of macromolecules at last? (1994) (874)
- Unbiased quantitative proteomics of lipid rafts reveals high specificity for signaling factors (2003) (863)
- Selective Anchoring of TFIID to Nucleosomes by Trimethylation of Histone H3 Lysine 4 (2007) (858)
- Integrated Analysis of Protein Composition, Tissue Diversity, and Gene Regulation in Mouse Mitochondria (2003) (857)
- L-Arginine Modulates T Cell Metabolism and Enhances Survival and Anti-tumor Activity (2016) (855)
- Mechanism of regulation of WAVE1-induced actin nucleation by Rac1 and Nck (2002) (849)
- Analysis of protein phosphorylation using mass spectrometry: deciphering the phosphoproteome. (2002) (847)
- A Proteome-wide, Quantitative Survey of In Vivo Ubiquitylation Sites Reveals Widespread Regulatory Roles* (2011) (844)
- Use of mass spectrometric molecular weight information to identify proteins in sequence databases. (1993) (831)
- Quantitative Phosphoproteomics Applied to the Yeast Pheromone Signaling Pathway*S (2005) (795)
- Circular non-coding RNA ANRIL modulates ribosomal RNA maturation and atherosclerosis in humans (2016) (790)
- A practical guide to the MaxQuant computational platform for SILAC-based quantitative proteomics (2009) (788)
- Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints (2010) (786)
- Axin-mediated CKI phosphorylation of beta-catenin at Ser 45: a molecular switch for the Wnt pathway. (2002) (772)
- Ultradeep human phosphoproteome reveals a distinct regulatory nature of Tyr and Ser/Thr-based signaling. (2014) (758)
- Quantitative Interaction Proteomics and Genome-wide Profiling of Epigenetic Histone Marks and Their Readers (2010) (754)
- Phosphotyrosine interactome of the ErbB-receptor kinase family (2005) (741)
- Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer* (2011) (723)
- SILAC Mouse for Quantitative Proteomics Uncovers Kindlin-3 as an Essential Factor for Red Blood Cell Function (2008) (716)
- A proteomics strategy to elucidate functional protein-protein interactions applied to EGF signaling (2003) (709)
- The minimum information about a proteomics experiment (MIAPE) (2007) (704)
- Temporal analysis of phosphotyrosine-dependent signaling networks by quantitative proteomics (2004) (698)
- Activity of DNA ligase IV stimulated by complex formation with XRCC4 protein in mammalian cells (1997) (691)
- An ESP1/PDS1 Complex Regulates Loss of Sister Chromatid Cohesion at the Metaphase to Anaphase Transition in Yeast (1998) (686)
- Phosphoproteomics reveals that Parkinson's disease kinase LRRK2 regulates a subset of Rab GTPases (2016) (680)
- Comparative Proteomic Analysis of Eleven Common Cell Lines Reveals Ubiquitous but Varying Expression of Most Proteins* (2012) (679)
- Quantitative, high-resolution proteomics for data-driven systems biology. (2011) (673)
- Analysis of the Plasmodium falciparum proteome by high-accuracy mass spectrometry (2002) (664)
- Cell-cycle-regulated association of RAD50/MRE11/NBS1 with TRF2 and human telomeres (2000) (657)
- Phosphorylation and inactivation of BAD by mitochondria-anchored protein kinase A. (1999) (650)
- Innovations: Functional and quantitative proteomics using SILAC (2006) (650)
- IKK-1 and IKK-2: cytokine-activated IkappaB kinases essential for NF-kappaB activation. (1997) (636)
- The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins (2006) (632)
- Proteome-wide Analysis of Chaperonin-Dependent Protein Folding in Escherichia coli (2005) (630)
- More than 100,000 detectable peptide species elute in single shotgun proteomics runs but the majority is inaccessible to data-dependent LC-MS/MS. (2011) (598)
- Improved resolution and very high sensitivity in MALDI TOF of matrix surfaces made by fast evaporation (1994) (594)
- Mechanism of Divergent Growth Factor Effects in Mesenchymal Stem Cell Differentiation (2005) (592)
- Kinase-selective enrichment enables quantitative phosphoproteomics of the kinome across the cell cycle. (2008) (590)
- A Novel Rab5 GDP/GTP Exchange Factor Complexed to Rabaptin-5 Links Nucleotide Exchange to Effector Recruitment and Function (1997) (585)
- Nucleosome-Interacting Proteins Regulated by DNA and Histone Methylation (2010) (574)
- Identification of a gene causing human cytochrome c oxidase deficiency by integrative genomics (2003) (574)
- Decoding signalling networks by mass spectrometry-based proteomics (2010) (573)
- A Mammalian Organelle Map by Protein Correlation Profiling (2006) (561)
- Cell type– and brain region–resolved mouse brain proteome (2015) (547)
- p70S6 kinase signals cell survival as well as growth, inactivating the pro-apoptotic molecule BAD (2001) (543)
- Quantitative proteomics reveals subset-specific viral recognition in dendritic cells. (2010) (541)
- Chromatin-remodelling factor CHRAC contains the ATPases ISWI and topoisomerase II (1997) (535)
- Decoding Human Cytomegalovirus (2012) (533)
- Gln 63 of Rho is deamidated by Escherichia coli cytotoxic necrotizing factor-1 (1997) (528)
- mRNA Silencing in Erythroid Differentiation: hnRNP K and hnRNP E1 Regulate 15-Lipoxygenase Translation from the 3′ End (1997) (527)
- Super-SILAC mix for quantitative proteomics of human tumor tissue (2010) (522)
- Combination of FASP and StageTip-based fractionation allows in-depth analysis of the hippocampal membrane proteome. (2009) (520)
- Identification of the receptor component of the IκBα–ubiquitin ligase (1998) (520)
- Interpreting mass spectra of multiply charged ions (1989) (510)
- Trans-complex formation by proteolipid channels in the terminal phase of membrane fusion (2001) (499)
- Mitotic regulation of the APC activator proteins CDC20 and CDH1. (2000) (492)
- Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry (2016) (485)
- Mass spectrometric-based approaches in quantitative proteomics. (2003) (484)
- Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex (1998) (483)
- 1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data (2012) (480)
- PHOSIDA (phosphorylation site database): management, structural and evolutionary investigation, and prediction of phosphosites (2007) (479)
- System-Wide Changes to SUMO Modifications in Response to Heat Shock (2009) (478)
- Paraspeckles A Novel Nuclear Domain (2002) (472)
- Status of Large-scale Analysis of Post-translational Modifications by Mass Spectrometry* (2013) (471)
- Protein abundance profiling of the Escherichia coli cytosol (2008) (470)
- Metabolic priming by a secreted fungal effector (2011) (465)
- A Dual Pressure Linear Ion Trap Orbitrap Instrument with Very High Sequencing Speed* (2009) (465)
- System-Wide Temporal Characterization of the Proteome and Phosphoproteome of Human Embryonic Stem Cell Differentiation (2011) (464)
- Properties of 13C-substituted arginine in stable isotope labeling by amino acids in cell culture (SILAC). (2003) (460)
- Comparative Proteomic Phenotyping of Cell Lines and Primary Cells to Assess Preservation of Cell Type-specific Functions *S⃞ (2009) (458)
- Revisiting biomarker discovery by plasma proteomics (2017) (457)
- Mass spectrometry in high-throughput proteomics: ready for the big time (2010) (456)
- Identifying and quantifying in vivo methylation sites by heavy methyl SILAC (2004) (443)
- Quantitative proteomics combined with BAC TransgeneOmics reveals in vivo protein interactions (2010) (442)
- A “Proteomic Ruler” for Protein Copy Number and Concentration Estimation without Spike-in Standards* (2014) (439)
- Mass spectrometry–based proteomics in cell biology (2010) (435)
- Plasma Proteome Profiling to Assess Human Health and Disease. (2016) (430)
- The Mex67p‐mediated nuclear mRNA export pathway is conserved from yeast to human (1999) (427)
- Is Proteomics the New Genomics? (2007) (416)
- Phosphoproteome Analysis of E. coli Reveals Evolutionary Conservation of Bacterial Ser/Thr/Tyr Phosphorylation*S (2008) (414)
- Precision proteomics: The case for high resolution and high mass accuracy (2008) (413)
- ERCC1/XPF removes the 3' overhang from uncapped telomeres and represses formation of telomeric DNA-containing double minute chromosomes. (2003) (410)
- The mitochondrial contact site complex, a determinant of mitochondrial architecture (2011) (409)
- Phosphatidylcholine synthesis for lipid droplet expansion is mediated by localized activation of CTP:phosphocholine cytidylyltransferase. (2011) (406)
- Identification of Proteins in the Postsynaptic Density Fraction by Mass Spectrometry (2000) (405)
- In-depth analysis of the membrane and cytosolic proteome of red blood cells. (2006) (405)
- Nucleolin and YB-1 are required for JNK-mediated interleukin-2 mRNA stabilization during T-cell activation. (2000) (400)
- PHOSIDA 2011: the posttranslational modification database (2010) (398)
- Uncovering Global SUMOylation Signaling Networks in a Site-Specific Manner (2014) (398)
- Rapid 'de novo' peptide sequencing by a combination of nanoelectrospray, isotopic labeling and a quadrupole/time-of-flight mass spectrometer. (1997) (397)
- Global and site-specific quantitative phosphoproteomics: principles and applications. (2009) (394)
- β1- and αv-class integrins cooperate to regulate myosin II during rigidity sensing of fibronectin-based microenvironments (2013) (392)
- The Methylosome, a 20S Complex Containing JBP1 and pICln, Produces Dimethylarginine-Modified Sm Proteins (2001) (389)
- The Serine/Threonine/Tyrosine Phosphoproteome of the Model Bacterium Bacillus subtilis*S (2007) (387)
- System-wide Perturbation Analysis with Nearly Complete Coverage of the Yeast Proteome by Single-shot Ultra HPLC Runs on a Bench Top Orbitrap* (2011) (385)
- Pre-mRNA splicing and mRNA export linked by direct interactions between UAP56 and Aly (2001) (382)
- Analysis of receptor signaling pathways by mass spectrometry: identification of vav-2 as a substrate of the epidermal and platelet-derived growth factor receptors. (2000) (381)
- Jmjd6 Catalyses Lysyl-Hydroxylation of U2AF65, a Protein Associated with RNA Splicing (2009) (377)
- Proteome Analysis of Separated Male and Female Gametocytes Reveals Novel Sex-Specific Plasmodium Biology (2005) (371)
- Online Parallel Accumulation–Serial Fragmentation (PASEF) with a Novel Trapped Ion Mobility Mass Spectrometer* (2018) (370)
- Chromatin-Remodeling Components of the BAF Complex Facilitate Reprogramming (2010) (369)
- High-throughput phosphoproteomics reveals in vivo insulin signaling dynamics (2015) (368)
- Large-scale and high-confidence proteomic analysis of human seminal plasma (2006) (367)
- Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions. (2004) (360)
- In mouse brain profilin I and profilin II associate with regulators of the endocytic pathway and actin assembly (1998) (359)
- Requirement of ATM-dependent monoubiquitylation of histone H2B for timely repair of DNA double-strand breaks. (2011) (356)
- Multilevel proteomics reveals host perturbations by SARS-CoV-2 and SARS-CoV (2020) (354)
- Global analysis of genome, transcriptome and proteome reveals the response to aneuploidy in human cells (2012) (354)
- Protein Phosphorylation: A Major Switch Mechanism for Metabolic Regulation (2015) (353)
- A Mass Spectrometry-based Proteomic Approach for Identification of Serine/Threonine-phosphorylated Proteins by Enrichment with Phospho-specific Antibodies (2002) (352)
- Identification of 491 proteins in the tear fluid proteome reveals a large number of proteases and protease inhibitors (2006) (352)
- IκB Kinase (IKK)-Associated Protein 1, a Common Component of the Heterogeneous IKK Complex (1999) (351)
- Defining the transcriptome and proteome in three functionally different human cell lines (2010) (348)
- Arginine methylation at histone H3R2 controls deposition of H3K4 trimethylation (2007) (345)
- Analysis of Nucleolar Protein Dynamics Reveals the Nuclear Degradation of Ribosomal Proteins (2007) (345)
- Regulation of G2/M events by Cdc25A through phosphorylation‐dependent modulation of its stability (2002) (345)
- Mass spectrometric analysis of the anaphase-promoting complex from yeast: identification of a subunit related to cullins. (1998) (344)
- Spindle Checkpoint Protein Xmad1 Recruits Xmad2 to Unattached Kinetochores (1998) (343)
- A Systematic Mammalian Genetic Interaction Map Reveals Pathways Underlying Ricin Susceptibility (2013) (336)
- The coming age of complete, accurate, and ubiquitous proteomes. (2013) (334)
- Ultra High Resolution Linear Ion Trap Orbitrap Mass Spectrometer (Orbitrap Elite) Facilitates Top Down LC MS/MS and Versatile Peptide Fragmentation Modes* (2011) (334)
- TNF receptor 1 genetic risk mirrors outcome of anti-TNF therapy in multiple sclerosis (2012) (332)
- An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics (2018) (331)
- Improved peptide identification in proteomics by two consecutive stages of mass spectrometric fragmentation. (2004) (330)
- Widespread Proteome Remodeling and Aggregation in Aging C. elegans (2015) (328)
- Robust Salmonella metabolism limits possibilities for new antimicrobials (2006) (328)
- Deep and Highly Sensitive Proteome Coverage by LC-MS/MS Without Prefractionation* (2011) (326)
- Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation* (2015) (326)
- Sample preparation methods for mass spectrometric peptide mapping directly from 2-DE gels. (1999) (324)
- Analysis of the Saccharomyces Spindle Pole by Matrix-assisted Laser Desorption/Ionization (MALDI) Mass Spectrometry (1998) (324)
- Cytoplasmic protein aggregates interfere with nucleocytoplasmic transport of protein and RNA (2016) (321)
- In-Vivo Quantitative Proteomics Reveals a Key Contribution of Post-Transcriptional Mechanisms to the Circadian Regulation of Liver Metabolism (2014) (319)
- Mislocalized activation of oncogenic RTKs switches downstream signaling outcomes. (2009) (317)
- Regulation of ubiquitin-binding proteins by monoubiquitination (2006) (316)
- A Novel Proteomic Screen for Peptide-Protein Interactions* (2004) (311)
- Widespread Proteome Remodeling and Aggregation in Aging C. elegans (2017) (304)
- Distinct and Overlapping Sets of SUMO-1 and SUMO-2 Target Proteins Revealed by Quantitative Proteomics*S (2006) (304)
- Systematic proteomic analysis of LRRK2-mediated Rab GTPase phosphorylation establishes a connection to ciliogenesis (2017) (301)
- Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response. (2012) (297)
- Large-scale Proteomics Analysis of the Human Kinome (2009) (296)
- In Vivo Identification of Human Small Ubiquitin-like Modifier Polymerization Sites by High Accuracy Mass Spectrometry and an in Vitro to in Vivo Strategy*S (2008) (295)
- Use of stable isotope labeling by amino acids in cell culture as a spike-in standard in quantitative proteomics (2011) (293)
- Pervasive functional translation of noncanonical human open reading frames (2020) (291)
- RGM is a repulsive guidance molecule for retinal axons (2002) (288)
- Status of complete proteome analysis by mass spectrometry: SILAC labeled yeast as a model system (2006) (288)
- Site-specific identification of SUMO-2 targets in cells reveals an inverted SUMOylation motif and a hydrophobic cluster SUMOylation motif. (2010) (287)
- Modular stop and go extraction tips with stacked disks for parallel and multidimensional Peptide fractionation in proteomics. (2006) (282)
- Microcolumns with self-assembled particle frits for proteomics. (2002) (282)
- Iodoacetamide-induced artifact mimics ubiquitination in mass spectrometry (2008) (277)
- C9orf72 FTLD/ALS-associated Gly-Ala dipeptide repeat proteins cause neuronal toxicity and Unc119 sequestration (2014) (274)
- The Q Exactive HF, a Benchtop Mass Spectrometer with a Pre-filter, High-performance Quadrupole and an Ultra-high-field Orbitrap Analyzer* (2014) (273)
- RNA and RNA Binding Proteins Participate in Early Stages of Cell Spreading through Spreading Initiation Centers (2004) (273)
- Quantitative Proteomic Comparison of Rat Mitochondria from Muscle, Heart, and Liver *S (2006) (271)
- Repo-Man recruits PP1γ to chromatin and is essential for cell viability (2006) (270)
- A genome-wide resource for the analysis of protein localisation in Drosophila (2015) (269)
- Consecutive proteolytic digestion in an enzyme reactor increases depth of proteomic and phosphoproteomic analysis. (2012) (269)
- MSQuant, an open source platform for mass spectrometry-based quantitative proteomics. (2010) (266)
- Delayed extraction improves specificity in database searches by matrix-assisted laser desorption/ionization peptide maps. (1996) (266)
- Polymerization of Purified Yeast Septins: Evidence That Organized Filament Arrays May Not Be Required for Septin Function (1998) (263)
- Brain phosphoproteome obtained by a FASP-based method reveals plasma membrane protein topology. (2010) (262)
- Detection of tyrosine phosphorylated peptides by precursor ion scanning quadrupole TOF mass spectrometry in positive ion mode. (2001) (262)
- High recovery FASP applied to the proteomic analysis of microdissected formalin fixed paraffin embedded cancer tissues retrieves known colon cancer markers. (2011) (261)
- A Proteomic Approach for Identification of Secreted Proteins during the Differentiation of 3T3-L1 Preadipocytes to Adipocytes* (2002) (261)
- Dissection of the insulin signaling pathway via quantitative phosphoproteomics (2008) (261)
- Phosphorylation Is a Central Mechanism for Circadian Control of Metabolism and Physiology. (2017) (259)
- Protein interaction screening by quantitative immunoprecipitation combined with knockdown (QUICK) (2006) (254)
- BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes (2018) (253)
- Parent ion scans of unseparated peptide mixtures. (1996) (249)
- The complex containing actin-related proteins Arp2 and Arp3 is required for the motility and integrity of yeast actin patches (1997) (247)
- Social network architecture of human immune cells unveiled by quantitative proteomics (2017) (244)
- eIF4A3 is a novel component of the exon junction complex. (2004) (240)
- SH2 Signaling in a Lower Eukaryote: A STAT Protein That Regulates Stalk Cell Differentiation in Dictyostelium (1997) (238)
- Mapping N-glycosylation sites across seven evolutionarily distant species reveals a divergent substrate proteome despite a common core machinery. (2012) (237)
- Mass Spectrometric Mapping of Linker Histone H1 Variants Reveals Multiple Acetylations, Methylations, and Phosphorylation as Well as Differences between Cell Culture and Tissue*S (2007) (236)
- ER‐60, a chaperone with thiol‐dependent reductase activity involved in MHC class I assembly (1998) (236)
- A Functional Interaction between the Survival Motor Neuron Complex and RNA Polymerase II (2001) (235)
- Systems-wide proteomic analysis in mammalian cells reveals conserved, functional protein turnover. (2011) (234)
- Identification of the receptor component of the IkappaBalpha-ubiquitin ligase. (1998) (233)
- Proteomics reveals NNMT as a master metabolic regulator of cancer associated fibroblasts (2019) (231)
- Proteomics on an Orbitrap Benchtop Mass Spectrometer Using All-ion Fragmentation* (2010) (230)
- A strategy for identifying gel-separated proteins in sequence databases by MS alone. (1996) (228)
- A Proteomic Study of SUMO-2 Target Proteins* (2004) (227)
- Identification of the components of simple protein mixtures by high-accuracy peptide mass mapping and database searching. (1997) (226)
- Absolute SILAC for accurate quantitation of proteins in complex mixtures down to the attomole level. (2008) (226)
- Ubc9 sumoylation regulates SUMO target discrimination. (2008) (226)
- The yeast protein Arc1p binds to tRNA and functions as a cofactor for the methionyl‐ and glutamyl‐tRNA synthetases. (1996) (226)
- Parallel Accumulation-Serial Fragmentation (PASEF): Multiplying Sequencing Speed and Sensitivity by Synchronized Scans in a Trapped Ion Mobility Device. (2015) (225)
- A Novel WD Repeat Protein Component of the Methylosome Binds Sm Proteins* (2002) (224)
- Cbf5p, a potential pseudouridine synthase, and Nhp2p, a putative RNA-binding protein, are present together with Gar1p in all H BOX/ACA-motif snoRNPs and constitute a common bipartite structure. (1998) (222)
- Acetylation site specificities of lysine deacetylase inhibitors in human cells (2015) (221)
- Proteomic maps of breast cancer subtypes (2016) (219)
- Extensive quantitative remodeling of the proteome between normal colon tissue and adenocarcinoma (2012) (218)
- Of protons or proteins (1988) (214)
- Stable isotope labeling by amino acids in cell culture for quantitative proteomics. (2007) (214)
- Proteome, phosphoproteome, and N-glycoproteome are quantitatively preserved in formalin-fixed paraffin-embedded tissue and analyzable by high-resolution mass spectrometry. (2010) (211)
- Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry (2000) (211)
- Proteomic Profiling of Plasmodium Sporozoite Maturation Identifies New Proteins Essential for Parasite Development and Infectivity (2008) (209)
- Differential Expression Profiling of Membrane Proteins by Quantitative Proteomics in a Human Mesenchymal Stem Cell Line Undergoing Osteoblast Differentiation (2005) (208)
- Global Effects of Kinase Inhibitors on Signaling Networks Revealed by Quantitative Phosphoproteomics* (2009) (208)
- Proteome differences between brown and white fat mitochondria reveal specialized metabolic functions. (2009) (207)
- Protein Kinase CK2 Is Coassembled with Small Conductance Ca2+-Activated K+ Channels and Regulates Channel Gating (2004) (206)
- Noncovalent interaction between Ubc9 and SUMO promotes SUMO chain formation (2007) (204)
- Deep Proteomics of Mouse Skeletal Muscle Enables Quantitation of Protein Isoforms, Metabolic Pathways, and Transcription Factors* (2015) (203)
- Quantitative proteomic analysis of single pancreatic islets (2009) (203)
- Electrospray mass spectrometry for protein characterization. (1995) (201)
- Inflammatory signaling in human Tuberculosis granulomas is spatially organized (2016) (200)
- The RING-H2 finger protein APC11 and the E2 enzyme UBC4 are sufficient to ubiquitinate substrates of the anaphase-promoting complex. (2000) (200)
- Initial Quantitative Proteomic Map of 28 Mouse Tissues Using the SILAC Mouse* (2013) (198)
- Accurate Protein Complex Retrieval by Affinity Enrichment Mass Spectrometry (AE-MS) Rather than Affinity Purification Mass Spectrometry (AP-MS)* (2014) (197)
- Visualization of LC‐MS/MS proteomics data in MaxQuant (2015) (197)
- Electrospray: Its potential and limitations as an ionization method for biomolecules (1990) (197)
- Quantitative analysis of the intra- and inter-individual variability of the normal urinary proteome. (2011) (197)
- The chicken egg yolk plasma and granule proteomes (2008) (195)
- Mapping of phosphorylation sites of gel-isolated proteins by nanoelectrospray tandem mass spectrometry: potentials and limitations. (1999) (194)
- Mtr10p functions as a nuclear import receptor for the mRNA‐binding protein Npl3p (1998) (194)
- Tyrosine Phosphorylation Mapping of the Epidermal Growth Factor Receptor Signaling Pathway* (2002) (193)
- Organellar proteomics: turning inventories into insights (2006) (193)
- A generic strategy to analyze the spatial organization of multi-protein complexes by cross-linking and mass spectrometry. (2000) (192)
- Top-down Protein Sequencing and MS3 on a Hybrid Linear Quadrupole Ion Trap-Orbitrap Mass Spectrometer*S (2006) (192)
- Functional classification of memory CD8+ T cells by CX3CR1 expression (2015) (185)
- Integral and Associated Lysosomal Membrane Proteins (2007) (184)
- Direct Proteomic Quantification of the Secretome of Activated Immune Cells (2013) (183)
- Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) and Proteome Quantitation of Mouse Embryonic Stem Cells to a Depth of 5,111 Proteins*S (2008) (182)
- Identification of the proteins of the yeast U1 small nuclear ribonucleoprotein complex by mass spectrometry. (1997) (182)
- Comparative Proteomic Analysis Identifies a Role for SUMO in Protein Quality Control (2011) (182)
- Integrated analysis of the cerebrospinal fluid peptidome and proteome. (2008) (181)
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- High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform (2018) (180)
- PROTEOMIC ANALYSIS OF POSTTRANSLATIONAL MODIFICATIONS (2003) (178)
- A map of general and specialized chromatin readers in mouse tissues generated by label-free interaction proteomics. (2013) (178)
- diaPASEF: parallel accumulation–serial fragmentation combined with data-independent acquisition (2020) (177)
- Region and cell-type resolved quantitative proteomic map of the human heart (2017) (176)
- Host cell interactome of tyrosine-phosphorylated bacterial proteins. (2009) (176)
- Bioinformatics analysis of mass spectrometry‐based proteomics data sets (2009) (175)
- Activation of the ATR kinase by the RPA-binding protein ETAA1 (2016) (175)
- Rrp47p Is an Exosome-Associated Protein Required for the 3′ Processing of Stable RNAs (2003) (175)
- Circadian control of oscillations in mitochondrial rate-limiting enzymes and nutrient utilization by PERIOD proteins (2016) (175)
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- On the Proper Use of Mass Accuracy in Proteomics* (2007) (173)
- Peptide separation with immobilized pI strips is an attractive alternative to in‐gel protein digestion for proteome analysis (2008) (171)
- Control of the terminal step of intracellular membrane fusion by protein phosphatase 1. (1999) (170)
- Time- and compartment-resolved proteome profiling of the extracellular niche in lung injury and repair (2015) (169)
- What does it mean to identify a protein in proteomics? (2002) (168)
- A SILAC-based DNA protein interaction screen that identifies candidate binding proteins to functional DNA elements. (2009) (168)
- Super-SILAC Allows Classification of Diffuse Large B-cell Lymphoma Subtypes by Their Protein Expression Profiles* (2012) (167)
- Nup93, a vertebrate homologue of yeast Nic96p, forms a complex with a novel 205-kDa protein and is required for correct nuclear pore assembly. (1997) (166)
- Comparison of ultrafiltration units for proteomic and N-glycoproteomic analysis by the filter-aided sample preparation method. (2011) (166)
- Feasibility of large-scale phosphoproteomics with higher energy collisional dissociation fragmentation. (2010) (166)
- High confidence determination of specific protein-protein interactions using quantitative mass spectrometry. (2008) (166)
- Trapped ion mobility spectrometry: A short review (2018) (165)
- Regulation of translesion synthesis DNA polymerase eta by monoubiquitination. (2010) (164)
- Human Proteinpedia enables sharing of human protein data (2008) (164)
- Proteomic Mapping of Brain Plasma Membrane Proteins*S (2005) (164)
- High susceptibility to fatty liver disease in two-pore channel 2-deficient mice (2014) (164)
- Soluble Oligomers of PolyQ-Expanded Huntingtin Target a Multiplicity of Key Cellular Factors. (2016) (164)
- p53 down-regulates SARS coronavirus replication and is targeted by the SARS-unique domain and PLpro via E3 ubiquitin ligase RCHY1 (2016) (164)
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- Gemin5, a Novel WD Repeat Protein Component of the SMN Complex That Binds Sm Proteins* (2002) (163)
- Novel and shared neoantigen derived from histone 3 variant H3.3K27M mutation for glioma T cell therapy (2018) (163)
- A proteomic fingerprint of dissolved organic carbon and of soil particles (2004) (163)
- Integrin-Linked Kinase Controls Microtubule Dynamics Required for Plasma Membrane Targeting of Caveolae (2010) (162)
- A comprehensive biochemical and genetic analysis of the yeast U1 snRNP reveals five novel proteins. (1998) (162)
- Detection of arginine dimethylated peptides by parallel precursor ion scanning mass spectrometry in positive ion mode. (2003) (161)
- A Novel LC System Embeds Analytes in Pre-formed Gradients for Rapid, Ultra-robust Proteomics* (2018) (159)
- Stable Isotope Labeling of Arabidopsis thaliana Cells and Quantitative Proteomics by Mass Spectrometry*S (2005) (159)
- Single Muscle Fiber Proteomics Reveals Fiber-Type-Specific Features of Human Muscle Aging. (2017) (158)
- Proteomics reveals the effects of sustained weight loss on the human plasma proteome (2016) (157)
- A Protein Epitope Signature Tag (PrEST) Library Allows SILAC-based Absolute Quantification and Multiplexed Determination of Protein Copy Numbers in Cell Lines* (2011) (156)
- Large-scale phosphosite quantification in tissues by a spike-in SILAC method (2011) (155)
- Quadrupole time-of-flight versus triple-quadrupole mass spectrometry for the determination of phosphopeptides by precursor ion scanning. (2001) (155)
- Proteomics reveals dynamic assembly of repair complexes during bypass of DNA cross-links (2015) (155)
- RAD21 Cooperates with Pluripotency Transcription Factors in the Maintenance of Embryonic Stem Cell Identity (2011) (155)
- The Phosphotyrosine Interactome of the Insulin Receptor Family and Its Substrates IRS-1 and IRS-2*S (2009) (153)
- Functional Repurposing Revealed by Comparing S. pombe and S. cerevisiae Genetic Interactions (2012) (152)
- Ultra-deep and quantitative saliva proteome reveals dynamics of the oral microbiome (2016) (152)
- A high confidence, manually validated human blood plasma protein reference set (2008) (152)
- Purification of Native Survival of Motor Neurons Complexes and Identification of Gemin6 as a Novel Component* (2002) (152)
- A large synthetic peptide and phosphopeptide reference library for mass spectrometry–based proteomics (2013) (151)
- Purification and characterization of the 1.0 MDa CCR4-NOT complex identifies two novel components of the complex. (2001) (150)
- The Ser/Thr/Tyr phosphoproteome of Lactococcus lactis IL1403 reveals multiply phosphorylated proteins (2008) (149)
- Analysis of High Accuracy, Quantitative Proteomics Data in the MaxQB Database* (2012) (148)
- The phosphoproteome of toll-like receptor-activated macrophages (2010) (148)
- Histone Variant H2A.Z.2 Mediates Proliferation and Drug Sensitivity of Malignant Melanoma. (2015) (148)
- Nε-Formylation of lysine is a widespread post-translational modification of nuclear proteins occurring at residues involved in regulation of chromatin function (2007) (147)
- Use of Mass Spectrometry to Study Signaling Pathways (2000) (147)
- Single muscle fiber proteomics reveals unexpected mitochondrial specialization (2015) (147)
- Identification of proteins in polyacrylamide gels by mass spectrometric peptide mapping combined with database search. (1994) (145)
- Nup116p and Nup100p are interchangeable through a conserved motif which constitutes a docking site for the mRNA transport factor Gle2p (1998) (145)
- High‐accuracy identification and bioinformatic analysis of in vivo protein phosphorylation sites in yeast (2009) (142)
- T Cell Receptor (TCR) Interacting Molecule (TRIM), A Novel Disulfide-linked Dimer Associated with the TCR–CD3–ζ Complex, Recruits Intracellular Signaling Proteins to the Plasma Membrane (1998) (142)
- Proteomic workflow for analysis of archival formalin‐fixed and paraffin‐embedded clinical samples to a depth of 10 000 proteins (2013) (141)
- Solid tumor proteome and phosphoproteome analysis by high resolution mass spectrometry. (2008) (140)
- The Impact II, a Very High-Resolution Quadrupole Time-of-Flight Instrument (QTOF) for Deep Shotgun Proteomics* (2015) (140)
- Unbiased RNA–protein interaction screen by quantitative proteomics (2009) (140)
- A Urokinase Receptor-associated Protein with Specific Collagen Binding Properties* (2000) (138)
- Cell-type-resolved quantitative proteomics of murine liver. (2014) (138)
- Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli. (2006) (134)
- The protein encoded by the proto-oncogene DEK changes the topology of chromatin and reduces the efficiency of DNA replication in a chromatin-specific manner. (2000) (134)
- Protein Correlation Profiles Identify Lipid Droplet Proteins with High Confidence* (2013) (134)
- p95-APP1 links membrane transport to Rac-mediated reorganization of actin (2000) (134)
- Bioinformatic analysis of the nucleolus. (2003) (134)
- Plasma proteome profiling discovers novel proteins associated with non‐alcoholic fatty liver disease (2019) (133)
- The Vtc proteins in vacuole fusion: coupling NSF activity to V0 trans‐complex formation (2002) (132)
- In-depth analysis of the chicken egg white proteome using an LTQ Orbitrap Velos (2011) (132)
- Thrombomucin, a Novel Cell Surface Protein that Defines Thrombocytes and Multipotent Hematopoietic Progenitors (1997) (132)
- Accurate Quantification of More Than 4000 Mouse Tissue Proteins Reveals Minimal Proteome Changes During Aging* (2010) (132)
- Clostridium novyi α-Toxin-catalyzed Incorporation of GlcNAc into Rho Subfamily Proteins* (1996) (132)
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- Evidence of Extrapancreatic Glucagon Secretion in Man (2015) (131)
- Extracting gene function from protein-protein interactions using Quantitative BAC InteraCtomics (QUBIC). (2011) (130)
- Bacterial single-stranded DNA-binding proteins are phosphorylated on tyrosine (2006) (130)
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- NOPdb: Nucleolar Proteome Database (2005) (130)
- Mass spectrometry allows direct identification of proteins in large genomes (2001) (128)
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- BASP1 Is a Transcriptional Cosuppressor for the Wilms' Tumor Suppressor Protein WT1 (2004) (127)
- Identification and Characterization of Gemin7, a Novel Component of the Survival of Motor Neuron Complex* (2002) (125)
- Structural model of a CRISPR RNA-silencing complex reveals the RNA-target cleavage activity in Cmr4. (2014) (125)
- Insights into the molecular architecture of the 26S proteasome (2009) (124)
- Loss-less Nano-fractionator for High Sensitivity, High Coverage Proteomics * (2017) (123)
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- Ultra-high sensitivity mass spectrometry quantifies single-cell proteome changes upon perturbation (2020) (122)
- A genome-wide screen for genes affecting eisosomes reveals Nce102 function in sphingolipid signaling (2009) (122)
- Proteomic Changes Resulting from Gene Copy Number Variations in Cancer Cells (2010) (122)
- C9ORF72 interaction with cofilin modulates actin dynamics in motor neurons (2016) (122)
- Identification of hnRNP P2 as TLS/FUS using electrospray mass spectrometry. (1995) (120)
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- Cloning and characterization of PAK5, a novel member of mammalianp21-activated kinase-II subfamily that is predominantly expressed in brain (2002) (117)
- In-depth Analysis of the Adipocyte Proteome by Mass Spectrometry and Bioinformatics*S (2007) (117)
- Peptide Sequencing by Mass Spectrometry for Homology Searches and Cloning of Genes (1997) (117)
- Pseudosubstrate regulation of the SCF(beta-TrCP) ubiquitin ligase by hnRNP-U. (2002) (117)
- The Proteome of Primary Prostate Cancer. (2016) (117)
- Functional genomics by mass spectrometry (2000) (117)
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- Quantitative proteomic assessment of very early cellular signaling events (2007) (115)
- Investigation of Protein-tyrosine Phosphatase 1B Function by Quantitative Proteomics*S (2008) (114)
- The CMG Helicase Bypasses DNA-Protein Cross-Links to Facilitate Their Repair (2019) (114)
- De Novo peptide sequencing by nanoelectrospray tandem mass spectrometry using triple quadrupole and quadrupole/time-of-flight instruments. (2000) (114)
- The SH2 domain interaction landscape. (2013) (114)
- Quantification of the N-glycosylated Secretome by Super-SILAC During Breast Cancer Progression and in Human Blood Samples* (2012) (113)
- Insulin-dependent interactions of proteins with GLUT4 revealed through stable isotope labeling by amino acids in cell culture (SILAC). (2006) (112)
- A systematic investigation into the nature of tryptic HCD spectra. (2012) (109)
- The sea urchin (Strongylocentrotus purpuratus) test and spine proteomes (2008) (109)
- Identification of the major membrane and core proteins of vaccinia virus by two-dimensional electrophoresis (1996) (109)
- Phosphoproteins of the chicken eggshell calcified layer (2007) (107)
- Oxidation of peptides during electrospray ionization. (1993) (107)
- Stable isotope labeling by amino acids in cell culture (SILAC) applied to quantitative proteomics of Bacillus subtilis. (2010) (106)
- Replication-Coupled DNA-Protein Crosslink Repair by SPRTN and the Proteasome in Xenopus Egg Extracts (2019) (105)
- A plasma-membrane E-MAP reveals links of the eisosome with sphingolipid metabolism and endosomal trafficking (2010) (105)
- Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts (2020) (105)
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- Novel Murine Dendritic Cell Lines: A Powerful Auxiliary Tool for Dendritic Cell Research (2012) (104)
- Systems-wide Analysis of a Phosphatase Knock-down by Quantitative Proteomics and Phosphoproteomics (2009) (103)
- Phosphorylation of Histone H3 Thr-45 Is Linked to Apoptosis*♦ (2009) (103)
- Tyrosine Phosphoproteomics of Fibroblast Growth Factor Signaling (2004) (103)
- Quantitative Proteomics Reveals That Hsp90 Inhibition Preferentially Targets Kinases and the DNA Damage Response* (2011) (103)
- Development of phospho-specific Rab protein antibodies to monitor in vivo activity of the LRRK2 Parkinson's disease kinase (2017) (102)
- Arginine-rhamnosylation as new strategy to activate translation elongation factor P. (2015) (102)
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- In vivo quantitative proteomics: the SILAC mouse. (2011) (100)
- Identification of a Novel Immunoreceptor Tyrosine-based Activation Motif-containing Molecule, STAM2, by Mass Spectrometry and Its Involvement in Growth Factor and Cytokine Receptor Signaling Pathways* (2000) (100)
- Quantitative phosphoproteome analysis of a mouse liver cell line reveals specificity of phosphatase inhibitors (2008) (99)
- HysTag—A Novel Proteomic Quantification Tool Applied to Differential Display Analysis of Membrane Proteins From Distinct Areas of Mouse Brain* (2004) (99)
- In vivo SILAC-based proteomics reveals phosphoproteome changes during mouse skin carcinogenesis. (2013) (99)
- Functional characterization of Rad18 domains for Rad6, ubiquitin, DNA binding and PCNA modification (2007) (98)
- Mlp2p, A Component of Nuclear Pore Attached Intranuclear Filaments, Associates with Nic96p* (2000) (98)
- System-wide identification of wild-type SUMO-2 conjugation sites (2015) (97)
- The proteome landscape of the kingdoms of life (2020) (97)
- A role of OCRL in clathrin-coated pit dynamics and uncoating revealed by studies of Lowe syndrome cells (2014) (96)
- Limited Environmental Serine and Glycine Confer Brain Metastasis Sensitivity to PHGDH Inhibition. (2020) (96)
- Evolutionary Constraints of Phosphorylation in Eukaryotes, Prokaryotes, and Mitochondria* (2010) (96)
- Top-down quantitation and characterization of SILAC-labeled proteins (2007) (95)
- The Ubiquitin-Proteasome System Is a Key Component of the SUMO-2/3 Cycle*S (2008) (94)
- H2A.Z.2.2 is an alternatively spliced histone H2A.Z variant that causes severe nucleosome destabilization (2012) (93)
- Quantitative shotgun proteomics: considerations for a high-quality workflow in immunology (2014) (93)
- Interaction between AP-5 and the hereditary spastic paraplegia proteins SPG11 and SPG15 (2013) (93)
- Antisense-mediated exon skipping: a therapeutic strategy for titin-based dilated cardiomyopathy (2015) (92)
- Quantitative proteomics to study mitogen-activated protein kinases. (2006) (92)
- “De novo” sequencing of peptides recovered from in-gel digested proteins by nanoelectrospray tandem mass spectrometry (2002) (92)
- The Arabidopsis Class II Sirtuin Is a Lysine Deacetylase and Interacts with Mitochondrial Energy Metabolism1[C][W][OPEN] (2014) (92)
- Multi-level Proteomics Identifies CT45 as a Chemosensitivity Mediator and Immunotherapy Target in Ovarian Cancer (2018) (91)
- Lysine acetylome profiling uncovers novel histone deacetylase substrate proteins in Arabidopsis (2017) (91)
- A new variant of the gamma subunit of renal Na,K-ATPase. Identification by mass spectrometry, antibody binding, and expression in cultured cells. (2000) (91)
- A new derivatization strategy for the analysis of phosphopeptides by precursor ion scanning in positive ion mode (2002) (91)
- Characterization of the DOC1/APC10 Subunit of the Yeast and the Human Anaphase-promoting Complex* (1999) (91)
- Spatiotemporal Proteomic Profiling of Huntington’s Disease Inclusions Reveals Widespread Loss of Protein Function (2017) (91)
- Multi-Omic Profiling Reveals Dynamics of the Phased Progression of Pluripotency (2018) (91)
- Identifying proteins and post-translational modifications by mass spectrometry. (1998) (91)
- Proteome-Wide Analysis of Disease-Associated SNPs That Show Allele-Specific Transcription Factor Binding (2012) (90)
- Euplotes telomerase contains an La motif protein produced by apparent translational frameshifting (2000) (90)
- Proteome profiling in cerebrospinal fluid reveals novel biomarkers of Alzheimer's disease (2020) (90)
- A new class of carriers that transport selective cargo from the trans Golgi network to the cell surface (2012) (89)
- In vivo brain GPCR signaling elucidated by phosphoproteomics (2018) (89)
- Organellar Proteomics and Phospho-Proteomics Reveal Subcellular Reorganization in Diet-Induced Hepatic Steatosis. (2018) (89)
- C/EBPα creates elite cells for iPSC reprogramming by upregulating Klf4 and increasing the levels of Lsd1 and Brd4 (2016) (89)
- Proteins complexed to the P1 adhesin of Mycoplasma pneumoniae. (2000) (88)
- Cell-Type- and Brain-Region-Resolved Mouse Brain Lipidome. (2020) (88)
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- In-depth proteomic analysis of a mollusc shell: acid-soluble and acid-insoluble matrix of the limpet Lottia gigantea (2012) (83)
- Plasma Proteome Profiling to detect and avoid sample‐related biases in biomarker studies (2019) (83)
- Ser/Thr/Tyr Protein Phosphorylation in the Archaeon Halobacterium salinarum—A Representative of the Third Domain of Life (2009) (83)
- Peptide sequencing of 2-DE gel-isolated proteins by nanoelectrospray tandem mass spectrometry. (1999) (82)
- Analysis of the mouse liver proteome using advanced mass spectrometry. (2007) (81)
- Dynamics in protein translation sustaining T cell preparedness (2020) (81)
- T Cells Engineered to Express a T-Cell Receptor Specific for Glypican-3 to Recognize and Kill Hepatoma Cells In Vitro and in Mice. (2015) (81)
- Proteomics-Based Comparative Mapping of the Secretomes of Human Brown and White Adipocytes Reveals EPDR1 as a Novel Batokine. (2019) (81)
- Detergent-based but gel-free method allows identification of several hundred membrane proteins in single LC-MS runs. (2008) (80)
- Comparative Proteomics of Two Life Cycle Stages of Stable Isotope-labeled Trypanosoma brucei Reveals Novel Components of the Parasite's Host Adaptation Machinery* (2012) (80)
- MaxQuant for in-depth analysis of large SILAC datasets. (2014) (79)
- The chromodomain helicase Chd4 is required for Polycomb‐mediated inhibition of astroglial differentiation (2013) (79)
- Deep Proteome Profiling Reveals Common Prevalence of MZB1‐Positive Plasma B Cells in Human Lung and Skin Fibrosis (2017) (78)
- The HLA-B*2705 peptidome. (2010) (78)
- CRL2Lrr1 promotes unloading of the vertebrate replisome from chromatin during replication termination (2017) (78)
- SHP2-interacting Transmembrane Adaptor Protein (SIT), A Novel Disulfide-linked Dimer Regulating Human T Cell Activation (1999) (77)
- Specificity and commonality of the phosphoinositide-binding proteome analyzed by quantitative mass spectrometry. (2014) (77)
- In-depth, high-accuracy proteomics of sea urchin tooth organic matrix (2008) (77)
- The mitochondrial lysine acetylome of Arabidopsis. (2014) (77)
- The AU-rich element mRNA decay-promoting activity of BRF1 is regulated by mitogen-activated protein kinase-activated protein kinase 2. (2008) (76)
- Identification of transformation sensitive proteins recorded in human two‐dimensional gel protein databases by mass spectrometric peptide mapping alone and in combination with microsequencing (1994) (76)
- The nuclear export receptor Xpo1p forms distinct complexes with NES transport substrates and the yeast Ran binding protein 1 (Yrb1p). (2001) (76)
- Computational principles of determining and improving mass precision and accuracy for proteome measurements in an Orbitrap (2009) (75)
- N-linked Glycosylation Enrichment for In-depth Cell Surface Proteomics of Diffuse Large B-cell Lymphoma Subtypes* (2013) (75)
- Quantitative interaction screen of telomeric repeat-containing RNA reveals novel TERRA regulators (2013) (75)
- Signaling Initiated by Overexpression of the Fibroblast Growth Factor Receptor-1 Investigated by Mass Spectrometry* (2003) (74)
- mRNA export through an additional cap-binding complex consisting of NCBP1 and NCBP3 (2015) (74)
- Inhibition of Adipocyte Differentiation by Resistin-like Molecule α (2002) (74)
- Machine Learning-based Classification of Diffuse Large B-cell Lymphoma Patients by Their Protein Expression Profiles (2015) (74)
- HOT1 is a mammalian direct telomere repeat-binding protein contributing to telomerase recruitment (2013) (73)
- Proteomic snapshot of the EGF-induced ubiquitin network (2011) (73)
- Automation of matrix-assisted laser desorption/ionization mass spectrometry using fuzzy logic feedback control. (1997) (72)
- Lysine acetylation in mitochondria: From inventory to function. (2017) (71)
- Absolute Proteome Analysis of Colorectal Mucosa, Adenoma, and Cancer Reveals Drastic Changes in Fatty Acid Metabolism and Plasma Membrane Transporters. (2015) (71)
- MAPU: Max-Planck Unified database of organellar, cellular, tissue and body fluid proteomes (2006) (71)
- Deep Proteomics of Breast Cancer Cells Reveals that Metformin Rewires Signaling Networks Away from a Pro-growth State. (2016) (71)
- Advancing Cell Biology Through Proteomics in Space and Time (PROSPECTS)* (2012) (70)
- The Case for Proteomics and Phospho‐Proteomics in Personalized Cancer Medicine (2019) (70)
- A systematic RNAi synthetic interaction screen reveals a link between p53 and snoRNP assembly (2011) (70)
- Proteomics and C9orf72 neuropathology identify ribosomes as poly-GR/PR interactors driving toxicity (2018) (69)
- Triple SILAC to Determine Stimulus Specific Interactions in the Wnt Pathway (2011) (69)
- Molecular basis of PRC1 targeting to Polycomb response elements by PhoRC (2016) (69)
- Quantitative Proteomics for Epigenetics (2011) (69)
- Profiling the Trypanosoma cruzi Phosphoproteome (2011) (69)
- Caenorhabditis elegans has a phosphoproteome atypical for metazoans that is enriched in developmental and sex determination proteins. (2009) (68)
- EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification (2017) (67)
- Deep Visual Proteomics defines single-cell identity and heterogeneity (2022) (67)
- Alleles of a polymorphic ETV6 binding site in DCDC2 confer risk of reading and language impairment. (2013) (67)
- Comparative analysis to guide quality improvements in proteomics (2009) (67)
- MaxQuant.Live Enables Global Targeting of More Than 25,000 Peptides (2019) (67)
- The low molecular weight proteome of Halobacterium salinarum. (2007) (66)
- OpenCell: Endogenous tagging for the cartography of human cellular organization (2022) (66)
- Aspects of the sequencing of carbohydrates and oligonucleotides by matrix-assisted laser desorption/ionization post-source decay. (1996) (66)
- A mass spectrometry–friendly database for cSNP identification (2007) (65)
- Phosphoproteomic approach for agonist-specific signaling in mouse brains: mTOR pathway is involved in κ opioid aversion (2018) (65)
- Anaphase specific auto‐cleavage of separase (2002) (65)
- Aim24 and MICOS modulate respiratory function, tafazzin-related cardiolipin modification and mitochondrial architecture (2014) (65)
- Cloning of MASK, a Novel Member of the Mammalian Germinal Center Kinase III Subfamily, with Apoptosis-inducing Properties* (2002) (64)
- Glucose-regulated and drug-perturbed phosphoproteome reveals molecular mechanisms controlling insulin secretion (2016) (64)
- A wiring of the human nucleolus. (2006) (64)
- A Stat6/Pten Axis Links Regulatory T Cells with Adipose Tissue Function. (2017) (64)
- Red blood cell (RBC) membrane proteomics--Part I: Proteomics and RBC physiology. (2010) (63)
- A Mass Spectrometry-based Proteomic Approach for Identification of Serine/ Threonine-phosphorylated Proteins by Enrichment with Phospho-specific Antibodies IDENTIFICATION OF A NOVEL PROTEIN, FRIGG, AS A PROTEIN KINASE A SUBSTRATE* (2002) (63)
- Proteomic and Genetic Analyses Demonstrate that Plasmodium berghei Blood Stages Export a Large and Diverse Repertoire of Proteins* (2012) (63)
- Plasma Proteome Profiling Reveals Dynamics of Inflammatory and Lipid Homeostasis Markers after Roux-En-Y Gastric Bypass Surgery. (2018) (62)
- Expert System for Computer-assisted Annotation of MS/MS Spectra* (2012) (62)
- Molecular Patterning of the Oikoplastic Epithelium of the Larvacean Tunicate Oikopleura dioica * (2001) (62)
- Cell biology and the genome projects a concerted strategy for characterizing multiprotein complexes by using mass spectrometry. (1997) (62)
- Ultra‐high sensitivity mass spectrometry quantifies single‐cell proteome changes upon perturbation (2022) (62)
- TRAIP is a PCNA-binding ubiquitin ligase that protects genome stability after replication stress (2016) (62)
- Induction of membrane circular dorsal ruffles requires co-signalling of integrin–ILK-complex and EGF receptor (2012) (61)
- Characterization of glycosylphosphatidylinositol-linked molecule CD55/decay-accelerating factor as the receptor for antibody SC-1-induced apoptosis. (1999) (61)
- Model for stathmin/OP18 binding to tubulin (2000) (61)
- The Proteome of Prostate Cancer Bone Metastasis Reveals Heterogeneity with Prognostic Implications (2018) (60)
- Proteomics to study DNA-bound and chromatin-associated gene regulatory complexes (2016) (60)
- Stabilization of integrin‐linked kinase by the Hsp90‐CHIP axis impacts cellular force generation, migration and the fibrotic response (2013) (60)
- Association of Yeast RNA Polymerase I with a Nucleolar Substructure Active in Rrna Synthesis and Processing (2000) (59)
- Experiences and perspectives of MALDI MS and MS/MS in proteomic research (2003) (59)
- Two Chromatin Remodeling Activities Cooperate during Activation of Hormone Responsive Promoters (2009) (59)
- Splicing factor YBX1 mediates persistence of JAK2-mutated neoplasms (2020) (58)
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- Similarity between condensed phase and gas phase chemistry: Fragmentation of peptides containing oxidized cysteine residues and its implications for proteomics (2001) (58)
- Stable Isotope Labeling by Amino Acids in Cell Culture (SILAC) and Proteome Quantitation of Mouse Embryonic Stem Cells to a Depth of 5,111 Proteins* (2020) (57)
- Quantitative proteomic analysis reveals concurrent RNA–protein interactions and identifies new RNA-binding proteins in Saccharomyces cerevisiae (2013) (57)
- Dicer-dependent and -independent Argonaute2 Protein Interaction Networks in Mammalian Cells* (2012) (57)
- PP2A delays APC/C‐dependent degradation of separase‐associated but not free securin (2014) (57)
- C2 domain-containing phosphoprotein CDP138 regulates GLUT4 insertion into the plasma membrane. (2011) (56)
- Nup116p Associates with the Nup82p-Nsp1p-Nup159p Nucleoporin Complex* (2000) (56)
- A domesticated transposon mediates the effects of a single-nucleotide polymorphism responsible for enhanced muscle growth (2010) (56)
- Deep Coverage Mouse Red Blood Cell Proteome (2008) (56)
- Secretome Analysis of Lipid-Induced Insulin Resistance in Skeletal Muscle Cells by a Combined Experimental and Bioinformatics Workflow. (2015) (56)
- Urinary proteome profiling for stratifying patients with familial Parkinson’s disease (2020) (56)
- High‐resolution serum proteome trajectories in COVID‐19 reveal patient‐specific seroconversion (2021) (56)
- Plasma proteome profiling to detect and avoid sample-related biases in biomarker studies (2018) (56)
- Phosphorylation Variation during the Cell Cycle Scales with Structural Propensities of Proteins (2013) (55)
- SILAC-Based Proteomics of Human Primary Endothelial Cell Morphogenesis Unveils Tumor Angiogenic Markers* (2013) (55)
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- Spatial single-cell mass spectrometry defines zonation of the hepatocyte proteome (2022) (4)
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- Mtr 10 p functions as a nuclear import receptor for the mRNA-binding protein Npl 3 p (2013) (4)
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- Trapped ion mobility spectrometry (TIMS) and parallel accumulation - serial fragmentation (PASEF) enable in-depth lipidomics from minimal sample amounts (2019) (4)
- HYPK promotes the activity of the Nα-acetyltransferase A complex to determine proteostasis of nonAc-X2/N-degron–containing proteins (2022) (4)
- Computational, experimental analysis reveals a novel Src family kinase in the C. elegans genome (2003) (4)
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- Identification of covalent modifications regulating immune signaling complex composition and phenotype (2020) (3)
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- PASEFTM on a timsTOF Pro defines new performance standards for shotgun proteomics with dramatic improvements in MS/MS data acquisition rates and sensitivity (2018) (3)
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- MPSA short communications (1988) (3)
- Proteomics in the Study of Liver Diseases (2018) (3)
- Protein dynamics in the cell nucleus (2008) (3)
- 23rd Sanibel Conference on Mass Spectrometry: From Fragmentation Mechanisms to Sequencing: Tandem Mass Spectrometry Based Peptide and Protein Identification (2012) (3)
- Matthias cells In-depth analysis of the membrane and cytosolic proteome of red blood (2006) (3)
- Corrigendum: Arginine-rhamnosylation as new strategy to activate translation elongation factor P. (2015) (3)
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- Red blood cells: proteomics, physiology and metabolism (2009) (3)
- Author Correction: Deep muscle-proteomic analysis of freeze-dried human muscle biopsies reveals fiber type-specific adaptations to exercise training (2021) (3)
- Protein Identification and Sequencing by Mass Spectrometry (2006) (3)
- Integrative proteomics reveals principles of dynamic phospho-signaling networks in human erythropoiesis (2020) (2)
- Erratum. Evidence of Extrapancreatic Glucagon Secretion in Man. Diabetes 2016;65:585–597 (2016) (2)
- Synchro-PASEF Allows Precursor-Specific Fragment Ion Extraction and Interference Removal in Data-Independent Acquisition (2022) (2)
- Purification of native SMN complexes and identification of Gemin 6 as a novel component (2001) (2)
- Skeletal muscle fibro-adipogenic progenitors of dystrophic mice are insensitive to NOTCH-dependent regulation of adipogenesis (2017) (2)
- In-depth proteomic analysis of a mollusc shell: acid-soluble and acid-insoluble matrix of the limpet Lottia gigantea (2012) (2)
- AlphaTims: Indexing trapped ion mobility spectrometry – time of flight data for fast and easy accession and visualization (2021) (2)
- Identification and characterization of a novel ubiquitous nucleolar protein ‘ NARR ’ encoded by a gene overlapping the rab 34 oncogene (2011) (2)
- Some biochemical applications of electrospray-magnetic sector mass spectrometry. (1991) (2)
- Cohort profile: the MUNICH Preterm and Term Clinical study (MUNICH-PreTCl), a neonatal birth cohort with focus on prenatal and postnatal determinants of infant and childhood morbidity (2021) (2)
- Laser Desorption Mass Spectrometry — Some Technical and Mechanistic Aspects (1991) (2)
- The Human Proteome (2015) (2)
- Author response: Aim24 and MICOS modulate respiratory function, tafazzin-related cardiolipin modification and mitochondrial architecture (2014) (2)
- Corrigendum to: Anaphase specific auto‐cleavage of separase (FEBS 26464) (2002) (2)
- The social architecture of an in-depth cellular protein interactome (2021) (2)
- Deep muscle-proteomic analysis of freeze-dried human muscle biopsies reveals fiber type-specific adaptations to exercise training (2021) (2)
- Reply to “Quality control requirements for the correct annotation of lipidomics data” (2021) (2)
- Limited Environmental Serine Confers Sensitivity to PHGDH Inhibition in Brain Metastasis (2020) (2)
- Stable Isotope Labeling of Arabidopsis thaliana Cells and Quantitative Proteomics by (2005) (2)
- Free radicals of isatoic anhydride and its derivatives as studied by in situ electrochemical‐ESR‐technique (1994) (2)
- Proteome Profiling of Cerebrospinal Fluid Reveals Novel Biomarker Candidates for Parkinson’s Disease (2021) (2)
- Quick and clean: Cracking sentences encoded in E. coli by LC–MS/MS, de novo sequencing, and dictionary search (2019) (2)
- Nicotinamide N-methyltransferase metabolically reprograms the stroma to promote ovarian cancer metastasis. (2018) (2)
- The structural context of PTMs at a proteome wide scale (2022) (2)
- Mechanism of replication-coupled DNA-protein crosslink proteolysis by SPRTN and the proteasome (2018) (2)
- Trapped ion mobility spectrometry and PASEF enable in-depth lipidomics from minimal sample amounts (2020) (2)
- Proteomic approach for identification of serine/threonine phosphorylated proteins (2002) (2)
- Characterization of the Velos, an Enhanced LTQ Orbitrap, for Proteomics (2009) (2)
- Protein-interaction mapping for functional proteomics (2000) (2)
- Proteomic Analysis Identifies NDUFS1 and ATP5O as Novel Markers for Survival Outcome in Prostate Cancer (2021) (2)
- Differential UBE2H-CTLH E2-E3 ubiquitylation modules regulate erythroid maturation (2022) (1)
- Proteomics comes of age: the quest for function (2000) (1)
- The proteome of prostate cancer bone metastases (2018) (1)
- Multi-Protein Complexes Studied by Mass Spectrometry (2002) (1)
- Compartment-specific overexpression of glutathione peroxidases during lung fibrosis (2014) (1)
- Nup 116 p and Nup 100 p are interchangeable through a conserved motif which constitutes a docking site for the mRNA transport factor Gle 2 p (2013) (1)
- Interconversion between Anticipatory and Active GID E3 Ubiquitin Ligase Conformations via Metabolically Driven Substrate Receptor Assembly (2019) (1)
- Phosphoprotemic Analysis of Snf5 Deficient Tumor Cells Reveals Activation of EGFr Signaling Which Is Dependent Upon Snf5 Expression (2014) (1)
- Mass spectrometry has evolved and matured to a level where it is able to assess the complexity of the human proteome. We discuss some of the expected challenges ahead and promising strategies for success. (2010) (1)
- Unscheduled DNA replication in G1 causes genome instability through head-to-tail replication fork collisions (2021) (1)
- A Plasma Membrane EMAP Reveals Links Between the Eisosome , Sphingolipid Metabolism and Endosomal Trafficking (2010) (1)
- High resolution proteomics for functional genomics (2010) (1)
- Sequencing of the First Draft of the Human Acetylome. (2020) (1)
- Deciphering Functionally Important Multiprotein Complexes by Mass Spectrometry (2000) (1)
- Informatics and Quantitative Analysis in Biological Imaging (2003) (1)
- Ethical principles, opportunities and constraints in clinical proteomics. (2021) (1)
- Proteomics of the nucleolus (2004) (1)
- Temporal Dynamics of EGF Receptor Signaling by Quantitative Proteomics (2008) (1)
- Conserved CPEs in the P 53 3 ’ Untranslated Region Influence mRNA Stability and Protein Synthesis (2009) (1)
- Proteomics separates adult-type diffuse high-grade gliomas in metabolic subgroups independent of 1p/19q codeletion and across IDH mutational status (2022) (1)
- Mass spectrometry-based proteomics turns (2005) (1)
- Leucine-973 is a crucial residue differentiating insulin and IGF-1 receptor signaling (2022) (1)
- Adverse stem cell clones within a single patient’s tumor predict clinical outcome in AML patients (2022) (1)
- Myosin binding protein H-like (MYBPHL): a promising biomarker to predict atrial damage (2019) (1)
- The proteome of hand eczema assessed by tape stripping. (2022) (1)
- University of Dundee Development of phospho-specific Rab protein antibodies to monitor in vivo activity of the LRRK 2 Parkinson ’ s disease kinase (2017) (1)
- The proteome of the calcified layer organic matrix of turkey (Meleagris gallopavo) eggshell (2013) (1)
- John Bennett Fenn, 1917–2010 (2011) (1)
- cell morphogenesis unveils tumor angiogenic markers (2013) (1)
- LifeTime and improving European healthcare through cell-based interceptive medicine (2020) (1)
- Systemwide disassembly and assembly of SCF ubiquitin ligase complexes (2023) (1)
- Immobility-associated thromboprotection is conserved across mammalian species from bear to human (2023) (1)
- Cryo-EM structures of Gid12-bound GID E3 reveal steric blockade as a mechanism inhibiting substrate ubiquitylation (2022) (1)
- Proteomics, the red blood cell and transfusion medicine (2010) (1)
- EGFR Signaling Networks in Cancer Therapy (2008) (1)
- Unscheduled DNA replication in G1 causes genome instability and damage signatures indicative of replication collisions (2022) (1)
- Mitochondrial phosphoproteomes are functionally specialized across tissues (2022) (1)
- Purification of age-distinct insulin secretory granules through antigen restriction (2020) (1)
- The H2A.Z.1/PWWP2A/NuRD-associated protein HMG20A controls early head and heart developmental transcription programs (2022) (1)
- Modular UBE2H-CTLH E2-E3 complexes regulate erythroid maturation (2022) (1)
- Analysis of RANK-c interaction partners identifies TRAF3 as a critical regulator of breast cancer aggressiveness (2022) (1)
- In vivo PDX CRISPR/Cas9 screens reveal mutual therapeutic targets to overcome heterogeneous acquired chemo-resistance (2022) (1)
- The novel coronary artery disease risk factor ADAMTS-7 modulates atherosclerotic plaque formation by degradation of TIMP-1 (2023) (1)
- Making single-cell proteomics biologically relevant (2023) (1)
- Biological Applications of Nanoelectrospray Mass Spectrometry (2003) (0)
- Methods and apparatus for electrospray ionization mass spectrometer for storing (1994) (0)
- Abstract 5899: Compartment-resolved proteomics reveal NNMT as a master metabolic regulator of cancer associated fibroblasts (2017) (0)
- Proteome Alterations In The Aging Murine Lung Affect Basement Membrane Composition (2015) (0)
- Increased Peribronchiolar and Perivascular Cysteine Protease Activity Is Associated with Bronchiolitis Obliterans Syndrome (2018) (0)
- Proteogenomic analysis reveals RNA as an important source for tumor-agnostic neoantigen identification correlating with T-cell infiltration (2022) (0)
- Plenary Lecture Proteomics technologies for signaling, clinical applications (2017) (0)
- Gain-of-function mutations amplify cytotoxic FAM111 protease activity in human genetic disorders (2020) (0)
- Identification and functional characterization of protein supercomplexes associated with Kv1.1 potassium channels (2004) (0)
- Glutathione peroxidase 3 localizes to the epithelial lining fluid and the extracellular matrix in lung fibrosis (2016) (0)
- In-depth proteomic analyses of Haliotis laevigata (greenlip abalone) nacre and prismatic organic shell matrix (2018) (0)
- Chaperone molecules concentrate together with the ubiquitin-proteasome system inside particulate cytoplasmic structures : possible role in metabolism of misfolded proteins (2015) (0)
- Cross-sectional multi-omics insight from islet and plasma samples into the progression to type 2 diabetes in metabolically profiled pancreatectomised surgical donors (2020) (0)
- Mass spectrometry resurrects protein-based approaches in functional genomics. (2000) (0)
- Expression And Regulation Of Glutathione Peroxidase 3 In Interstitial Lung Disease (2016) (0)
- Erratum to :A new derivatization strategy for the analysis of phosphopeptides by precursor ion scanning in positive ion mode (2003) (0)
- Foresight in clinical proteomics: current status, ethical considerations, and future perspectives (2023) (0)
- Fatty acid binding protein 4 is indispensable for ovarian cancer metastasis. (2018) (0)
- Peptide sequencing by metastable fragmentation in a MALDI-TOF mass spectrometer (1995) (0)
- ResourceA Wiring of the Human Nucleolus (0)
- The application of robotics and mass spectrometry to the characterisation of theDrosophila melanogaster indirect flight muscle proteome (2006) (0)
- Abstract A12: Histone variant H2A.Z.2 mediates proliferation and drug sensitivity of malignant melanoma (2015) (0)
- Study of stress granule disassembly in Saccharomyces cerevisae (2012) (0)
- TLR 3-Mediated CD 8 + Dendritic Cell Activation Is Coupled with Establishment of a Cell-Intrinsic Antiviral State SZELES , Lajos (2017) (0)
- PHAGOCYTES, GRANULOCYTES, AND MYELOPOIESIS Minimal amounts of kindlin-3 suf fi ce for basal platelet and leukocyte functions in mice (2015) (0)
- The CMG helicase bypasses DNA protein cross-links to facilitate their repair (2018) (0)
- Structures and Properties of 1,2-Dithiolylium-4-Methide, 1,2- Dithiolylium-4-olate, and 1,2-Dithiolylium-4-Thiolate: An MO Study at the HF and Post-HF Levels. (1996) (0)
- Comparative proteome analysis of secreted proteins from insulin-resistant C2C12 cells (2012) (0)
- MPSA abstracts (1994) (0)
- Examining diffrential protein expression in colorectal cancer using mass spectrometry-based proteomics approach (2013) (0)
- Abstract A15: Fatty acid binding protein 4 is indispensable for ovarian cancer metastasis (2018) (0)
- STAT3-dependent systems-level analysis reveals PDK4 as an independent predictor of biochemical recurrence in prostate cancer (2019) (0)
- Abstract B025: The proteome of prostate cancer bone metastases (2018) (0)
- Analysis of in vivo histone methylation kinetics by Heavy Methyl SILAC (2009) (0)
- Large Scale Precision Mapping of N-Glycosylation Sites (2010) (0)
- Synthesis of Oligodeoxynucleotides Containing 5‐Aminouracil and Its N‐ Acetyl Derivative. (1997) (0)
- Biomarker changes in various fluid compartments after traumatic brain injury; Temporal considerations and the involvement of the glymphatic system (2016) (0)
- Organization and dynamics of the bacterial Ser/Thr/Tyr phosphoproteome (2009) (0)
- Author response: A role of OCRL in clathrin-coated pit dynamics and uncoating revealed by studies of Lowe syndrome cells (2014) (0)
- Defining gene function via the mass spectrometric analysis of multiprotein complexes (2000) (0)
- How covalent and noncovalent interaction with SUMO can regulate the Ubl conjugation process (2007) (0)
- Spatial and temporal monitoring of neoantigen-specific T cells and T-cell receptors in a melanoma patient with secondary immune resistance to Ipilimumab (2018) (0)
- Cordon bleu protein chemistry: Techniques in protein chemistry vi edited by John W. Crabb, Academic Press, 1995. £40.00 (xix + 585 pages) ISBN 0 12 194713 0 (1995) (0)
- 195 Proteomic Analyses of ILC2 and ILC3 from Human Skin and Peripheral Blood Reveal Distinctive Phenotypes and Functions (2021) (0)
- Metabolic reprogramming of the stromal epigenome in ovarian cancer metastasis (2019) (0)
- Proteomic profiling of colorectal adenomas identifies a predictive risk signature for development of metachronous advanced colorectal neoplasia. (2023) (0)
- 580 Distinct molecular signature in melanomas from patients with recurrence (2018) (0)
- 340 Proteomic profiling of skin associated ILC and T cells reveals functional differences (2022) (0)
- THE RED BLOOD CELL RBC PROTEOME (2010) (0)
- Immune Cells Direct Proteomic Quantification of the Secretome of Activated (2014) (0)
- A standardized and reproducible workflow for membrane glass slides in routine histology and spatial proteomics (2023) (0)
- Using repulsive guidance molecule (RGM) and modulators (2001) (0)
- Antibody SC-1-induced Apoptosis Molecule CD 55 / Decay-accelerating Factor as the Receptor for Characterization of Glycosylphosphatidylinositol-linked Updated Version (1999) (0)
- 270 A spatially resolved proteomic atlas of psoriatic skin (2019) (0)
- 1598 Comparative proteomic analyses of microdissected nevi and melanoma subtypes reveal functional differences (2023) (0)
- Large scale breast cancer clinical proteomics using high-resolution mass spectrometry and super-SILAC (2014) (0)
- 262 A spatially resolved proteomic atlas of human skin and its associated immune system (2019) (0)
- 440 The Proteome of microdissected nevi- and melanoma cells reveal upregulation of Hippo-YAP and PI3K-mTOR pathway (2022) (0)
- Mobi-DIK (Ion Mobility DIA Analysis Kit): Targeted analysis software for diaPASEF data improves proteome coverage (2019) (0)
- Automated peptide sequence tag determination in stable isotope pairs of tandem mass spectra in quantitative proteomics (2002) (0)
- OS12.7.A Characterization of intra-tumoral heterogeneity and differential immune activation during malignant progression of meningiomas on single cell level (2021) (0)
- Splicing factor YBX1 mediates persistence of JAK2-mutated neoplasms (2020) (0)
- University of Dundee Analysis of Nucleolar Protein Dynamics Reveals the Nuclear Degradation of Ribosomal (2017) (0)
- THE EFFECT OF THE UPR AND NMD MECHANISMS ON THE RESPONSE TO READTHROUGH TREATMENT (2010) (0)
- Circulating BMP-1 Isoforms: Novel Diagnostic and Therapeutic Challenges for Bone Fracture Repair. (2008) (0)
- Aggrecan: A New Biomarker for Acute Thoracic Aortic Dissection (2021) (0)
- D13 Saliva biomarker discovery in Huntington’s disease (2022) (0)
- 1088 In-depth Analysis of Cancer HLA-I Peptidomes (2012) (0)
- Quantitative Proteomics Reveals That Hsp90 Inhibition Preferentially Targets Kinases and the DNA Damage Response*□S (2012) (0)
- A unified classification approach rating clinical utility of protein biomarkers across neurologic diseases (2023) (0)
- Rrp47p Is an Exosome-Associated Protein Required for the 3 (cid:2) Processing of Stable RNAs (2003) (0)
- 37: Recent developments in the technology of mass spectrometry-based clinical proteomics (2014) (0)
- McIdas localizes at centrioles and controls centriole numbers through PLK4-dependent phosphorylation (2022) (0)
- 298-OR: Disruption of Multiple Cell-Autonomous Protein Phosphorylation Networks Underlies Muscle Insulin Resistance in Type 2 Diabetes (2020) (0)
- PROTEOMICS APPROACHES TO IDENTIFYING PROTEINS INVOLVED IN ADENOMA-TO-COLORECTAL CARCINOMA PROGRESSION (2014) (0)
- Switchable electrospray ionization mass spectrometer for pulsed working (1994) (0)
- Cortical circuit alterations precede disease onset in Huntington’s disease mice (2018) (0)
- A BioID-derived proximity interactome for Protein Phosphatase PP2A (2022) (0)
- Abstracts of the XXXIst International Congress of the International Society of Blood Transfusion in joint cooperation with the 43rd Congress of the DGTI. Berlin, Germany. June 26-July 1, 2010. (2010) (0)
- The H2A.Z and NuRD associated protein HMG20A controls early head and heart developmental transcription programs (2023) (0)
- Atomic-resolution mapping of transcription factor-DNA interactions by femtosecond laser crosslinking and mass spectrometry (2020) (0)
- N-linked Glycosylation Enrichment for In-depth Cell Surface Proteomics of Diffuse Large B-cell Lymphoma Subtypes*□S (2013) (0)
- Chapter 54 – Stable Isotope Labeling by Amino Acids in Cell Culture for Quantitative Proteomics (2006) (0)
- A new variant of cystein-rich FGF receptor (CFR-1) as target for mitotic antibody with possible diagnostic value in gastric cancer (2001) (0)
- D03 Quality control for plasma and cerebrospinal fluid samples using mass spectrometry (2018) (0)
- Macrophage phosphoproteome dynamics after LPS-stimulation and its shaping by the MAPK-Phosphatase DUSP1: a SILAC-based approach (2008) (0)
- Spatio-temporal proteomics (2007) (0)
- O98 T-CELL RE-DIRECTION AGAINST GLYPICAN-3 FOR IMMUNOTHERAPY OF HEPATOCELLULAR CARCINOMA (HCC) (2014) (0)
- P64. T cell re-direction against Glypican-3 for immunotherapy of hepatocellular carcinoma (2014) (0)
- Modification of the GTP-binding RHO proteins byC. difficile toxin A and B (1995) (0)
- Analysis of protein kinases by quantitative chemical proteomics (2007) (0)
- Proceedings of the Frontiers of Retrovirology Conference 2016 (2016) (0)
- The Arabidopsis class II sirtuin is a lysine deacetylase and 35 interacts with mitochondrial energy metabolism 1 (2014) (0)
- Myosin binding protein H-like (MYBPHL) (2019) (0)
- A process for the ionization of solute atoms or molecules from liquids by electric spraying (1994) (0)
- DIA-based systems biology approach unveils novel E3-dependent responses to a metabolic shift (2020) (0)
- Corrigendum: Author correction (2002) (0)
- Pseudosubstrate regulation of the SCF (cid:1) -TrCP ubiquitin ligase by hnRNP-U (2002) (0)
- Abstract TMEM-118: ROLES OF T-LAK CELL-ORIGINATED KINASE (TOPK) AND THE MICROENVIRONMENT IN DRIVING OVARIAN CANCER PROGRESSION (2017) (0)
- Identification of early neurodegenerative pathways in progressive multiple sclerosis (2022) (0)
- Regulation of Liver Metab olism by the Endosomal GTPase Rab 5 Graphical Abstract Highlights (2015) (0)
- Cotranslational N-degron masking by acetylation promotes proteome stability in plants (2022) (0)
- Proteomic analysis of quail calcified eggshell matrix: a comparison to chicken and turkey eggshell proteomes (2015) (0)
- Author response: The Hippo pathway controls myofibril assembly and muscle fiber growth by regulating sarcomeric gene expression (2021) (0)
- Consistency across multi-omics layers in a drug-perturbed gut microbial community (2023) (0)
- 1D and 2D annotation enrichment: a statistical method integrating quantitative proteomics with complementary high-throughput data (2012) (0)
- Clinical Knowledge Graph (2020) (0)
- Towards a comprehensive description of the proteome by high resolution mass spectrometry (2012) (0)
- EASI-tag enables accurate multiplexed and interference-free MS2-based proteome quantification (2018) (0)
- Phosphorylation of serine-893 in CARD11 suppresses the formation and activity of the CARD11-BCL10-MALT1 complex in T and B cells (2022) (0)
- Abstract 5712: Nutrient scarcity confers breast cancer brain metastasis sensitivity to serine synthesis pathway inhibition (2020) (0)
- Structure of a novel telomere repeat binding protein bound to DNA (2013) (0)
- Unique ligand and kinase-independent roles of the insulin receptor in regulation of cell cycle, senescence and apoptosis (2023) (0)
- Proteomic approaches to dissect ubiquitin-like signaling pathways (2011) (0)
- a Cell-Intrinsic Antiviral State Activation Is Coupled with Establishment of Dendritic Cell + TLR3-Mediated CD8 (2015) (0)
- Title Development of phospho-specific Rab protein antibodies tomonitor in vivo activity of the LRRK 2 Parkinson ' s disease kinase (2017) (0)
- 936-P: Plasma Proteomic Profiling Delineates Treatment Efficacy of a GLP-1/GIP Coagonist in Female and Male Mice (2020) (0)
- Functional identity of hypothalamic melanocortin neurons depends on Tbx3 (2019) (0)
- Structure of SUMO modified Ubc9 (2008) (0)
- Proteomics reveals NNMT as a master metabolic regulator of cancer-associated fibroblasts (2019) (0)
- Innenrücktitelbild: Molecular Origin of Blood‐Based Infrared Spectroscopic Fingerprints (Angew. Chem. 31/2021) (2021) (0)
- JCB_200811081 1227..1242 (2009) (0)
- P32. High resolution mass spectrometry reveals the depth and diversity of HLA-I peptidomes (2014) (0)
- Region and cell-type resolved quantitative proteomic map of the human heart (2017) (0)
- Abstract 3254: Multiomics detect potential mechanisms of resistance to BRAF targeted therapy in patients with BRAFV600E mutated solid tumors (2022) (0)
- Q trap - A new tool for proteomic research (2002) (0)
- Studying TGF-beta Signaling Using a High Resolution, Quantitative Mass Spectrometric Approach (2012) (0)
- Data-independent acquisition method for ubiquitinome analysis reveals regulation of circadian biology (2021) (0)
- MAD 2 is a novel gene and its gene product forms a tight complex with Mad 1 (1998) (0)
- High-throughput and high-sensitivity phosphoproteomics with the EasyPhos platform (2018) (0)
- Accurate label-free quantification by directLFQ to compare unlimited numbers of proteomes (2023) (0)
- INTERROGATING THE RELATIONSHIP BETWEEN TRANSCRIPTION FACTOR COMPLEX BINDING AND TRANSCRIPTIONAL ACTIVATION (2013) (0)
- IMMU-41. H3.3K27M MUTATION-DERIVED NOVEL NEOANTIGEN – CHARACTERIZATION OF THE HLA-A2-BINDING EPITOPE AND A SPECIFIC T CELL RECEPTOR FOR DEVELOPMENT OF T CELL-BASED IMMUNOTHERAPY (2017) (0)
- Cortical circuit alterations precede motor impairments in Huntington’s disease mice (2019) (0)
- SILAC based quantitative proteomics to determine specific protein-protein and protein-DNA interactions (2008) (0)
- In Vivo CRISPR-Cas9 Screens in PDX Models Reveals ADAM10 As Novel Therapeutic Target in Acute Leukemia (2021) (0)
- Development, use, application of novel TIMS-Tof system (2019) (0)
- Plasma proteome profiling discovers potential biomarkers of non-alcoholic fatty liver disease (2019) (0)
- Abstract P1110: Identification Of Timp-1 As A Downstream Target Of The Coronary Artery Disease Risk Factor Adamts-7 In Atherosclerosis (2022) (0)
- A NOVEL INTERPLAY BETWEEN THE NMD MECHANISM AND ER STRESS RESPONSE AFFECTING CELLULAR HOMEOSTASIS UNDER NORMAL CONDITIONS AND IN HUMAN DISEASES (2012) (0)
- PWWP2A binds distinct chromatin moieties and interacts with an MTA1-specific core NuRD complex (2018) (0)
- Role of the extracellular matrix in cell-cell communication: a new therapeutic target? (2023) (0)
- Quantitative proteomics? (1999) (0)
- Two lipidomics data sources for the publication "Multi-omics profiling of living human pancreatic islet donors reveals heterogeneous beta cell trajectories toward type 2 diabetes" (2021) (0)
- Thursday posters (2006) (0)
- Inside Back Cover: Molecular Origin of Blood‐Based Infrared Spectroscopic Fingerprints (Angew. Chem. Int. Ed. 31/2021) (2021) (0)
- A novel chromatographic method allows online reanalyses in proteomic investigations and acquiring more information from biological samples (2009) (0)
- FREE with your next issue of Trends in Genetics A Trends Guide to Proteomics (2001) (0)
- Publisher Correction: LifeTime and improving European healthcare through cell-based interceptive medicine (2021) (0)
- BoxCar acquisition method enables single-shot proteomics at a depth of 10,000 proteins in 100 minutes (2018) (0)
- Author response: Tissue-specific modulation of gene expression in response to lowered insulin signalling in Drosophila (2021) (0)
- STAT3 restricts prostate cancer metastasis and antiandrogen resistance by controlling LKB1/CREB signaling pathway (2022) (0)
- Activity-based profiling of cullin-RING ligase networks by conformation-specific probes (2023) (0)
- 34 Identification of a novel membrane protein that interacts specifically with the uPAR-prourokinase complex (1997) (0)
- Phosphoproteomics of cellular mechanosensing reveals NFATC4 as a regulator of myofibroblast activity (2023) (0)
- An atlas of the aging lung mapped by single cell transcriptomics and deep tissue proteomics (2019) (0)
- Single fiber proteomics of respiratory chain defects in mitochondrial disorders (2018) (0)
- Insulin Resistance and Gender Define a Cell Autonomous Supernetworkof Protein Phosphorylation (2021) (0)
- Stratification Of Chronic Lung Allograft Dysfunction Phenotypes Using Proteomic Profiling Of Bronchoalveolar Lavage-Fluid (2017) (0)
- Mass Spectrometry-based Proteomics Using Q Exactive, a High-performance Benchtop Quadrupole Orbitrap Mass Spectrometer*□S (2011) (0)
- Proteomic Characterization of Acute Myeloid Leukemia (2022) (0)
- Special Issue: Post-translational Modifications (2013) (0)
- FoxK1 and FoxK2 in insulin regulation of cellular and mitochondrial metabolism (2019) (0)
- iST: a reproducible sample preparation method for in-depth proteome discovery and interaction proteomics (2017) (0)
- The proteome landscape of the kingdoms of life (2020) (0)
- Abstract 6782: Spatial transcriptomics of serous tubal intraepithelial carcinoma and its putative precursor lesions (2023) (0)
- Targeting lung inflammation and cell death for development of TB HDTs (2019) (0)
- UBL3 modification influences protein sorting to small extracellular vesicles (2018) (0)
- Dynamic Organellar Maps, a Tool to Study Proteome‐Wide Subcellular Localization Changes (2016) (0)
- IL-3-Induced Phosphorylation of BAD Through a Membrane-Targeted cAMP-Dependent Protein Kinase (1998) (0)
- Proteome reveals unknown proteins (2013) (0)
- The case for mass spectrometry-based proteomics and phospho-proteomics in personalized cancer medicine (2019) (0)
- Proteomics identifies CT45 as a mediator of chemosensitivity and immunotherapy target in ovarian cancer. (2018) (0)
- Molecular origin of blood-based infrared fingerprints (2021) (0)
- Non-covalent complex between Ubc9 and SUMO1 (2007) (0)
- The complex containing actin-related proteins Arp2 and Arp3 is required for the motility and integrity of yeast actin patches (1997) (0)
- A proteomics workflow reveals predictive autoantigens in idiopathic pulmonary fibrosis (2021) (0)
- Mid-Infrared Spectroscopy and Mass Spectrometry Combined to Build a Comprehensive Lung Cancer Fingerprint of Blood Plasma (2019) (0)
- 887: Expression and turnover of proteins govern their sampling for HLA class I presentation (2014) (0)
- Constructing a cell-type resolved human liver proteome atlas (2018) (0)
- Establishment of a T cell receptor biobank for patients with acute myeloid leukemia to be individually treated by genetically modified donor lymphocyte infusions after haploidentical stem cell transplantation (2015) (0)
- Deepproteomeandtranscriptomemappingofahuman cancer cell line (2011) (0)
- Breast cancer proteomics using high resolution mass spectrometry and super-silac (2013) (0)
- In vivo phosphoproteomics reveals pathogenic signaling changes in diabetic islets (2018) (0)
- Identification of MAZ as a novel transcription factor regulating erythropoiesis (2020) (0)
- Response Transcription During Non-stress Mediator Phosphorylation Prevents Stress Gene Regulation : (2012) (0)
- CHAPTER 172 – Protein Interaction Mapping by Coprecipitation and Mass Spectrometric Identification (2003) (0)
- Fibroblasts-derived extracellular vesicles contain SFRP1 and mediate pulmonary fibrosis (2022) (0)
- An in vivo labeling strategy with leucine-d3 for quantitative proteomics applied to the study of muscle cell differentiation (2002) (0)
- Phosphoproteome and secretome analysis reveal differences between TNF-induced apoptosis and necroptosis (2019) (0)
- Free Radicals of Isatoic Anhydride (Ia) and Its Derivatives as Studied by in situ Electrochemical-ESR-Technique (1994) (0)
- DDRE-22. TARGETING SERINE SYNTHESIS IN BRAIN METASTASIS (2021) (0)
- Comprehensive chromatin proteomics resolves functional phases of pluripotency and identifies changes in regulatory components (2022) (0)
- High resolution, quantitative mass spectrometry for near comprehensive and functional study of the proteome (2012) (0)
- S9.2 – HEROICInteraction analysis of SNPs discovered in genome-wide association studies (GWAS) (2010) (0)
- Analysis of E2 sumoylation in Saccharomyces cerevisiae (2007) (0)
- FoxK1 and FoxK2 are positive regulators for IR and IGF1R signalling in cell proliferation and metabolism (2019) (0)
- Modulation of E2 activity by interaction with SUMO (2007) (0)
- GRADIENT OFF-SET FOCUSING HPLC INSTRUMENT FOR ROBUST AND HIGH THROUGHPUT CLINICAL PROTEOMICS (2017) (0)
- Tyrosine Phosphorylation Mapping of the EGF receptor signaling pathway (2001) (0)
- Ultra High Resolution Linear Ion Trap Orbitrap Mass Spectrometer (Orbitrap Elite) Facilitates Top Down LC MS/MS and Versatile Peptide Fragmentation Modes* □ S (2012) (0)
- Proteome analysis of low molecular weight proteins in Halobacterium salinarum (2006) (0)
- Mass difference scanning of isotopically labeled peptides for protein quantification by LC-MS/MS (2002) (0)
- Insigths into the acetylation pattern of HDAC inhibitors and their potential role in HIV therapy (2016) (0)
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