Michael J. Maccoss
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Michael J. Maccossbiology Degrees
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Chemistry Biology
Michael J. Maccoss's Degrees
- PhD Chemistry University of Washington
- Bachelors Chemistry University of California, Berkeley
Why Is Michael J. Maccoss Influential?
(Suggest an Edit or Addition)Michael J. Maccoss's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Skyline: an open source document editor for creating and analyzing targeted proteomics experiments (2010) (3595)
- A Cross-platform Toolkit for Mass Spectrometry and Proteomics (2012) (2185)
- An integrated encyclopedia of DNA elements in the human genome (2012) (2080)
- Semi-supervised learning for peptide identification from shotgun proteomics datasets (2007) (1688)
- Aminoglycoside antibiotics induce bacterial biofilm formation (2005) (1157)
- Integrative Analysis of the Caenorhabditis elegans Genome by the modENCODE Project (2010) (931)
- An expansive human regulatory lexicon encoded in transcription factor footprints (2012) (806)
- A method for the comprehensive proteomic analysis of membrane proteins (2003) (627)
- Molecular architecture and assembly of the DDB1–CUL4A ubiquitin ligase machinery (2006) (618)
- Assigning significance to peptides identified by tandem mass spectrometry using decoy databases. (2008) (576)
- Shotgun identification of protein modifications from protein complexes and lens tissue (2002) (531)
- Using iRT, a normalized retention time for more targeted measurement of peptides (2012) (472)
- The ProteomeXchange consortium in 2020: enabling ‘big data’ approaches in proteomics (2019) (449)
- How many human proteoforms are there? (2018) (440)
- Overexpression of Catalase Targeted to Mitochondria Attenuates Murine Cardiac Aging (2009) (406)
- The PINK1–Parkin pathway promotes both mitophagy and selective respiratory chain turnover in vivo (2013) (404)
- The KLHL12–Cullin-3 ubiquitin ligase negatively regulates the Wnt–β-catenin pathway by targeting Dishevelled for degradation (2006) (389)
- Metabolic labeling of mammalian organisms with stable isotopes for quantitative proteomic analysis. (2004) (384)
- Platform-independent and Label-free Quantitation of Proteomic Data Using MS1 Extracted Ion Chromatograms in Skyline (2012) (381)
- Probability-based validation of protein identifications using a modified SEQUEST algorithm. (2002) (349)
- MS1, MS2, and SQT-three unified, compact, and easily parsed file formats for the storage of shotgun proteomic spectra and identifications. (2004) (333)
- Wilms Tumor Suppressor WTX Negatively Regulates WNT/ß-Catenin Signaling (2007) (322)
- The Skyline ecosystem: Informatics for quantitative mass spectrometry proteomics. (2020) (315)
- Proteomics Reveals Novel Drosophila Seminal Fluid Proteins Transferred at Mating (2008) (305)
- Posterior error probabilities and false discovery rates: two sides of the same coin. (2008) (290)
- Comparative Analysis of the Transcriptome across Distant Species (2014) (268)
- Multiplexed MS/MS for Improved Data Independent Acquisition (2013) (263)
- Wilms tumor suppressor WTX negatively regulates WNT/beta-catenin signaling. (2007) (253)
- A correlation algorithm for the automated quantitative analysis of shotgun proteomics data. (2003) (253)
- Analysis of peptide MS/MS spectra from large-scale proteomics experiments using spectrum libraries. (2006) (249)
- Altered proteome turnover and remodeling by short-term caloric restriction or rapamycin rejuvenate the aging heart (2014) (238)
- Shotgun proteomics: tools for the analysis of complex biological systems. (2002) (238)
- Fast and Accurate Protein False Discovery Rates on Large-Scale Proteomics Data Sets with Percolator 3.0 (2016) (236)
- Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry (2018) (228)
- Effect of collision energy optimization on the measurement of peptides by selected reaction monitoring (SRM) mass spectrometry. (2010) (221)
- A fast SEQUEST cross correlation algorithm. (2008) (218)
- An E3 ubiquitin ligase prevents ectopic localization of the centromeric histone H3 variant via the centromere targeting domain. (2010) (196)
- Code developments to improve the efficiency of automated MS/MS spectra interpretation. (2002) (188)
- Rapid and accurate peptide identification from tandem mass spectra. (2008) (187)
- Panorama: A Targeted Proteomics Knowledge Base (2014) (187)
- Multiplexed peptide analysis using data-independent acquisition and Skyline (2015) (178)
- Similarity among tandem mass spectra from proteomic experiments: detection, significance, and utility. (2003) (168)
- Effects of modified digestion schemes on the identification of proteins from complex mixtures. (2006) (162)
- New Regulators of Wnt/β-Catenin Signaling Revealed by Integrative Molecular Screening (2008) (159)
- A glutamate‐alanine‐leucine (EAL) domain protein of Salmonella controls bacterial survival in mice, antioxidant defence and killing of macrophages: role of cyclic diGMP (2005) (157)
- High-speed data reduction, feature detection, and MS/MS spectrum quality assessment of shotgun proteomics data sets using high-resolution mass spectrometry. (2007) (157)
- Estrogen receptor α is a putative substrate for the BRCA1 ubiquitin ligase (2007) (156)
- Large-Scale Interlaboratory Study to Develop, Analytically Validate and Apply Highly Multiplexed, Quantitative Peptide Assays to Measure Cancer-Relevant Proteins in Plasma* (2015) (151)
- Expediting the development of targeted SRM assays: using data from shotgun proteomics to automate method development. (2009) (149)
- Mitochondrial proteome remodelling in pressure overload-induced heart failure: the role of mitochondrial oxidative stress. (2012) (146)
- A Deeper Look into Comet—Implementation and Features (2015) (145)
- Dual-pressure linear ion trap mass spectrometer improving the analysis of complex protein mixtures. (2009) (143)
- Proteomic discovery of previously unannotated, rapidly evolving seminal fluid genes in Drosophila. (2009) (143)
- Integrative phenomics reveals insight into the structure of phenotypic diversity in budding yeast (2013) (142)
- PECAN: Library Free Peptide Detection for Data-Independent Acquisition Tandem Mass Spectrometry Data (2017) (137)
- Molecular mechanisms underlying genotype‐dependent responses to dietary restriction (2013) (136)
- Statistical control of peptide and protein error rates in large-scale targeted DIA analyses (2017) (136)
- Kojak: efficient analysis of chemically cross-linked protein complexes. (2015) (136)
- Skyline for Small Molecules: A Unifying Software Package for Quantitative Metabolomics. (2020) (135)
- Organellar proteomics reveals Golgi arginine dimethylation. (2004) (135)
- Distinct roles of FKF1, GIGANTEA, and ZEITLUPE proteins in the regulation of CONSTANS stability in Arabidopsis photoperiodic flowering (2014) (132)
- Structures of human insulin-degrading enzyme reveal a new substrate recognition mechanism (2006) (130)
- Deconvolution of mixture spectra from ion-trap data-independent-acquisition tandem mass spectrometry. (2010) (126)
- Global Proteomics and Pathway Analysis of Pressure-Overload–Induced Heart Failure and Its Attenuation by Mitochondrial-Targeted Peptides (2012) (125)
- Peptide-Centric Proteome Analysis: An Alternative Strategy for the Analysis of Tandem Mass Spectrometry Data* (2015) (122)
- Comparison of database search strategies for high precursor mass accuracy MS/MS data. (2010) (122)
- Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline* (2018) (119)
- Crux: Rapid Open Source Protein Tandem Mass Spectrometry Analysis (2014) (117)
- Effects of estradiol and progesterone on body composition, protein synthesis, and lipoprotein lipase in rats. (2001) (116)
- Rapid empirical discovery of optimal peptides for targeted proteomics (2011) (111)
- Efficient marginalization to compute protein posterior probabilities from shotgun mass spectrometry data. (2010) (110)
- Proteogenomic database construction driven from large scale RNA-seq data. (2014) (110)
- Quantitative Profiling of Ubiquitylated Proteins Reveals Proteasome Substrates and the Substrate Repertoire Influenced by the Rpn10 Receptor Pathway*S (2007) (105)
- The development of selected reaction monitoring methods for targeted proteomics via empirical refinement (2012) (96)
- Measurement of the isotope enrichment of stable isotope-labeled proteins using high-resolution mass spectra of peptides. (2005) (95)
- Design, Implementation and Multisite Evaluation of a System Suitability Protocol for the Quantitative Assessment of Instrument Performance in Liquid Chromatography-Multiple Reaction Monitoring-MS (LC-MRM-MS)* (2013) (93)
- Proteomics and comparative genomic investigations reveal heterogeneity in evolutionary rate of male reproductive proteins in mice (Mus domesticus). (2009) (92)
- Estrogen receptor alpha is a putative substrate for the BRCA1 ubiquitin ligase. (2007) (92)
- Rapamycin transiently induces mitochondrial remodeling to reprogram energy metabolism in old hearts (2016) (89)
- Estimating relative abundances of proteins from shotgun proteomics data (2012) (88)
- Measurement of homocysteine concentrations and stable isotope tracer enrichments in human plasma. (1999) (87)
- Maximizing Peptide Identification Events in Proteomic Workflows Using Data-Dependent Acquisition (DDA)* (2013) (87)
- Multiplexed, Scheduled, High-Resolution Parallel Reaction Monitoring on a Full Scan QqTOF Instrument with Integrated Data-Dependent and Targeted Mass Spectrometric Workflows. (2015) (84)
- Use of shotgun proteomics for the identification, confirmation, and correction of C. elegans gene annotations. (2008) (83)
- Combining 'omics and microscopy to visualize interactions between the Asian citrus psyllid vector and the Huanglongbing pathogen Candidatus Liberibacter asiaticus in the insect gut (2017) (83)
- Improving tandem mass spectrum identification using peptide retention time prediction across diverse chromatography conditions. (2007) (82)
- First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study (2019) (80)
- Rapidly evolving zona pellucida domain proteins are a major component of the vitelline envelope of abalone eggs (2006) (80)
- Effects of Column and Gradient Lengths on Peak Capacity and Peptide Identification in Nanoflow LC-MS/MS of Complex Proteomic Samples (2012) (75)
- Subacute calorie restriction and rapamycin discordantly alter mouse liver proteome homeostasis and reverse aging effects (2015) (75)
- Measurement of intracellular sulfur amino acid metabolism in humans. (2001) (75)
- Using BiblioSpec for Creating and Searching Tandem MS Peptide Libraries (2007) (75)
- Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows (2019) (72)
- Computational and Statistical Analysis of Protein Mass Spectrometry Data (2012) (71)
- Direct database searching with MALDI-PSD spectra of peptides. (1995) (71)
- DnaJ Homolog Subfamily B Member 9 Is a Putative Autoantigen in Fibrillary GN. (2017) (71)
- Staphylococcus aureus Protein A Mediates Interspecies Interactions at the Cell Surface of Pseudomonas aeruginosa (2016) (70)
- Acquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries (2020) (69)
- TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis (2017) (68)
- Improving mitochondrial function with SS-31 reverses age-related redox stress and improves exercise tolerance in aged mice. (2019) (68)
- Label-Free Quantitation of Protein Modifications by Pseudo Selected Reaction Monitoring with Internal Reference Peptides (2012) (67)
- Label-free comparative analysis of proteomics mixtures using chromatographic alignment of high-resolution muLC-MS data. (2008) (65)
- Assessing the dynamic range and peak capacity of nanoflow LC-FAIMS-MS on an ion trap mass spectrometer for proteomics. (2008) (65)
- Computationally designed high specificity inhibitors delineate the roles of BCL2 family proteins in cancer (2016) (64)
- A targeted proteomic strategy for the measurement of oral cancer candidate biomarkers in human saliva (2016) (62)
- ZP domain proteins in the abalone egg coat include a paralog of VERL under positive selection that binds lysin and 18-kDa sperm proteins. (2010) (60)
- Bruton’s Tyrosine Kinase Revealed as a Negative Regulator of Wnt–β-Catenin Signaling (2009) (59)
- Post analysis data acquisition for the iterative MS/MS sampling of proteomics mixtures. (2009) (58)
- Protein interaction networks at the host–microbe interface in Diaphorina citri, the insect vector of the citrus greening pathogen (2017) (58)
- Metabolic Interplay between the Asian Citrus Psyllid and Its Profftella Symbiont: An Achilles’ Heel of the Citrus Greening Insect Vector (2015) (58)
- A Library of Phosphoproteomic and Chromatin Signatures for Characterizing Cellular Responses to Drug Perturbations (2017) (58)
- modENCODE Project Genome by the Caenorhabditis elegans Integrative Analysis of the (2011) (57)
- Modeling peptide fragmentation with dynamic Bayesian networks for peptide identification (2008) (57)
- Identification of ejaculated proteins in the house mouse (Mus domesticus) via isotopic labeling (2011) (55)
- Posttranslational modifications in the CP43 subunit of photosystem II (2002) (55)
- Biomarkers of organophosphorus (OP) exposures in humans. (2011) (55)
- Topograph, a Software Platform for Precursor Enrichment Corrected Global Protein Turnover Measurements* (2012) (55)
- Quantitative MS for proteomics: teaching a new dog old tricks. (2005) (54)
- A Biofilm Matrix-Associated Protease Inhibitor Protects Pseudomonas aeruginosa from Proteolytic Attack (2018) (54)
- Age modifies respiratory complex I and protein homeostasis in a muscle type‐specific manner (2015) (54)
- Computational analysis of shotgun proteomics data. (2005) (53)
- The Ndc80 complex bridges two Dam1 complex rings (2017) (53)
- Substrate Trapping Proteomics Reveals Targets of the βTrCP2/FBXW11 Ubiquitin Ligase (2014) (53)
- MS1 Peptide Ion Intensity Chromatograms in MS2 (SWATH) Data Independent Acquisitions. Improving Post Acquisition Analysis of Proteomic Experiments* (2015) (51)
- Respiratory chain protein turnover rates in mice are highly heterogeneous but strikingly conserved across tissues, ages, and treatments (2015) (50)
- Human Ska complex and Ndc80 complex interact to form a load-bearing assembly that strengthens kinetochore–microtubule attachments (2018) (50)
- Comparison between procedures using SDS for shotgun proteomic analyses of complex samples (2011) (49)
- Duplication and selection on abalone sperm lysin in an allopatric population. (2007) (49)
- The molecular architecture of the Dam1 kinetochore complex is defined by cross-linking based structural modelling (2015) (47)
- An Automated Pipeline to Monitor System Performance in Liquid Chromatography-Tandem Mass Spectrometry Proteomic Experiments. (2016) (46)
- Late-life restoration of mitochondrial function reverses cardiac dysfunction in old mice (2020) (46)
- Specter: linear deconvolution for targeted analysis of data-independent acquisition mass spectrometry proteomics (2018) (45)
- High quality catalog of proteotypic peptides from human heart. (2008) (43)
- Insights into the polerovirus-plant interactome revealed by coimmunoprecipitation and mass spectrometry. (2015) (43)
- Capillary electrophoresis with Orbitrap-Velos mass spectrometry detection. (2012) (43)
- The EARP Complex and Its Interactor EIPR-1 Are Required for Cargo Sorting to Dense-Core Vesicles (2016) (43)
- Regulation of outer kinetochore Ndc80 complex-based microtubule attachments by the central kinetochore Mis12/MIND complex (2015) (42)
- Genomic and Proteomic Analysis of Schizaphis graminum Reveals Cyclophilin Proteins Are Involved in the Transmission of Cereal Yellow Dwarf Virus (2013) (40)
- Implementation of Statistical Process Control for Proteomic Experiments Via LC MS/MS (2014) (40)
- Using Skyline to Analyze Data-Containing Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry Dimensions (2018) (40)
- Mitochondrial Dysfunction in NnaD Mutant Flies and Purkinje Cell Degeneration Mice Reveals a Role for Nna Proteins in Neuronal Bioenergetics (2010) (40)
- Hyaluronan enhances wound repair and increases collagen III in aged dermal wounds (2014) (39)
- Peptide charge state determination for low-resolution tandem mass spectra (2005) (39)
- Quantitative comparison of proteomic data quality between a 2D and 3D quadrupole ion trap. (2006) (39)
- Using Data Independent Acquisition (DIA) to Model High-responding Peptides for Targeted Proteomics Experiments* (2015) (38)
- Rapamycin persistently improves cardiac function in aged, male and female mice, even following cessation of treatment (2019) (36)
- Identification and characterization of biomarkers of organophosphorus exposures in humans. (2010) (36)
- Thesaurus: quantifying phosphopeptide positional isomers (2019) (36)
- Direct Maximization of Protein Identifications from Tandem Mass Spectra* (2011) (35)
- New Guidelines for Publication of Manuscripts Describing Development and Application of Targeted Mass Spectrometry Measurements of Peptides and Proteins (2017) (35)
- A framework for installable external tools in Skyline (2014) (35)
- Autophagy accounts for approximately one-third of mitochondrial protein turnover and is protein selective (2019) (32)
- High-throughput profiling of amino acids in strains of the Saccharomyces cerevisiae deletion collection. (2010) (31)
- Discovery and Targeted LC-MS/MS of Purified Polerovirus Reveals Differences in the Virus-Host Interactome Associated with Altered Aphid Transmission (2012) (31)
- Comparison of Data Acquisition Strategies on Quadrupole Ion Trap Instrumentation for Shotgun Proteomics (2014) (30)
- Isotope signatures allow identification of chemically cross-linked peptides by mass spectrometry: a novel method to determine interresidue distances in protein structures through cross-linking. (2010) (30)
- A nested mixture model for protein identification using mass spectrometry (2010) (30)
- Using the CPTAC Assay Portal to Identify and Implement Highly Characterized Targeted Proteomics Assays. (2016) (30)
- A Mass Spectrometry Proteomics Data Management Platform* (2012) (29)
- Nitric-oxide Synthase Forms N-NO-pterin and S-NO-Cys (2010) (29)
- Quantification by nano liquid chromatography parallel reaction monitoring mass spectrometry of human apolipoprotein A‐I, apolipoprotein B, and hemoglobin A1c in dried blood spots (2017) (27)
- Proteomics: analytical tools and techniques (2001) (27)
- Mitochondrial‐targeted catalase is good for the old mouse proteome, but not for the young: ‘reverse’ antagonistic pleiotropy? (2016) (27)
- Glucocerebrosidase deficiency promotes protein aggregation through dysregulation of extracellular vesicles (2018) (26)
- A Stem-Loop Structure in Potato Leafroll Virus Open Reading Frame 5 (ORF5) Is Essential for Readthrough Translation of the Coat Protein ORF Stop Codon 700 Bases Upstream (2018) (26)
- Matrix-matched calibration curves for assessing analytical figures of merit in quantitative proteomics (2019) (26)
- Calibration Using a Single-Point External Reference Material Harmonizes Quantitative Mass Spectrometry Proteomics Data between Platforms and Laboratories. (2018) (26)
- A major deletion in the surfactant protein‐B gene causing lethal respiratory distress (2007) (26)
- Human Valacyclovir Hydrolase/Biphenyl Hydrolase-Like Protein Is a Highly Efficient Homocysteine Thiolactonase (2014) (25)
- Bindin from a sea star (2009) (25)
- Identification of Wiskott-Aldrich syndrome protein (WASP) binding sites on the branched actin filament nucleator Arp2/3 complex (2018) (25)
- Time‐resolved interaction proteomics of the GIGANTEA protein under diurnal cycles in Arabidopsis (2018) (24)
- Skyline Performs as Well as Vendor Software in the Quantitative Analysis of Serum 25-Hydroxy Vitamin D and Vitamin D Binding Globulin. (2018) (24)
- Mass spectrometry and next‐generation sequencing reveal an abundant and rapidly evolving abalone sperm protein (2013) (24)
- Candidatus Liberibacter asiaticus Minimally Alters Expression of Immunity and Metabolism Proteins in Hemolymph of Diaphorina citri, the Insect Vector of Huanglongbing. (2018) (24)
- Evidence of the biochemical basis of host virulence in the greenbug aphid, Schizaphis graminum (Homoptera: Aphididae). (2014) (23)
- Potato leafroll virus structural proteins manipulate overlapping, yet distinct protein interaction networks during infection (2015) (22)
- piNET: a versatile web platform for downstream analysis and visualization of proteomics data (2019) (21)
- Kinetochore Biorientation in Saccharomyces cerevisiae Requires a Tightly Folded Conformation of the Ndc80 Complex (2014) (20)
- The Interaction Dynamics of Two Potato Leafroll Virus Movement Proteins Affects Their Localization to the Outer Membranes of Mitochondria and Plastids (2018) (19)
- Measurement of human surfactant protein-B turnover in vivo from tracheal aspirates using targeted proteomics. (2010) (19)
- Evaluation and optimization of ion-current ratio measurements by selected-ion-monitoring mass spectrometry. (2001) (19)
- Kinetochore-associated Stu2 promotes chromosome biorientation in vivo (2019) (19)
- Hematopoietic Protein-1 Regulates the Actin Membrane Skeleton and Membrane Stability in Murine Erythrocytes (2013) (18)
- Evaluation of front-end higher energy collision-induced dissociation on a benchtop dual-pressure linear ion trap mass spectrometer for shotgun proteomics. (2012) (18)
- Garrod's fourth inborn error of metabolism solved by the identification of mutations causing pentosuria (2011) (17)
- Data-Independent Acquisition Mass Spectrometry To Quantify Protein Levels in FFPE Tumor Biopsies for Molecular Diagnostics. (2018) (17)
- Fusion Peptides from Oncogenic Chimeric Proteins as Putative Specific Biomarkers of Cancer* (2013) (16)
- Ripple: A Practical Declarative Programming Framework for Serverless Compute (2020) (16)
- Putting Humpty Dumpty Back Together Again: What Does Protein Quantification Mean in Bottom-Up Proteomics? (2022) (16)
- Stable Isotope Labeling Reveals Novel Insights Into Ubiquitin-Mediated Protein Aggregation With Age, Calorie Restriction, and Rapamycin Treatment (2018) (16)
- Avant-garde: An automated data-driven DIA data curation tool. (2019) (16)
- The ABRF Proteomics Research Group Studies: Educational exercises for qualitative and quantitative proteomic analyses (2011) (16)
- ABRF-PRG07: advanced quantitative proteomics study. (2011) (16)
- Recovery of (13)CO(2) from infused [1-(13)C]leucine and [1,2-(13)C(2)]leucine in healthy humans. (2001) (15)
- Structure of γ-tubulin small complex based on a cryo-EM map, chemical cross-links, and a remotely related structure. (2016) (15)
- Identification of peptide features in precursor spectra using Hardklör and Krönik. (2012) (15)
- The ProteomeXchange consortium at 10 years: 2023 update (2022) (15)
- Model System-Guided Protein Interaction Mapping for Virus Isolated from Phloem Tissue. (2016) (14)
- De Novo Correction of Mass Measurement Error in Low Resolution Tandem MS Spectra for Shotgun Proteomics (2012) (14)
- CM1-driven assembly and activation of yeast γ-tubulin small complex underlies microtubule nucleation (2020) (13)
- Selecting Optimal Peptides for Targeted Proteomic Experiments in Human Plasma Using In Vitro Synthesized Proteins as Analytical Standards. (2016) (13)
- Nonlinear Regression Improves Accuracy of Characterization of Multiplexed Mass Spectrometric Assays * (2018) (13)
- Highly Multiplex Targeted Proteomics Enabled by Real-Time Chromatographic Alignment. (2020) (12)
- Proteomic analysis of adducted butyrylcholinesterase for biomonitoring organophosphorus exposures. (2013) (12)
- Highly Parallel Quantification and Compartment Localization of Transcription Factors and Nuclear Proteins. (2020) (12)
- Peptidomics approaches for the identification of bioactive molecules from Diaphorina citri. (2020) (12)
- Evidence for a post-translational modification, aspartyl aldehyde, in a photosynthetic membrane protein. (2004) (12)
- Comparative proteomics reveals deficiency of SLC9A1 (sodium/hydrogen exchanger NHE1) in β‐adducin null red cells (2011) (12)
- Functional Diversification and Evolution of Antifreeze Proteins in the Antarctic Fish Lycodichthys dearborni (2010) (12)
- Mass spectrometric identification of immunogenic SARS-CoV-2 epitopes and cognate TCRs (2021) (12)
- Acquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries. (2020) (11)
- Mutual Balance of Histone Deacetylases 1 and 2 and the Acetyl Reader ATAD2 Regulates the Level of Acetylation of Histone H4 on Nascent Chromatin of Human Cells (2020) (11)
- A high voltage asymmetric waveform generator for FAIMS (2010) (11)
- Assessing Protein Sequence Database Suitability Using De Novo Sequencing* (2019) (11)
- The Ndc 80 complex bridges two Dam 1 complex rings (2017) (11)
- Novel phosphorylation states of the yeast spindle pole body (2018) (10)
- Comprehensive peptide quantification for data independent acquisition mass spectrometry using chromatogram libraries (2018) (10)
- Precursor charge state prediction for electron transfer dissociation tandem mass spectra. (2010) (10)
- Selection on Plant Male Function Genes Identifies Candidates for Reproductive Isolation of Yellow Monkeyflowers (2013) (9)
- Homopteran Vector Biomarkers for Efficient Circulative Plant Virus Transmission are Conserved in Multiple Aphid Species and the Whitefly Bemisia tabaci (2012) (9)
- Composition of Caenorhabditis elegans extracellular vesicles suggests roles in metabolism, immunity, and aging (2020) (9)
- Does Data-Independent Acquisition Data Contain Hidden Gems? A Case Study Related to Alzheimer's Disease. (2021) (9)
- Initial recommendations for performing, benchmarking and reporting single-cell proteomics experiments (2022) (9)
- Elamipretide (SS-31) treatment attenuates age-associated post-translational modifications of heart proteins (2021) (9)
- Initial Guidelines for Manuscripts Employing Data-independent Acquisition Mass Spectrometry for Proteomic Analysis (2019) (9)
- Proteomics Analysis Identifies Orthologs of Human Chitinase-Like Proteins as Inducers of Tube Morphogenesis Defects in Drosophila melanogaster (2017) (9)
- Learning score function parameters for improved spectrum identification in tandem mass spectrometry experiments. (2012) (8)
- Evidence for lysine acetylation in the coat protein of a polerovirus (2014) (8)
- Development and Application of Multidimensional Lipid Libraries to Investigate Lipidomic Dysregulation Related to Smoke Inhalation Injury Severity (2021) (8)
- A mass spectrometry-based proteomic analysis of Homer2-interacting proteins in the mouse brain. (2017) (8)
- Development and Characterization of a Novel Plug and Play Liquid Chromatography-Mass Spectrometry (LC-MS) Source That Automates Connections between the Capillary Trap, Column, and Emitter* (2013) (8)
- Differential effects of various genetic mouse models of the mechanistic target of rapamycin complex I inhibition on heart failure (2019) (8)
- Quantitative evolutionary proteomics of seminal fluid from primates with different mating systems (2018) (8)
- Rapid assessment of RNAi-mediated protein depletion by selected reaction monitoring mass spectrometry. (2013) (8)
- Mitochondrial Inorganic Polyphosphate (polyP) Is a Potent Regulator of Mammalian Bioenergetics in SH-SY5Y Cells: A Proteomics and Metabolomics Study (2022) (8)
- Affinity Purification-Mass Spectrometry Identifies a Novel Interaction between a Polerovirus and a Conserved Innate Immunity Aphid Protein that Regulates Transmission Efficiency. (2021) (7)
- Acarbose has sex-dependent and -independent effects on age-related physical function, cardiac health, and lipid biology (2020) (7)
- A proteomic approach reveals possible molecular mechanisms and roles for endosymbiotic bacteria in begomovirus transmission by whiteflies (2020) (7)
- Utilizing Skyline to analyze lipidomics data containing liquid chromatography, ion mobility spectrometry and mass spectrometry dimensions (2022) (7)
- Visualization and Dissemination of Multidimensional Proteomics Data Comparing Protein Abundance During Caenorhabditis elegans Development (2015) (7)
- Peptide Retention Time Prediction Yields Improved Tandem Mass Spectrum Identification for Diverse Chromatography Conditions (2007) (7)
- High Speed Data Reduction, Feature Detection, and MS/MS Spectrum Quality Assessment of Shotgun Proteomics Datasets Using High Resolution Mass Spectrometry (2008) (6)
- Isolation and characterization of extracellular vesicles from Caenorhabditis elegans for multi-omic analysis (2018) (6)
- The metabolome as a biomarker of aging in Drosophila melanogaster (2022) (6)
- Comparison of Unit Resolution Versus High-Resolution Accurate Mass for Parallel Reaction Monitoring. (2021) (6)
- Evaluation of a Bead-Free Coimmunoprecipitation Technique for Identification of Virus-Host Protein Interactions Using High-Resolution Mass Spectrometry. (2017) (6)
- Chromatogram libraries improve peptide detection and quantification by data independent acquisition mass spectrometry (2018) (5)
- Quantification of nuclear protein dynamics reveals chromatin remodeling during acute protein degradation (2018) (5)
- New Views of Old Proteins: Clarifying the Enigmatic Proteome (2021) (5)
- Discovery and Visualization of Uncharacterized Drug–Protein Adducts Using Mass Spectrometry (2021) (5)
- Proteomic profiling dataset of chemical perturbations in multiple biological backgrounds (2021) (5)
- Automated Trapping Column Exchanger for High-Throughput Nanoflow Liquid Chromatography. (2017) (5)
- Proteomic analyses of nucleus laminaris identified candidate targets of the fragile X mental retardation protein (2017) (5)
- Specter: linear deconvolution as a new paradigm for targeted analysis of data-independent acquisition mass spectrometry proteomics (2017) (5)
- Can we put Humpty Dumpty back together again? What does protein quantification mean in bottom-up proteomics? (2021) (4)
- Audit logs to enforce document integrity in Skyline and Panorama (2020) (4)
- Development on Citrus medica infected with ‘Candidatus Liberibacter asiaticus’ has sex-specific and -nonspecific impacts on adult Diaphorina citri and its endosymbionts (2020) (4)
- A method to determine the kinetics of multiple proteins in human infants with respiratory distress syndrome (2012) (4)
- Quantitative proteomic analysis of mammalian organisms using metabolically labeled tissues. (2007) (4)
- De novo design of high-affinity protein binders to bioactive helical peptides (2022) (4)
- Comparison of unit resolution versus high-resolution accurate mass for parallel reaction monitoring (2021) (4)
- De novo design of tyrosine and serine kinase-driven protein switches (2021) (4)
- Immunogenic SARS-CoV2 Epitopes Defined by Mass Spectrometry (2021) (4)
- Staging Encystation Progression in Giardia lamblia Using Encystation-Specific Vesicle Morphology and Associating Molecular Markers (2021) (4)
- Identification of Actin Filament-Associated Proteins in Giardia lamblia (2021) (4)
- On the feasibility and utility of exploiting real time database search to improve adaptive peak selection (2012) (4)
- Time-resolved Interaction Proteomics of the Putative Scaffold Protein GIGANTEA in Arabidopsis thaliana (2017) (3)
- The EARP Complex and its Interactor EIPR-1 are Required for 2 Cargo Sorting to Dense-Core Vesicles 3 4 Short title : The EARP Complex Controls Dense-Core-Vesicle Biogenesis (2016) (3)
- Cullin-independent recognition of HHARI substrates by a dynamic RBR catalytic domain. (2022) (3)
- Correction: Proteomics Reveals Novel Drosophila Seminal Fluid Proteins Transferred at Mating (2009) (3)
- Nitric-oxide Synthase Forms N-NO-pterin and SNO-Cys IMPLICATIONS FOR ACTIVITY (2010) (3)
- Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines (2018) (3)
- Slowed protein turnover in aging Drosophila reflects a shift in cellular priorities. (2021) (3)
- Thesaurus: quantifying phosphoprotein positional isomers (2018) (3)
- Accounting for population variation in targeted proteomics. (2014) (3)
- TurnoveR: A Skyline External Tool for Analysis of Protein Turnover in Metabolic Labeling Studies. (2022) (2)
- Elamipretide effects on the skeletal muscle phosphoproteome in aged female mice (2022) (2)
- Prebiotic Membranes and Micelles Do Not Inhibit Peptide Formation During Dehydration (2021) (2)
- Proteomic Solutions for Analytical Challenges Associated With Alcohol Research (2008) (2)
- Multiplexed Data Independent Acquisition for Comparative Proteomics (2012) (2)
- Label-free differential analysis of murine postsynaptic densities. (2013) (2)
- Computational analysis of quantitative proteomics data using stable isotope labeling. (2007) (2)
- A male steroid controls female sexual behaviour in the malaria mosquito (2022) (2)
- Filtering tandem mass spectra for quality (2012) (2)
- Initial Guidelines for Manuscripts Employing Data-independent Acquisition Mass Spectrometry for Proteomic Analysis. (2019) (2)
- Assessing Protein Sequence Database Suitability Using De Novo Sequencing. (2020) (2)
- Sampling the proteome by emerging single-molecule and mass spectrometry methods (2022) (2)
- CHAPTER 7:MS1 Label-free Quantification Using Ion Intensity Chromatograms in Skyline (Research and Clinical Applications) (2014) (2)
- Proteomics support the threespine stickleback egg coat as a protective oocyte envelope (2020) (2)
- Host plant adaptation drives changes in Diaphorina citri proteome regulation, proteoform expression and transmission of Candidatus Liberibacter asiaticus, the citrus greening pathogen. (2021) (2)
- Lysosomal targetomics of ghr KO mice shows chaperone-mediated autophagy degrades nucleocytosolic acetyl-coA enzymes (2021) (2)
- Identification of Transcription Factor EGL-27::GFP Binding Regions in L1 (2011) (1)
- The Crux toolkit for analysis of bottom-up tandem mass spectrometry proteomics data (2022) (1)
- Multiplexed quantification of insulin and C-peptide by LC-MS/MS without the use of antibodies (2022) (1)
- Quantitative isotope-labeled crosslinker proteomics reveals developmental variation in protein interactions and posttranslational modifications in Diaphorina citri, the citrus greening insect vector (2021) (1)
- Spc110 N-Terminal Domains Act Independently to Mediate Stable γ-Tubulin Small Complex Binding and γ-Tubulin Ring Complex Assembly (2018) (1)
- A peptide-centric quantitative proteomics dataset for the phenotypic assessment of Alzheimer’s disease (2023) (1)
- Comparative proteomics reveals deficiency of NHE-1 (SLC9A1) in RBCs from beta-adducin knockout mice (2010) (1)
- Building Spectral Libraries from Narrow-Window Data-Independent Acquisition Mass Spectrometry Data. (2022) (1)
- The human Ska complex and Ndc80 complex interact to form a load-bearing assembly that strengthens kinetochore-microtubule attachments (2018) (1)
- Organellar Proteomics Reveals Golgi Arginine Dimethylation □ D (2004) (1)
- Dynamic Data Independent Acquisition Mass Spectrometry with Real-Time Retrospective Alignment (2022) (1)
- TALK Skyline : A Bridge Between Discovery and Targeted Proteomics (2011) (1)
- DNA, DINOSAURS, AND METAGENOMICS: A NEW TOOL FOR MASS IDENTIFICATION OF DNA FROM FOSSIL BONE (2012) (1)
- RNA aptamer capture of macromolecular complexes for mass spectrometry analysis (2020) (1)
- Proteomic profiling dataset of chemical perturbations in multiple biological backgrounds (2021) (1)
- Identification of Actin Filament Interactors in Giardia lamblia (2021) (1)
- Substrate Trapping Proteomics Reveals Targets of the (cid:2) TrCP2/FBXW11 Ubiquitin Ligase (2014) (1)
- Proteomic analysis of Golgi membrane proteins (2002) (1)
- Elamipretide Improves ADP Sensitivity in Aged Mitochondria by Increasing Uptake through the Adenine Nucleotide Translocator (ANT) (2023) (1)
- Age-related disruption of the proteome and acetylome in mouse hearts is associated with loss of function and attenuated by elamipretide (SS-31) and nicotinamide mononucleotide (NMN) treatment (2022) (1)
- Profiling Mouse Brown and White Adipocytes to Identify Metabolically Relevant Small ORFs and Functional Microproteins (2022) (1)
- Activity dependent dissociation of the Homer1 interactome (2022) (1)
- Retraction notice to “Comparative proteomics reveals deficiency of NHE-1 (Slc9a1) in RBCs from the beta-adducin knockout mouse model of hemolytic anemia” [Blood Cells Mol. Dis. 47 (2011) 85–94]. (2012) (1)
- Identification of Transcription Factor GEI-1::GFP Binding Regions in L4 (2011) (1)
- Comprehensive Analysis of Murine and Human RBC Ghost Proteomes. (2006) (1)
- Estimating relative abundances of proteins from shotgun proteomics data (2012) (1)
- Comparative proteomics reveals deficiency of NHE-1 (Slc9a1) in RBCs from the beta-adducin knockout mouse model of hemolytic anemia. (2011) (1)
- Identification of Transcription Factor LIN-15B::GFP Binding Regions in L3 (2011) (1)
- A Stu2-mediated intrinsic tension-sensing pathway promotes chromosome biorientation in vivo (2018) (1)
- Proteomic Analysis of RBC Ghosts from the Beta-Adducin and Protein 4.2 Knock-Out Mouse Models of Inherited Hemolytic Anemia. (2007) (0)
- plant interactome revealed by co-immunoprecipitation and 1 mass spectrometry 2 3 4 (2014) (0)
- Abstract 428: Interventions Targeting Mitochondrial Function as Therapies to Reverse Cardiac Aging (2017) (0)
- Erratum Chapter 22 Label-Free Differential Analysis of Murine Postsynaptic Densities (2013) (0)
- The innate immunity protein C1QBP functions as a negative regulator of circulative transmission of Potato leafroll virus by aphids (2020) (0)
- envelope of abalone eggs Rapidly evolving zona pellucida domain proteins are a major component of the vitelline (2006) (0)
- E-GEOD-25798.additional.1.zip (2011) (0)
- Spontaneous Isomerization of Asp387 in Tau is Diagnostic for Alzheimer’s Disease: An Endogenous Indicator of Reduced Autophagic Flux (2021) (0)
- Measurement of proteome-wide protein kinetics (2002) (0)
- TITLE: Elamipretide Improves ADP Sensitivity in Aged Mitochondria by Increasing Uptake through the Adenine Nucleotide Translocator (ANT) RUNNING TITLE: Elamipretide Improves ADP Sensitivity AUTHORS (2023) (0)
- Development of Selected Reaction Monitoring Methods to Systematically Quantify Kinase Abundance and Phosphorylation Stoichiometry in Human Samples. (2017) (0)
- Monomeric single-particle reconstruction of the Yeast gamma-TuSC (2021) (0)
- E-GEOD-25800.processed.1.zip (2011) (0)
- Identification of Transcription Factor CEH-30::GFP Binding Regions in Late Embyros (2011) (0)
- Serum plays an important role in reprogramming the seasonal transcriptional profile of brown bear adipocytes (2022) (0)
- P1) Technology Development in a Multidisciplinary Center (2012) (0)
- Improving the Comprehensiveness of Large-Scale Proteomics Experiments Using Advanced Computational Tools and Accurate Multiple Hypothesis Testing Statistics (2011) (0)
- Crystal Structure of the DDB1-Cul4A-Rbx1-SV5V Complex (2006) (0)
- Differential inactivation mechanism and covalent adduct formation of ALDH1A1 and ALDH1A2 by WIN18,446 (2018) (0)
- Author response: The Ndc80 complex bridges two Dam1 complex rings (2017) (0)
- Quantitative evolutionary proteomics of seminal fluid from primates with different mating systems (2018) (0)
- Role of the Spc105 Complex in Organization and Microtubule‐Binding Activity of the Budding Yeast Kinetochore (2018) (0)
- Identification of Transcription Factor MEP-1::GFP Binding Regions in Embryos (2011) (0)
- Xrcc4-Spc110p(164-207) fusion (2021) (0)
- Wnt-{beta}-Catenin Signaling Bruton's Tyrosine Kinase Revealed as a Negative Regulator of ` (2012) (0)
- Improved Analysis of Cross-Linking Mass Spectrometry Data with Kojak 2.0, Advanced by Integration into the Trans-Proteomic Pipeline. (2023) (0)
- Profiling the cellular signalling state by targeted phoshoproteomics (2022) (0)
- A Targeted Liquid Chromatography-Tandem Mass Spectrometry Method for Simultaneous Quantification of Peptides from the Carboxyl-terminal Region of Type III Procollagen, Biomarkers of Collagen Turnover. (2022) (0)
- Determination of Protein Turnover in Human Infants and Alveolar Type 2 Cells. (2012) (0)
- Stage-specific, morphological and molecular markers of encystation in Giardia lamblia (2021) (0)
- University of Washington Nathan Shock Center: innovation to advance aging research (2021) (0)
- PSS258 - Divergent Effects of Age on Mitochondrial Function in Fast Twitch and Slow Twitch Skeletal Muscle (2013) (0)
- E-GEOD-25798.processed.2.zip (2011) (0)
- Abstract 17128: Subacute Treatment With Rapamycin Reverses Cardiac Aging by Proteome Remodeling and Improved Mitochondrial Energy Metabolism (2013) (0)
- Reversal of age related post-translational modifications improves mitochondrial and skeletal muscle function through redox dependent mechanisms (2018) (0)
- Supplementary material from "Protein interaction networks at the host–microbe interface in Diaphorina citri , the insect vector of the citrus greening pathogen" (2017) (0)
- Tandem Mass Spectrometry-Based Amyloid Typing Using Manual Microdissection and Open-Source Data Processing. (2022) (0)
- Use of dried blood spots and mass spectrometry for biomonitoring organophosphorus exposures (2014) (0)
- Comparative Profiling of Red Blood Cells from the Beta-Adducin Knockout Mouse Model of Hemolytic Anemia Using Label Free Differential Proteomics (2008) (0)
- Development and Characterization of a Novel Plug and Play Liquid Chromatography-Mass Spectrometry (LC-MS) Source That Automates Connections between the Capillary Trap, Column, and Emitter*□S (2013) (0)
- Large Scale Targeted Protein Quantification Using HR/AM Selected Ion Monitoring with MS/MS Confirmation on a Novel Hybrid, Q-OT-qIT Mass Spectrometer (2013) (0)
- Evaluation of different mass spectrometry data acquisition and analysis strategies for amyloidosis typing (2014) (0)
- Does DIA data contain hidden gems? A case study related to Alzheimer’s disease (2022) (0)
- Open conformation of the Yeast wild-type gamma-TuRC (2021) (0)
- Engineered disulfide cross-linked closed conformation of the Yeast gamma-TuRC(SS) (2021) (0)
- 45 - Short Term Treatment with Mitochondrial Protective Peptide Reverses Cardiac Aging in Mice (2014) (0)
- Decision letter: The mitochondrial permeability transition pore activates the mitochondrial unfolded protein response and promotes aging (2020) (0)
- Closed conformation of the Yeast wild-type gamma-TuRC (0)
- A simple mass-action model predicts genome-wide protein timecourses from mRNA trajectories during a dynamic response in two strains of Saccharomyces cerevisiae (2019) (0)
- Determination of the Intra-individual Variability of Protein Expression in Benign/Cancerous Prostate Tissue via LC-MS – Efforts Towards Molecular Classification (2013) (0)
- EP6 Quantitative Proteomics (2007) (0)
- Cryo-EM structure of gamma-TuSC oligomers in a closed conformation (2016) (0)
- phenotypic diversity in budding yeast Integrative phenomics reveals insight into the structure of Material Supplemental (2013) (0)
- P188. Structural insights into NOS regulatory mechanisms: What? where? how? (2006) (0)
- MBNL1 regulates programmed postnatal switching between regenerative and differentiated cardiac states (2023) (0)
- A flexible workflow for building spectral libraries from narrow window data independent acquisition mass spectrometry data (2021) (0)
- Major Signaling Wilms Tumor Suppressor WTX Negatively Regulates WNT / ß-Catenin (2012) (0)
- AC-RGB jca logo.eps (0)
- Supplement to “ Direct maximization of protein identifications from tandem mass spectra ” (2009) (0)
- Skyline Batch: An Intuitive User Interface for Batch Processing with Skyline (2021) (0)
- Running title : Arabidopsis 24 h interaction proteomics (2017) (0)
- Abstract LB-242: Proteomic Data Commons: A resource for proteogenomic analysis (2020) (0)
- deletion collection Saccharomyces cerevisiae High-throughput profiling of amino acids in strains of the Material Supplemental (2010) (0)
- Proteomics of resilience to Alzheimer’s disease identifies brain regional soluble Aβ levels, actin filament processes, and response to injury (2022) (0)
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What Schools Are Affiliated With Michael J. Maccoss?
Michael J. Maccoss is affiliated with the following schools:
