Michael Lynch
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Computer Science
Michael Lynch's Degrees
- PhD Computer Science Stanford University
- Masters Computer Science University of California, Berkeley
- Bachelors Computer Science University of California, Berkeley
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(Suggest an Edit or Addition)Michael Lynch's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- The evolutionary fate and consequences of duplicate genes. (2000) (4199)
- Preservation of duplicate genes by complementary, degenerative mutations. (1999) (3406)
- Genetics and Analysis of Quantitative Traits (1996) (2724)
- Analysis of population genetic structure with RAPD markers (1994) (2129)
- The probability of duplicate gene preservation by subfunctionalization. (2000) (1507)
- The Origins of Genome Complexity (2003) (1474)
- The Ecoresponsive Genome of Daphnia pulex (2011) (1152)
- Estimation of pairwise relatedness with molecular markers. (1999) (1086)
- The Rate and Molecular Spectrum of Spontaneous Mutations in Arabidopsis thaliana (2010) (953)
- Mutation Accumulation and the Extinction of Small Populations (1995) (888)
- Evolution of the mutation rate. (2010) (861)
- THE GENETIC INTERPRETATION OF INBREEDING DEPRESSION AND OUTBREEDING DEPRESSION (1991) (717)
- The similarity index and DNA fingerprinting. (1990) (697)
- The frailty of adaptive hypotheses for the origins of organismal complexity (2007) (696)
- Rate, molecular spectrum, and consequences of human mutation (2010) (681)
- A genome-wide view of the spectrum of spontaneous mutations in yeast (2008) (676)
- Destabilizing Hybridization, General-Purpose Genotypes and Geographic Parthenogenesis (1984) (613)
- EVOLUTION AND EXTINCTION IN A CHANGING ENVIRONMENT: A QUANTITATIVE‐GENETIC ANALYSIS (1995) (567)
- The analysis of population survey data on DNA sequence variation. (1990) (552)
- The mutational meltdown in asexual populations. (1993) (536)
- Genetic drift, selection and the evolution of the mutation rate (2016) (526)
- The probability of preservation of a newly arisen gene duplicate. (2001) (491)
- MUTATION LOAD AND THE SURVIVAL OF SMALL POPULATIONS (1990) (473)
- Mutation Pressure and the Evolution of Organelle Genomic Architecture (2006) (472)
- Estimation of relatedness by DNA fingerprinting. (1988) (434)
- PERSPECTIVE: SPONTANEOUS DELETERIOUS MUTATION (1999) (423)
- The Origins of Genome Architecture (2007) (423)
- Evolution and Selection of Quantitative Traits (2018) (415)
- METHODS FOR THE ANALYSIS OF COMPARATIVE DATA IN EVOLUTIONARY BIOLOGY (1991) (391)
- MUTATIONAL MELTDOWNS IN SEXUAL POPULATIONS (1995) (369)
- A Quantitative-Genetic Perspective on Conservation Issues (1996) (367)
- The origins of eukaryotic gene structure. (2006) (365)
- High mutation rate and predominance of insertions in the Caenorhabditis elegans nuclear genome (2004) (360)
- Comparing mutational variabilities. (1996) (359)
- The Evolution of Cladoceran Life Histories (1980) (351)
- PHENOTYPIC EVOLUTION BY NEUTRAL MUTATION (1986) (349)
- The bioenergetic costs of a gene (2015) (342)
- Predation, competition, and zooplankton community structure: An experimental study1,2 (1979) (338)
- Environmental Tolerance (1987) (337)
- Captive breeding and the genetic fitness of natural populations (2001) (335)
- The Rate of Morphological Evolution in Mammals from the Standpoint of the Neutral Expectation (1990) (319)
- Drift-barrier hypothesis and mutation-rate evolution (2012) (318)
- The Origin of Interspecific Genomic Incompatibility via Gene Duplication (2000) (317)
- The evolutionary demography of duplicate genes (2004) (316)
- The evolution of genetic networks by non-adaptive processes (2007) (315)
- Predation, enrichment, and phytoplankton community structure1 (1981) (312)
- MULLER'S RATCHET AND MUTATIONAL MELTDOWNS (1993) (311)
- The altered evolutionary trajectories of gene duplicates. (2004) (304)
- Architecture and evolution of a minute plant genome (2013) (299)
- High direct estimate of the mutation rate in the mitochondrial genome of Caenorhabditis elegans. (2000) (297)
- A genome-wide view of Caenorhabditis elegans base-substitution mutation processes (2009) (270)
- Direct Estimation of the Mitochondrial DNA Mutation Rate in Drosophila melanogaster (2008) (269)
- The transcriptional consequences of mutation and natural selection in Caenorhabditis elegans (2005) (262)
- The Phylogenetic Mixed Model (2004) (256)
- Intron evolution as a population-genetic process (2002) (253)
- THE QUANTITATIVE AND MOLECULAR GENETIC ARCHITECTURE OF A SUBDIVIDED SPECIES (1999) (239)
- Analysis of population genetic structure by DNA fingerprinting. (1991) (233)
- The critical effective size for a genetically secure population (1998) (232)
- The rate of polygenic mutation. (1988) (224)
- Streamlining and simplification of microbial genome architecture. (2006) (217)
- Estimate of the genomic mutation rate deleterious to overall fitness in E. coll (1996) (217)
- Mutation accumulation in transfer RNAs: molecular evidence for Muller's ratchet in mitochondrial genomes. (1996) (204)
- Transitions to Asexuality Result in Excess Amino Acid Substitutions (2006) (198)
- The Life History Consequences of Resource Depression in Daphnia Pulex (1989) (197)
- Measurement of the carbon balance in Daphnia (1986) (196)
- Phenotypic Evolution and Parthenogenesis (1983) (193)
- THE FITNESS EFFECTS OF SPONTANEOUS MUTATIONS IN CAENORHABDITIS ELEGANS (2000) (193)
- Rates and Genomic Consequences of Spontaneous Mutational Events in Drosophila melanogaster (2013) (193)
- ECOLOGICAL GENETICS OF DAPHNIA PULEX (1983) (192)
- Metapopulation extinction caused by mutation accumulation (2001) (178)
- Organellar genes: why do they end up in the nucleus? (2000) (169)
- The evolution of spliceosomal introns. (2002) (168)
- Intron size, abundance, and distribution within untranslated regions of genes. (2006) (166)
- The structure and early evolution of recently arisen gene duplicates in the Caenorhabditis elegans genome. (2003) (163)
- Complex Interactions between Natural Coexploiters‐‐Daphnia and Ceriodaphnia (1978) (162)
- Mutation accumulation in nuclear, organelle, and prokaryotic transfer RNA genes. (1997) (161)
- Design and analysis of experiments on random drift and inbreeding depression. (1988) (156)
- The rate of spontaneous mutation for life-history traits in Caenorhabditis elegans. (1999) (152)
- SPONTANEOUS MUTATIONS FOR LIFE‐HISTORY CHARACTERS IN AN OBLIGATE PARTHENOGEN (1985) (151)
- Deleterious mutation accumulation in organelle genomes (2004) (148)
- Antibiotic treatment enhances the genome-wide mutation rate of target cells (2016) (147)
- Population-genomic insights into the evolutionary origin and fate of obligately asexual Daphnia pulex (2013) (147)
- MUTATION AND EXTINCTION: THE ROLE OF VARIABLE MUTATIONAL EFFECTS, SYNERGISTIC EPISTASIS, BENEFICIAL MUTATIONS, AND DEGREE OF OUTCROSSING (1997) (145)
- The selective advantage of reaction norms for environmental tolerance (1992) (143)
- The Lower Bound to the Evolution of Mutation Rates (2011) (140)
- TOWARD A REALISTIC MODEL OF MUTATIONS AFFECTING FITNESS (2003) (138)
- Resource availability, maternal effects, and longevity (1983) (137)
- Comparative evolutionary genetics of spontaneous mutations affecting fitness in rhabditid nematodes. (2005) (137)
- Extensive, Recent Intron Gains in Daphnia Populations (2009) (133)
- Ameiotic recombination in asexual lineages of Daphnia (2006) (133)
- Gene Duplication and Evolution (2002) (132)
- A method for calibrating molecular clocks and its application to animal mitochondrial DNA. (1993) (128)
- The Spontaneous Mutation Rate in the Fission Yeast Schizosaccharomyces pombe (2015) (124)
- High Spontaneous Rate of Gene Duplication in Caenorhabditis elegans (2011) (123)
- Estimation of nucleotide diversity, disequilibrium coefficients, and mutation rates from high-coverage genome-sequencing projects. (2008) (119)
- The chemoreceptor genes of the waterflea Daphnia pulex: many Grs but no Ors (2009) (118)
- Spontaneous deleterious mutation in Arabidopsis thaliana. (1999) (117)
- THE LIMITS TO LIFE HISTORY EVOLUTION IN DAPHNIA (1984) (116)
- Nonadaptive origins of interactome complexity (2011) (116)
- The Origin of Subfunctions and Modular Gene Regulation (2005) (116)
- Asymmetric Context-Dependent Mutation Patterns Revealed through Mutation-Accumulation Experiments. (2015) (115)
- Extraordinary genome stability in the ciliate Paramecium tetraurelia (2012) (111)
- Evolutionary determinants of genome-wide nucleotide composition (2017) (111)
- Differential retention and divergent resolution of duplicate genes following whole-genome duplication (2014) (109)
- The repatterning of eukaryotic genomes by random genetic drift. (2011) (109)
- Fitness and Optimal Body Size in Zooplankton Population (1977) (108)
- EVOLUTIONARY HISTORY OF CONTAGIOUS ASEXUALITY IN DAPHNIA PULEX (2005) (108)
- Adaptive and demographic responses of plankton populations to environmental change (1991) (107)
- Estimation of Allele Frequencies From High-Coverage Genome-Sequencing Projects (2009) (106)
- Maintenance and Loss of Duplicated Genes by Dosage Subfunctionalization. (2015) (105)
- Mutation Accumulation in Populations of Varying Size: The Distribution of Mutational Effects for Fitness Correlates in Caenorhabditis elegans (2004) (105)
- The Cellular, Developmental and Population-Genetic Determinants of Mutation-Rate Evolution (2008) (102)
- The consequences of fluctuating selection for isozyme polymorphisms in Daphnia. (1987) (101)
- Evolutionary cell biology: Two origins, one objective (2014) (101)
- The importance of the Neutral Theory in 1968 and 50 years on: A response to Kern and Hahn 2018 (2018) (98)
- An evolutionary analysis of the helix-hairpin-helix superfamily of DNA repair glycosylases. (2003) (97)
- Genetic Slippage in Response to Sex (1994) (97)
- THE COVARIANCE STRUCTURE OF LIFE‐HISTORY CHARACTERS IN DAPHNIA PULEX (1991) (97)
- Large-scale detection of in vivo transcription errors (2013) (96)
- Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly (2018) (95)
- On the formation of novel genes by duplication in the Caenorhabditis elegans genome. (2006) (93)
- High mutational rates of large-scale duplication and deletion in Daphnia pulex (2016) (93)
- Linking molecular insight and ecological research (2002) (92)
- MUTATION, SELECTION, AND THE MAINTENANCE OF LIFE‐HISTORY VARIATION IN A NATURAL POPULATION (1998) (92)
- Population-Genetic Inference from Pooled-Sequencing Data (2014) (91)
- The landscape of transcription errors in eukaryotic cells (2017) (90)
- mlRho – a program for estimating the population mutation and recombination rates from shotgun‐sequenced diploid genomes (2010) (85)
- A microsatellite-based genetic linkage map of the waterflea, Daphnia pulex: On the prospect of crustacean genomics. (2006) (85)
- Evolution of mutation rates: phylogenomic analysis of the photolyase/cryptochrome family. (2009) (85)
- Hierarchical analysis of population genetic variation in mitochondrial and nuclear genes of Daphnia pulex. (1990) (85)
- Ribosomal DNA Variation in Daphnia pulex (1991) (84)
- THE GENETIC STRUCTURE OF A CYCLICAL PARTHENOGEN (1984) (83)
- A New Reference Genome Assembly for the Microcrustacean Daphnia pulex (2017) (83)
- Genetic diversity in the Paramecium aurelia species complex. (2009) (81)
- Mutation and Human Exceptionalism: Our Future Genetic Load (2016) (81)
- QUANTITATIVE GENETIC VARIATION IN DAPHNIA: TEMPORAL CHANGES IN GENETIC ARCHITECTURE (2000) (81)
- Spontaneous Mutational Correlations for Life-History, Morphological and Behavioral Characters in Caenorhabditis elegans (2005) (81)
- Lack of concordance between genetic diversity estimates at the molecular and quantitative-trait levels (2000) (81)
- De novo identification of LTR retrotransposons in eukaryotic genomes (2007) (80)
- The Rate and Spectrum of Microsatellite Mutation in Caenorhabditis elegans and Daphnia pulex (2008) (80)
- Evolution of the Insertion-Deletion Mutation Rate Across the Tree of Life (2016) (80)
- The rate of establishment of complex adaptations. (2010) (79)
- PATTERNS OF GENETIC ARCHITECTURE FOR LIFE‐HISTORY TRAITS AND MOLECULAR MARKERS IN A SUBDIVIDED SPECIES (2001) (78)
- Messenger RNA surveillance and the evolutionary proliferation of introns. (2003) (78)
- Evolutionary meandering of intermolecular interactions along the drift barrier (2014) (76)
- Evolutionary diversification of the multimeric states of proteins (2013) (75)
- Addressing ecological effects of radiation on populations and ecosystems to improve protection of the environment against radiation: Agreed statements from a Consensus Symposium☆ (2016) (74)
- The evolution of transcription-initiation sites. (2005) (74)
- RAPID FITNESS RECOVERY IN MUTATIONALLY DEGRADED LINES OF CAENORHABDITIS ELEGANS (2003) (72)
- Polynucleobacter necessarius, a model for genome reduction in both free-living and symbiotic bacteria (2013) (71)
- Inbreeding depression and inferred deleterious-mutation parameters in Daphnia. (1997) (71)
- The evolution of multimeric protein assemblages. (2012) (71)
- Spontaneous mutational variation for body size in Caenorhabditis elegans. (2002) (70)
- The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome Genome of Burkholderia cenocepacia (2015) (69)
- Genomics. Gene duplication and evolution. (2002) (68)
- High mutation rates in the mitochondrial genomes of Daphnia pulex. (2012) (68)
- Insights into Three Whole-Genome Duplications Gleaned from the Paramecium caudatum Genome Sequence (2014) (67)
- Selective pressures on clutch size in the gall maker Asteromyia carbonifera (1983) (67)
- Localization of the Genetic Determinants of Meiosis Suppression in Daphnia pulex (2008) (66)
- Estimation of deleterious-mutation parameters in natural populations. (1996) (66)
- A hierarchical molecular phylogeny within the genus Daphnia. (1995) (65)
- Genotype Calling from Population-Genomic Sequencing Data (2017) (64)
- Five hundred and twenty-eight microsatellite markers for ecological genomic investigations using Daphnia (2004) (64)
- Genome-Wide Biases in the Rate and Molecular Spectrum of Spontaneous Mutations in Vibrio cholerae and Vibrio fischeri (2016) (64)
- Abundance, Distribution, and Mutation Rates of Homopolymeric Nucleotide Runs in the Genome of Caenorhabditis elegans (2004) (64)
- THE DISTRIBUTION OF LIFE‐HISTORY VARIATION IN THE DAPHNIA PULEX COMPLEX (1989) (64)
- Scaling expectations for the time to establishment of complex adaptations (2010) (63)
- PHYLOGENETIC HYPOTHESES UNDER THE ASSUMPTION OF NEUTRAL QUANTITATIVE‐GENETIC VARIATION (1989) (63)
- Allozyme and mtDNA variation in populations of the Daphnia pulex complex from both sides of the Rocky Mountains (1997) (60)
- THE AGE AND RELATIONSHIPS OF THE MAJOR ANIMAL PHYLA (1999) (59)
- Estimating genetic correlations in natural populations. (1999) (59)
- Mutation Rate, Spectrum, Topology, and Context-Dependency in the DNA Mismatch Repair-Deficient Pseudomonas fluorescens ATCC948 (2014) (58)
- Deciphering the Evolutionary History of Open and Closed Mitosis (2014) (57)
- Where Do Introns Come From? (2008) (57)
- The Relative Roles of Three DNA Repair Pathways in Preventing Caenorhabditis elegans Mutation Accumulation (2006) (57)
- Background Mutational Features of the Radiation-Resistant Bacterium Deinococcus radiodurans. (2015) (56)
- Membranes, energetics, and evolution across the prokaryote-eukaryote divide (2016) (53)
- Change of genetic architecture in response to sex. (1996) (50)
- Intron presence-absence polymorphisms in Daphnia. (2008) (49)
- Hybridization and the Origin of Contagious Asexuality in Daphnia pulex. (2015) (48)
- Population Genomics of Daphnia pulex (2016) (48)
- Large global effective population sizes in Paramecium. (2006) (47)
- Ubiquitous internal gene duplication and intron creation in eukaryotes (2009) (46)
- Evolutionary Significance of Whole-Genome Duplication (2012) (46)
- Adaptation and extinction in changing environments. (1997) (45)
- The spread of a transposon insertion in Rec8 is associated with obligate asexuality in Daphnia (2012) (45)
- The role of hybridization in the origin and spread of asexuality in Daphnia (2013) (44)
- Statistical Inference on the Mechanisms of Genome Evolution (2011) (42)
- DNA transposon dynamics in populations of Daphnia pulex with and without sex (2010) (42)
- Evolutionary diversification of the Sm family of RNA-associated proteins. (2008) (42)
- The Rate and Spectrum of Spontaneous Mutations in Mycobacterium smegmatis, a Bacterium Naturally Devoid of the Postreplicative Mismatch Repair Pathway (2016) (42)
- Evolution of intrafamilial interactions. (1987) (42)
- Escherichia coli cultures maintain stable subpopulation structure during long-term evolution (2018) (41)
- A Male-Specific Genetic Map of the Microcrustacean Daphnia pulex Based on Single-Sperm Whole-Genome Sequencing (2015) (40)
- Evolutionary layering and the limits to cellular perfection (2012) (40)
- Simple evolutionary pathways to complex proteins (2005) (40)
- DNA transposons and the role of recombination in mutation accumulation in Daphnia pulex (2010) (39)
- Biogeographic patterns and current distribution of molecular-genetic variation among populations of speckled dace, Rhinichthys osculus (Girard). (2004) (39)
- Behavioral Degradation Under Mutation Accumulation in Caenorhabditis elegans (2005) (39)
- THE DIVERGENCE OF NEUTRAL QUANTITATIVE CHARACTERS AMONG PARTIALLY ISOLATED POPULATIONS (1988) (37)
- How Well Does the Edmonson-Paloheimo Model Approximate Instantaneous Birth Rates? (1982) (37)
- Diversity and Divergence of Dinoflagellate Histone Proteins (2015) (37)
- Low Base-Substitution Mutation Rate in the Germline Genome of the Ciliate Tetrahymena thermophila (2015) (37)
- Similar Mutation Rates but Highly Diverse Mutation Spectra in Ascomycete and Basidiomycete Yeasts (2016) (36)
- The Life History Consequences of Resource Depression in Ceriodaphnia Quadrangula and Daphnia Ambigua (1992) (36)
- The Measurement of Selection on Size and Growth (1988) (35)
- Specificity of the DNA Mismatch Repair System (MMR) and Mutagenesis Bias in Bacteria (2018) (34)
- Patterns of Intraspecific DNA Variation in the Daphnia Nuclear Genome (2009) (33)
- Population extinction by mutational load and demographic stochasticity. (1991) (33)
- Genotype-Frequency Estimation from High-Throughput Sequencing Data (2015) (32)
- Physical bioenergetics: Energy fluxes, budgets, and constraints in cells (2021) (32)
- Estimating Seven Coefficients of Pairwise Relatedness Using Population-Genomic Data (2016) (31)
- The rate and molecular spectrum of spontaneous mutations in the GC-rich multi-chromosome genome of Burkholderia cenocepacia (2014) (31)
- Nucleotide Substitutions and the Evolution of Duplicate Genes (2000) (29)
- LTR retroelements in the genome of Daphnia pulex (2010) (29)
- Genome-Wide Linkage-Disequilibrium Profiles from Single Individuals (2014) (28)
- CONSERVED ONTOGENY AND ALLOMETRIC SCALING OF RESOURCE ACQUISITION AND ALLOCATION IN THE DAPHNIIDAE (2005) (28)
- Position of the final intron in full-length transcripts: determined by NMD? (2007) (27)
- Recommendations for improving statistical inference in population genomics (2021) (26)
- Periodic Variation of Mutation Rates in Bacterial Genomes Associated with Replication Timing (2017) (26)
- A Theoretical Framework for Evolutionary Cell Biology. (2020) (25)
- Considering mutational meltdown as a potential SARS-CoV-2 treatment strategy (2020) (25)
- Phylogenomic analysis of the uracil-DNA glycosylase superfamily. (2011) (25)
- Genome-Wide Estimation of Linkage Disequilibrium from Population-Level High-Throughput Sequencing Data (2014) (23)
- The effect of spontaneous mutations on competitive ability (2013) (23)
- Estimation of size‐specific mortality rates in zooplankton populations by periodic sampling1 (1983) (23)
- Population Genomics of Paramecium Species (2017) (22)
- Correlated evolution of life-history with size at maturity in Daphnia pulicaria: patterns within and between populations. (2003) (22)
- THE EFFECT OF VARIABLE FREQUENCY OF SEXUAL REPRODUCTION ON THE GENETIC STRUCTURE OF NATURAL POPULATIONS OF A CYCLICAL PARTHENOGEN (2012) (22)
- The selective value of alleles underlying polygenic traits. (1984) (22)
- Genetic control of male production in Daphnia pulex (2019) (19)
- Genome-Wide Mutation Rate Response to pH Change in the Coral Reef Pathogen Vibrio shilonii AK1 (2017) (19)
- A Genomic Survey of Reb Homologs Suggests Widespread Occurrence of R-Bodies in Proteobacteria (2013) (19)
- Path Analysis of Ontogenetic Data (1988) (18)
- Simple sequence repeat variation in the Daphnia pulex genome (2010) (18)
- Insertion Polymorphisms of Mobile Genetic Elements in Sexual and Asexual Populations of Daphnia pulex (2017) (18)
- Promoter Architecture and Sex-Specific Gene Expression in Daphnia pulex (2016) (18)
- Spontaneous mutations of a model heterotrophic marine bacterium (2017) (17)
- Characterization of Newly Gained Introns in Daphnia Populations (2014) (17)
- Genomic Background and Generation Time Influence Deleterious Mutation Rates in Daphnia (2013) (17)
- Reply to Lane and Martin: Mitochondria do not boost the bioenergetic capacity of eukaryotic cells (2016) (16)
- Catalytic properties of RNA polymerases IV and V: accuracy, nucleotide incorporation and rNTP/dNTP discrimination (2017) (16)
- RAPID FITNESS RECOVERY IN MUTATIONALLY DEGRADED LINES OF (2003) (15)
- Spliced DNA Sequences in the Paramecium Germline: Their Properties and Evolutionary Potential (2013) (15)
- Response to Comment on "The Origins of Genome Complexity" (2004) (15)
- Independent Mammalian Genome Contractions Following the KT Boundary (2009) (15)
- Evolution and Selection of Quantitative Traits I : Foundations (2014) (14)
- Population Genetics of Paramecium Mitochondrial Genomes: Recombination, Mutation Spectrum, and Efficacy of Selection (2019) (14)
- Both Costs and Benefits of Sex Correlate With Relative Frequency of Asexual Reproduction in Cyclically Parthenogenic Daphnia pulicaria Populations (2008) (14)
- Flagellar energy costs across the tree of life (2022) (14)
- Limited Mutation-Rate Variation Within the Paramecium aurelia Species Complex (2018) (14)
- Variable Spontaneous Mutation and Loss of Heterozygosity among Heterozygous Genomes in Yeast. (2020) (14)
- The evolutionary scaling of cellular traits imposed by the drift barrier (2020) (13)
- NMD and the evolution of eukaryotic gene structure (2006) (13)
- The Compact Macronuclear Genome of the Ciliate Halteria grandinella: A Transcriptome-Like Genome with 23,000 Nanochromosomes (2021) (13)
- Stochastic protein multimerization, activity, and fitness. (2018) (13)
- Viral transgenesis of embryonic cell cultures from the freshwater microcrustacean Daphnia. (2006) (13)
- Zooplankton competition and plankton community structure (1977) (12)
- Imposed mutational meltdown as an antiviral strategy (2020) (12)
- A simple model to explain evolutionary trends of eukaryotic gene architecture and expression: how competition between splicing and cleavage/polyadenylation factors may affect gene expression and splice-site recognition in eukaryotes. (2013) (12)
- An Unbiased Genome-Wide View of the Mutation Rate and Spectrum of the Endosymbiotic Bacterium Teredinibacter turnerae (2018) (12)
- Universally high transcript error rates in bacteria (2020) (12)
- Genome-wide surveillance of transcription errors in response to genotoxic stress (2020) (11)
- RANDOM DRIFT, UNIFORM SELECTION, AND THE DEGREE OF POPULATION DIFFERENTIATION (1986) (11)
- The Limits to Estimating Population-Genetic Parameters with Temporal Data (2020) (11)
- Estimation of Relatedness by DNA Fingerprinting 1 (1998) (11)
- The Glyphosate-Based Herbicide Roundup Does Not Elevate Genome-Wide Mutagenesis of Escherichia coli (2017) (10)
- Low Base-Substitution Mutation Rate but High Rate of Slippage Mutations in the Sequence Repeat-Rich Genome of Dictyostelium discoideum (2020) (10)
- Editorial Expression of Concern: Non-adaptive origins of interactome complexity (2014) (10)
- Identification and Characterization of Five Intramembrane Metalloproteases in Anabaena variabilis (2012) (10)
- Enhanced nutrient uptake is sufficient to drive emergent cross-feeding between bacteria in a synthetic community (2019) (10)
- Conservation and divergence of the histone code in nucleomorphs (2016) (10)
- Universal trends of post-duplication evolution revealed by the genomes of 13 Paramecium species sharing an ancestral whole-genome duplication (2019) (10)
- Genetics: Feedforward loop for diversity (2015) (10)
- Gene and pathway level analyses of germline DNA-repair gene variants and prostate cancer susceptibility using the iCOGS-genotyping array (2016) (9)
- The Limits to Knowledge in Quantitative Genetics (2000) (9)
- Inferring the major genomic mode of dominance and overdominance (2004) (9)
- Size specific mortality rates in zooplankton populations: With 3 figures in the text (1981) (9)
- Phylogenetic divergence of cell biological features (2018) (9)
- Mutational divergence of life-history traits in an obligate parthenogen. (1994) (8)
- An Escherichia coli Nitrogen Starvation Response Is Important for Mutualistic Coexistence with Rhodopseudomonas palustris (2018) (8)
- Inference of Historical Population-Size Changes with Allele-Frequency Data (2019) (8)
- Estimation of the Genome-Wide Mutation Rate and Spectrum in the Archaeal Species Haloferax volcanii (2020) (8)
- Chromosomal rearrangements preserve adaptive divergence in ecological speciation (2021) (7)
- Revisiting the notion of deleterious sweeps (2020) (7)
- Behavioral degradation under mutation accumulation (2005) (6)
- Reply to Massey: Drift does influence mutation-rate evolution (2013) (6)
- The insect-killing bacterium Photorhabdus luminescens has the lowest mutation rate among bacteria (2020) (6)
- Defining the Energetic Costs of Cellular Structures (2019) (6)
- Early stages of functional diversification in the Rab GTPase gene family revealed by genomic and localization studies in Paramecium species (2017) (6)
- The universal genetic code, protein coding genes and genomes of all species were optimized for frameshift tolerance (2018) (6)
- The molecular natural history of the human genome (2001) (6)
- Speciation in the Cladocera: With 2 figures and 1 table in the text (1985) (6)
- Genetic Simulation Library (1999) (5)
- Genome-Wide Allele-Specific Expression in Obligately Asexual Daphnia pulex and the Implications for the Genetic Basis of Asexuality (2021) (5)
- Metapopulation extinction caused by mutation (2001) (5)
- Response to Comment on "Transitions to Asexuality Result in Excess Amino Acid Substitutions" (2006) (4)
- Evolutionary Dynamics of Asexual Hypermutators Adapting to a Novel Environment (2021) (4)
- Evolution of the breadth of biochemical adaptation (1987) (4)
- Rapid evolution of mutation rate and spectrum in response to environmental and population-genetic challenges (2022) (4)
- Assays of human postprenylation processing enzymes. (2001) (4)
- The Recombinational Landscape in Daphnia pulex (2020) (4)
- Rates of Mutations and Transcript Errors in the Foodborne Pathogen Salmonella enterica subsp. enterica (2022) (4)
- Mutation, Eugenics, and the Boundaries of Science (2016) (4)
- Response to Martin and colleagues: mitochondria do not boost the bioenergetic capacity of eukaryotic cells (2018) (4)
- The Infinitesimal Model and Its Extensions (2018) (4)
- A Population-Genetic Lens into the Process of Gene Loss Following Whole-Genome Duplication (2022) (3)
- Evolutionary scaling of maximum growth rate with organism size (2022) (3)
- Population genetics of Paramecium mitochondrial genomes: recombination, mutational spectrum, and efficacy of selection (2018) (3)
- Response to Martin and colleagues: mitochondria do not boost the bioenergetic capacity of eukaryotic cells (2018) (3)
- Evolutionary dynamics of a conserved sequence motif in the ribosomal genes of the ciliate Paramecium (2010) (3)
- Mutagenesis and Resistance Development of Bacteria Challenged by Silver Nanoparticles (2022) (3)
- Draft Genome Sequence of Caedibacter varicaedens, a Kappa Killer Endosymbiont Bacterium of the Ciliate Paramecium biaurelia (2015) (3)
- Evolution of a minimal cell (2021) (3)
- Genomic analyses of population structure reveal metabolism as a primary driver of local adaptation in Daphnia pulex (2019) (3)
- The fidelity of transcription in human cells (2022) (2)
- Evolutionary bioenergetics of ciliates (2022) (2)
- Long-term Response: 2. Finite Population Size and Mutation (2018) (2)
- The Linkage-Disequilibrium and Recombinational Landscape in Daphnia pulex (2022) (2)
- Short-term Changes in the Variance: 2. Changes in the Environmental Variance (2018) (2)
- 6. Evolutionary Genetics of Daphnia (with Ken Spitze) (2017) (2)
- Evolutionary Response to Resource Deprivation: Parallelism and Nonmonotonicity (2019) (2)
- Genome-Wide Analysis of Cadmium-Induced, Germline Mutations in a Long-Term Daphnia pulex Mutation-Accumulation Experiment (2021) (2)
- Complex Ecotype Dynamics Evolve in Response to Fluctuating Resources (2022) (2)
- White Paper: An Integrated Perspective on the Causes of Hypometric Metabolic Scaling in Animals (2022) (2)
- The Glyphosate-Based Herbicide Roundup® Does Not Elevate Genome-Wide Mutagenesis of Escherichia coli. (2017) (2)
- Correction: Membranes, Energetics, and Evolution Across the Prokaryote-Eukaryote Divide (2018) (2)
- Resource allocation to cell envelopes and the scaling of bacterial growth rate (2022) (2)
- Antagonism in Evolutionary Opportunities Results in Non-Monotonic Evolution Across an Environmental Gradient (2019) (2)
- Evolution of protein interfaces in multimers and fibrils (2019) (1)
- Author response: Phylogenetic divergence of cell biological features (2018) (1)
- A Maximum-Likelihood Approach to Estimating the Insertion Frequencies of Transposable Elements from Population Sequencing Data (2018) (1)
- Complexity" Response to Comment on "The Origins of Genome (2010) (1)
- Maintenance of Quantitative Genetic Variation (2018) (1)
- Short-term Changes in the Variance: 1. Changes in the Additive Variance (2018) (1)
- Quantitative Genetics@@@Genetics and Analysis of Quantitative Traits (1999) (1)
- Erratum: Ameiotic recombination in asexual lineages of Daphnia (Proceedings of the National Academy of Sciences of the United States of America (December 5, 2006) 103, 49 (18638-18643) DOI: 10.1073/pnas.0606435103) (2007) (1)
- Intelligent design or intellectual laziness? (2005) (1)
- Using Molecular Data to Detect Selection: Signatures from Multiple Historical Events (2018) (1)
- Analysis of Short-term Selection Experiments: 2. Mixed-model and Bayesian Approaches (2018) (1)
- Measuring Multivariate Selection (2018) (1)
- Selection Under Inbreeding (2018) (1)
- Theorems of Natural Selection: Results of Price, Fisher, and Robertson (2018) (1)
- Short-term Changes in the Mean: 2. Truncation and Threshold Selection (2018) (1)
- Interaction of Selection, Mutation, and Drift (2018) (1)
- Unexpected Discovery of Hypermutator Phenotype Sounds the Alarm for Quality Control Strains (2021) (1)
- Genetic Diversity, Heteroplasmy, and Recombination in Mitochondrial Genomes of Daphnia pulex, Daphnia pulicaria, and Daphnia obtusa (2022) (1)
- Evolutionary Genomics of a Subdivided Species (2022) (1)
- The Genome-wide Signature of Short-term Temporal Selection (2023) (1)
- The Nonadaptive Forces of Evolution (2018) (0)
- SimilarMutationRatesbutHighlyDiverseMutationSpectra in Ascomycete and Basidiomycete Yeasts (2017) (0)
- Robust, Scalable Standardized Two-Stage Fermentations using Dynamic Metabolic Control (2015) (0)
- Selection Response in Natural Populations (2018) (0)
- Promoter architecture and sex-specific gene expression in the microcrustacean Daphnia pulex revealed by large-scale profiling of 5'-mRNA ends (2016) (0)
- Mutations induced by pollutants may promote pathogen evolution for example by accelerating (2017) (0)
- The Bifi-RuMP Pathway: a Synthetic High Yield Methanol Assimilation Pathway (2014) (0)
- Identification and Characterization of Five Intramembrane Metalloproteases in Anabaena (2012) (0)
- Similar mutation rates but different mutation spectra in moderate and extremely halophilic archaea (2022) (0)
- Molecular Coevolutionary Drive (2023) (0)
- Using Molecular Data to Detect Selection: Signatures from Recent Single Events (2018) (0)
- One-Step PCR Amplicon Library Construction (OSPALC, version 1) (2022) (0)
- Evolutionary determinants of genome-wide nucleotide composition (2018) (0)
- ECOLOGY AND EVOLUTIONARY BIOLOGY SYMPOSIUM July 12th/13th 2014, Istanbul Turkey ECOLOGY ORAL ABSTRACTS Ecological Co-Optation in Birds (2014) (0)
- Statistical Mechanics of Protein Multimerization and Aggregation (2017) (0)
- Hitchhiking and Selective Sweeps (2018) (0)
- Stochastic Protein Multimerization, Cooperativity and Fitness (2017) (0)
- Author response: Universally high transcript error rates in bacteria (2020) (0)
- Neutral Evolution in One- and Two-Locus Systems (2018) (0)
- Conservation and divergence of the histone code in nucleomorphs (2016) (0)
- Changes in Quantitative Traits Over Time (2018) (0)
- One-Step PCR Amplicon Library (2022) (0)
- The Population Genetics of Selection (2018) (0)
- Low base‐substitution mutation rate and predominance of insertion‐deletion events in the acidophilic bacterium Acidobacterium capsulatum (2021) (0)
- Measuring Oligonucleotide Hydrolysis in Cellular Lysates via Viscosity Measurements. (2022) (0)
- Individual Fitness and the Measurement of Univariate Selection (2018) (0)
- Analysis of Short-term Selection Experiments: 1. Least-squares Approaches (2018) (0)
- Evolutionary Insights from a Large-scale Survey of Population-genomic Variation (2023) (0)
- Silver nanoparticles elevate mutagenesis of eukaryotic genomes (2023) (0)
- Family-Based Selection (2018) (0)
- PATTERNS OF GENETIC ARCHITECTURE FOR LIFE-HISTORY TRAITS AND MOLECULAR MARKERS IN A SUBDIVIDED SPECIES (2001) (0)
- A Narrow Range of Transcript-error Rates Across the Tree of Life (2023) (0)
- Long-term Response: 3. Adaptive Walks (2018) (0)
- 2 INBREEDING , FINITE POPULATION SIZE , AND GENE FREQUENCY CHANGE (0)
- Joseph Shapiro, an Icon of Applied Limnology (2019) (0)
- The Rapid, Mass Invasion of New Zealand by North American Daphnia pulex/pulicaria (2020) (0)
- Changes in Genetic Variation Induced by Drift (2018) (0)
- Short-term Changes in the Mean: 3. Permanent Versus Transient Response (2018) (0)
- Characterizing the phylogenetic distribution of cryptic species in the Rhodophyta using novel gene sequence analysis and molecular morphometrics (2011) (0)
- Feedforward loop for diversity (2016) (0)
- Evolution of sex determination in crustaceans (2023) (0)
- The Divergence of Mean Phenotypes Under Persistent Directional Selection (2022) (0)
- OP-GBEV160289 3815..3821 (2017) (0)
- The Genetic Effective Size of a Population (2018) (0)
- Clonal polymorphism and high heterozygosity in the celibate genome of the Amazon molly (2018) (0)
- Measurement of the carbon balance in Daphrtz 2 (2000) (0)
- Promoter architecture and sex-specific gene expression in the microcrustacean Daphnia pulex revealed by profiling of 5’-mRNA ends (2016) (0)
- Long-term Response: 1. Deterministic Aspects (2018) (0)
- The Rab7 subfamily across Paramecium aurelia species; evidence of high conservation in sequence and function (2018) (0)
- The Neutral Divergence of Quantitative Traits (2018) (0)
- Short-term Changes in the Mean: 1. The Breeder’s Equation (2018) (0)
- Associative Effects: Competition, Social Interactions, Group and Kin Selection (2018) (0)
- Development of robust, flexible and scalable multi-product platform microbes utilizing dynamic metabolic engineering (2016) (0)
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What Schools Are Affiliated With Michael Lynch?
Michael Lynch is affiliated with the following schools:
