Michael P. Cummings
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Michael P. Cummingsbiology Degrees
Biology
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#9671
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Systematics
#27
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#31
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Evolutionary Biology
#155
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#175
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Biology
Why Is Michael P. Cummings Influential?
(Suggest an Edit or Addition)Michael P. Cummings's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- PAUP* [Phylogenetic Analysis Using Parsimony (and Other Methods)] (2004) (19575)
- PHYLIP (Phylogeny Inference Package) (2004) (4388)
- MEGA (Molecular Evolutionary Genetics Analysis) (2004) (2306)
- BEAGLE: An Application Programming Interface and High-Performance Computing Library for Statistical Phylogenetics (2011) (522)
- Sampling properties of DNA sequence data in phylogenetic analysis. (1995) (391)
- Independent emergence of artemisinin resistance mutations among Plasmodium falciparum in Southeast Asia. (2015) (381)
- copia-like retrotransposons are ubiquitous among plants. (1992) (346)
- Comparing bootstrap and posterior probability values in the four-taxon case. (2003) (289)
- A Large-Scale, Higher-Level, Molecular Phylogenetic Study of the Insect Order Lepidoptera (Moths and Butterflies) (2013) (268)
- Genetic loci associated with delayed clearance of Plasmodium falciparum following artemisinin treatment in Southeast Asia (2012) (264)
- A Genealogical Approach to Quantifying Lineage Divergence (2008) (236)
- Toward reconstructing the evolution of advanced moths and butterflies (Lepidoptera: Ditrysia): an initial molecular study (2009) (222)
- Resolving arthropod phylogeny: exploring phylogenetic signal within 41 kb of protein-coding nuclear gene sequence. (2008) (203)
- A Gateway for Phylogenetic Analysis Powered by Grid Computing Featuring GARLI 2.0 (2014) (201)
- Extreme Polymorphism in a Vaccine Antigen and Risk of Clinical Malaria: Implications for Vaccine Development (2009) (167)
- A superfamily of Arabidopsis thaliana retrotransposons. (1991) (160)
- Phylogeny and Evolution of Lepidoptera. (2017) (153)
- The evolution of plant nuclear genes. (1997) (148)
- Phylogenetic Relationships of Acanthocephala Based on Analysis of 18S Ribosomal RNA Gene Sequences (2000) (118)
- Biased data reduce efficiency and effectiveness of conservation reserve networks. (2007) (113)
- BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics (2019) (111)
- A comparative evaluation of sequence classification programs (2012) (110)
- GARLI (Genetic Algorithm for Rapid Likelihood Inference) (2014) (106)
- A molecular phylogeny for the pyraloid moths (Lepidoptera: Pyraloidea) and its implications for higher‐level classification (2012) (94)
- The structure, distribution and evolution of the Ta1 retrotransposable element family of Arabidopsis thaliana. (1990) (92)
- Can Deliberately Incomplete Gene Sample Augmentation Improve a Phylogeny Estimate for the Advanced Moths and Butterflies (Hexapoda: Lepidoptera)? (2011) (92)
- Effectiveness of Conservation Targets in Capturing Genetic Diversity (2003) (91)
- Association of a Novel Mutation in the Plasmodium falciparum Chloroquine Resistance Transporter With Decreased Piperaquine Sensitivity (2017) (90)
- Can RNA-Seq Resolve the Rapid Radiation of Advanced Moths and Butterflies (Hexapoda: Lepidoptera: Apoditrysia)? An Exploratory Study (2013) (89)
- BEAST (Bayesian Evolutionary Analysis by Sampling Trees) (2014) (88)
- Slipped-strand mispairing in a plastid gene: rpoC2 in grasses (Poaceae). (1994) (87)
- PAML (Phylogenetic Analysis by Maximum Likelihood) (2004) (87)
- Phylogenetic relationships of Phytophthora species based on ribosomal ITS I DNA sequence analysis with emphasis on Waterhouse groups V and VI (2000) (86)
- Evolution of the Avocados as Revealed by DNA Restriction Fragment Variation (1990) (82)
- Data sharing in ecology and evolution. (2005) (81)
- Increased gene sampling yields robust support for higher‐level clades within Bombycoidea (Lepidoptera) (2011) (78)
- Nucleotide sequence diversity at the alcohol dehydrogenase 1 locus in wild barley (Hordeum vulgare ssp. spontaneum): an evaluation of the background selection hypothesis. (1998) (78)
- A molecular phylogeny for the oldest (nonditrysian) lineages of extant Lepidoptera, with implications for classification, comparative morphology and life‐history evolution (2015) (74)
- A Molecular Phylogeny for the Leaf-Roller Moths (Lepidoptera: Tortricidae) and Its Implications for Classification and Life History Evolution (2012) (72)
- Phylogenetic analysis based on 18S ribosomal RNA gene sequences supports the existence of class polyacanthocephala (acanthocephala). (2002) (71)
- A case for evolutionary genomics and the comprehensive examination of sequence biodiversity. (2000) (71)
- Phylogenetic relationships of platyhelminthes based on 18S ribosomal gene sequences. (1998) (71)
- Phylogenetic analysis reveals five independent transfers of the chloroplast gene rbcL to the mitochondrial genome in angiosperms (2003) (67)
- Evolutionary biology of parasitic platyhelminths: The role of molecular phylogenetics. (1996) (67)
- Relating Amino Acid Sequence to Phenotype: Analysis of Peptide‐Binding Data (2000) (67)
- Transmission patterns of eukaryotic transposable elements: arguments for and against horizontal transfer. (1994) (63)
- Increased gene sampling strengthens support for higher-level groups within leaf-mining moths and relatives (Lepidoptera: Gracillariidae) (2011) (60)
- A Molecular Phylogeny for Yponomeutoidea (Insecta, Lepidoptera, Ditrysia) and Its Implications for Classification, Biogeography and the Evolution of Host Plant Use (2013) (59)
- Prey preference follows phylogeny: evolutionary dietary patterns within the marine gastropod group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia) (2017) (55)
- Expanding the Reach of Grid Computing: Combining Globus- and BOINC-Based Systems (2007) (55)
- Simple statistical models predict C-to-U edited sites in plant mitochondrial RNA (2004) (52)
- Magic bullets and golden rules: data sampling in molecular phylogenetics. (2005) (50)
- Bio-STEER: A Semantic Web workflow tool for Grid computing in the life sciences (2007) (47)
- Divergent gene copies in the asexual class Bdelloidea (Rotifera) separated before the bdelloid radiation or within bdelloid families. (2004) (47)
- Evolutionary Framework for Lepidoptera Model Systems (2009) (46)
- Further progress on the phylogeny of Noctuoidea (Insecta: Lepidoptera) using an expanded gene sample (2017) (46)
- Grid Services Base Library: A high-level, procedural application programming interface for writing Globus-based Grid services (2007) (44)
- A molecular phylogeny and revised classification for the oldest ditrysian moth lineages (Lepidoptera: Tineoidea), with implications for ancestral feeding habits of the mega‐diverse Ditrysia (2015) (44)
- Necessity is the mother of invention: a simple grid computing system using commodity tools (2003) (43)
- Broader incorporation of bioinformatics in education: opportunities and challenges (2010) (43)
- Relationships within Cladobranchia (Gastropoda: Nudibranchia) based on RNA-Seq data: an initial investigation (2015) (41)
- Phylogeny and feeding trait evolution of the mega‐diverse Gelechioidea (Lepidoptera: Obtectomera): new insight from 19 nuclear genes (2016) (41)
- Computing the Tree of Life: Leveraging the Power of Desktop and Service Grids (2011) (39)
- Satellite DNA repeat sequence variation is low in three species of burying beetles in the genus Nicrophorus (Coleoptera: Silphidae). (1997) (37)
- Few amino acid positions in rpoB are associated with most of the rifampin resistance in Mycobacterium tuberculosis (2004) (36)
- Phylotranscriptomics resolves ancient divergences in the Lepidoptera (2017) (35)
- Genetic consequences of ecological reserve design guidelines: An empirical investigation (2003) (34)
- DNA SEQUENCE VARIATION IN THE RIBOSOMAL INTERNAL TRANSCRIBED SPACER REGION OF FRESHWATER CLADOPHORA SPECIES (CHLOROPHYTA) 1 (1996) (33)
- Pigment composition of putatively achlorophyllous angiosperms (1998) (31)
- Comparative morphology and evolution of the cnidosac in Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia) (2018) (28)
- Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads (2017) (25)
- Section-level relationships of North American Agalinis (Orobanchaceae) based on DNA sequence analysis of three chloroplast gene regions (2004) (19)
- Plasmodium falciparum field isolates from areas of repeated emergence of drug resistant malaria show no evidence of hypermutator phenotype. (2015) (18)
- A Molecular Footprint of Limb Loss: Sequence Variation of the Autopodial Identity Gene Hoxa-13 (2008) (18)
- Genes and other samples of DNA sequence data for phylogenetic inference. (1999) (15)
- Abstracting Workflows: Unifying Bioinformatics Task Conceptualization and Specification Through Semantic Web Services (2004) (14)
- Subdividing Long-Running, Variable-Length Analyses Into Short, Fixed-Length BOINC Workunits (2016) (13)
- A critical assessment of gene catalogs for metagenomic analysis (2021) (12)
- Heterogeneous Hardware Support in BEAGLE, a High-Performance Computing Library for Statistical Phylogenetics (2017) (9)
- Configuring Concurrent Computation of Phylogenetic Partial Likelihoods: Accelerating Analyses Using the BEAGLE Library (2017) (9)
- Phylogeny of Cladobranchia (Gastropoda: Nudibranchia): a total evidence analysis using DNA sequence data from public databases (2015) (8)
- Validating the systematic position of Plationus Segers, Murugan & Dumont, 1993 (Rotifera: Brachionidae) using sequences of the large subunit of the nuclear ribosomal DNA and of cytochrome C oxidase (2010) (7)
- The genealogical sorting index : software and web site for quantifying the exclusivity of lineages (2008) (7)
- BAMBE (Bayesian Analysis in Molecular Biology and Evolution) (2014) (3)
- Rerooting Trees Increases Opportunities for Concurrent Computation and Results in Markedly Improved Performance for Phylogenetic Inference (2018) (3)
- Mesquite (2021) (2)
- A comparative evaluation of sequence classification programs (2012) (1)
- HyPhy (Hypothesis Testing Using Phylogenies) (2014) (1)
- BEAUti (Bayesian Evolutionary Analysis Utility) (2014) (1)
- Evaluation of bactericides and plant defense activators for control of black rot of cabbage 2003 (2003) (1)
- Machine learning-driven multifunctional peptide engineering for sustained ocular drug delivery (2023) (0)
- Genealogical Sorting Index (gsi) (2014) (0)
- Takala Implications for Vaccine Development Extreme Polymorphism in a Vaccine Antigen and Risk of Clinical Malaria (2009) (0)
- Using Machine Learning to Understand the Relationships Between Audiometric Data, Speech Perception, Temporal Processing, And Cognition (2023) (0)
- Prey preference follows phylogeny: evolutionary dietary patterns within the marine gastropod group Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia) (2017) (0)
- IMa2 (Isolation with Migration a2) (2014) (0)
- Transmission patterns of eukaryotic tra able elements : arg for and against horizontal transfer (2003) (0)
- Subdividing Long-Running, Variable-Length Analyses Into Short, Fixed-Length BOINC Workunits (2015) (0)
- Applying Permuation Tests to Tree-Based Statistical Models : Extending the R Package rpart CS-TR-4581 , UMIACS-TR-2004-24 (2004) (0)
- Deliberately Unequal Gene Sampling, A Design of Molecular Studies Tested in Lepidoptera (2010) (0)
- Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads (2017) (0)
- Comparative morphology and evolution of the cnidosac in Cladobranchia (Gastropoda: Heterobranchia: Nudibranchia) (2018) (0)
- Lamarc (Fluctuate, Migrate, Recombine) (2004) (0)
- Phylogenomics suggests that larvae are ancestral in polyclads, but not homologous to the trochophore (2022) (0)
- A phylogenomic approach to resolving interrelationships of polyclad flatworms, with implications for life-history evolution (2022) (0)
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What Schools Are Affiliated With Michael P. Cummings?
Michael P. Cummings is affiliated with the following schools:
