Michael P. Washburn
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Michael P. Washburncomputer-science Degrees
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Machine Learning
#1976
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Computer Science
Michael P. Washburn's Degrees
- PhD Computer Science Stanford University
- Masters Computer Science University of California, Berkeley
- Bachelors Computer Science University of California, Berkeley
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(Suggest an Edit or Addition)Michael P. Washburn's Published Works
Number of citations in a given year to any of this author's works
Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author
Published Works
- Large-scale analysis of the yeast proteome by multidimensional protein identification technology (2001) (4461)
- An automated multidimensional protein identification technology for shotgun proteomics. (2001) (1671)
- Histone H3 Methylation by Set2 Directs Deacetylation of Coding Regions by Rpd3S to Suppress Spurious Intragenic Transcription (2005) (1316)
- A proteomic view of the Plasmodium falciparum life cycle (2002) (1283)
- The CRAPome: a Contaminant Repository for Affinity Purification Mass Spectrometry Data (2013) (1234)
- Vpx relieves inhibition of HIV-1 infection of macrophages mediated by the SAMHD1 protein (2011) (1108)
- Statistical analysis of membrane proteome expression changes in Saccharomyces cerevisiae. (2006) (989)
- Acetylation by Tip60 Is Required for Selective Histone Variant Exchange at DNA Lesions (2004) (694)
- Shotgun identification of protein modifications from protein complexes and lens tissue (2002) (531)
- AFF4, a component of the ELL/P-TEFb elongation complex and a shared subunit of MLL chimeras, can link transcription elongation to leukemia. (2010) (509)
- Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors (2006) (483)
- Histone Crosstalk between H2B Monoubiquitination and H3 Methylation Mediated by COMPASS (2007) (441)
- Proteomic survey of metabolic pathways in rice (2002) (381)
- Analysis of quantitative proteomic data generated via multidimensional protein identification technology. (2002) (374)
- Evolutionarily conserved multisubunit RBL2/p130 and E2F4 protein complex represses human cell cycle-dependent genes in quiescence. (2007) (370)
- Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins. (2010) (364)
- Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae (2003) (358)
- Correlation of relative abundance ratios derived from peptide ion chromatograms and spectrum counting for quantitative proteomic analysis using stable isotope labeling. (2005) (348)
- Poly(ADP-ribosyl)ation directs recruitment and activation of an ATP-dependent chromatin remodeler (2009) (332)
- A set of consensus mammalian mediator subunits identified by multidimensional protein identification technology. (2004) (327)
- Analyzing chromatin remodeling complexes using shotgun proteomics and normalized spectral abundance factors. (2006) (324)
- Human Mediator Subunit MED26 Functions as a Docking Site for Transcription Elongation Factors (2011) (323)
- Proteasome recruitment and activation of the Uch37 deubiquitinating enzyme by Adrm1 (2006) (315)
- Molecular Regulation of H3K4 Trimethylation by Wdr82, a Component of Human Set1/COMPASS (2008) (315)
- Linking H3K79 trimethylation to Wnt signaling through a novel Dot1-containing complex (DotCom). (2010) (303)
- Cyclin F-Mediated Degradation of Ribonucleotide Reductase M2 Controls Genome Integrity and DNA Repair (2012) (293)
- Molecular regulation of histone H3 trimethylation by COMPASS and the regulation of gene expression. (2005) (285)
- Chromatin remodelers Isw1 and Chd1 maintain chromatin structure during transcription by preventing histone exchange (2012) (282)
- A Mammalian Chromatin Remodeling Complex with Similarities to the Yeast INO80 Complex* (2005) (244)
- Purification of a human SRCAP complex that remodels chromatin by incorporating the histone variant H2A.Z into nucleosomes. (2006) (242)
- Probabilistic assembly of human protein interaction networks from label-free quantitative proteomics (2008) (234)
- Proteomic analysis by multidimensional protein identification technology. (2006) (232)
- Scm3 is essential to recruit the histone h3 variant cse4 to centromeres and to maintain a functional kinetochore. (2007) (231)
- DYRK1A protein kinase promotes quiescence and senescence through DREAM complex assembly. (2011) (222)
- Lentiviral Vpr usurps Cul4–DDB1[VprBP] E3 ubiquitin ligase to modulate cell cycle (2007) (221)
- Subunit Composition and Substrate Specificity of a MOF-containing Histone Acetyltransferase Distinct from the Male-specific Lethal (MSL) Complex* (2009) (215)
- Lentiviral Vpx Accessory Factor Targets VprBP/DCAF1 Substrate Adaptor for Cullin 4 E3 Ubiquitin Ligase to Enable Macrophage Infection (2008) (212)
- The COMPASS Family of H3K4 Methylases in Drosophila (2011) (210)
- The Mammalian YL1 Protein Is a Shared Subunit of the TRRAP/TIP60 Histone Acetyltransferase and SRCAP Complexes* (2005) (207)
- Multidimensional separations-based shotgun proteomics. (2007) (203)
- YY1 functions with INO80 to activate transcription (2007) (189)
- Effect of dynamic exclusion duration on spectral count based quantitative proteomics. (2009) (181)
- ATAC is a double histone acetyltransferase complex that stimulates nucleosome sliding (2008) (180)
- Rtr1 is a CTD phosphatase that regulates RNA polymerase II during the transition from serine 5 to serine 2 phosphorylation. (2009) (179)
- PTEN counteracts FBXL2 to promote IP3R3– and Ca2+–mediated apoptosis limiting tumour growth (2017) (177)
- SCFCyclin F controls centrosome homeostasis and mitotic fidelity via CP110 degradation (2010) (172)
- The Deubiquitylation Activity of Ubp8 Is Dependent upon Sgf11 and Its Association with the SAGA Complex (2005) (161)
- Statistical Similarities between Transcriptomics and Quantitative Shotgun Proteomics Data *S (2008) (160)
- Combinatorial depletion analysis to assemble the network architecture of the SAGA and ADA chromatin remodeling complexes (2011) (160)
- The SIRT2 deacetylase regulates autoacetylation of p300. (2008) (158)
- The Super Elongation Complex Family of RNA Polymerase II Elongation Factors: Gene Target Specificity and Transcriptional Output (2012) (154)
- Characterization of Cullin-box Sequences That Direct Recruitment of Cul2-Rbx1 and Cul5-Rbx2 Modules to Elongin BC-based Ubiquitin Ligases* (2008) (154)
- Histone H3 lysine-to-methionine mutants as a paradigm to study chromatin signaling (2014) (151)
- Quantitative shotgun proteomics using a protease with broad specificity and normalized spectral abundance factors. (2007) (149)
- Distinct modes of regulation of the Uch37 deubiquitinating enzyme in the proteasome and in the Ino80 chromatin-remodeling complex. (2008) (144)
- Delayed Correlation of mRNA and Protein Expression in Rapamycin-treated Cells and a Role for Ggc1 in Cellular Sensitivity to Rapamycin* (2009) (143)
- Characterization of Human Cyclin-Dependent Kinase 12 (CDK12) and CDK13 Complexes in C-Terminal Domain Phosphorylation, Gene Transcription, and RNA Processing (2015) (137)
- SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes. (2016) (136)
- Stable incorporation of sequence specific repressors Ash1 and Ume6 into the Rpd3L complex. (2005) (134)
- Host Cell Factor and an Uncharacterized SANT Domain Protein Are Stable Components of ATAC, a Novel dAda2A/dGcn5-Containing Histone Acetyltransferase Complex in Drosophila (2006) (123)
- Serine and SAM Responsive Complex SESAME Regulates Histone Modification Crosstalk by Sensing Cellular Metabolism. (2015) (122)
- Advances in shotgun proteomics and the analysis of membrane proteomes. (2010) (121)
- Analysis of the microbial proteome. (2000) (119)
- Ssu72 Phosphatase-dependent Erasure of Phospho-Ser7 Marks on the RNA Polymerase II C-terminal Domain Is Essential for Viability and Transcription Termination* (2012) (117)
- Reproducibility of quantitative proteomic analyses of complex biological mixtures by multidimensional protein identification technology. (2003) (115)
- Mediator structure and rearrangements required for holoenzyme formation (2017) (114)
- FBXL2- and PTPL1-mediated degradation of p110-free p85β regulatory subunit controls the PI(3)K signalling cascade (2013) (112)
- Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping (2020) (110)
- SCFCyclin F controls centrosome homeostasis and mitotic fidelity through CP 110 degradation (2010) (110)
- The HIR corepressor complex binds to nucleosomes generating a distinct protein/DNA complex resistant to remodeling by SWI/SNF. (2005) (109)
- Proteomic Analysis of Sox2‐Associated Proteins During Early Stages of Mouse Embryonic Stem Cell Differentiation Identifies Sox21 as a Novel Regulator of Stem Cell Fate (2010) (108)
- Heterochromatin Protein 1a stimulates histone H3 lysine 36 demethylation by the Drosophila KDM4A demethylase (2008) (108)
- The Integrator complex controls the termination of transcription at diverse classes of gene targets (2015) (101)
- Subunit Organization of the Human INO80 Chromatin Remodeling Complex (2011) (100)
- Heterochromatin protein 1 (HP1) connects the FACT histone chaperone complex to the phosphorylated CTD of RNA polymerase II. (2010) (100)
- Drosophila ELMO/CED-12 interacts with Myoblast city to direct myoblast fusion and ommatidial organization. (2008) (97)
- The human cytoplasmic dynein interactome reveals novel activators of motility (2017) (97)
- The Ego and the Dynamic Ground (1989) (96)
- The SOX2-Interactome in Brain Cancer Cells Identifies the Requirement of MSI2 and USP9X for the Growth of Brain Tumor Cells (2013) (96)
- ATXN7L3 and ENY2 Coordinate Activity of Multiple H2B Deubiquitinases Important for Cellular Proliferation and Tumor Growth. (2016) (90)
- Therapeutic Targeting of MLL Degradation Pathways in MLL-Rearranged Leukemia (2017) (89)
- Yeast Sgf73/Ataxin-7 serves to anchor the deubiquitination module into both SAGA and Slik(SALSA) HAT complexes (2009) (86)
- Zic2 is an enhancer-binding factor required for embryonic stem cell specification (2015) (84)
- The little elongation complex regulates small nuclear RNA transcription. (2011) (83)
- INTS3 controls the hSSB1-mediated DNA damage response (2009) (83)
- Highly Reproducible Label Free Quantitative Proteomic Analysis of RNA Polymerase Complexes* (2010) (81)
- The Inhibition of Polo Kinase by Matrimony Maintains G2 Arrest in the Meiotic Cell Cycle (2007) (81)
- CyclinA2-Cyclin-dependent Kinase Regulates SAMHD1 Protein Phosphohydrolase Domain* (2015) (80)
- Ctk Complex-Mediated Regulation of Histone Methylation by COMPASS (2006) (76)
- Gcn5 regulates the dissociation of SWI/SNF from chromatin by acetylation of Swi2/Snf2. (2010) (75)
- Characterization of the Yeast Trimeric-SAS Acetyltransferase Complex* (2005) (74)
- The continuing evolution of shotgun proteomics. (2005) (74)
- Deacetylase inhibitors dissociate the histone-targeting ING2 subunit from the Sin3 complex. (2010) (74)
- PARC and CUL7 form atypical cullin RING ligase complexes. (2007) (73)
- Degradation of Cep68 and PCNT cleavage mediate Cep215 removal from the PCM to allow centriole separation, disengagement and licensing (2014) (73)
- Neuralized-like 1 (Neurl1) Targeted to the Plasma Membrane by N-Myristoylation Regulates the Notch Ligand Jagged1* (2008) (73)
- Merkel cell polyomavirus recruits MYCL to the EP400 complex to promote oncogenesis (2017) (72)
- Parallel identification of new genes in Saccharomyces cerevisiae. (2002) (71)
- Regulation of the CRL4(Cdt2) ubiquitin ligase and cell-cycle exit by the SCF(Fbxo11) ubiquitin ligase. (2013) (69)
- CHD8 Associates with Human Staf and Contributes to Efficient U6 RNA Polymerase III Transcription (2007) (69)
- Determination of Protein Interactome of Transcription Factor Sox2 in Embryonic Stem Cells Engineered for Inducible Expression of Four Reprogramming Factors* (2012) (69)
- A label free quantitative proteomic analysis of the Saccharomyces cerevisiae nucleus. (2009) (69)
- Unraveling the Ubiquitome of the Human Malaria Parasite* (2011) (68)
- Post-transcription initiation function of the ubiquitous SAGA complex in tissue-specific gene activation. (2011) (67)
- Structural changes in TAF4b-TFIID correlate with promoter selectivity. (2008) (66)
- Polycomb Repressive Complex 2-Dependent and -Independent Functions of Jarid2 in Transcriptional Regulation in Drosophila (2012) (66)
- Thermus thermophilus bacteriophage phiYS40 genome and proteomic characterization of virions. (2006) (66)
- Glutathione: dehydroascorbate oxidoreductases. (1995) (65)
- Composition and Function of Mutant Swi/Snf Complexes. (2017) (65)
- The catalytic mechanism of the glutathione-dependent dehydroascorbate reductase activity of thioltransferase (glutaredoxin). (1999) (64)
- The ATAC Acetyltransferase Complex Coordinates MAP Kinases to Regulate JNK Target Genes (2010) (63)
- An ortholog of the Ro autoantigen functions in 23S rRNA maturation in D. radiodurans. (2007) (63)
- Building Protein-Protein Interaction Networks with Proteomics and Informatics Tools* (2011) (62)
- Regulation of H3K4 Trimethylation via Cps40 (Spp1) of COMPASS Is Monoubiquitination Independent: Implication for a Phe/Tyr Switch by the Catalytic Domain of Set1 (2009) (61)
- Purification and characterization of a glutathione dependent dehydroascorbate reductase from human erythrocytes. (1996) (60)
- RETRACTED: DNA-PKcs-PIDDosome: A Nuclear Caspase-2-Activating Complex with Role in G2/M Checkpoint Maintenance (2009) (60)
- A chemoproteomic portrait of the oncometabolite fumarate (2018) (59)
- The mammalian Mediator complex (2005) (57)
- Structural analyses of the chromatin remodeling enzymes INO80-C and SWR-C (2015) (57)
- Retraction Notice to: DNA-PKcs-PIDDosome: A Nuclear Caspase-2-Activating Complex with Role in G2/M Checkpoint Maintenance (2009) (56)
- The ULK1-FBXW5-SEC23B nexus controls autophagy (2018) (56)
- The tumour antigen PRAME is a subunit of a Cul2 ubiquitin ligase and associates with active NFY promoters (2011) (55)
- The little elongation complex functions at initiation and elongation phases of snRNA gene transcription. (2013) (55)
- Genomic and proteomic analysis of phiEco32, a novel Escherichia coli bacteriophage. (2008) (55)
- Genome comparison and proteomic characterization of Thermus thermophilus bacteriophages P23-45 and P74-26: siphoviruses with triplex-forming sequences and the longest known tails. (2008) (54)
- Gene duplication and neofunctionalization: POLR3G and POLR3GL (2014) (53)
- Identification of FAM111A as an SV40 Host Range Restriction and Adenovirus Helper Factor (2012) (52)
- Loss of Drosophila Ataxin-7, a SAGA subunit, reduces H2B ubiquitination and leads to neural and retinal degeneration (2014) (52)
- HIV-1 and HIV-2 exhibit divergent interactions with HLTF and UNG2 DNA repair proteins (2016) (51)
- Human Family with Sequence Similarity 60 Member A (FAM60A) Protein: a New Subunit of the Sin3 Deacetylase Complex* (2012) (49)
- Quantitative Proteomics Demonstrates That the RNA Polymerase II Subunits Rpb4 and Rpb7 Dissociate during Transcriptional Elongation* (2013) (48)
- Mnd1/Hop2 Facilitates Dmc1-Dependent Interhomolog Crossover Formation in Meiosis of Budding Yeast (2006) (48)
- Reduction of lead oxide (PbO2) by iodide and formation of iodoform in the PbO2/I(-)/NOM system. (2008) (48)
- TRIM29 regulates the assembly of DNA repair proteins into damaged chromatin (2015) (46)
- Improving proteomics mass accuracy by dynamic offline lock mass. (2011) (43)
- Nuclear cGMP-Dependent Kinase Regulates Gene Expression via Activity-Dependent Recruitment of a Conserved Histone Deacetylase Complex (2011) (43)
- Dynamic and Combinatorial Landscape of Histone Modifications during the Intraerythrocytic Developmental Cycle of the Malaria Parasite. (2016) (42)
- Merkel cell polyomavirus activates LSD1-mediated blockade of non-canonical BAF to regulate transformation and tumorigenesis (2020) (42)
- A novel histone fold domain-containing protein that replaces TAF6 in Drosophila SAGA is required for SAGA-dependent gene expression. (2009) (42)
- FBH1 promotes DNA double-strand breakage and apoptosis in response to DNA replication stress (2013) (42)
- Chromatin remodeller Fun30Fft3 induces nucleosome disassembly to facilitate RNA polymerase II elongation (2017) (41)
- Principles and applications of Multidimensional Protein Identification Technology (2004) (41)
- Shaggy/glycogen synthase kinase 3β and phosphorylation of Sarah/regulator of calcineurin are essential for completion of Drosophila female meiosis (2012) (41)
- Cyclin-dependent Kinase-mediated Sox2 Phosphorylation Enhances the Ability of Sox2 to Establish the Pluripotent State* (2015) (41)
- Characterization of a Highly Conserved Histone Related Protein, Ydl156w, and Its Functional Associations Using Quantitative Proteomic Analyses* (2011) (38)
- Identification of the dehydroascorbic acid reductase and thioltransferase (Glutaredoxin) activities of bovine erythrocyte glutathione peroxidase. (1999) (38)
- dCas9-targeted locus-specific protein isolation method identifies histone gene regulators (2018) (37)
- Determining Protein Complex Connectivity Using a Probabilistic Deletion Network Derived from Quantitative Proteomics (2009) (36)
- Evaluation of clustering algorithms for protein complex and protein interaction network assembly. (2009) (36)
- Swi/Snf dynamics on stress-responsive genes is governed by competitive bromodomain interactions (2014) (36)
- The TDH-GCN5L1-Fbxo15-KBP axis limits mitochondrial biogenesis in mouse embryonic stem cells (2017) (36)
- Proteomic analysis of chromatin-modifying complexes in Saccharomyces cerevisiae identifies novel subunits. (2004) (35)
- USP44 Is an Integral Component of N-CoR that Contributes to Gene Repression by Deubiquitinating Histone H2B. (2016) (35)
- STRIPAK directs PP2A activity toward MAP4K4 to promote oncogenic transformation of human cells (2020) (35)
- Utilisation of proteomics datasets generated via multidimensional protein identification technology (MudPIT). (2004) (35)
- The Essential Gene wda Encodes a WD40 Repeat Subunit of Drosophila SAGA Required for Histone H3 Acetylation (2006) (34)
- Identification of Topological Network Modules in Perturbed Protein Interaction Networks (2017) (34)
- Temporal regulation of gene expression of the Thermus thermophilus bacteriophage P23-45. (2011) (33)
- Improving label-free quantitative proteomics strategies by distributing shared peptides and stabilizing variance. (2015) (31)
- The E3 ubiquitin ligase SPOP controls resolution of systemic inflammation by triggering MYD88 degradation (2019) (30)
- A Mammalian Mediator Subunit that Shares Properties with Saccharomyces cerevisiae Mediator Subunit Cse2* (2004) (30)
- Binding of Drosophila Polo kinase to its regulator Matrimony is noncanonical and involves two separate functional domains (2013) (29)
- Role for Human Mediator Subunit MED25 in Recruitment of Mediator to Promoters by Endoplasmic Reticulum Stress-responsive Transcription Factor ATF6α* (2013) (28)
- Identification and Characterization of a Schizosaccharomyces pombe RNA Polymerase II Elongation Factor with Similarity to the Metazoan Transcription Factor ELL*♦ (2007) (28)
- Examining the complexity of human RNA polymerase complexes using HaloTag technology coupled to label free quantitative proteomics. (2012) (28)
- Human CCAAT/enhancer-binding protein β interacts with chromatin remodeling complexes of the imitation switch subfamily. (2012) (27)
- Analysis of the heterochromatin protein 1 (HP1) interactome in Drosophila. (2014) (27)
- Differential HDAC1/2 network analysis reveals a role for prefoldin/CCT in HDAC1/2 complex assembly (2018) (26)
- The methyltransferase SETD2 couples transcription and splicing by engaging mRNA processing factors through its SHI domain (2021) (26)
- Loss of KLHL6 promotes diffuse large B-cell lymphoma growth and survival by stabilizing the mRNA decay factor Roquin2 (2018) (25)
- New methods of proteome analysis: multidimensional chromatography and mass spectrometry (2000) (25)
- Generation and analysis of multidimensional protein identification technology datasets. (2009) (24)
- RUNX proteins desensitize multiple myeloma to lenalidomide via protecting IKZFs from degradation (2018) (24)
- Unraveling the dynamics of protein interactions with quantitative mass spectrometry (2011) (24)
- Topological scoring of protein interaction networks (2018) (23)
- TNIP2 is a Hub Protein in the NF-κB Network with Both Protein and RNA Mediated Interactions* (2016) (23)
- Affinity purification of protein complexes for analysis by multidimensional protein identification technology. (2012) (23)
- Controlling for Gene Expression Changes in Transcription Factor Protein Networks* (2014) (22)
- Assembly of the Elongin A Ubiquitin Ligase Is Regulated by Genotoxic and Other Stresses* (2015) (22)
- WDR76 Co-Localizes with Heterochromatin Related Proteins and Rapidly Responds to DNA Damage (2016) (22)
- Different phosphoisoforms of RNA polymerase II engage the Rtt103 termination factor in a structurally analogous manner (2017) (22)
- Characterization of a metazoan ADA acetyltransferase complex (2019) (21)
- The Spliceosomal Protein SF3B5 is a Novel Component of Drosophila SAGA that Functions in Gene Expression Independent of Splicing. (2016) (21)
- Suberoylanilide Hydroxamic Acid (SAHA)-Induced Dynamics of a Human Histone Deacetylase Protein Interaction Network* (2014) (21)
- The WHHERE coactivator complex is required for retinoic acid-dependent regulation of embryonic symmetry (2017) (21)
- Proteins interacting with cloning scars: a source of false positive protein-protein interactions (2015) (20)
- DYRK1A interacts with histone acetyl transferase p300 and CBP and localizes to enhancers (2018) (20)
- Integrative Modeling of a Sin3/HDAC Complex Sub-structure (2019) (20)
- FSC: Forest Stewardship Council Certification (2003) (19)
- Ebselen has dehydroascorbate reductase and thioltransferase-like activities. (2002) (19)
- Endoplasmic Reticulum Stress-responsive Transcription Factor ATF6α Directs Recruitment of the Mediator of RNA Polymerase II Transcription and Multiple Histone Acetyltransferase Complexes*♦ (2012) (19)
- Advancement of mass spectrometry-based proteomics technologies to explore triple negative breast cancer. (2016) (18)
- Analysis of Protein Composition Using Multidimensional Chromatography and Mass Spectrometry (2003) (18)
- A Structured Workflow for Mapping Human Sin3 Histone Deacetylase Complex Interactions Using Halo-MudPIT Affinity-Purification Mass Spectrometry * (2018) (18)
- Role for the MED21-MED7 Hinge in Assembly of the Mediator-RNA Polymerase II Holoenzyme* (2016) (17)
- Quantitation in Proteomic Experiments Utilizing Mass Spectrometry (2006) (16)
- Probing the Sensitivity of the Orbitrap Lumos Mass Spectrometer Using a Standard Reference Protein in a Complex Background. (2018) (16)
- Soft landing for protein chips (2003) (16)
- Enriching quantitative proteomics with SIN (2010) (16)
- NRBP1-Containing CRL2/CRL4A Regulates Amyloid β Production by Targeting BRI2 and BRI3 for Degradation. (2020) (15)
- Conserved abundance and topological features in chromatin‐remodeling protein interaction networks (2015) (15)
- Sample Preparation and In‐Solution Protease Digestion of Proteins for Chromatography‐Based Proteomic Analysis (2008) (15)
- Driving biochemical discovery with quantitative proteomics. (2011) (14)
- Cytoplasmic ATXN7L3B Interferes with Nuclear Functions of the SAGA Deubiquitinase Module (2016) (14)
- The Enok acetyltransferase complex interacts with Elg1 and negatively regulates PCNA unloading to promote the G1/S transition (2016) (14)
- The role of Mediator and Little Elongation Complex in transcription termination (2020) (13)
- A systems chemoproteomic analysis of acyl-CoA/protein interaction networks (2019) (13)
- The Drosophila Dbf4 ortholog Chiffon forms a complex with Gcn5 that is necessary for histone acetylation and viability (2019) (13)
- Glutathione dependent reduction of alloxan to dialuric acid catalyzed by thioltransferase (glutaredoxin): a possible role for thioltransferase in alloxan toxicity. (1997) (12)
- Differential complex formation via paralogs in the human Sin3 protein interaction network (2019) (12)
- Ataxin-7 and Non-stop coordinate SCAR protein levels, subcellular localization, and actin cytoskeleton organization (2018) (12)
- Biochemical Reduction of the Topology of the Diverse WDR76 Protein Interactome (2019) (12)
- Polyhydroxybenzoates Inhibit Ascorbic Acid Activation of Mitochondrial Glycerol-3-phosphate Dehydrogenase (2001) (12)
- The chromatin bound proteome of the human malaria parasite (2020) (12)
- Myeloid Leukemia Factor Acts in a Chaperone Complex to Regulate Transcription Factor Stability and Gene Expression. (2017) (12)
- Proteomics Reveals a Physical and Functional Link between Hepatocyte Nuclear Factor 4α and Transcription Factor IID* (2009) (12)
- Trio, a Rho Family GEF, Interacts with the Presynaptic Active Zone Proteins Piccolo and Bassoon (2016) (12)
- Moco biosynthesis and the ATAC acetyltransferase engage translation initiation by inhibiting latent PKR activity. (2016) (11)
- Proteomic and Genomic Analyses of the Rvb1 and Rvb2 Interaction Network upon Deletion of R2TP Complex Components* (2016) (11)
- BRK phosphorylates SMAD4 for proteasomal degradation and inhibits tumor suppressor FRK to control SNAIL, SLUG, and metastatic potential (2019) (11)
- K63-linked ubiquitination of DYRK1A by TRAF2 alleviates Sprouty 2-mediated degradation of EGFR (2021) (10)
- MPTAC Determines APP Fragmentation via Sensing Sulfur Amino Acid Catabolism. (2018) (9)
- A role for Yin Yang-1 (YY1) in the assembly of snRNA transcription complexes. (2006) (9)
- Identification of a nuclear localization signal and importin beta members mediating NUAK1 nuclear import inhibited by oxidative stress (2019) (9)
- Deciphering the combinatorial histone code (2007) (8)
- Peace and world order systems : teaching and research (1978) (8)
- Mass Spectrometry‐based Methods of Proteome Analysis (2006) (7)
- Structural basis of the interaction between SETD2 methyltransferase and hnRNP L paralogs for governing co-transcriptional splicing (2021) (7)
- Driving integrative structural modeling with serial capture affinity purification (2020) (7)
- A Metazoan ATAC Acetyltransferase Subunit That Regulates Mitogen-activated Protein Kinase Signaling Is Related to an Ancient Molybdopterin Synthase Component* (2012) (7)
- The H-Index of ‘An Approach to Correlate Tandem Mass Spectral Data of Peptides with Amino Acid Sequences in a Protein Database’ (2015) (7)
- β-Catenin and Associated Proteins Regulate Lineage Differentiation in Ground State Mouse Embryonic Stem Cells (2020) (6)
- Schizosaccharomyces pombe Pol II transcription elongation factor ELL functions as part of a rudimentary super elongation complex (2018) (6)
- Unravelling the biology of chromatin in health and cancer using proteomic approaches (2017) (5)
- INTS 3 controls the hSSB 1-mediated DNA damage response (2009) (5)
- PTPN14 regulates Roquin2 stability by tyrosine dephosphorylation (2018) (5)
- There is no human interactome (2016) (5)
- Analysis of Complex Protein Mixtures Using Nano-LC Coupled to MS/MS. (2006) (5)
- Yeast Nuak1 phosphorylates histone H3 threonine 11 in low glucose stress by the cooperation of AMPK and CK2 signaling (2020) (5)
- Generating Topological Protein Interaction Scores and Data Visualization with TopS. (2020) (5)
- Evaluating Chromatographic Approaches for the Quantitative Analysis of a Human Proteome on Orbitrap-Based Mass Spectrometry Systems. (2019) (4)
- Analysis of Complex Protein Mixtures Using Multidimensional Protein Identification Technology (MuDPIT). (2006) (4)
- Analysis of Protein Composition Using Multidimensional Chromatography and Mass Spectrometry (2014) (4)
- Differential Complex Formation via Paralogs in the Human Sin3 Protein Interaction Network (2020) (4)
- Stem cell-free therapy for glaucoma to preserve vision (2021) (4)
- The plasticity of the pyruvate dehydrogenase complex confers a labile structure that is associated with its catalytic activity (2020) (4)
- The ULK 1-FBXW 5SEC 23 B nexus controls autophagy 1 2 3 (4)
- The disordered regions of the methyltransferase SETD2 govern its function by regulating its proteolysis and phase separation (2021) (4)
- Construction of protein interaction networks based on the label-free quantitative proteomics. (2011) (4)
- Integration of Chromatography and Peptide Mass Modification for Quantitative Proteomics (2003) (4)
- FGF2 Antiproliferative Stimulation Induces Proteomic Dynamic Changes and High Expression of FOSB and JUNB in K‐Ras‐Driven Mouse Tumor Cells (2018) (4)
- SCF Cyclin F controls centrosome homeostasis and mitotic fidelity via CP 110 degradation (2016) (3)
- A proteomic view of the malaria parasite life cycle (2002) (3)
- Reshaping the Chromatin and Epigenetic Landscapes with Quantitative Mass Spectrometry* (2016) (3)
- Drosophila Acetyltransferase Complex in dAda 2 A / dGcn 5-Containing Histone Components of ATAC , a Novel SANT Domain Protein Are Stable Host Cell Factor and an Uncharacterized (2006) (3)
- Purification and enzymatic assay of class I histone deacetylase enzymes. (2019) (3)
- The SEC family of RNA Polymerase II elongation factors: gene (2012) (3)
- Cytidine acetylation yields a hypoinflammatory synthetic messenger RNA. (2021) (3)
- Data quality issues in proteomics – there are many paths to enlightenment (2016) (2)
- The histone methyltransferase SETD2 couples transcription and splicing by engaging pre-mRNA processing factors through its SHI domain (2020) (2)
- Application of shotgun proteomics to transcriptional regulatory pathways (2007) (2)
- Coupled Multidimensional Chromatography and Tandem Mass Spectrometry Systems for Complex Peptide Mixture Analysis (2008) (2)
- Author Correction: Merkel cell polyomavirus activates LSD1-mediated blockade of non-canonical BAF to regulate transformation and tumorigenesis (2020) (2)
- FBH1 promotes DNA double-strand breakage and apoptosis in response to DNA replication stress (2013) (2)
- Book Highlight—Turning Packaging Materials Into Capital (2014) (2)
- Developing Undergraduate Peace Studies Programs (1973) (2)
- Direct Marketing of Seafood: A Fisherman’s Perspective (2001) (1)
- Hypoxic response is driven by the BAF form of SWI/SNF (2022) (1)
- STRIPAK directs PP2A activity toward MAP4K4 to promote oncogenic transformation (2019) (1)
- Multidimensional Separations‐Based Shotgun Proteomics (2007) (1)
- Technique review Utilisation of proteomics datasets generated via multidimensional protein identification technology (2004) (1)
- Tandem Mass Spectrometry Analysis Using the ThermoFinnigan LCQ System. (2006) (1)
- Quantitative proteomics. (2013) (1)
- USP 44 Is an Integral Comp onent of N-CoR that Contributes to Gene Repression by Deubiquitinating Histone H 2 B Graphical (2016) (1)
- Multiple roles for PARP1 in ALC1-dependent nucleosome remodeling (2021) (1)
- Harnessing Ionic Selectivity In Acetyltransferase Chemoproteomic Probes (2020) (1)
- The E3 ubiquitin ligase SPOP controls resolution of systemic inflammation by triggering MYD88 degradation (2019) (0)
- Cryo-EM structure of the transcriptional Mediator (2017) (0)
- Roles for MED7 and MED21 in Regulating Assembly of the Mediator‐RNA Polymerase II Holoenzyme (2016) (0)
- Topological scoring of protein interaction networks (2019) (0)
- P186-T Evaluation of 36 MudPIT Replicate Datasets Using Normalized Spectral Counting and PLGEM (2007) (0)
- Quantitative Proteomics Characterization of Chromatin-Remodeling Complexes in Health and Disease (2014) (0)
- Interaction of Hepatocyte nuclear factor 4alpha (HNF4alpha) with the TATA box binding protein (TBP) contributes to TFIID recruitment and HNF4alpha dependent transcription (2009) (0)
- Author response: STRIPAK directs PP2A activity toward MAP4K4 to promote oncogenic transformation of human cells (2020) (0)
- Identification of Stem Cells from Large Cell Populations with Topological Scoring (2020) (0)
- Author Correction: Merkel cell polyomavirus activates LSD1-mediated blockade of non-canonical BAF to regulate transformation and tumorigenesis (2020) (0)
- Identification of stem cells from large cell populations with topological scoring. (2020) (0)
- Digestion of Insoluble Protein Fractions for Multidimensional Protein Identification Technology (MuDPIT) Analysis. (2006) (0)
- BRK Phosphorylates SMAD4 for proteasomal degradation and inhibits tumor suppressor FRK to control SNAIL, SLUG and metastatic potential (2018) (0)
- Herz chromatin signaling Histone H 3 lysine-to-methionine mutants as a paradigm to study (2014) (0)
- Serial Capture Affinity Purification and Integrated Structural Modeling of the H3K4me3 Binding and DNA Damage Related WDR76:SPIN1 Complex (2023) (0)
- A Web Resource for Improved Analysis of AP-MS Protein Interaction Data. (2013) (0)
- To Bead or not to Bead? That is the question with cross-linking mass spectrometry. (2020) (0)
- Perturbation of BRMS1 interactome reveals pathways that impact cell migration (2021) (0)
- Suberoylanilide Hydroxamic Acid (SAHA)-Induced Dynamics of a Human Histone Deacetylase Protein Interaction Network* □ S (2014) (0)
- Abstract 1348: Dynamic RNA acetylation revealed by quantitative cross-evolutionary mapping (2020) (0)
- Southern Accents (2019) (0)
- Cytidine Acetylation Yields a Noninflammatory Synthetic Messenger RNA (2021) (0)
- Differential HDAC1/2 network analysis reveals a role for prefoldin/CCT in HDAC1/2 complex assembly (2018) (0)
- Chromatin reassembly following RNA polymerase II transcription (2013) (0)
- The Drosophila Dbf4 ortholog Chiffon forms a complex with Gcn5 that is necessary for histone acetylation and viability - Supporting data for Torres-Zelada et al. (2018) (2018) (0)
- Functions of the Uch37 deubiquitinating enzyme in the proteasome and the INO80 chromatin remodeling complex (2009) (0)
- Harnessing Ionic Selectivity in Acetyltransferase Chemoproteomic Probes. (2020) (0)
- Loss of KLHL6 promotes diffuse large B-cell lymphoma growth and survival by stabilizing the mRNA decay factor roquin2 (2018) (0)
- Author response: Yeast Nuak1 phosphorylates histone H3 threonine 11 in low glucose stress by the cooperation of AMPK and CK2 signaling (2020) (0)
- Endoplasmic Reticulum Stress-responsive Transcription Factor ATF6 Directs Recruitment of the Mediator of RNA Polymerase II Transcription and Multiple Histone (2012) (0)
- Rewiring of a SMAD4 Protein Interaction Network by Breast Tumor Kinase Mediated Phosphorylation (2018) (0)
- Merkel cell polyomavirus activates LSD1-mediated blockade of non-canonical BAF to regulate transformation and tumorigenesis (2020) (0)
- Author response: The ULK1-FBXW5-SEC23B nexus controls autophagy (2018) (0)
- Erratum: Deciphering the combinatorial histone code (2007) (0)
- To activate or destroy: regulation of the RNA Pol II elongation factor and ubiquitin ligase Elongin (550.3) (2014) (0)
- EP6 Quantitative Proteomics (2007) (0)
- ALC1: A Chromatin Remodeling Enzyme Activated by Poly(ADP‐Ribose) Polymerase (PARP) and NAD (2009) (0)
- The role of Mediator and Little Elongation Complex in transcription termination (2020) (0)
- Abstract LB-267: A role for the Sin3 histone deacetylase complex in cell migration (2012) (0)
- Freight Rates: Southern Territory (2011) (0)
- DYRK1A Interacts with the Tuberous Sclerosis Complex and Promotes mTORC1 Activity (2023) (0)
- Perturbation of BRMS1 interactome reveals pathways that impact metastasis (2021) (0)
- Down South (1933) (0)
- Foxley's Progress (2014) (0)
- Sustainable Forest Management Graduate Education (2002) (0)
- The Best of Everything (2019) (0)
- Who Did You Expect to Meet? (2019) (0)
- There is no human interactome (2016) (0)
- Born in the CSA (2019) (0)
- Tom Petty’s Southern Accents (2019) (0)
- A new coactivator complex required for retinoic acid-dependent regulation of embryonic symmetry (2016) (0)
- Chromatin reassembly following RNA polymerase II transcription (2013) (0)
- Introduction (2019) (0)
- Forest Certification on Private Forests in the United States: Challenges and Opportunities (2001) (0)
- PMU42 Inclusion of Background Variables of the Theory of Planned Behavior to Predict Provider Intention to Prescribe Buprenorphine (2021) (0)
- Assembly of the Mediator-RNA polymerase II holoenzyme 1 Role for the MED 21-MED 7 hinge in assembly of the Mediator-RNA polymerase II holoenzyme (2016) (0)
- CHD8 Associates with Human Staf and Contributes to Efficient U6 RNA Polymerase III Transcription (cid:1) (2007) (0)
- The WHHERE coactivator complex is required for retinoic acid-dependent regulation of embryonic symmetry (2017) (0)
- Qualitative and Quantitative Proteomic Analyses via Multidimensional Protein Identification Technology (2003) (0)
- Cryo-EM structure of the Mediator-RNAPII complex (2017) (0)
- Notes (2019) (0)
- The TDH–GCN5L1–Fbxo15–KBP axis limits mitochondrial biogenesis in mouse embryonic stem cells (2017) (0)
- Subunit composition of the Sin3 histone deacetylase complex is altered by histone deacetylase inhibitors (2009) (0)
- The use of mass spectrometry in proteomics: database searching. (2006) (0)
- Petrie governs cell motility in a 3 D matrix Generation of compartmentalized pressure by a nuclear piston (2014) (0)
- Yeast Nuak1 phosphorylates histone H3 threonine 11 in low glucose stress conditions by the cooperation of AMPK and CK2 signaling (2020) (0)
- Role of the ELL complex in transcriptional regulation in S. pombe (2017) (0)
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What Schools Are Affiliated With Michael P. Washburn?
Michael P. Washburn is affiliated with the following schools:
