Michael Y. Galperin

Michael Y. Galperin's AcademicInfluence.com Rankings

Michael Y. Galperin

Biology

#6906

World Rank

#9722

Historical Rank

Bioinformatics

#75

World Rank

#76

Historical Rank

Computational Biology

#124

World Rank

#124

Historical Rank

biology Degrees

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Biology

Michael Y. Galperin's Degrees

PhD Bioinformatics Stanford University

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Michael Y. Galperin's Published Works

Number of citations in a given year to any of this author's works

Total number of citations to an author for the works they published in a given year. This highlights publication of the most important work(s) by the author

Published Works

The COG database: a tool for genome-scale analysis of protein functions and evolution (2000) (3563)
The COG database: new developments in phylogenetic classification of proteins from complete genomes (2001) (1869)
Cyclic di-GMP: the First 25 Years of a Universal Bacterial Second Messenger (2013) (1327)
Expanded microbial genome coverage and improved protein family annotation in the COG database (2014) (1062)
C‐di‐GMP: the dawning of a novel bacterial signalling system (2005) (679)
Novel domains of the prokaryotic two-component signal transduction systems. (2001) (673)
PilZ domain is part of the bacterial c-di-GMP binding protein (2006) (485)
Structural Classification of Bacterial Response Regulators: Diversity of Output Domains and Domain Combinations (2006) (472)
Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome (2003) (465)
A genomic update on clostridial phylogeny: Gram-negative spore formers and other misplaced clostridia. (2013) (454)
A census of membrane-bound and intracellular signal transduction proteins in bacteria: Bacterial IQ, extroverts and introverts (2005) (444)
Bacterial signal transduction network in a genomic perspective. (2004) (391)
Algorithms for computing parsimonious evolutionary scenarios for genome evolution, the last universal common ancestor and dominance of horizontal gene transfer in the evolution of prokaryotes (2003) (387)
'Conserved hypothetical' proteins: prioritization of targets for experimental study. (2004) (370)
Bacterial cellulose biosynthesis: diversity of operons, subunits, products, and functions. (2015) (339)
Origin of first cells at terrestrial, anoxic geothermal fields (2012) (330)
Diversity of structure and function of response regulator output domains. (2010) (326)
Who's your neighbor? New computational approaches for functional genomics (2000) (325)
Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea (1997) (316)
The cyanobacterial genome core and the origin of photosynthesis (2006) (304)
Comparative genomics of the Archaea (Euryarchaeota): evolution of conserved protein families, the stable core, and the variable shell. (1999) (286)
The catalytic domain of the P-type ATPase has the haloacid dehalogenase fold. (1998) (268)
The Molecular Biology Database Collection: 2005 update (2004) (261)
A diverse superfamily of enzymes with ATP‐dependent carboxylate—amine/thiol ligase activity (1997) (260)
COG database update: focus on microbial diversity, model organisms, and widespread pathogens (2020) (241)
Sodium Ion Cycle in Bacterial Pathogens: Evidence from Cross-Genome Comparisons (2001) (225)
Sequence ― Evolution ― Function: Computational Approaches in Comparative Genomics (2010) (218)
The 2012 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection (2011) (213)
Complete genome sequence of the extremely acidophilic methanotroph isolate V4, Methylacidiphilum infernorum, a representative of the bacterial phylum Verrucomicrobia (2008) (211)
Genomic determinants of sporulation in Bacilli and Clostridia: towards the minimal set of sporulation-specific genes (2012) (208)
Analogous enzymes: independent inventions in enzyme evolution. (1998) (197)
A novel type of conserved DNA-binding domain in the transcriptional regulators of the AlgR/AgrA/LytR family. (2002) (196)
Inventing the dynamo machine: the evolution of the F-type and V-type ATPases (2007) (189)
Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement, and operon disruption (1998) (189)
House cleaning, a part of good housekeeping (2006) (188)
An integrated analysis of the genome of the hyperthermophilic archaeon Pyrococcus abyssi (2003) (187)
Diversity of Cyclic Di-GMP-Binding Proteins and Mechanisms (2015) (182)
From complete genome sequence to 'complete' understanding? (2010) (169)
Searching for drug targets in microbial genomes. (1999) (166)
Amidase domains from bacterial and phage autolysins define a family of gamma-D,L-glutamate-specific amidohydrolases. (2003) (161)
A superfamily of metalloenzymes unifies phosphopentomutase and cofactor‐independent phosphoglycerate mutase with alkaline phosphatases and sulfatases (1998) (156)
Towards understanding the first genome sequence of a crenarchaeon by genome annotation using clusters of orthologous groups of proteins (COGs) (2000) (151)
Beyond complete genomes: from sequence to structure and function. (1998) (150)
The genome sequence of the psychrophilic archaeon, Methanococcoides burtonii: the role of genome evolution in cold adaptation (2009) (148)
Evolutionary primacy of sodium bioenergetics (2008) (148)
Divergence and Convergence in Enzyme Evolution* (2011) (147)
The past and present of sodium energetics: may the sodium-motive force be with you. (2008) (147)
Common Extracellular Sensory Domains in Transmembrane Receptors for Diverse Signal Transduction Pathways in Bacteria and Archaea (2003) (143)
Co-evolution of primordial membranes and membrane proteins. (2009) (142)
Genome Diversity of Spore-Forming Firmicutes. (2013) (140)
Genome sequence of the deep-sea γ-proteobacterium Idiomarina loihiensis reveals amino acid fermentation as a source of carbon and energy (2004) (138)
Breast mass classification in sonography with transfer learning using a deep convolutional neural network and color conversion (2019) (138)
The COMBREX Project: Design, Methodology, and Initial Results (2013) (137)
Nucleic Acids Research annual Database Issue and the NAR online Molecular Biology Database Collection in 2009 (2008) (136)
The Molecular Biology Database Collection: 2008 update (2007) (136)
Prokaryotic genomes: the emerging paradigm of genome-based microbiology. (1997) (135)
The 2011 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection (2010) (135)
Purification, Cloning, and Expression of an Apyrase from the Bed Bug Cimex lectularius (1998) (134)
Non-homologous isofunctional enzymes: A systematic analysis of alternative solutions in enzyme evolution (2010) (132)
A specialized version of the HD hydrolase domain implicated in signal transduction. (1999) (130)
The Molecular Biology Database Collection: 2004 update (2004) (130)
Comparative genome analysis. (2001) (127)
Global profiling of Shewanella oneidensis MR-1: expression of hypothetical genes and improved functional annotations. (2005) (126)
The 2010 Nucleic Acids Research Database Issue and online Database Collection: a community of data resources (2009) (124)
Conserved core structure and active site residues in alkaline phosphatase superfamily enzymes (2001) (121)
The Molecular Biology Database Collection: 2007 update (2006) (121)
The DxDxDG motif for calcium binding: multiple structural contexts and implications for evolution. (2004) (121)
Microbial genome analysis: the COG approach (2019) (120)
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology (2019) (118)
Structural insight into the mechanism of c-di-GMP hydrolysis by EAL domain phosphodiesterases. (2010) (118)
The 2014 Nucleic Acids Research Database Issue and an updated NAR online Molecular Biology Database Collection (2013) (117)
GIL, a new c‐di‐GMP‐binding protein domain involved in regulation of cellulose synthesis in enterobacteria (2014) (114)
Sequence — Evolution — Function (2003) (113)
The Molecular Biology Database Collection: 2006 update (2005) (110)
The PA14 domain, a conserved all-beta domain in bacterial toxins, enzymes, adhesins and signaling molecules. (2004) (109)
Acetyl-CoA Synthetase from the Amitochondriate EukaryoteGiardia lamblia Belongs to the Newly Recognized Superfamily of Acyl-CoA Synthetases (Nucleoside Diphosphate-forming)* (2000) (107)
The 2013 Nucleic Acids Research Database Issue and the online Molecular Biology Database Collection (2012) (103)
Nucleotide binding by the widespread high-affinity cyclic di-GMP receptor MshEN domain (2016) (102)
Interplay of heritage and habitat in the distribution of bacterial signal transduction systems. (2010) (99)
Systematic Identification of Cyclic-di-GMP Binding Proteins in Vibrio cholerae Reveals a Novel Class of Cyclic-di-GMP-Binding ATPases Associated with Type II Secretion Systems (2015) (97)
On the origin of life in the Zinc world. 2. Validation of the hypothesis on the photosynthesizing zinc sulfide edifices as cradles of life on Earth (2009) (94)
Identification and functional analysis of 'hypothetical' genes expressed in Haemophilus influenzae. (2004) (87)
Planctomycetes and eukaryotes: A case of analogy not homology (2011) (86)
The 2016 database issue of Nucleic Acids Research and an updated molecular biology database collection (2015) (85)
Globins synthesize the second messenger bis-(3'-5')-cyclic diguanosine monophosphate in bacteria. (2009) (84)
Systematic Nomenclature for GGDEF and EAL Domain-Containing Cyclic Di-GMP Turnover Proteins of Escherichia coli (2015) (83)
Using the COG Database to Improve Gene Recognition in Complete Genomes (2004) (83)
Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1 (2008) (82)
Dimeric dUTPases, HisE, and MazG belong to a new superfamily of all-alpha NTP pyrophosphohydrolases with potential "house-cleaning" functions. (2005) (81)
MHYT, a new integral membrane sensor domain. (2001) (78)
The 2015 Nucleic Acids Research Database Issue and Molecular Biology Database Collection (2014) (75)
Evolution of cytochrome bc complexes: from membrane-anchored dehydrogenases of ancient bacteria to triggers of apoptosis in vertebrates. (2013) (75)
MASE1 and MASE2: Two Novel Integral Membrane Sensory Domains (2003) (72)
Characterization of the N-ATPase, a distinct, laterally transferred Na+-translocating form of the bacterial F-type membrane ATPase (2010) (72)
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes (2016) (71)
Towards BioDBcore: a community-defined information specification for biological databases (2011) (71)
Survival of the fittest before the beginning of life: selection of the first oligonucleotide-like polymers by UV light (2003) (68)
Initial Proteome Analysis of Model Microorganism Haemophilus influenzae Strain Rd KW20 (2003) (68)
Conserved ‘Hypothetical’ Proteins: New Hints and New Puzzles (2001) (67)
Analysis of Structure and Function of Putative Surface-Exposed Proteins Encoded in the Streptococcus pneumoniae Genome: A Bioinformatics-Based Approach to Vaccine and Drug Design (2003) (61)
What bacteria want. (2018) (59)
The crystal structure of a complex of Campylobacter jejuni dUTPase with substrate analogue sheds light on the mechanism and suggests the "basic module" for dimeric d(C/U)TPases. (2004) (57)
Towards BioDBcore: a community-defined information specification for biological databases (2010) (57)
Sequence conservation in the chagasin family suggests a common trend in cysteine proteinase binding by unrelated protein inhibitors (2002) (56)
New Structural and Functional Contexts of the Dx[DN]xDG Linear Motif: Insights into Evolution of Calcium-Binding Proteins (2011) (56)
Phylogenomic reconstruction of archaeal fatty acid metabolism. (2014) (56)
Phylogenomic analysis of the family Peptostreptococcaceae (Clostridium cluster XI) and proposal for reclassification of Clostridium litorale (Fendrich et al. 1991) and Eubacterium acidaminophilum (Zindel et al. 1989) as Peptoclostridium litorale gen. nov. comb. nov. and Peptoclostridium acidaminophi (2016) (52)
Ancient systems of sodium/potassium homeostasis as predecessors of membrane bioenergetics (2015) (51)
Functional genomics and enzyme evolution. Homologous and analogous enzymes encoded in microbial genomes. (1999) (49)
A decade of research on the second messenger c-di-AMP. (2020) (47)
In Silico Metabolic Model and Protein Expression of Haemophilus influenzae Strain Rd KW20 in Rich Medium. (2004) (46)
Sequence analysis of an exceptionally conserved operon suggests enzymes for a new link between histidine and purine biosynthesis (1997) (45)
Cyclic di-AMP, a second messenger of primary importance: tertiary structures and binding mechanisms. (2020) (45)
An extracellular calcium-binding domain in bacteria with a distant relationship to EF-hands. (2003) (44)
Functional genomics and enzyme evolution (2004) (42)
Telling bacteria: do not LytTR. (2008) (42)
Aldolases of the DhnA family: a possible solution to the problem of pentose and hexose biosynthesis in archaea. (2000) (39)
Transfer and multiplex immunoblotting of a paraffin embedded tissue (2006) (38)
Cyanobacterial response regulator PatA contains a conserved N-terminal domain (PATAN) with an alpha-helical insertion (2006) (37)
Multiple glucan-binding proteins of Streptococcus sobrinus (1996) (37)
Phyletic Distribution and Lineage-Specific Domain Architectures of Archaeal Two-Component Signal Transduction Systems (2017) (36)
How many signal peptides are there in bacteria? (2013) (32)
Eukaryotic G protein-coupled receptors as descendants of prokaryotic sodium-translocating rhodopsins (2015) (32)
Evolution of cation binding in the active sites of P-loop nucleoside triphosphatases in relation to the basic catalytic mechanism (2018) (31)
New metrics for comparative genomics. (2006) (30)
Chelating agents inhibit activity and prevent expression of streptococcal glucan-binding lectins (1992) (30)
Sequence analysis of GerM and SpoVS, uncharacterized bacterial ‘sporulation’ proteins with widespread phylogenetic distribution (2008) (29)
The synthetase domains of cobalamin biosynthesis amidotransferases cobB and cobQ belong to a new family of ATP‐dependent amidoligases, related to dethiobiotin synthetase (2000) (29)
Structural diversity of calcium-binding proteins in bacteria: single-handed EF-hands? (2003) (29)
Metagenomics: from acid mine to shining sea. (2004) (29)
Physico‐Chemical and Evolutionary Constraints for the Formation and Selection of First Biopolymers: Towards the Consensus Paradigm of the Abiogenic Origin of Life (2007) (28)
Sequence analysis and characterization of a novel fibronectin-binding repeat domain from the surface of Streptococcus pneumoniae. (2004) (28)
Structural and Functional Characterization of the BcsG Subunit of the Cellulose Synthase in Salmonella typhimurium. (2018) (28)
Functional Analysis of Conserved Polar Residues in Vc-NhaD, Na+/H+ Antiporter of Vibrio cholerae* (2005) (27)
Identification of sensory and signal-transducing domains in two-component signaling systems. (2007) (27)
Sentra: a database of signal transduction proteins for comparative genome analysis (2006) (27)
Open Questions on the Origin of Life at Anoxic Geothermal Fields (2012) (26)
Principles and Methods of Sequence Analysis (2003) (26)
Experimental Verification of a Sequence-Based Prediction: F1F0-Type ATPase of Vibrio cholerae Transports Protons, Not Na+ Ions (2003) (25)
Bacterial second messengers, cGMP and c‐di‐GMP, in a quest for regulatory dominance (2013) (25)
The Role of Energy in the Emergence of Biology from Chemistry (2012) (25)
Stand-Alone EAL Domain Proteins Form a Distinct Subclass of EAL Proteins Involved in Regulation of Cell Motility and Biofilm Formation in Enterobacteria (2017) (25)
Paenibacillus infection with frequent viral coinfection contributes to postinfectious hydrocephalus in Ugandan infants (2020) (24)
Crystal Structure of the Bacterial YhcH Protein Indicates a Role in Sialic Acid Catabolism (2005) (24)
Improving the Accuracy of Diagnostic Breast Ultrasound (2002) (23)
Discovery of the Second Messenger Cyclic di-GMP. (2017) (23)
Genome Annotation and Analysis (2003) (22)
Bacterial Signal Transduction Modules: from Genomics to Biology Bacterial signaling proteins consist of modular domains that combine to yield arrays of sensors, transducers, and responders (2005) (21)
Evolutionary Concept in Genetics and Genomics (2003) (21)
Genome‐based identification and characterization of a putative mucin‐binding protein from the surface of Streptococcus pneumoniae (2006) (21)
Structural Conservation and Diversity of PilZ-Related Domains (2019) (20)
Using metabolic pathway databases for functional annotation. (1998) (20)
Phylogenomic Analysis of the Giardia intestinalis Transcarboxylase Reveals Multiple Instances of Domain Fusion and Fission in the Evolution of Biotin-Dependent Enzymes (2003) (19)
Δ H+ is required for flagellar growth in Escherichia coli (1982) (19)
Sustained sensing as an emerging principle in second messenger signaling systems. (2016) (19)
Salt in the Wound: A Possible Role of Na+ Gradient in Chlamydial Infection (2005) (18)
Modeling of interaction between cytochrome c and the WD domains of Apaf-1: bifurcated salt bridges underlying apoptosome assembly (2015) (17)
Ways to control harmful biofilms: prevention, inhibition, and eradication (2020) (17)
Copper chaperones in bacteria: association with copper-transporting ATPases. (2000) (15)
Emergence of cytochrome bc complexes in the context of photosynthesis (2017) (15)
Comparing Microbial Genomes: How the Gene Set Determines the Lifestyle (1999) (14)
Evolutionary origins of membrane proteins (2010) (12)
Comparative genomic analysis of evolutionarily conserved but functionally uncharacterized membrane proteins in archaea: Prediction of novel components of secretion, membrane remodeling and glycosylation systems (2015) (11)
Sequence analysis PilZ domain is part of the bacterial cdi-GMP binding protein (2005) (11)
11 - Towards Automated Prediction of Protein Function from Microbial Genomic Sequences (1999) (11)
Evolution of Central Metabolic Pathways: The Playground of Non-Orthologous Gene Displacement (2003) (11)
Proposed Role for KaiC-Like ATPases as Major Signal Transduction Hubs in Archaea (2017) (11)
On the abundance of zinc in the evolutionarily old protein domains (2010) (11)
New feel for new phyla (2008) (11)
Nonessential Ribosomal Proteins in Bacteria and Archaea Identified Using Clusters of Orthologous Genes (2021) (10)
Independent Evolution of Heavy Metal-Associated Domains in Copper Chaperones and Copper-Transporting ATPases (2001) (10)
Frontiers in computational genomics. (2003) (10)
Gene prediction accuracy in large DNA sequences. (2003) (9)
G protein-coupled receptors of class A harness the energy of membrane potential to increase their sensitivity and selectivity. (2019) (9)
Some bacteria degrade explosives, others prefer boiling methanol (2007) (8)
A Time to Scatter Genes and a Time to Gather Them (2013) (8)
The quest for biofuels fuels genome sequencing (2008) (8)
The minimal genome keeps growing. (2006) (8)
Complete Genome Sequences of the Human Pathogen Paenibacillus thiaminolyticus Mbale and Type Strain P. thiaminolyticus NRRL B-4156 (2020) (7)
A bacterial coat that is not pure cotton (2018) (7)
Chapter 17 FUNCTIONAL GENOMICS AND ENZYME EVOLUTION Homologous and Analogous Enzymes Encoded in Microbial (1999) (6)
The Bacterial and Viral Complexity of Postinfectious Hydrocephalus in Uganda (2020) (6)
All bugs, big and small. (2004) (6)
Sampling of microbial diversity by complete genomes. (2006) (6)
Cyclic di-GMP in Streptomycetes: A New Conformation, New Binding Mode, New Receptor, and a New Mechanism to Control Cell Development. (2020) (5)
Sequence Conservation, Domain Architectures, and Phylogenetic Distribution of the HD-GYP Type c-di-GMP Phosphodiesterases (2021) (5)
The 24th annual Nucleic Acids Research database issue: a look back and upcoming changes (2017) (5)
Comparative Genomics of Cyclic di-GMP Metabolism and Chemosensory Pathways in Shewanella algae Strains: Novel Bacterial Sensory Domains and Functional Insights into Lifestyle Regulation (2022) (5)
Social bacteria and asocial eukaryotes (2008) (5)
Sensory Transduction in Bacteria (2009) (5)
Genomes of model organisms: know thy tools (2008) (5)
Chemiluminescent detection of dextran bound to streptococcal glucan-binding lectin. (1995) (5)
Genome analysis using clusters of orthologous groups (COGs) (1998) (5)
Comparative analysis of active sites in P-loop nucleoside triphosphatases suggests an ancestral activation mechanism (2018) (5)
Conservation and Evolution of the Sporulation Gene Set in Diverse Members of the Firmicutes (2022) (5)
Sorting out the mix in microbial genomics (2008) (4)
Investigation of a method to assess breast ultrasound level of suspicion (2001) (4)
Comparative Genomics Approaches to Identifying Functionally Related Genes (2014) (4)
Sensory Transduction Network of E. coli (2009) (4)
More cool news from marine bacteria. (2005) (3)
Comparative Genomics and New Evolutionary Biology (2003) (3)
Dark matter in a deep-sea vent and in human mouth (2007) (3)
Statistical analysis to assess automated level of suspicion scoring methods in breast ultrasound (2003) (3)
Linear chromosomes in bacteria: no straight edge advantage? (2007) (3)
The dawn of synthetic genomics (2008) (3)
OPTIMIZATION OF A BREAST MASS CLASSIFIER FOR COMPUTER-AIDED ULTRASOUND ANALYSIS (2007) (3)
Researchisofunctional enzymes: A systematic analysis of alternative solutions in enzyme evolution (2010) (3)
Moshe Benziman and the Discovery of Cyclic Di-GMP (2010) (3)
Clp protease and antisense RNA jointly regulate the global regulator CarD to mediate mycobacterial starvation response (2022) (3)
Evolution of cation binding in the active sites of P-loop nucleoside triphosphatases (2018) (3)
Two forms of phosphomannomutase in gammaproteobacteria: The overlooked membrane-bound form of AlgC is required for twitching motility of Lysobacter enzymogenes (2019) (3)
Using archaeal genomics to fight global warming and clostridia to fight cancer. (2007) (3)
Genomes back-to-back: when sequencing race is a good thing. (2004) (3)
From biofouling to bioremediation: the good, the bad and the vague. (2004) (3)
The cytochrome bc1 complex and the evolution of membrane bioenergetics (2012) (2)
Life is not defined just in base pairs. (2005) (2)
Protein Sequence Motif The PA 14 domain , a conserved all-b domain in bacterial toxins , enzymes , adhesins and signaling molecules (2004) (2)
The secret of being cool. (2005) (2)
Information Sources for Genomics (2003) (2)
On the bottom of the deep blue sea. (2005) (2)
Corrigendum to “Novel domains of the prokaryotic two-component signal transduction systems”: [FEMS Microbiol. Lett. 203 (2001) 11–21] (2001) (2)
Comparative analysis of lipid biosynthesis in archaea, bacteria and eukaryotes: What was the structure of the first membrane lipids? (2012) (2)
Mycobacterial genomes for all tastes: from BCG to biodegradation of naphtalene and pyrene. (2007) (2)
Non-essential ribosomal proteins in bacteria and archaea identified using COGs (2021) (2)
ROC analysis of lesion descriptors in breast ultrasound images (2003) (2)
Complete Genome Sequence and Methylome of the Type Strain of Shewanella algae (2021) (2)
Erratum: Proposal for the reclassification of obligately purine-fermenting bacteria Clostridium acidurici (Barker 1938) and Clostridium purinilyticum (Dürre et al. 1981) as Gottschalkia acidurici gen. nov. comb. nov. and Gottschalkia purinilytica comb. nov. and of Eubacterium angustum (Beuscher and (2017) (2)
Genomes to aid in bioremediation of dry cleaning solvents, mothballs and more. (2006) (2)
The vibrio that sheds light. (2005) (2)
Systems biology: sprint or marathon? (2006) (2)
The bugs that came in from the cold. (2004) (2)
Faculty Opinions recommendation of Under elevated c-di-GMP in E. coli, YcgR alters flagellar motor bias and speed sequentially, with additional negative control of the flagellar regulon via the adaptor protein RssB. (2019) (1)
Genomes and the Protein Universe (2003) (1)
A square archaeon, the smallest eukaryote and the largest bacteria. (2006) (1)
The fuzzy border between a cell and an organelle. (2006) (1)
Genomics against flatulence (2007) (1)
Faculty Opinions recommendation of Large-scale contamination of microbial isolate genomes by Illumina PhiX control. (2016) (1)
To finish or not to finish? (2005) (1)
Microbial genomics as pursuit of happiness (2009) (1)
The Role of Energy in the Emergence of Biology from Chemistry (2012) (1)
Type IV Pili Are a Critical Virulence Factor in Clinical Isolates of Paenibacillus thiaminolyticus (2022) (1)
Effect of ultrasound on adhesiveness ofEscherichia coli (1983) (1)
Origin and Evolution of Photosynthesis: Clues from Genome Comparison (2008) (1)
Protecting sausages with bacteria instead of salt. (2006) (1)
OMICS-Related Research in Latin America (2005) (1)
WE‐D‐304A‐04: Performance of a Method to Aid Breast Ultrasound Interpretation Using Image Processing and Case‐Based Reasoning (2009) (1)
Organelles, Genomes and Eukaryote Phylogeny: An Evolutionary Synthesis in the Age of Genomics.The Systematics Association Special Volume Series 68.Edited byRobert P Hirtand, David S Horner.Boca Raton (Florida): CRC Press. $99.95. viii + 388 p; ill.; index. ISBN: 0‐415‐29904‐7. 2004. (2005) (1)
Application of parametric statistical weights in CAD imaging systems (2005) (1)
C1/2 Energetics of the first bacteria as inferred from genome analysis (2008) (0)
Introduction: Personal Interludes (2003) (0)
Faculty Opinions recommendation of Opportunity and means: horizontal gene transfer from the human host to a bacterial pathogen. (2011) (0)
Ancient systems of sodium/potassium homeostasis as predecessors of membrane bioenergetics (2015) (0)
Author response: Clp protease and antisense RNA jointly regulate the global regulator CarD to mediate mycobacterial starvation response (2022) (0)
Faculty Opinions recommendation of Protein abundance profiling of the Escherichia coli cytosol. (2008) (0)
Table 2.3, Examples of non-orthologous gene displacement between M. genitalium and H. influenzae (2003) (0)
Genome Sequence of Uric Acid-Fermenting Eubacterium angustum DSM 1989T (MK-1) (2017) (0)
All DACs in a Row: Domain Architectures of Bacterial and Archaeal Diadenylate Cyclases (2023) (0)
Bioinformatics for all! ABRF meeting: Bioinformatics and Biomolecular Technologies: linking genomes, proteomes and biochemistry, Durham, North Carolina, USA, 19-22 March 1999. Association of Biomolecular Resource Facilities. (1999) (0)
Comparative genomics: From genome sequences to genome biology (2016) (0)
P 1 The cytochrome bc 1 complex and the evolution of membrane bioenergetics (2012) (0)
Faculty Opinions recommendation of Plasmid DNA contaminant in molecular reagents. (2019) (0)
Class A GPCRs use the membrane potential to increase their sensitivity and selectivity (2019) (0)
Functional annotation of bacterial genomes, one COG at a time (2014) (0)
Author response: Evolution of cation binding in the active sites of P-loop nucleoside triphosphatases in relation to the basic catalytic mechanism (2018) (0)
Faculty Opinions recommendation of Cyclic-di-GMP and ADP bind to separate domains of PilB as mutual allosteric effectors. (2020) (0)
Faculty Opinions recommendation of Determination of Ligand Profiles for Pseudomonas aeruginosa Solute Binding Proteins. (2019) (0)
Epilogue: Peering through the crystal ball (2003) (0)
Figure 7.6, Distribution of tryptophan biosynthesis enzymes in organisms with completely sequenced genomes (2003) (0)
Looking at big brothers for clues. (2004) (0)
Faculty Opinions recommendation of CCR5-∆32 is deleterious in the homozygous state in humans. (2019) (0)
Faculty Opinions recommendation of Second messenger-mediated adjustment of bacterial swimming velocity. (2010) (0)
Class A GPCRs harness the energy of membrane potential to increase their sensitivity and selectivity (2020) (0)
Cultivation and functional characterization of 79 planctomycetes uncovers their unique biology (2019) (0)
Noncanonical Cyclic di-GMP Binding Modes (2020) (0)
EVOLUTIONARY BIOPHYSICS OF P-LOOP NUCLEOSIDE TRIPHOSPHATASES (2018) (0)
Genomics: From Phage to Human (2003) (0)
Eukaryotic G protein-coupled receptors as descendants of prokaryotic sodium-translocating rhodopsins (2015) (0)
Genomics update Protecting sausages with bacteria instead of salt (2006) (0)
Open Questions on the Origin of Life at Anoxic Geothermal Fields (2012) (0)
Figure 4.12, Results of the CD search for the TSG101 protein (2003) (0)
Faculty Opinions recommendation of Evaluation of a Salmonella Strain Lacking the Secondary Messenger C-di-GMP and RpoS as a Live Oral Vaccine. (2016) (0)
Figure 2.10, Phyletic patterns of the three forms of phosphoglycerate mutase (2003) (0)
Faculty Opinions recommendation of The single-domain response regulator LerC functions as a connector protein in the Legionella pneumophila effectors regulatory network. (2019) (0)
Kin: How We Came to Know Our Microbe Relatives. By John L. Ingraham. Cambridge (Massachusetts): Harvard University Press. $29.95. xi + 292 p.; ill.; index. ISBN: 9780674660403. 2017. (2018) (0)
Juan Luis Ramos: An exceptional Editor of Environmental Microbiology. (2022) (0)
Faculty Opinions recommendation of Bacteriophage-mediated interference of the c-di-GMP signalling pathway in Pseudomonas aeruginosa. (2021) (0)
Genomics update Genomes of model organisms: know thy tools (2008) (0)
Ubiquity of Cyclic Di-GMP Pathways: a Bioinformatic Analysis (2010) (0)
Modeling of interaction between cytochrome c and the WD domains of Apaf-1: bifurcated salt bridges underlying apoptosome assembly (2015) (0)
TU-A-301-11: Radiologistsˈ Performance while Using a Computer-Aided Diagnostic Method to Aid Breast Ultrasound Interpretation (2011) (0)
On planctomycetes, eukaryotes, and analogy (2011) (0)
Faculty of 1000 evaluation for The Wisdom of Networks: A General Adaptation and Learning Mechanism of Complex Systems: The Network Core Triggers Fast Responses to Known Stimuli; Innovations Require the Slow Network Periphery and Are Encoded by Core-Remodeling. (2018) (0)
Involvement of nitric oxide in CNS demyelination and inflammation (1995) (0)
Genomics update Sampling of microbial diversity by complete genomes (2006) (0)
Faculty of 1000 evaluation for c-di-GMP Regulates Various Phenotypes and Insecticidal Activity of Gram-Positive Bacillus thuringiensis. (2018) (0)
Faculty Opinions recommendation of DpaA Detaches Braun's Lipoprotein from Peptidoglycan. (2021) (0)
The emerging diversity of Na+-translocating ion pumps supports the evolutionary primacy of Na+-based bioienergetics (2016) (0)
Faculty of 1000 evaluation for Cyclic di-GMP differentially tunes a bacterial flagellar motor through a novel class of CheY-like regulators. (2018) (0)
Mycobacterial CarD defines a novel mechanism of response to starvation stress (2021) (0)
Computational Approaches to the Analysis of Biomolecular Sequences, Structures and Their Functions and Applications to Biotechnology and Clinical Data Studies (23-27 Mar 2020) Organizing Commettiee Co-chairs (2020) (0)
OMICS-Related Research in South America (2005) (0)
Computational Approaches to the Analysis of Biomolecular Sequences, Structures and Their Functions and Applications to Biotechnology and Clinical Data Studies (23-27 Mar 2020) Organizing Commettiee Co-chairs (2020) (0)
Faculty Opinions recommendation of Isolation of an archaeon at the prokaryote-eukaryote interface. (2020) (0)
Identiﬁcation and functional analysis of ‘hypothetical’ genes expressed in Haemophilus inﬂuenzae (2004) (0)
Systems biology : sprint or marathon ? Editorial overview (2006) (0)
Faculty Opinions recommendation of Crystal structures of YkuI and its complex with second messenger cyclic Di-GMP suggest catalytic mechanism of phosphodiester bond cleavage by EAL domains. (2009) (0)
Does Independent Liability Exist in Court Enforcement Proceedings (2015) (0)
Faculty Opinions recommendation of Abundance and distribution of Archaea in the subseafloor sedimentary biosphere. (2018) (0)
Subunit composition of the membrane energy-transducing complexes in diverse bacteria and archaea (2018) (0)
Experimental Veriﬁcation of a Sequence-Based Prediction: F 1 F 0 -Type ATPase of Vibrio cholerae Transports Protons, Not Na (cid:1) Ions (2002) (0)
Protein Domains Involved in Intracellular Signal Transduction (2009) (0)
Faculty Opinions recommendation of Transcriptome complexity and riboregulation in the human pathogen Helicobacter pylori. (2013) (0)
Faculty Opinions recommendation of Cohesive Properties of the Caulobacter crescentus Holdfast Adhesin Are Regulated by a Novel c-di-GMP Effector Protein. (2017) (0)
Faculty Opinions recommendation of Gram-negative outer-membrane proteins with multiple β-barrel domains. (2021) (0)
Genomics update The minimal genome keeps growing (2006) (0)
F1000Prime recommendation of c-di-AMP hydrolysis by the phosphodiesterase AtaC promotes differentiation of multicellular bacteria. (2020) (0)
Faculty Opinions recommendation of The c-di-GMP binding protein YcgR controls flagellar motor direction and speed to affect chemotaxis by a "backstop brake" mechanism. (2010) (0)

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University of Louisville
Stanford University
Moscow State University

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